HHsearch results for GI: 254780170 and protein with PDBid: 3ir1_A

>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=95.17  E-value=0.055  Score=31.49  Aligned_cols=174  Identities=12%  Similarity=0.071  Sum_probs=94.0

Q ss_pred             EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHCCCEEEEEECCCCCCCC---
Q ss_conf             49998717898830688989880150999999999967982202599814-31002677439627998124325320---
Q gi|254780170|r   35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQSKQIDILSRNTDWTLLR---  110 (342)
Q Consensus        35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~sG~vDil~~~~T~T~~R---  110 (342)
                      +|++|++.+.  ++-         .--+.++..+++.+   .+||++..+ +.+.-.||.+|++|+-+.....-++-   
T Consensus         2 ~i~vg~~~~p--~~~---------~~~e~vk~~~k~~G---i~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~   67 (245)
T 3ir1_A            2 EIVFGTTVGD--FGD---------MVKEQIQPELEKKG---YTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKK   67 (245)
T ss_dssp             EEEEEEETTH--HHH---------HHHHTHHHHHHTTT---CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHH
T ss_pred             EEEEEECCCC--HHH---------HHHHHHHHHHHHCC---CEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHH
T ss_conf             5999807898--799---------99999889999659---769999956852177998669965231227999999999


Q ss_pred             HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCCC--------------------
Q ss_conf             110278435322344023463021134753641-78620343134269999999986299--------------------
Q gi|254780170|r  111 EISLGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHNM--------------------  169 (342)
Q Consensus       111 d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~--------------------  169 (342)
                      +....+.-..+.|+.+.++.-+   ++++++|| +|.+|++....+++.-.-..+.+.|+                    
T Consensus        68 ~~g~~L~~v~~~~~~p~glYS~---k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~GlI~lk~~~~~~~~t~~DI~~N  144 (245)
T 3ir1_A           68 EHNLDITEVFQVPTAPLGLYPG---KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAEN  144 (245)
T ss_dssp             HHTCCEEEEEECCBCCCEEEES---SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEEC
T ss_pred             HCCCCEEEEEEEEECCEEEECC---CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCC
T ss_conf             8599669986654424276516---8686656799998997458658999999998789389658988664776454155


Q ss_pred             --CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC
Q ss_conf             --850787479899999987396029982504799999836780010025644423710--10002777
Q gi|254780170|r  170 --KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD  234 (342)
Q Consensus       170 --~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD  234 (342)
                        +++++..+. .+..++|  ..+|+.+....  ....+.+ +|.+..+.+.   .+||  .+++|++|
T Consensus       145 pk~l~~~ev~~-a~l~~al--~dvD~avi~~~--~~~~agl-~~~~~l~~e~---~~~y~~~~vvr~~d  204 (245)
T 3ir1_A          145 LKNIKIVELEA-AQLPRSR--ADVDFAVVNGN--YAISSGM-KLTEALFQEP---SFAYVNWSAVKTAD  204 (245)
T ss_dssp             TTCCEEEEECG-GGSGGGG--GTSSEEEECHH--HHHHTTC-CGGGCSEECC---CCTTCCEEEEEGGG
T ss_pred             CCCCEEEECCH-HHHHHHC--CCCCEEEECCH--HHHHCCC-CHHHCEEECC---CCCEEEEEEEECCC
T ss_conf             64665787688-8855532--56778997140--6978797-8234001078---88728999980766