HHsearch results for GI: 254780170 and protein with PDBid: 3fxq_A

>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=93.46  E-value=0.41  Score=26.01  Aligned_cols=196  Identities=8%  Similarity=0.012  Sum_probs=119.1

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
                      .+|.|++|+.......           +-.++..++...-  ....++++..+..+.+..|.+|++|+.+...... .. 
T Consensus        90 ~~~~l~I~~~~~~~~~-----------~l~~~i~~~~~~~--p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~-~~-  154 (305)
T 3fxq_A           90 WEGHITFAASPAIALA-----------ALPLALASFAREF--PDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKH-DI-  154 (305)
T ss_dssp             HHTEEEEEECHHHHHT-----------HHHHHHHHHHHHC--TTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGG-GS-
T ss_pred             CCCEEEEEECCCHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCC-CC-
T ss_conf             6625999624630276-----------7899999999978--9976765744817777787559734899840554-35-


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCCC---CCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCC-CCE-EEECCHHHHHHH
Q ss_conf             1027843532234402346302113---475364178620343-1342699999999862998-507-874798999999
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKKG---ISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMK-YHP-IVFERVEEIDAA  185 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~~---i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~-~~~-v~~~~~~~a~~a  185 (342)
                       ...+.+ .+.+.+...++++++..   ..++++|.....+.. .++..-..+.++++..++. ..+ ..+++.......
T Consensus       155 -~~~l~~-~~l~~~~~~~~~~~~hpl~~~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  232 (305)
T 3fxq_A          155 -DTDLEA-QPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGV  232 (305)
T ss_dssp             -CTTEEE-EEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHH
T ss_pred             -CCCCEE-EECCCCCEEEEECCCCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             -688437-871444179998688845689895675302145523776531257789997198632233333679999999


Q ss_pred             HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC---HHHHHHHHHHHHHHH
Q ss_conf             873960299825047999998367800100256--4442371010002777---579999887744331
Q gi|254780170|r  186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD---TEWYNIVSWTHYAMV  249 (342)
Q Consensus       186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD---~~w~d~V~W~~~ali  249 (342)
                      +.+|..-++..+..  +   ......++.+.+|  +..-..++..+.+++-   +.-..+++|.-.-..
T Consensus       233 v~~g~gi~~lp~~~--~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~  296 (305)
T 3fxq_A          233 VAHSDLLTTMPRTL--Y---ERNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL  296 (305)
T ss_dssp             HHTSSCEEEEEHHH--H---HSSTTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC
T ss_pred             HHCCCEEEECCHHH--H---HHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             97499899811999--9---8551379989996888887768999998969889999999999999999