HHsearch results for GI: 254780170 and protein with PDBid: 3g3k_A

>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2i0c_A* 3c31_A* 1txf_A* 3c32_A* 3c33_A* 3c34_A* 3c35_A* 3c36_A* 2wky_A* ...
Probab=99.88  E-value=9.5e-22  Score=156.68  Aligned_cols=206  Identities=11%  Similarity=0.067  Sum_probs=147.0

Q ss_pred             CCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-------------CCCCCHHHH
Q ss_conf             794999871789883068898-------988015099999999996798220259981-------------431002677
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPL-------------NAKERFLAL   92 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~-------------~~~~rf~aL   92 (342)
                      ..+|+|++.. +|||.+.+++       |+++|||||++++||+.++-   +++|+.+             +|+.+++.|
T Consensus         3 ~ktl~v~t~~-~~P~~~~~~~~~~~~~n~~~~G~dvDl~~~ia~~lg~---~~~~~~v~~~~~~~~~~~~~~w~~~~~~l   78 (259)
T 3g3k_A            3 NRSLIVTTIL-EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGF---TYEIRLVEDGKYGAQDDVNGQWNGMVREL   78 (259)
T ss_dssp             CCCEEEEECC-BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred             CEEEEEEECC-CCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             8699999786-4898746468887678995688589999999998099---75899735555453343567889998764


Q ss_pred             HCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC---CCCEEEEECCCHHHHHHHH------
Q ss_conf             4396279981243253201102784353223440234630211347536417---8620343134269999999------
Q gi|254780170|r   93 QSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS---GASICVQAGTTTELTLADY------  163 (342)
Q Consensus        93 ~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~---G~~I~v~~GTT~e~~l~~~------  163 (342)
                      ++|++|++++++++|.+|  ...++|+.||+.+++.+++++++++....++.   +.++++..+..........      
T Consensus        79 ~~g~~D~~~~~~~~t~eR--~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (259)
T 3g3k_A           79 IDHKADLAVAPLAITYVR--EEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYD  156 (259)
T ss_dssp             HTTSCSEECSSCBCCHHH--HTTEEECSCSEEECEEEEEESSSSCCSHHHHHTCSSSEEEEETTSHHHHHHHHCCSHHHH
T ss_pred             HCCCCCEEEECCCCCHHH--HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             102357786358679999--953546687122560455216886553345404542245677242278888872015778


Q ss_pred             --HHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf             --986299850787479899999987396029982504799999836780010025644423710100027775799998
Q gi|254780170|r  164 --FKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIV  241 (342)
Q Consensus       164 --~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V  241 (342)
                        ............+.+..........+. ++++.|.+.+......   ..+..++...+..+++++++++++ .|++.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ia~~k~s-~L~~~i  231 (259)
T 3g3k_A          157 KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQR---NCNLTQIGGLIDSKGYGVGTPMGS-PYRDKI  231 (259)
T ss_dssp             HHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHH---CTTEEEESSCSSCEEECCEEETTC-THHHHH
T ss_pred             HHHHHHCCHHHHHHHCCHHHHHHHHHCCC-EEEEECHHHHHHHHHC---CCCEEECCCCCCCCEEEEEEECCH-HHHHHH
T ss_conf             99875200024565300788887750576-5998236889998741---650342265667721899992984-999999


Q ss_pred             HHHHHHHH
Q ss_conf             87744331
Q gi|254780170|r  242 SWTHYAMV  249 (342)
Q Consensus       242 ~W~~~ali  249 (342)
                      +=.+..|.
T Consensus       232 n~al~~m~  239 (259)
T 3g3k_A          232 TLAILKLQ  239 (259)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999