HHsearch results for GI: 254780170 and protein with PDBid: 3ir1_A
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=95.17 E-value=0.055 Score=31.49 Aligned_cols=174 Identities=12% Similarity=0.071 Sum_probs=94.0
Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHCCCEEEEEECCCCCCCC---
Q ss_conf 49998717898830688989880150999999999967982202599814-31002677439627998124325320---
Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQSKQIDILSRNTDWTLLR--- 110 (342)
Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~sG~vDil~~~~T~T~~R--- 110 (342)
+|++|++.+. ++- .--+.++..+++.+ .+||++..+ +.+.-.||.+|++|+-+.....-++-
T Consensus 2 ~i~vg~~~~p--~~~---------~~~e~vk~~~k~~G---i~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~ 67 (245)
T 3ir1_A 2 EIVFGTTVGD--FGD---------MVKEQIQPELEKKG---YTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKK 67 (245)
T ss_dssp EEEEEEETTH--HHH---------HHHHTHHHHHHTTT---CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHH
T ss_pred EEEEEECCCC--HHH---------HHHHHHHHHHHHCC---CEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHH
T ss_conf 5999807898--799---------99999889999659---769999956852177998669965231227999999999
Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCCC--------------------
Q ss_conf 110278435322344023463021134753641-78620343134269999999986299--------------------
Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHNM-------------------- 169 (342)
Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~-------------------- 169 (342)
+....+.-..+.|+.+.++.-+ ++++++|| +|.+|++....+++.-.-..+.+.|+
T Consensus 68 ~~g~~L~~v~~~~~~p~glYS~---k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~GlI~lk~~~~~~~~t~~DI~~N 144 (245)
T 3ir1_A 68 EHNLDITEVFQVPTAPLGLYPG---KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAEN 144 (245)
T ss_dssp HHTCCEEEEEECCBCCCEEEES---SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEEC
T ss_pred HCCCCEEEEEEEEECCEEEECC---CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCC
T ss_conf 8599669986654424276516---8686656799998997458658999999998789389658988664776454155
Q ss_pred --CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC
Q ss_conf --850787479899999987396029982504799999836780010025644423710--10002777
Q gi|254780170|r 170 --KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD 234 (342)
Q Consensus 170 --~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD 234 (342)
+++++..+. .+..++| ..+|+.+.... ....+.+ +|.+..+.+. .+|| .+++|++|
T Consensus 145 pk~l~~~ev~~-a~l~~al--~dvD~avi~~~--~~~~agl-~~~~~l~~e~---~~~y~~~~vvr~~d 204 (245)
T 3ir1_A 145 LKNIKIVELEA-AQLPRSR--ADVDFAVVNGN--YAISSGM-KLTEALFQEP---SFAYVNWSAVKTAD 204 (245)
T ss_dssp TTCCEEEEECG-GGSGGGG--GTSSEEEECHH--HHHHTTC-CGGGCSEECC---CCTTCCEEEEEGGG
T ss_pred CCCCEEEECCH-HHHHHHC--CCCCEEEECCH--HHHHCCC-CHHHCEEECC---CCCEEEEEEEECCC
T ss_conf 64665787688-8855532--56778997140--6978797-8234001078---88728999980766