Query gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 342 No_of_seqs 256 out of 2355 Neff 6.3 Searched_HMMs 23785 Date Mon May 23 00:32:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780170.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2vha_A Periplasmic binding tra 100.0 0 0 313.8 16.9 231 19-251 2-236 (287) 2 2v25_A Major cell-binding fact 100.0 1.4E-43 0 295.0 17.0 240 1-248 3-246 (259) 3 1xt8_A Putative amino-acid tra 100.0 8.1E-43 0 290.2 17.9 246 1-254 1-256 (292) 4 3hv1_A Polar amino acid ABC up 100.0 1.7E-37 6.9E-42 256.5 19.9 222 16-242 3-227 (268) 5 2o1m_A Probable amino-acid ABC 100.0 1.3E-35 5.6E-40 244.4 16.1 221 24-250 6-229 (258) 6 2iee_A ORF2, probable ABC tran 100.0 5.4E-35 2.3E-39 240.6 16.4 219 21-249 8-232 (271) 7 2pvu_A ARTJ; basic amino acid 100.0 2E-34 8.5E-39 237.0 15.0 216 25-251 33-250 (272) 8 2q88_A EHUB, putative ABC tran 100.0 2.8E-33 1.2E-37 229.8 18.9 222 23-253 2-230 (257) 9 1wdn_A GLNBP, glutamine bindin 100.0 6.9E-33 2.9E-37 227.2 18.1 207 34-251 3-210 (226) 10 3h7m_A Sensor protein; histidi 100.0 1.2E-32 5.2E-37 225.6 17.9 210 31-251 8-218 (234) 11 3mpk_A Virulence sensor protei 100.0 3.8E-32 1.6E-36 222.5 18.6 224 15-248 13-238 (267) 12 3g41_A Amino acid ABC transpor 100.0 4.7E-32 2E-36 221.9 18.8 211 28-248 4-217 (246) 13 3kzg_A Arginine 3RD transport 100.0 9.6E-32 4E-36 220.0 18.9 208 33-249 2-216 (237) 14 3kbr_A Cyclohexadienyl dehydra 100.0 1.2E-31 4.9E-36 219.5 18.0 217 21-249 2-223 (239) 15 3k4u_A Binding component of AB 100.0 3.2E-31 1.3E-35 216.7 19.9 210 31-250 2-215 (245) 16 3del_B Arginine binding protei 100.0 1.7E-31 7.2E-36 218.4 18.3 208 34-251 11-220 (242) 17 1pb7_A N-methyl-D-aspartate re 100.0 1.6E-33 6.7E-38 231.3 7.2 218 23-249 30-272 (292) 18 1ii5_A Hypothetical protein SL 100.0 5.2E-30 2.2E-34 209.0 17.9 205 33-249 3-212 (233) 19 1lst_A Lysine, arginine, ornit 100.0 1.1E-29 4.7E-34 206.9 18.9 210 34-250 4-219 (239) 20 3i6v_A Periplasmic His/Glu/Gln 100.0 2.2E-28 9.1E-33 198.8 17.4 198 34-249 5-203 (232) 21 2pyy_A Ionotropic glutamate re 100.0 4.8E-28 2E-32 196.6 15.4 202 34-250 3-209 (228) 22 2a5s_A N-methyl-D-aspartate re 100.0 2.3E-28 9.6E-33 198.6 9.8 201 47-254 48-270 (284) 23 1yae_A Glutamate receptor, ion 99.9 8.5E-27 3.6E-31 188.7 10.1 214 30-253 9-277 (312) 24 1mqi_A Glutamate receptor 2; G 99.9 8.5E-26 3.6E-30 182.3 13.0 208 33-249 3-242 (263) 25 2rc8_A Glutamate [NMDA] recept 99.9 9.3E-27 3.9E-31 188.4 6.4 189 54-249 66-274 (294) 26 2v3u_A Glutamate receptor delt 99.9 8E-25 3.4E-29 176.2 14.0 207 34-250 3-245 (265) 27 3g3k_A Glutamate receptor, ion 99.9 9.5E-22 4E-26 156.7 14.3 206 33-249 3-239 (259) 28 2ozz_A Hypothetical protein YH 99.6 1.3E-14 5.4E-19 111.5 9.1 212 26-261 8-222 (231) 29 3ksx_A Nitrate transport prote 99.5 1.4E-12 5.9E-17 98.6 12.8 203 32-255 27-242 (324) 30 2x26_A Periplasmic aliphatic s 99.3 1.3E-10 5.3E-15 86.2 16.3 175 76-255 32-216 (308) 31 3kg2_A Glutamate receptor 2; I 99.2 1E-09 4.4E-14 80.4 16.0 213 32-260 382-753 (823) 32 1us5_A Putative GLUR0 ligand b 99.2 2.5E-10 1.1E-14 84.3 10.0 153 35-198 20-188 (314) 33 2de3_A Dibenzothiophene desulf 99.1 2.7E-09 1.1E-13 77.8 12.1 127 76-203 47-231 (365) 34 3n5l_A Binding protein compone 99.0 1.5E-09 6.3E-14 79.4 9.4 203 33-248 3-228 (310) 35 3ix1_A N-formyl-4-amino-5-amin 99.0 4.1E-09 1.7E-13 76.7 9.8 173 76-255 34-221 (302) 36 3hn0_A Nitrate transport prote 98.8 1.1E-08 4.7E-13 73.9 6.7 144 34-201 5-154 (283) 37 3gxa_A Outer membrane lipoprot 98.3 1.1E-05 4.4E-10 55.0 12.1 183 29-235 18-227 (275) 38 1xs5_A 29 kDa protein, membran 98.3 2.9E-06 1.2E-10 58.6 8.8 181 34-234 3-206 (241) 39 3myu_A High affinity transport 98.2 2E-07 8.6E-12 65.9 1.0 206 32-248 6-307 (344) 40 1p99_A Hypothetical protein PG 98.2 1.8E-05 7.4E-10 53.7 10.4 163 33-217 38-224 (295) 41 3k2d_A ABC-type metal ION tran 98.2 1.6E-05 6.9E-10 53.8 9.7 184 33-234 5-210 (237) 42 2g29_A Nitrate transport prote 98.0 4.3E-05 1.8E-09 51.2 10.0 185 77-264 64-279 (417) 43 2hzl_A Trap-T family sorbitol/ 97.9 6.3E-05 2.6E-09 50.1 9.3 149 61-220 52-238 (365) 44 2nxo_A Hypothetical protein SC 97.9 8.4E-06 3.5E-10 55.7 4.2 197 35-255 8-218 (291) 45 3b50_A Sialic acid-binding per 97.8 0.00035 1.5E-08 45.4 11.3 156 62-230 23-218 (310) 46 2f5x_A BUGD; periplasmic bindi 97.8 0.0019 8.2E-08 40.7 14.4 233 58-311 30-305 (312) 47 2zzv_A ABC transporter, solute 97.6 0.00031 1.3E-08 45.7 8.5 149 35-201 35-222 (361) 48 1h3d_A ATP-phosphoribosyltrans 97.6 0.00063 2.7E-08 43.8 9.8 182 77-277 47-245 (299) 49 2pfy_A Putative exported prote 97.5 0.00063 2.6E-08 43.8 8.9 156 61-230 21-213 (301) 50 2pfz_A Putative exported prote 97.5 0.0021 9E-08 40.4 11.5 157 60-230 19-212 (301) 51 2ql3_A Probable transcriptiona 97.4 0.0077 3.2E-07 36.9 13.1 181 32-235 3-193 (209) 52 2dvz_A BUGE, putative exported 97.4 0.00052 2.2E-08 44.3 7.0 141 63-203 36-202 (314) 53 3fxb_A Trap dicarboxylate tran 97.3 0.0013 5.5E-08 41.8 8.6 181 26-230 7-229 (326) 54 2hpg_A ABC transporter, peripl 97.3 0.0035 1.5E-07 39.1 10.3 175 35-230 10-233 (327) 55 2vpn_A Periplasmic substrate b 97.2 0.0014 6E-08 41.6 8.1 164 53-231 11-216 (316) 56 2i49_A Bicarbonate transporter 97.2 0.0012 5E-08 42.0 7.2 215 32-264 34-287 (429) 57 1xs5_A 29 kDa protein, membran 97.1 0.0011 4.7E-08 42.2 6.4 85 146-233 5-92 (241) 58 2qpq_A Protein BUG27; alpha/be 97.1 0.0023 9.8E-08 40.2 8.1 145 58-203 21-189 (301) 59 1nh8_A ATP phosphoribosyltrans 96.7 0.0043 1.8E-07 38.5 6.6 167 77-261 62-239 (304) 60 2rin_A Putative glycine betain 96.5 0.0071 3E-07 37.1 6.9 132 62-198 24-179 (298) 61 3gxa_A Outer membrane lipoprot 96.5 0.0047 2E-07 38.3 5.7 86 144-232 23-112 (275) 62 2vd3_A ATP phosphoribosyltrans 96.5 0.0046 1.9E-07 38.4 5.6 182 77-277 46-235 (289) 63 2hxr_A HTH-type transcriptiona 96.4 0.057 2.4E-06 31.4 14.9 188 32-244 28-225 (238) 64 1p99_A Hypothetical protein PG 96.3 0.0086 3.6E-07 36.6 6.3 86 145-232 40-127 (295) 65 3fzv_A Probable transcriptiona 96.2 0.068 2.9E-06 30.9 12.6 180 33-235 94-282 (306) 66 3l6g_A Betaine ABC transporter 96.1 0.039 1.7E-06 32.4 8.8 120 76-198 30-166 (256) 67 2b6d_A Lactotransferrin; compl 95.9 0.0079 3.3E-07 36.9 4.5 175 62-243 15-268 (345) 68 1twy_A ABC transporter, peripl 95.7 0.11 4.5E-06 29.7 9.7 128 62-191 40-199 (290) 69 3jv9_A OXYR, transcriptional r 95.5 0.13 5.6E-06 29.1 10.0 198 33-257 3-215 (219) 70 3ho7_A OXYR; beta-alpha-barrel 95.5 0.082 3.4E-06 30.4 8.3 191 33-248 10-210 (232) 71 