HHsearch results for GI: 254780170 and protein with PDBid: 3jv9_A

>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.54  E-value=0.13  Score=29.09  Aligned_cols=198  Identities=12%  Similarity=0.071  Sum_probs=115.5

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      +|.|++|+......+           +=..+.+.+.+.-  ...++++...+..+.+..|.+|++|+.+.....  .   
T Consensus         3 ~G~lrIG~~~s~~~~-----------~lp~~l~~f~~~~--P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~--~---   64 (219)
T 3jv9_A            3 EGAFKLGLIFTVAPY-----------LLPKLIVSLRRTA--PKMPLMLEENYTHTLTESLKRGDVDAIIVAEPF--Q---   64 (219)
T ss_dssp             CCCEEEEEETTTHHH-----------HHHHHHHHHHHHS--TTCCEEEEEECHHHHHHHHHHTSSSEEEEESSC--C---
T ss_pred             CEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHCCCEEEEEECCCC--C---
T ss_conf             028999977788999-----------9999999999988--892899998873777765616958887502687--7---


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCC-----C-CEEEECCHH
Q ss_conf             02784353223440234630211-----347536417862-03431342699999999862998-----5-078747989
Q gi|254780170|r  113 SLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMK-----Y-HPIVFERVE  180 (342)
Q Consensus       113 ~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~-----~-~~v~~~~~~  180 (342)
                      ..++.+. +.+.+...++++++.     ...+.+++.... +....+......+...+...+.+     . .....++..
T Consensus        65 ~~~~~~~-~l~~e~~~lv~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (219)
T 3jv9_A           65 EPGIVTE-PLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSIN  143 (219)
T ss_dssp             CTTEEEE-EEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHH
T ss_pred             CCCEEEE-EECCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHH
T ss_conf             7874898-503310899975664212245421133322774446888526789999999758985313455626778799


Q ss_pred             HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CC-CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999873960299825047999998367800100256--44-4237101000277757999988774433112123301
Q gi|254780170|r  181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DI-ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGIT  257 (342)
Q Consensus       181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~-iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git  257 (342)
                      ...+...+|-.=++.-... +   +  ..+.....++|  +. .+. .+..+.|++-. -...+++.+..+.+++-.||+
T Consensus       144 ~~~~lv~~G~Gi~~lP~~~-~---~--~~~~~~l~~~pl~~~~~~~-~i~lv~~k~~~-~~~~~~~~~~~l~~~~~~~~~  215 (219)
T 3jv9_A          144 TIRHMVASGLAISVLPATA-L---T--ENDHMLFSIIPFEGTPPSR-RVVLAYRRNFV-RPKALSAMKAAIMQSQLHGVS  215 (219)
T ss_dssp             HHHHHHHHTSCEEEEEGGG-C---C--TTCTTTEEEECCSSSCCEE-EEEEEEETTCS-CHHHHHHHHHHHHTSCCSSCE
T ss_pred             HHHHHHHCCCEEEECCHHH-H---H--HCCCCCEEEEECCCCCCEE-EEEEEEECCCC-CCHHHHHHHHHHHHHCCCCCC
T ss_conf             9999998599899871889-7---1--1427998999888998545-99999989498-899999999999973556765