HHsearch results for GI: 254780170 and protein with PDBid: 3i6v_A
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Probab=99.96 E-value=2.2e-28 Score=198.75 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=162.8
Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC
Q ss_conf 94999871789883068898988015099999999996798220259981431002677439627998124325320110
Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS 113 (342)
Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~ 113 (342)
.+||||+..++|||+|.|++|++.||++|+++++|+.++ .+++|++.+|..++..|.+|++|++++++++|.+|+
T Consensus 5 ~tlrVg~~~~~pP~~~~d~~g~~~G~~vDl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~D~i~~~~~~t~er~-- 79 (232)
T 3i6v_A 5 DTVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAG---LTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERD-- 79 (232)
T ss_dssp -CEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHHT---CCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHH--
T ss_pred CEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHH--
T ss_conf 959999879979936999999787759999999999849---967999767488999986799779997786897898--
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE
Q ss_conf 27843532234402346302113475364178620343134269999999986299850787479899999987396029
Q gi|254780170|r 114 LGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA 193 (342)
Q Consensus 114 ~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA 193 (342)
..+.|+.||+..++.+++++++. .||+|. +++..++.....+ .. ...+++.|++..+++.+|.+||||+
T Consensus 80 ~~~~~s~p~~~~~~~~~~~~~~~----~dl~~~-~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~L~~grvD~ 148 (232)
T 3i6v_A 80 EVIDFTQNYIPPTASSYVATSDG----ADLSGI-VAAQTATIQAGYI----AE--SGATLVEFATPEETIAAVRNGEADA 148 (232)
T ss_dssp TTSEEEEEEECCCEEEEEESSTT----CCTTSE-EEEETTSHHHHHH----HH--SSSEEEEESSHHHHHHHHHTTSSSE
T ss_pred HCCCEECCEECCCCEEEEECCCH----HHHCCC-CCEEECCHHHHHH----HC--CCCEEEEECCHHHHHHHHHCCCCEE
T ss_conf 31414032102661589983886----880786-0204253177776----35--6845899699899999997699509
Q ss_pred EEECCHHHHHHHHHCCCCHHHC-CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 9825047999998367800100-2564442371010002777579999887744331
Q gi|254780170|r 194 YTGDISALYALKLTNDRPSEHV-ILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV 249 (342)
Q Consensus 194 ~~~D~s~La~~~~~~~~p~~~~-il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali 249 (342)
++.|...+.......+ .... +.+.....+|++++++++|+++.+.++..+..|.
T Consensus 149 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~ 203 (232)
T 3i6v_A 149 VFADRDYLVPIVAESG--GELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMK 203 (232)
T ss_dssp EEEEHHHHHHHHHHTT--TSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHCC--CCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9972899999998669--971993267776641799980899999999999999999