1zbm_A Hypothetical protein AF 95.3 0.12 5.1E-06 29.3 8.7 252 33-342 9-276 (280) 72 3ir1_A Outer membrane lipoprot 95.2 0.055 2.3E-06 31.5 6.6 174 35-234 2-204 (245) 73 1al3_A Cys regulon transcripti 95.1 0.18 7.7E-06 28.2 13.6 198 62-277 110-316 (324) 74 1ixc_A CBNR, LYSR-type regulat 94.9 0.21 8.8E-06 27.8 14.3 185 31-243 88-283 (294) 75 1ryo_A Serotransferrin; iron t 94.5 0.069 2.9E-06 30.9 5.7 185 62-252 17-271 (327) 76 2esn_A Probable transcriptiona 94.3 0.29 1.2E-05 26.9 11.2 154 75-236 129-293 (310) 77 1o63_A ATP phosphoribosyltrans 94.2 0.13 5.3E-06 29.2 6.6 133 77-224 39-171 (219) 78 2czl_A Hypothetical protein TT 94.2 0.18 7.6E-06 28.2 7.4 115 76-199 30-148 (272) 79 2fyi_A HTH-type transcriptiona 94.2 0.29 1.2E-05 26.9 9.3 181 32-236 12-201 (228) 80 3ix1_A N-formyl-4-amino-5-amin 94.1 0.038 1.6E-06 32.5 3.7 58 45-103 97-159 (302) 81 3oxn_A Putative transcriptiona 94.1 0.31 1.3E-05 26.7 12.7 171 33-228 18-194 (241) 82 3ecr_A Porphobilinogen deamina 94.1 0.31 1.3E-05 26.7 10.9 148 87-242 83-239 (364) 83 2b4l_A Glycine betaine-binding 93.8 0.11 4.8E-06 29.5 5.6 83 160-258 110-195 (268) 84 2x26_A Periplasmic aliphatic s 93.6 0.28 1.2E-05 27.0 7.3 53 51-103 102-159 (308) 85 3fxq_A LYSR type regulator of 93.5 0.41 1.7E-05 26.0 14.7 196 32-249 90-296 (305) 86 1gtk_A Porphobilinogen deamina 93.4 0.42 1.8E-05 25.9 12.3 145 87-242 65-217 (313) 87 3k2d_A ABC-type metal ION tran 93.2 0.1 4.2E-06 29.8 4.6 58 146-203 8-69 (237) 88 3ir1_A Outer membrane lipoprot 92.8 0.079 3.3E-06 30.5 3.5 81 146-229 3-87 (245) 89 2vd2_A ATP phosphoribosyltrans 92.6 0.33 1.4E-05 26.5 6.5 129 77-224 48-180 (214) 90 3ksx_A Nitrate transport prote 92.6 0.34 1.4E-05 26.5 6.5 56 48-103 125-185 (324) 91 1i6a_A OXYR, hydrogen peroxide 92.0 0.13 5.4E-06 29.2 3.8 179 33-235 4-191 (219) 92 1iej_A Ovotransferrin; iron, m 91.6 0.27 1.1E-05 27.2 5.1 170 62-236 18-259 (332) 93 2h9b_A HTH-type transcriptiona 91.5 0.73 3.1E-05 24.4 13.0 166 61-243 106-284 (312) 94 3o66_A Glycine betaine/carniti 91.3 0.76 3.2E-05 24.3 8.6 138 62-199 26-198 (282) 95 2h98_A HTH-type transcriptiona 91.0 0.82 3.4E-05 24.1 15.3 189 32-248 88-289 (313) 96 1z7m_E ATP phosphoribosyltrans 90.8 0.35 1.5E-05 26.4 5.0 137 77-226 43-180 (208) 97 2hxw_A Major antigenic peptide 90.7 0.74 3.1E-05 24.4 6.6 134 62-199 17-172 (237) 98 3mpk_A Virulence sensor protei 89.2 0.52 2.2E-05 25.3 4.8 70 158-235 60-129 (267) 99 1ve4_A ATP phosphoribosyltrans 88.9 1.2 5E-05 23.0 6.6 128 76-224 45-176 (206) 100 2de3_A Dibenzothiophene desulf 88.8 0.086 3.6E-06 30.3 0.6 42 64-105 160-227 (365) 101 1uth_A LYSR-type regulatory pr 87.1 1.5 6.5E-05 22.3 11.5 145 76-231 134-286 (315) 102 1sbp_A Sulfate-binding protein 87.1 1.5 6.5E-05 22.3 10.4 123 76-199 34-194 (310) 103 1sw5_A Osmoprotection protein 86.8 1.6 6.8E-05 22.2 6.6 137 65-201 22-194 (275) 104 1h45_A Lactoferrin; metal tran 83.1 2.3 9.9E-05 21.2 6.5 186 62-253 18-277 (334) 105 3kht_A Response regulator; PSI 82.0 2.6 0.00011 20.9 6.4 58 142-199 2-60 (144) 106 2qmw_A PDT, prephenate dehydra 79.3 2.7 0.00011 20.8 4.8 128 48-196 7-147 (267) 107 3cvg_A Putative metal binding 77.9 3.5 0.00015 20.1 5.0 74 61-134 32-113 (294) 108 2d3i_A Ovotransferrin; aluminu 77.8 3.5 0.00015 20.1 5.1 86 60-151 354-456 (686) 109 3fd3_A Chromosome replication 75.5 4.1 0.00017 19.7 10.5 146 33-198 1-153 (208) 110 2i6e_A Hypothetical protein; N 75.1 4.2 0.00017 19.6 5.6 173 77-265 39-238 (301) 111 1vr5_A Oligopeptide ABC transp 75.0 4 0.00017 19.7 4.7 30 172-201 214-243 (547) 112 1r9l_A Glycine betaine-binding 73.7 4.5 0.00019 19.4 6.3 134 62-199 25-190 (309) 113 3mwb_A Prephenate dehydratase; 73.1 2.8 0.00012 20.7 3.5 129 46-189 8-147 (313) 114 1b43_A Protein (FEN-1); nuclea 70.9 5.2 0.00022 19.0 4.7 135 158-314 133-268 (340) 115 3omb_A Extracellular solute-bi 70.5 2.5 0.0001 21.0 2.8 42 60-104 57-103 (535) 116 3op9_A PLI0006 protein; struct 68.2 3.4 0.00014 20.2 3.0 54 236-297 16-69 (114) 117 2qmx_A Prephenate dehydratase; 67.3 6.2 0.00026 18.5 5.8 133 47-207 9-158 (283) 118 3c9h_A ABC transporter, substr 66.6 6.4 0.00027 18.4 10.4 104 173-277 210-319 (355) 119 3luy_A Probable chorismate mut 62.9 7.5 0.00032 18.0 6.2 111 76-206 36-163 (329) 120 2pju_A Propionate catabolism o 61.7 7.9 0.00033 17.8 6.8 146 44-201 5-165 (225) 121 1blf_A Lactoferrin; transferri 58.8 8.9 0.00037 17.5 7.4 171 61-237 355-605 (689) 122 3mc2_A Inhibitor of carbonic a 55.9 9.9 0.00042 17.2 7.0 88 60-151 351-459 (687) 123 2ict_A Antitoxin HIGA; helix-t 55.3 8.8 0.00037 17.6 3.3 55 237-299 16-70 (94) 124 1atg_A MODA, periplasmic molyb 54.2 11 0.00044 17.0 11.7 136 62-200 16-167 (231) 125 1cb6_A Protein (lactoferrin); 53.8 11 0.00045 17.0 6.7 22 130-151 440-461 (691) 126 1pot_A POTD, spermidine/putres 49.9 12 0.00052 16.6 7.5 194 62-261 18-275 (325) 127 1u7z_A Coenzyme A biosynthesis 48.4 13 0.00055 16.5 4.0 19 180-198 156-174 (226) 128 3f6w_A XRE-family like protein 48.3 12 0.0005 16.7 3.0 45 251-301 34-78 (83) 129 3gzg_A Molybdate-binding perip 45.5 14 0.00061 16.2 10.8 135 62-199 39-192 (253) 130 2p8j_A S-adenosylmethionine-de 45.1 12 0.00049 16.7 2.6 68 35-107 27-100 (209) 131 1xvx_A YFUA; periplasmic iron 44.9 15 0.00062 16.1 13.6 135 62-200 20-199 (312) 132 2r1j_L Repressor protein C2; p 44.9 14 0.0006 16.2 3.0 54 237-298 13-66 (68) 133 2qry_A Thiamine-binding peripl 43.6 15 0.00065 16.0 13.9 201 32-245 21-270 (330) 134 1h76_A Serotransferrin; iron t 42.2 16 0.00068 15.9 6.6 37 62-101 357-394 (696) 135 3ivp_A Putative transposon-rel 41.8 13 0.00055 16.5 2.4 11 181-191 40-50 (126) 136 3cec_A Putative antidote prote 41.7 15 0.00064 16.0 2.7 55 237-299 26-80 (104) 137 2ewt_A BLDD, putative DNA-bind 41.3 9 0.00038 17.5 1.5 52 237-296 16-69 (71) 138 2voz_A FUTA2, periplasmic iron 39.6 18 0.00075 15.6 4.9 224 76-304 55-344 (346) 139 1wn9_A The hypothetical protei 39.2 12 0.00051 16.7 1.9 31 220-257 57-87 (131) 140 3f52_A CLP gene regulator (CLG 39.0 17 0.0007 15.8 2.6 53 237-297 36-88 (117) 141 1y7y_A C.AHDI; helix-turn-heli 37.8 15 0.00065 16.0 2.3 52 237-296 21-72 (74) 142 1adr_A P22 C2 repressor; trans 37.5 19 0.00081 15.4 3.0 43 250-298 24-66 (76) 143 2kpj_A SOS-response transcript 37.4 16 0.00066 15.9 2.3 42 250-297 28-69 (94) 144 3ek3_A Nitroreductase; YP_2117 37.0 10 0.00044 17.1 1.3 46 235-280 108-156 (190) 145 3kxa_A NGO0477 protein, putati 36.3 19 0.00078 15.5 2.5 58 236-301 75-132 (141) 146 3lpm_A Putative methyltransfer 35.7 20 0.00086 15.2 