HHsearch results for GI: 254780170 and protein with PDBid: 3ho7_A
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.46 E-value=0.082 Score=30.41 Aligned_cols=191 Identities=8% Similarity=0.073 Sum_probs=109.6
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342)
+|.|++|+.+....+ +=.++.+++.+.- - ..++++....+.+.+..|.+|++|+.+.......
T Consensus 10 ~G~l~ig~~~s~~~~-----------~lp~~l~~f~~~~-P-~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~~~~~---- 72 (232)
T 3ho7_A 10 TGRLNIAVLPTIAPY-----------LLPRVFPIWKKEL-A-GLEIHVSEMQTSRCLASLLSGEIDMAIIASKAET---- 72 (232)
T ss_dssp CEEEEEEECTTTHHH-----------HHHHHHHHHHHHS-T-TEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCC----
T ss_pred EEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC-C-CCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCC----
T ss_conf 279999943778999-----------9999999999988-8-9689999898289999997798428986347655----
Q ss_pred CCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCC-CCE-EEECCHHHHHH
Q ss_conf 02784353223440234630211-----347536417862034-31342699999999862998-507-87479899999
Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASICV-QAGTTTELTLADYFKAHNMK-YHP-IVFERVEEIDA 184 (342)
Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~-~~~-v~~~~~~~a~~ 184 (342)
.++.+- +.+-+.-.++++++. ..-+.++|....... ..++.....+.+++...+.. .++ ...++...+..
T Consensus 73 -~~l~~~-~l~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (232)
T 3ho7_A 73 -EGLEDD-LLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMR 150 (232)
T ss_dssp -TTEEEE-EEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHH
T ss_pred -CCCEEE-EECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf -430034-200010222111345433222221333145537982599742679999999759988765013588899999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9873960299825047999998367800100256--444237101000277757999988774433
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAM 248 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~al 248 (342)
...+|-.=++.-... + ....+.+...+.| +....-+++.+.|++... ...++|.+..+
T Consensus 151 lv~~g~Gia~lP~~~-~----~~~~~~~~l~~~p~~~~~~~~~i~lv~~~~~~~-~~~~~~fi~~l 210 (232)
T 3ho7_A 151 LVESGQGITFIPQLT-V----EQLSPSQKELVRPFGMPRPVREVRLAVRQDYSR-RKLREQLIGLL 210 (232)
T ss_dssp HHHTTCCEEEEEGGG-G----GGSCHHHHTTEECBCSSEEEEEEEEEEETTCSC-HHHHHHHHHHH
T ss_pred HHHHCCEEEEECHHH-H----HHHCCCCCEEEEECCCCCCEEEEEEEEECCCCC-CHHHHHHHHHH
T ss_conf 999399899830999-9----855027988999889998655999999893988-99999999999