HHsearch results for GI: 254780170 and protein with PDBid: 3o66_A
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp}
Probab=91.32 E-value=0.76 Score=24.30 Aligned_cols=138 Identities=13% Similarity=0.084 Sum_probs=73.2
Q ss_pred HHHHHHHHHHCCCCCEEEEEE--CCCCCCHHHHHCCCEEEEEECCCCC---C-----------------CCH--HCCCCC
Q ss_conf 999999999679822025998--1431002677439627998124325---3-----------------201--102784
Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLP--LNAKERFLALQSKQIDILSRNTDWT---L-----------------LRE--ISLGLA 117 (342)
Q Consensus 62 Dl~raiAaal~gd~~kVe~v~--~~~~~rf~aL~sG~vDil~~~~T~T---~-----------------~Rd--~~~~v~ 117 (342)
.+.+.+-..-++...+++... .+..-.+.+|.+|+||+....-|-| . .+. ...++.
T Consensus 26 ~i~~~iLe~~g~~~v~~~~~~~~g~~~~~~~al~~GdiDv~~e~w~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (282)
T 3o66_A 26 HMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQT 105 (282)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEEESSHHHHHHHHHHTSCSEEEEEEHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 99999998545983488865777628999999986997184042044577766335665787999999986565327836
Q ss_pred CCCCCCC-CCEEEEEECC----CCCCCHHHHCCC----CEEEEECCCHHH--HHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf 3532234-4023463021----134753641786----203431342699--9999998629985078747989999998
Q gi|254780170|r 118 FRPITYF-DGQGFIMHKK----KGISSVSQLSGA----SICVQAGTTTEL--TLADYFKAHNMKYHPIVFERVEEIDAAY 186 (342)
Q Consensus 118 Fs~~~~~-dgq~~lVrk~----~~i~s~~dL~G~----~I~v~~GTT~e~--~l~~~~~~~~~~~~~v~~~~~~~a~~al 186 (342)
...|..+ +.+++.|++. .+++++.||... .++...+..+.. .+....+..++...-..--+......|+
T Consensus 106 ~~~~~~~~~~~~~~v~~~~a~~~~i~~i~dl~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~a~~~~A~ 185 (282)
T 3o66_A 106 FFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDAL 185 (282)
T ss_dssp ECCCCSCBCCEEEEECHHHHHHHTCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHHHHHCCCCSEEEEECGGGHHHHH
T ss_pred EECCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 50564323455543568786334802201001333111123475444544203566654045566554222378899998
Q ss_pred HCCCEEEEEECCH
Q ss_conf 7396029982504
Q gi|254780170|r 187 RAHRCDAYTGDIS 199 (342)
Q Consensus 187 ~~Gr~DA~~~D~s 199 (342)
.+|+++++..=.+
T Consensus 186 ~~~~~~v~~~w~p 198 (282)
T 3o66_A 186 NTEKLDVALGYST 198 (282)
T ss_dssp HTTSCSEEEEETT
T ss_pred HCCCCEEEEECCC
T ss_conf 6489769980488