4.7 71 35-106 53-129 (259) 147 3omt_A Uncharacterized protein 35.5 13 0.00053 16.5 1.5 53 236-296 15-67 (73) 148 3bs3_A Putative DNA-binding pr 34.7 13 0.00056 16.4 1.5 51 238-296 19-69 (76) 149 3mlf_A Transcriptional regulat 34.7 13 0.00057 16.4 1.6 53 236-296 30-82 (111) 150 2noo_A NIKA, nickel-binding pe 34.6 21 0.00088 15.2 2.5 26 171-196 194-219 (502) 151 2k9q_A Uncharacterized protein 33.7 21 0.00089 15.1 2.4 38 240-277 11-48 (77) 152 3bdn_A Lambda repressor; repre 32.3 18 0.00075 15.6 1.9 13 59-71 57-69 (236) 153 1vmd_A MGS, methylglyoxal synt 32.2 23 0.00098 14.9 3.5 53 138-196 47-104 (178) 154 3clc_A Regulatory protein; pro 32.2 23 0.00098 14.9 2.6 48 243-298 25-72 (82) 155 3hhg_A Transcriptional regulat 31.8 13 0.00056 16.4 1.2 147 78-235 122-277 (306) 156 3eod_A Protein HNR; response r 31.4 24 0.001 14.8 6.7 55 143-199 5-60 (130) 157 2b5a_A C.BCLI; helix-turn-heli 31.0 24 0.001 14.7 3.7 44 250-299 29-72 (77) 158 1b0n_A Protein (SINR protein); 31.0 24 0.001 14.7 2.4 40 251-296 21-61 (111) 159 3kz3_A Repressor protein CI; f 30.6 17 0.00071 15.7 1.5 41 250-296 31-71 (80) 160 1rxw_A Flap structure-specific 29.8 26 0.0011 14.6 6.3 132 158-312 132-264 (336) 161 1utx_A CYLR2; DNA-binding prot 28.1 27 0.0011 14.4 2.5 51 237-295 9-59 (66) 162 1xxl_A YCGJ protein; structura 27.5 28 0.0012 14.4 3.5 68 35-106 25-97 (239) 163 3dr5_A Putative O-methyltransf 27.4 28 0.0012 14.4 3.2 70 34-103 59-136 (221) 164 2fjr_A Repressor protein CI; g 27.0 29 0.0012 14.3 2.7 13 121-133 117-129 (189) 165 1r69_A Repressor protein CI; g 26.9 27 0.0011 14.5 2.0 52 238-298 10-61 (69) 166 2gpy_A O-methyltransferase; st 26.5 29 0.0012 14.3 2.3 73 30-103 53-133 (233) 167 3f9i_A 3-oxoacyl-[acyl-carrier 26.4 29 0.0012 14.2 6.8 13 95-107 83-95 (249) 168 2eby_A Putative HTH-type trans 26.4 29 0.0012 14.2 2.8 43 250-298 30-72 (113) 169 2rjn_A Response regulator rece 25.7 30 0.0013 14.2 5.8 55 143-199 5-60 (154) 170 2ji4_A Phosphoribosyl pyrophos 25.2 31 0.0013 14.1 6.3 117 61-198 42-177 (379) 171 1zug_A Phage 434 CRO protein; 25.1 30 0.0013 14.2 2.0 42 250-298 22-63 (71) 172 2qm3_A Predicted methyltransfe 25.1 31 0.0013 14.1 3.7 14 171-184 196-209 (373) 173 1wo8_A Methylglyoxal synthase; 24.7 31 0.0013 14.0 3.6 53 138-196 21-78 (126) 174 2jna_A Putative secreted prote 23.4 0.87 3.7E-05 23.9 -6.2 34 1-34 1-34 (104) 175 2v84_A Spermidine/putrescine A 23.0 34 0.0014 13.8 6.0 207 34-260 25-298 (343) 176 2yvq_A Carbamoyl-phosphate syn 23.0 34 0.0014 13.8 3.5 51 140-196 43-102 (143) 177 2a3m_A COG3005: nitrate/TMAO r 22.0 16 0.00065 16.0 0.0 19 1-19 1-19 (130) 178 2a6c_A Helix-turn-helix motif; 21.8 36 0.0015 13.7 1.9 27 251-277 38-65 (83) 179 3b7h_A Prophage LP1 protein 11 21.8 36 0.0015 13.7 2.1 51 238-296 16-67 (78) 180 1ixh_A Phosphate-binding prote 21.6 27 0.0012 14.4 1.2 56 76-132 29-84 (321) 181 1cyd_A Carbonyl reductase; sho 21.3 37 0.0015 13.6 8.6 13 95-107 75-87 (244) 182 3m6m_D Sensory/regulatory prot 21.3 37 0.0015 13.6 5.7 60 138-199 7-67 (143) 183 3eki_A High affinity transport 20.8 24 0.001 14.8 0.8 117 132-251 232-370 (403) 184 3gem_A Short chain dehydrogena 20.7 38 0.0016 13.5 6.1 164 136-316 18-190 (260) No 1 >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Probab=100.00 E-value=0 Score=313.77 Aligned_cols=231 Identities=19% Similarity=0.267 Sum_probs=214.6 Q ss_pred HCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCC----CCEEEEEECCCCCCHHHHHC Q ss_conf 01244216899985794999871789883068898988015099999999996798----22025998143100267743 Q gi|254780170|r 19 SFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDD----PSKIQYLPLNAKERFLALQS 94 (342) Q Consensus 19 ~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd----~~kVe~v~~~~~~rf~aL~s 94 (342) ++++++++|++|+++|+|+||++.++|||+|.|++|+++||+|||+++||+.++.+ ..+|+|++++|..++.+|++ T Consensus 2 ~~~aa~~~l~~i~~~g~l~Vg~~~~~~P~~~~d~~G~~~G~~vDl~~~ia~~l~~~l~~~~~~v~~~~~~~~~~~~~L~~ 81 (287) T 2vha_A 2 AAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQN 81 (287) T ss_dssp -CCCTTSHHHHHHHHTEEEEEECSEETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHT T ss_pred CCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHC T ss_conf 86655210999970998999986898893689999988886699999999997477377870699998799999999986 Q ss_pred CCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEE Q ss_conf 96279981243253201102784353223440234630211347536417862034313426999999998629985078 Q gi|254780170|r 95 KQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPI 174 (342) Q Consensus 95 G~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v 174 (342) |++|++++++++|.+|+ ..+.|+.||++.++++++|+++++++++||+|++|||..||+++..+.+++...+..++++ T Consensus 82 G~~Di~~~~~~~t~~R~--~~~~fs~p~~~~~~~l~~~k~~~i~~~~dL~g~~v~v~~gs~~~~~l~~~~~~~~~~~~iv 159 (287) T 2vha_A 82 GTFDFECGSTTNNVERQ--KQAAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRII 159 (287) T ss_dssp TSCSEECSSCBCCHHHH--TTCEEEEEEEEEEEEEEEETTSSCCSGGGGTTCEEEEETTSHHHHHHHHHHHHTTCCCEEE T ss_pred CCCCEEECCCCCCHHHH--HHCCCCCCCCCCCCEEEEECCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEE T ss_conf 99643411344664565--4324554300047257775489878987808981221378669999999888737896346 Q ss_pred EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 74798999999873960299825047999998367800100256444237101000277757999988774433112 Q gi|254780170|r 175 VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA 251 (342) Q Consensus 175 ~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A 251 (342) .|++..++++++.+||||+++.|.+.+.........++.+.++++.++++|++++|+++|++|.+.++..+..|.+- T Consensus 160 ~~~~~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~av~k~~~~L~~~in~~l~~l~~~ 236 (287) T 2vha_A 160 SAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTS 236 (287) T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHT T ss_pred ECCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 52217899999986994099961499999999657888679937877763189999489999999999999999978 No 2 >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Probab=100.00 E-value=1.4e-43 Score=295.00 Aligned_cols=240 Identities=25% Similarity=0.323 Sum_probs=209.8 Q ss_pred CHHHHHHHHHHHHH---HHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECC-CCCEEEEHHHHHHHHHHHHCCCCC Q ss_conf 91389999999999---99840124421689998579499987178988306889-898801509999999999679822 Q gi|254780170|r 1 MYKDFFVSILCLII---LFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKA-NGDWKGFDVDFCRALSSAIFDDPS 76 (342) Q Consensus 1 M~K~~l~~~l~l~~---~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~-~G~~~GfDVDl~raiAaal~gd~~ 76 (342) |+|.