HHsearch results for GI: 254780170 and protein with PDBid: 3g3k_A
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2i0c_A* 3c31_A* 1txf_A* 3c32_A* 3c33_A* 3c34_A* 3c35_A* 3c36_A* 2wky_A* ...
Probab=99.88 E-value=9.5e-22 Score=156.68 Aligned_cols=206 Identities=11% Similarity=0.067 Sum_probs=147.0
Q ss_pred CCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-------------CCCCCHHHH
Q ss_conf 794999871789883068898-------988015099999999996798220259981-------------431002677
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPL-------------NAKERFLAL 92 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~-------------~~~~rf~aL 92 (342)
..+|+|++.. +|||.+.+++ |+++|||||++++||+.++- +++|+.+ +|+.+++.|
T Consensus 3 ~ktl~v~t~~-~~P~~~~~~~~~~~~~n~~~~G~dvDl~~~ia~~lg~---~~~~~~v~~~~~~~~~~~~~~w~~~~~~l 78 (259)
T 3g3k_A 3 NRSLIVTTIL-EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGF---TYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp CCCEEEEECC-BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CEEEEEEECC-CCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8699999786-4898746468887678995688589999999998099---75899735555453343567889998764
Q ss_pred HCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC---CCCEEEEECCCHHHHHHHH------
Q ss_conf 4396279981243253201102784353223440234630211347536417---8620343134269999999------
Q gi|254780170|r 93 QSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS---GASICVQAGTTTELTLADY------ 163 (342)
Q Consensus 93 ~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~---G~~I~v~~GTT~e~~l~~~------ 163 (342)
++|++|++++++++|.+| ...++|+.||+.+++.+++++++++....++. +.++++..+..........
T Consensus 79 ~~g~~D~~~~~~~~t~eR--~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVR--EEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYD 156 (259)
T ss_dssp HTTSCSEECSSCBCCHHH--HTTEEECSCSEEECEEEEEESSSSCCSHHHHHTCSSSEEEEETTSHHHHHHHHCCSHHHH
T ss_pred HCCCCCEEEECCCCCHHH--HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 102357786358679999--953546687122560455216886553345404542245677242278888872015778
Q ss_pred --HHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf --986299850787479899999987396029982504799999836780010025644423710100027775799998
Q gi|254780170|r 164 --FKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIV 241 (342)
Q Consensus 164 --~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V 241 (342)
............+.+..........+. ++++.|.+.+...... ..+..++...+..+++++++++++ .|++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ia~~k~s-~L~~~i 231 (259)
T 3g3k_A 157 KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQR---NCNLTQIGGLIDSKGYGVGTPMGS-PYRDKI 231 (259)
T ss_dssp HHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHH---CTTEEEESSCSSCEEECCEEETTC-THHHHH
T ss_pred HHHHHHCCHHHHHHHCCHHHHHHHHHCCC-EEEEECHHHHHHHHHC---CCCEEECCCCCCCCEEEEEEECCH-HHHHHH
T ss_conf 99875200024565300788887750576-5998236889998741---650342265667721899992984-999999
Q ss_pred HHHHHHHH
Q ss_conf 87744331
Q gi|254780170|r 242 SWTHYAMV 249 (342)
Q Consensus 242 ~W~~~ali 249 (342)
+=.+..|.
T Consensus 232 n~al~~m~ 239 (259)
T 3g3k_A 232 TLAILKLQ 239 (259)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999