HHsearch results for GI: 254780170 and protein with PDBid: 3hv1_A
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=100.00 E-value=1.7e-37 Score=256.52 Aligned_cols=222 Identities=16% Similarity=0.181 Sum_probs=195.9
Q ss_pred HHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCC
Q ss_conf 98401244216899985794999871789883068898988015099999999996798220259981431002677439
Q gi|254780170|r 16 FFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK 95 (342)
Q Consensus 16 ~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG 95 (342)
+.++.+...+++++++++++|+||++.++|||+|.|++|+++||++|+++++++.++ .+++|++++|..++.+|.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~~~~l~vg~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~lg---~~v~~~~~~~~~~~~~l~~g 79 (268)
T 3hv1_A 3 LRSHFATQKDQWQTYTKEKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKLYG---IDVEWQAIDWDMKETELKNG 79 (268)
T ss_dssp -CCTTGGGSCCHHHHHHHTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHTTT---CEEEEEECCGGGHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEECCCCHHHHHHHHHCC
T ss_conf 665344544159998609979999878988955899999888729999999999969---96575158889999999869
Q ss_pred CEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHH---HHHCCCCCC
Q ss_conf 62799812432532011027843532234402346302113475364178620343134269999999---986299850
Q gi|254780170|r 96 QIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADY---FKAHNMKYH 172 (342)
Q Consensus 96 ~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~---~~~~~~~~~ 172 (342)
++|++++.+++|++|+ ..+.|+.||+++...+++|+++++++++||+|++|||..||+....+... .+......+
T Consensus 80 ~~Di~~~~~~~~~~r~--~~~~~s~py~~~~~~~v~~~~~~~~~~~dl~~~~i~v~~gs~~~~~~~~~~~~~~~~~~~~~ 157 (268)
T 3hv1_A 80 TIDLIWNGYSVTDERK--QSADFTEPYMVNEQVLVTKKSSGIDSVAGMAGKTLGAQAGSSGYDAFNASPKILKDVVANQK 157 (268)
T ss_dssp SCSEECSSCBCCHHHH--TTCEECCCCEEECEEEEEEGGGCCCSSGGGTTCCEEEETTCHHHHHHHHCTTTTTTTSGGGC
T ss_pred CCCCCCCCCCCCHHHH--HCEEECCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 9760023266785444--11563212135643689868999999789579823886685099999986655543166732
Q ss_pred EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 7874798999999873960299825047999998367800100256444237101000277757999988
Q gi|254780170|r 173 PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVS 242 (342)
Q Consensus 173 ~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~ 242 (342)
++.|++..+++.+|.+||||+++.|...+.......+..+.+.+++..++.+|++++++++|++|.+.++
T Consensus 158 i~~~~~~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in 227 (268)
T 3hv1_A 158 VVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKIN 227 (268)
T ss_dssp EEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHH
T ss_pred EEECCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 4403999999999976975799943899999998589888303337777774389998189999999999