++..+ ++++ +.+.++.++.++|++|+++|+|+||+..++|||+|.|. +|++.||++|+++++|..+++... T Consensus 3 ~~k~l~~~~-~~~l~~~~~~~~~~~a~~~l~~i~~~~~l~V~~~~~~pP~~~~d~~~g~~~G~~~di~~~ia~~~~~~~~ 81 (259) T 2v25_A 3 FRKSLLKLA-VFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDK 81 (259) T ss_dssp ---------------------------CHHHHHHHHTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTT T ss_pred HHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCCC T ss_conf 379999999-9999999872331113265999960998999982897883246678984888986476568887278875 Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCH Q ss_conf 02599814310026774396279981243253201102784353223440234630211347536417862034313426 Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTT 156 (342) Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~ 156 (342) +|++++.+|..+++++++|++|+.+.+++.|++|+ ..++|+.||+.++..+++++++++++++||+|++|||+.||+. T Consensus 82 ~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~--~~~~fs~p~~~~~~~~~~~~~~~i~s~~dL~g~~I~v~~gs~~ 159 (259) T 2v25_A 82 KIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERK--RIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATT 159 (259) T ss_dssp SEEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHH--TTEEECSCSEEEEEEEEEEGGGCCCSGGGCTTCEEEEETTCSH T ss_pred EEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHH--HCEEECEEEECCCCCEEEECCCCCCCHHHHCCCCCCEECCCCH T ss_conf 79999833775899997699660033366897881--0114220344045430220357979978926985002347707 Q ss_pred HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH Q ss_conf 99999999862998507874798999999873960299825047999998367800100256444237101000277757 Q gi|254780170|r 157 ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE 236 (342) Q Consensus 157 e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~ 236 (342) +..+.++++..+++++++.|++.++++.+|.+|||||++.|...+..+. ...+.++++.++.||++++++++|++ T Consensus 160 ~~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~g~vDa~i~d~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~k~~~~ 234 (259) T 2v25_A 160 KKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYV-----DDKSEILPDSFEPQSYGIVTKKDDPA 234 (259) T ss_dssp HHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTC-----CTTEEECSCCCSEEEECCEEETTCHH T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEEECCHHHHHHHH-----HHCCCCCCCCCCCEEEEEEEECCCHH T ss_conf 7889999987088444421420788876542783789973599999999-----73974357877732699999589999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999988774433 Q gi|254780170|r 237 WYNIVSWTHYAM 248 (342) Q Consensus 237 w~d~V~W~~~al 248 (342) |.+.++..+..| T Consensus 235 l~~~ln~~l~~~ 246 (259) T 2v25_A 235 FAKYVDDFVKEH 246 (259) T ss_dssp HHHHHHHHHHHT T ss_pred HHHHHHHHHHHH T ss_conf 999999999982 No 3 >1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Probab=100.00 E-value=8.1e-43 Score=290.17 Aligned_cols=246 Identities=22% Similarity=0.299 Sum_probs=208.6 Q ss_pred CHHHHHHHHHHHHHHHHHHCC----------CCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHH Q ss_conf 913899999999999984012----------4421689998579499987178988306889898801509999999999 Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFS----------TNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSA 70 (342) Q Consensus 1 M~K~~l~~~l~l~~~~~~~~a----------a~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaa 70 (342) ||..+-.++++++++++.++. ..+++|++|+++|+|+||+..++|||+|.|++|+++||++|++++||++ T Consensus 1 ~k~~~~~~~~~l~l~~~~~~~a~~~~~~~~~~~~~~l~~i~~~g~l~Vgv~~~~pP~~~~d~~G~~~G~~~Dl~~~ia~~ 80 (292) T 1xt8_A 1 MKYLLPTAAAGLLLLAAQPAMAMASGGNSDSKTLNSLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKE 80 (292) T ss_dssp ---------------------------------CCHHHHHHHHSSEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHH T ss_conf 94189999999999999999997257876666557199986099899998589899069999998873068999999998 Q ss_pred HCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEE Q ss_conf 67982202599814310026774396279981243253201102784353223440234630211347536417862034 Q gi|254780170|r 71 IFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICV 150 (342) Q Consensus 71 l~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v 150 (342) ++++..+|+|++++|.+++.+|.+|++|+.++++++|++|+. .++|+.|||.+++.+++++++++++++||+|++||| T Consensus 81 Lg~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~R~~--~~~fs~py~~~~~~~~~~~~~~i~~~~dL~g~~V~v 158 (292) T 1xt8_A 81 LFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAE--QVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLL 158 (292) T ss_dssp HHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHT--TEEECCCCEEEEEEEEEETTCCCCSSGGGTTSEEEE T ss_pred HCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHC--CCCCCCCEEECCCEEEEECCCCCCCHHHHHHCEEEE T ss_conf 558971799996347868999986997711355656711210--246675347415137872245767477770066775 Q ss_pred EECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC Q ss_conf 31342699999999862998507874798999999873960299825047999998367800100256444237101000 Q gi|254780170|r 151 QAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI 230 (342) Q Consensus 151 ~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av 230 (342) +.|++.+..+ .++..+++++.|++.++++++|.+|+||+++.|.+.+...... +|+...+.++.++++|++++| T Consensus 159 ~~g~~~~~~l----~~~~~~~~~v~~~~~~~~~~~l~~G~vDa~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iav 232 (292) T 1xt8_A 159 NKGTTADAYF----TQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKD--HPDFKMGIKELGNKDVIAPAV 232 (292) T ss_dssp ETTSHHHHHH----HHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHH--CTTEEEEEEEEEEEEEECCEE T ss_pred ECCCHHHHHH----HHHHHHHHHEEECCCCCHHHHHHCCCEEEEEECHHHHHHHHHH--CCCCEEECCCCCCCCEEEEEE T ss_conf 1585899999----9710000000000222011244369369999569999999997--899789414678773399999 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 277757999988774433112123 Q gi|254780170|r 231 IQGDTEWYNIVSWTHYAMVTAEEL 254 (342) Q Consensus 231 r~gD~~w~d~V~W~~~ali~Aee~ 254 (342) |++|++|.+.++..+..|.+-.