HHsearch results for GI: 254780170 and protein with PDBid: 3fxq_A
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=93.46 E-value=0.41 Score=26.01 Aligned_cols=196 Identities=8% Similarity=0.012 Sum_probs=119.1
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+....... +-.++..++...- ....++++..+..+.+..|.+|++|+.+...... ..
T Consensus 90 ~~~~l~I~~~~~~~~~-----------~l~~~i~~~~~~~--p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~-~~- 154 (305)
T 3fxq_A 90 WEGHITFAASPAIALA-----------ALPLALASFAREF--PDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKH-DI- 154 (305)
T ss_dssp HHTEEEEEECHHHHHT-----------HHHHHHHHHHHHC--TTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGG-GS-
T ss_pred CCCEEEEEECCCHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCC-CC-
T ss_conf 6625999624630276-----------7899999999978--9976765744817777787559734899840554-35-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC---CCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCC-CCE-EEECCHHHHHHH
Q ss_conf 1027843532234402346302113---475364178620343-1342699999999862998-507-874798999999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG---ISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMK-YHP-IVFERVEEIDAA 185 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~---i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~-~~~-v~~~~~~~a~~a 185 (342)
...+.+ .+.+.+...++++++.. ..++++|.....+.. .++..-..+.++++..++. ..+ ..+++.......
T Consensus 155 -~~~l~~-~~l~~~~~~~~~~~~hpl~~~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 232 (305)
T 3fxq_A 155 -DTDLEA-QPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGV 232 (305)
T ss_dssp -CTTEEE-EEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHH
T ss_pred -CCCCEE-EECCCCCEEEEECCCCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf -688437-871444179998688845689895675302145523776531257789997198632233333679999999
Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC---HHHHHHHHHHHHHHH
Q ss_conf 873960299825047999998367800100256--4442371010002777---579999887744331
Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD---TEWYNIVSWTHYAMV 249 (342)
Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD---~~w~d~V~W~~~ali 249 (342)
+.+|..-++..+.. + ......++.+.+| +..-..++..+.+++- +.-..+++|.-.-..
T Consensus 233 v~~g~gi~~lp~~~--~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~ 296 (305)
T 3fxq_A 233 VAHSDLLTTMPRTL--Y---ERNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL 296 (305)
T ss_dssp HHTSSCEEEEEHHH--H---HSSTTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC
T ss_pred HHCCCEEEECCHHH--H---HHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 97499899811999--9---8551379989996888887768999998969889999999999999999