HHsearch results for GI: 254780170 and protein with PDBid: 3o66_A

>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp}
Probab=91.32  E-value=0.76  Score=24.30  Aligned_cols=138  Identities=13%  Similarity=0.084  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHCCCCCEEEEEE--CCCCCCHHHHHCCCEEEEEECCCCC---C-----------------CCH--HCCCCC
Q ss_conf             999999999679822025998--1431002677439627998124325---3-----------------201--102784
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLP--LNAKERFLALQSKQIDILSRNTDWT---L-----------------LRE--ISLGLA  117 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~--~~~~~rf~aL~sG~vDil~~~~T~T---~-----------------~Rd--~~~~v~  117 (342)
                      .+.+.+-..-++...+++...  .+..-.+.+|.+|+||+....-|-|   .                 .+.  ...++.
T Consensus        26 ~i~~~iLe~~g~~~v~~~~~~~~g~~~~~~~al~~GdiDv~~e~w~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (282)
T 3o66_A           26 HMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQT  105 (282)
T ss_dssp             HHHHHHHHHHTTTSCCCEEEEEESSHHHHHHHHHHTSCSEEEEEEHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHSEE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf             99999998545983488865777628999999986997184042044577766335665787999999986565327836


Q ss_pred             CCCCCCC-CCEEEEEECC----CCCCCHHHHCCC----CEEEEECCCHHH--HHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf             3532234-4023463021----134753641786----203431342699--9999998629985078747989999998
Q gi|254780170|r  118 FRPITYF-DGQGFIMHKK----KGISSVSQLSGA----SICVQAGTTTEL--TLADYFKAHNMKYHPIVFERVEEIDAAY  186 (342)
Q Consensus       118 Fs~~~~~-dgq~~lVrk~----~~i~s~~dL~G~----~I~v~~GTT~e~--~l~~~~~~~~~~~~~v~~~~~~~a~~al  186 (342)
                      ...|..+ +.+++.|++.    .+++++.||...    .++...+..+..  .+....+..++...-..--+......|+
T Consensus       106 ~~~~~~~~~~~~~~v~~~~a~~~~i~~i~dl~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~a~~~~A~  185 (282)
T 3o66_A          106 FFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDAL  185 (282)
T ss_dssp             ECCCCSCBCCEEEEECHHHHHHHTCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHHHHHCCCCSEEEEECGGGHHHHH
T ss_pred             EECCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf             50564323455543568786334802201001333111123475444544203566654045566554222378899998


Q ss_pred             HCCCEEEEEECCH
Q ss_conf             7396029982504
Q gi|254780170|r  187 RAHRCDAYTGDIS  199 (342)
Q Consensus       187 ~~Gr~DA~~~D~s  199 (342)
                      .+|+++++..=.+
T Consensus       186 ~~~~~~v~~~w~p  198 (282)
T 3o66_A          186 NTEKLDVALGYST  198 (282)
T ss_dssp             HTTSCSEEEEETT
T ss_pred             HCCCCEEEEECCC
T ss_conf             6489769980488