++ T Consensus 233 ~k~~~~L~~~ln~~l~~l~~~G~~ 256 (292) T 1xt8_A 233 KKGDKELKEFIDNLIIKLGQEQFF 256 (292) T ss_dssp ETTCHHHHHHHHHHHHHHHTTTHH T ss_pred ECCCHHHHHHHHHHHHHHHHCCHH T ss_conf 799999999999999999977869 No 4 >3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Probab=100.00 E-value=1.7e-37 Score=256.52 Aligned_cols=222 Identities=16% Similarity=0.181 Sum_probs=195.9 Q ss_pred HHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCC Q ss_conf 98401244216899985794999871789883068898988015099999999996798220259981431002677439 Q gi|254780170|r 16 FFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK 95 (342) Q Consensus 16 ~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG 95 (342) +.++.+...+++++++++++|+||++.++|||+|.|++|+++||++|+++++++.++ .+++|++++|..++.+|.+| T Consensus 3 ~~~~~a~~~~~~~~~~~~~~l~vg~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~lg---~~v~~~~~~~~~~~~~l~~g 79 (268) T 3hv1_A 3 LRSHFATQKDQWQTYTKEKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKLYG---IDVEWQAIDWDMKETELKNG 79 (268) T ss_dssp -CCTTGGGSCCHHHHHHHTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHTTT---CEEEEEECCGGGHHHHHHHT T ss_pred CCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEECCCCHHHHHHHHHCC T ss_conf 665344544159998609979999878988955899999888729999999999969---96575158889999999869 Q ss_pred CEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHH---HHHCCCCCC Q ss_conf 62799812432532011027843532234402346302113475364178620343134269999999---986299850 Q gi|254780170|r 96 QIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADY---FKAHNMKYH 172 (342) Q Consensus 96 ~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~---~~~~~~~~~ 172 (342) ++|++++.+++|++|+ ..+.|+.||+++...+++|+++++++++||+|++|||..||+....+... .+......+ T Consensus 80 ~~Di~~~~~~~~~~r~--~~~~~s~py~~~~~~~v~~~~~~~~~~~dl~~~~i~v~~gs~~~~~~~~~~~~~~~~~~~~~ 157 (268) T 3hv1_A 80 TIDLIWNGYSVTDERK--QSADFTEPYMVNEQVLVTKKSSGIDSVAGMAGKTLGAQAGSSGYDAFNASPKILKDVVANQK 157 (268) T ss_dssp SCSEECSSCBCCHHHH--TTCEECCCCEEECEEEEEEGGGCCCSSGGGTTCCEEEETTCHHHHHHHHCTTTTTTTSGGGC T ss_pred CCCCCCCCCCCCHHHH--HCEEECCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCE T ss_conf 9760023266785444--11563212135643689868999999789579823886685099999986655543166732 Q ss_pred EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHH Q ss_conf 7874798999999873960299825047999998367800100256444237101000277757999988 Q gi|254780170|r 173 PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVS 242 (342) Q Consensus 173 ~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~ 242 (342) ++.|++..+++.+|.+||||+++.|...+.......+..+.+.+++..++.+|++++++++|++|.+.++ T Consensus 158 i~~~~~~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in 227 (268) T 3hv1_A 158 VVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKIN 227 (268) T ss_dssp EEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHH T ss_pred EEECCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHH T ss_conf 4403999999999976975799943899999998589888303337777774389998189999999999 No 5 >2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Probab=100.00 E-value=1.3e-35 Score=244.43 Aligned_cols=221 Identities=14% Similarity=0.204 Sum_probs=186.9 Q ss_pred CHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC Q ss_conf 21689998579499987178988306889898801509999999999679822025998143100267743962799812 Q gi|254780170|r 24 ASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN 103 (342) Q Consensus 24 a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~ 103 (342) ..+....++.++|+||++.++|||+|.|++|+++||++|+++++|+.+.| .+++|++++|..++..|++|++|+++++ T Consensus 6 ~~~~a~~~~~~~i~V~~~~~~pP~~~~~~~g~~~G~~vDl~~~ia~~l~g--~~v~~~~~~~~~~~~~l~~g~~D~i~~~ 83 (258) T 2o1m_A 6 QTTGAGQKKVQTITVGTGTQFPNICFIDEKGDLTGYDVELIKELDKRLPH--YKFTFKTMEFSNLLVSLGQHKVDIVAHQ 83 (258) T ss_dssp --------CCEEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHCTT--EEEEEEECCHHHHHHHHHTTSSSEEEEE T ss_pred CCCCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCCEEEEC T ss_conf 55655456699899998999798069999996887599999999987289--8589997899999999977998889634 Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCEEEE-EECC-CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCE-EEECCHH Q ss_conf 432532011027843532234402346-3021-134753641786203431342699999999862998507-8747989 Q gi|254780170|r 104 TDWTLLREISLGLAFRPITYFDGQGFI-MHKK-KGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHP-IVFERVE 180 (342) Q Consensus 104 ~T~T~~Rd~~~~v~Fs~~~~~dgq~~l-Vrk~-~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~ 180 (342) +++|++|+.. ++|+.|+|+....++ ++++ ..+++++||+|++||++.||+.+..+..+...++..... +.+++.+ T Consensus 84 ~~~~~er~~~--~~fs~~~~~~~~~~~~~~~~~~~i~~~~dL~gk~igv~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (258) T 2o1m_A 84 MEKSKEREKK--FLFNKVAYNHFPLKITVLQNNDTIRGIEDLKGKRVITSATSNGALVLKKWNEDNGRPFEIAYEGQGAN 161 (258) T ss_dssp ECCCHHHHHH--CEECSSCCEEEEEEEEEETTCCSCSSGGGCTTCEEEECSSSHHHHHHHHHHHHTTCCSEEEECCSSTT T ss_pred CCCCHHHHHH--CCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCHH T ss_conf 7678788753--13675422355428998513676551544579889870787499999999997188742010368899 Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999987396029982504799999836780010025644423710100027775799998877443311 Q gi|254780170|r 181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT 250 (342) Q Consensus 181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~ 250 (342) +++.+|.+||+|+++.|...+...... .+.+..++.+.+..+|++++++++|++|.+.++..+..|.. T Consensus 162 ~~~~~L~~grvD~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~ln~~l~~~~~ 229 (258) T 2o1m_A 162 ETANQLKSGRADATISTPFAVDFQNKT--STIKEKTVGNVLSNAKVYFMFNKNEQTLSDDIDKALQEIID 229 (258) T ss_dssp HHHHHHHHTSCSBEEECHHHHHHHHHH--CSSCEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCEEEEEECHHHHHHHHHH--CCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 999998659546999169999999852--78865881566777518999959999999999999999996 No 6 >2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Probab=100.00 E-value=5.4e-35 Score=240.57 Aligned_cols=219 Identities=16% Similarity=0.103 Sum_probs=183.6 Q ss_pred CCCCHHHHHHHHCCEEEEEEECCCCCCEEECC---CCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCE Q ss_conf 24421689998579499987178988306889---898801509999999999679822025998143100267743962 Q gi|254780170|r 21 STNASILGDIKKRGFLKCGINTGLVGFAEVKA---NGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQI 97 (342) Q Consensus 21 aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~---~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~v 97 (342) ++....+++|+++|+|+||++.++|||+|.|. +|+++||++|+++++++.++ .+++|++++|+.++.+|++|++ T Consensus 8 ~~~~~~~~~i~~~~~l~V~~~~~~~P~~~~~~~~~~g~~~G~~vDl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~ 84 (271) T 2iee_A 8 DSKDTGWEQIKDKGKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLG---LKVEFKEMGIDGMLTAVNSGQV 84 (271) T ss_dssp ----CCHHHHHHHTEEEEEECSCBTTTBEEETTTTCCEEECHHHHHHHHHHHHTT---CEEEEEECCSTTHHHHHHHTSS T ss_pred CCCCCHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCC T ss_conf 7776539998449979999889988967883689999678879999999999839---9648998999999999976997 Q ss_pred EEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECC--CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEE Q ss_conf 7998124325320110278435322344023463021--13475364178620343134269999999986299850787 Q gi|254780170|r 98 DILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKK--KGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIV 175 (342) Q Consensus 98 Dil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~--~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~ 175 (342) |+++++++++.+|. ..+.|+.||++.+..++++++ +.+++++||+|++||+..|+..+..+ +.......++. T Consensus 85 D~~~~~~~~~~~r~--~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~dl~g~~v~v~~g~~~~~~l----~~~~~~~~i~~ 158 (271) T 2iee_A 85 DAAANDIDVTKDRE--EKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAAGAATTVYMEVA----RKYGAKEVIYD 158 (271) T ss_dssp SEECSSCBCCHHHH--TTEEECCCSEEEEEEEEECTTTGGGCSSGGGGTTCEEESCTTSHHHHHH----HHTTCEEEECS T ss_pred CEEECCCCCCHHHH--HHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCEEEECCCCHHHHHH----HHCCCCCEEEE T ss_conf 74402454687887--6542056622157623675047777798788079458971685899999----97089858998 Q ss_pred ECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCCCCCEEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 4798999999873960299825047999998367800100256-4442371010002777579999887744331 Q gi|254780170|r 176 FERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIISKSPLAPAIIQGDTEWYNIVSWTHYAMV 249 (342) Q Consensus 176 ~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~iskEPlg~avr~gD~~w~d~V~W~~~ali 249 (342) +++..+++.+|.+||||+++.|...+.......+... ..+.+ ..+..+|++++++++|++|.+.++..+..|. T Consensus 159 ~~s~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~L~~~ln~~l~~i~ 232 (271) T 2iee_A 159 NATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLN-ITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMS 232 (271) T ss_dssp SCCHHHHHHHHHHTSSCEEEEEHHHHHHHHHHCTTSS-CEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHH T ss_pred ECCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC-EEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHH T ss_conf 2360889999976953499924999999998689974-6866676656612899994899999999999999999 No 7 >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Probab=100.00 E-value=2e-34 Score=236.96 Aligned_cols=216 Identities=18% Similarity=0.134 Sum_probs=182.1 Q ss_pred HHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECC Q ss_conf 16899985794999871789883068898988015099999999996798220259981431002677439627998124 Q gi|254780170|r 25 SILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNT 104 (342) Q Consensus 25 ~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~ 104 (342) +..+.+.++++|+||++.++|||+|.+ +|+++||++|++++||+.++ .+++|++++|..++..|++|++|++++++ T Consensus 33 ~~~~~~~~~~~l~Vg~~~~~~P~~~~~-~G~~~G~~vDl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~d~~~~~~ 108 (272) T 2pvu_A 33 SGGDGGATKKKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAG---LDYELKNIGWDPLFASLQSKEVDMGISGI 108 (272) T ss_dssp -----CCCCCCEEEEECCCBTTTBEEE-TTEEESHHHHHHHHHHHHHT---CCEEEEECCHHHHHHHHHHTSSSEECSSC T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEE-CCEEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEECC T ss_conf 666555558989999899878935856-99778819999999999809---96599977989999999759966895145 Q ss_pred CCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHH Q ss_conf 32532011027843532234402346302113475364178620343134269999999986299850787479899999 Q gi|254780170|r 105 DWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDA 184 (342) Q Consensus 105 T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~ 184 (342) ++|++|+. .++|+.|||+++..+++|+++.+++..+|.|++|+++.|++.+..+..++. ...+++.+++..+++. T Consensus 109 ~~t~~R~~--~~~~s~p~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~g~~~~~~~~~~~~---~~~~i~~~~~~~~~~~ 183 (272) T 2pvu_A 109 TITDERKQ--SYDFSDPYFEATQVILVKQGSPVKNALDLKGKTIGVQNATTGQEAAEKLFG---KGPHIKKFETTVVAIM 183 (272) T ss_dssp BCCHHHHT--TEEECSCCEEECEEEEEETTCCCCSGGGGTTSCEEEETTSHHHHHHHHHHC---SSTTEEEESSHHHHHH T ss_pred CCCHHHHC--CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHC---CCCEEEECCCHHHHHH T ss_conf 57877741--055674630563789974487678858867985776257639999998734---4873430420899999 Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9873960299825047999998367800100256--444237101000277757999988774433112 Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA 251 (342) Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A 251 (342) +|.+||+|+++.|...+.......++ ....++. ..++.+++++++++ |++|.+.++..+..|.+- T Consensus 184 ~l~~GrvD~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~ln~al~~~~~d 250 (272) T 2pvu_A 184 ELLNGGVDAVITDNAVANEYVKNNPN-KKLQVIEDPKNFASEYYGMIFPK-NSELKAKVDEALKNVINS 250 (272) T ss_dssp HHHTTSCSEEEEEHHHHHHHHHHCGG-GCEEEECCTTTSCCEEECCEEET-TCTTHHHHHHHHHHHHHT T ss_pred HHHCCCCCEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHC T ss_conf 99859811652665989999985899-87699516766676159999789-989999999999999969 No 8 >2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Probab=100.00 E-value=2.8e-33 Score=229.77 Aligned_cols=222 Identities=17% Similarity=0.167 Sum_probs=179.9 Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEE Q ss_conf 42168999857949998717898830688989880150999999999967982202599814310026774396279981 Q gi|254780170|r 23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSR 102 (342) Q Consensus 23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~ 102 (342) ..++|++|+++|+||||+ .++|||+|.|++|+++||++|+++++|+.++.. .+.+...+|..++.+|++|++|++++ T Consensus 2 ~~~~l~~i~~~g~lrV~~-~~~pP~~~~~~~G~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~~~~~l~~g~~D~~~~ 78 (257) T 2q88_A 2 DENKLEELKEQGFARIAI-ANEPPFTAVGADGKVSGAAPDVAREIFKRLGVA--DVVASISEYGAMIPGLQAGRHDAITA 78 (257) T ss_dssp CTTHHHHHHHHTEEEEEE-CCCTTTCEECTTCCEESHHHHHHHHHHHHTTCC--EEEEEECCGGGHHHHHHTTSCSEECS T ss_pred CCCHHHHHHCCCEEEEEE-CCCCCCEEECCCCCEEEHHHHHHHHHHHHHCCC--EEEEECCCHHHHHHHHHCCCCCEEEE T ss_conf 645899998299699998-689994479999988878999999999993997--79984699999999997599884776 Q ss_pred CCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC--C---CCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEC Q ss_conf 2432532011027843532234402346302113--4---7536417862034313426999999998629985078747 Q gi|254780170|r 103 NTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG--I---SSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFE 177 (342) Q Consensus 103 ~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~--i---~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~ 177 (342) ++++|++|. ..++|+.||+..++.+++++++. + .++.++.|++|++..|++.+..+. .......+++.|+ T Consensus 79 ~~~~t~~r~--~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~~~---~~~~~~~~i~~~~ 153 (257) T 2q88_A 79 GLFMKPERC--AAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLAL---EAGVPRDRVIVVP 153 (257) T ss_dssp CCBCCHHHH--TTSEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHH---HTTCCGGGEEECS T ss_pred EEECCHHHC--CHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHH---HCCCCCCCEEEEH T ss_conf 434154324--31005866112673146753641133313345414785699835856999999---8189866223200 Q ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC--CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9899999987396029982504799999836780010025644--423710100027775799998877443311212 Q gi|254780170|r 178 RVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI--ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEE 253 (342) Q Consensus 178 ~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~--iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee 253 (342) +.++++.+|.+||+|+++.|...+.........++ ..+.... ....+++++++++|+++.+.++..+..|..-.+ T Consensus 154 ~~~~~~~~l~~GrvD~~v~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~k~~~~L~~~in~~l~~~~~~G~ 230 (257) T 2q88_A 154 DGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPN-VEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGE 230 (257) T ss_dssp SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTT-EEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTH T ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC-EEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH T ss_conf 16788899876964799965999999998479998-699615667763116899889999999999999999996949 No 9 >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Probab=100.00 E-value=6.9e-33 Score=227.25 Aligned_cols=207 Identities=20% Similarity=0.237 Sum_probs=180.1 Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC Q ss_conf 94999871789883068898988015099999999996798220259981431002677439627998124325320110 Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS 113 (342) Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~ 113 (342) .+|+||++.++|||+|.+ +|+++||++|+++++|+.++ .+++|++++|..++.+|.+|++|++++++++|++|+ T Consensus 3 k~l~v~~~~~~pP~~~~~-~g~~~G~~~dl~~~ia~~~g---~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~-- 76 (226) T 1wdn_A 3 KKLVVATDTAFVPFEFKQ-GDLYVGFDVDLWAAIAKELK---LDYELKPMDFSGIIPALQTKNVDLALAGITITDERK-- 76 (226) T ss_dssp -CEEEEEESSBTTTBEEE-TTEEESHHHHHHHHHHHHHT---CCEEEEEECGGGHHHHHHTTSSSEEEEEEECCHHHH-- T ss_pred CEEEEEECCCCCCEEEEE-CCEEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHC-- T ss_conf 509999899978848811-99588879999999999969---966999789999999987699865744212354132-- Q ss_pred CCCCCCCCCCCCCEEEEEECC-CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEE Q ss_conf 278435322344023463021-1347536417862034313426999999998629985078747989999998739602 Q gi|254780170|r 114 LGLAFRPITYFDGQGFIMHKK-KGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCD 192 (342) Q Consensus 114 ~~v~Fs~~~~~dgq~~lVrk~-~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~D 192 (342) ..++|+.||+.++..++++++ ..+++++||+|++||+..|++.+. +++......+++.+++..+++.++.+|||| T Consensus 77 ~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dl~g~~v~~~~g~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~g~vD 152 (226) T 1wdn_A 77 KAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVD----YAKANIKTKDLRQFPNIDNAYMELGTNRAD 152 (226) T ss_dssp TTSEECSCCEEEEEEEEEETTCCSCSSSTTTTTCEEEEETTSHHHH----HHHHHCCCSEEEEESSHHHHHHHHHTTSCS T ss_pred CEEEECCCEEEEEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCC----HHHHHCCCCCEEEECCHHHHHHHHHCCCEE T ss_conf 5488245569977799999999999997995899999987866420----123430355236507789999887458468 Q ss_pred EEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99825047999998367800100256444237101000277757999988774433112 Q gi|254780170|r 193 AYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA 251 (342) Q Consensus 193 A~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A 251 (342) +++.|...+.......+. ..+.+.++.+..+|++++++++|++|.+.++..+..|..- T Consensus 153 ~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~n~~l~~l~~~ 210 (226) T 1wdn_A 153 AVLHDTPNILYFIKTAGN-GQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLREN 210 (226) T ss_dssp EEEEEHHHHHHHHHTTTT-TTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHT T ss_pred EEEECCHHHHHHHHHCCC-CCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 999161888888764156-7405515567776189999799999999999999999979 No 10 >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Probab=100.00 E-value=1.2e-32 Score=225.64 Aligned_cols=210 Identities=16% Similarity=0.207 Sum_probs=182.0 Q ss_pred HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC Q ss_conf 85794999871789883068898988015099999999996798220259981431002677439627998124325320 Q gi|254780170|r 31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR 110 (342) Q Consensus 31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342) .++++|+||++.++|||+|.|++|++.||++|+++++++.++ .+++|++++|...+.++.+|++|++ .++++|++| T Consensus 8 ~~~~~i~v~~~~~~pP~~~~~~~G~~~G~~~Dl~~~i~~~~g---~~~~~~~~~~~~~~~~l~~g~~D~~-~~~~~~~~r 83 (234) T 3h7m_A 8 DRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMG---MTVEFRLGAWSEMFSALKSGRVDVL-QGISWSEKR 83 (234) T ss_dssp CSSSCEEEEEETEETTTEEECTTSCEESHHHHHHHHHHHHHT---CCEEEEEECGGGHHHHHHTTSSSEE-EEEECCHHH T ss_pred HCCCCEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEE-ECCCCCHHH T ss_conf 569919999899989907999999888769999999999949---9669951799999999977997554-210244433 Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCC-CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC Q ss_conf 1102784353223440234630211-347536417862034313426999999998629985078747989999998739 Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKK-GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH 189 (342) Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~-~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G 189 (342) + ..+.|+.||+..++.+++++++ .+++++||+|++||+..|++... ++.++....+++.+++..+++++|.+| T Consensus 84 ~--~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dl~~~~i~v~~g~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~g 157 (234) T 3h7m_A 84 A--RQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHE----YLAERGYGKDLVLTPTPADALRLLAAG 157 (234) T ss_dssp H--TTEEEEEEEEEEEEEEEEESSSCCCSSGGGGTTSCEEEETTSHHHH----HHHTTTCGGGEEEESSHHHHHHHHHTT T ss_pred C--CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCCEEEEECCCHHHH----HHHHHCCCCCEEEEEHHHHHHHHHHCC T ss_conf 1--4346577644245499998403344786784698243437987999----999732577158841157689999769 Q ss_pred CEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 60299825047999998367800100256444237101000277757999988774433112 Q gi|254780170|r 190 RCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA 251 (342) Q Consensus 190 r~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A 251 (342) |||+++.|...+.....+.+ ..+..++...++.+|+++++++++++|.+.++..+..|..- T Consensus 158 ~~D~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~ 218 (234) T 3h7m_A 158 GCDYAVVAMVPGMYIIRENR-LTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKT 218 (234) T ss_dssp SSSEEEEEHHHHHHHHHHTT-CTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHH T ss_pred CCCEEEECHHHHHHHHHHCC-CCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 95699941788999998668-87541025677775289999589999999999999999969 No 11 >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Probab=100.00 E-value=3.8e-32 Score=222.52 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=186.4 Q ss_pred HHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHH Q ss_conf 9984012442168999857949998717898830688989880150999999999967982202599814-310026774 Q gi|254780170|r 15 LFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQ 93 (342) Q Consensus 15 ~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~ 93 (342) +.++.++-...-.+-|++.++|++|+..++|||+|.|++|+++||++|+++++++.++ .+++++++. |...+.+|+ T Consensus 13 ~~~~~p~~t~~e~~wl~~~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dll~~i~~~lg---~~~~~~~~~~~~~~~~~l~ 89 (267) T 3mpk_A 13 LDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTG---LDFEIIGVDTVEELIAKLR 89 (267) T ss_dssp ----CCCCCHHHHHHHHHCSEEEEEEETEETTTEECCTTCCCBSHHHHHHHHHHHHHC---CEEEEEEESSHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHH T ss_conf 4535778999999999829939999848989956998999887789999999999849---9579998289999999863 Q ss_pred CCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC-CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCC Q ss_conf 396279981243253201102784353223440234630211-3475364178620343134269999999986299850 Q gi|254780170|r 94 SKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK-GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYH 172 (342) Q Consensus 94 sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~-~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~ 172 (342) +|++|++ .++++|.+|+ ..+.|+.||+.....+++++++ .+.++++|+|++||+..|++....+ .......+ T Consensus 90 ~g~~Di~-~~~~~t~~r~--~~~~~s~p~~~~~~~~v~~~~~~~~~~~~~l~g~~i~~~~g~~~~~~l----~~~~~~~~ 162 (267) T 3mpk_A 90 SGEADMA-GALFVNSARE--SFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLL----QRRYPQAK 162 (267) T ss_dssp HTSCSEE-EEEECCGGGT--TTEEECSCSEEECEEEEEESSTTSCSSGGGCTTCEEEEETTCTHHHHH----HHHCTTSE T ss_pred CCCEEEE-ECCCCCHHHH--HCCCCCCCEECCCEEEEEECCCCCCCCHHHHCCCCEEEECCCHHHHHH----HHHCCCCE T ss_conf 6966599-6478998898--407767621304404542014434579889658730554154056999----97288741 Q ss_pred EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 7874798999999873960299825047999998367800100256444237101000277757999988774433 Q gi|254780170|r 173 PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAM 248 (342) Q Consensus 173 ~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~al 248 (342) ++.|++..+++++|.+|||||++.|...+.....+...++..++.+..++..+++++++++|++|.++++.++..| T Consensus 163 i~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~k~~~~L~~~in~~L~~l 238 (267) T 3mpk_A 163 VVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSI 238 (267) T ss_dssp EEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTS T ss_pred EEEECCHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHC T ss_conf 7998068987789887986768427999999998389997699504677752699999489999999999999970 No 12 >3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A* Probab=100.00 E-value=4.7e-32 Score=221.95 Aligned_cols=211 Identities=18% Similarity=0.149 Sum_probs=176.0 Q ss_pred HHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCC Q ss_conf 99985794999871789883068898988015099999999996798220259981431002677439627998124325 Q gi|254780170|r 28 GDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWT 107 (342) Q Consensus 28 d~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T 107 (342) .+|+++++|+||++.++|||+|.|++|+++||++|+++++|+.++ .+++|+.++|..++.+|++|++|++++++++| T Consensus 4 ~~~~~~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~d~i~~~~~~~ 80 (246) T 3g41_A 4 SKIDRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEKLG---KQLEVREFAFDALILNLKKHRIDAILAGMSIT 80 (246) T ss_dssp ---CCCCEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHHT---CEEEEEECCGGGHHHHHHTTSSSEECSCCBCC T ss_pred CHHCCCCCEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEEECCCC T ss_conf 202058959999899889934899999888729999999999969---96699988989999999759988796623158 Q ss_pred CCCHHCCCCCCCCCCCCCCEEEEEECCC--CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHH Q ss_conf 3201102784353223440234630211--34753641786203431342699999999862998507874798999999 Q gi|254780170|r 108 LLREISLGLAFRPITYFDGQGFIMHKKK--GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAA 185 (342) Q Consensus 108 ~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~--~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~a 185 (342) ++|+ ..++|++||+...+.++++++. .+++.++|+|++|||+.||+.+..+ .. ...++++.|++..+++.+ T Consensus 81 ~~r~--~~~~fs~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~Igv~~gs~~~~~l----~~-~~~~~~~~~~~~~~~~~~ 153 (246) T 3g41_A 81 PSRQ--KEIALLPYYGDEVQELMVVSKRSLETPVLPLTQYSSVAVQTGTYQEHYL----LS-QPGICVRSFDSTLEVIME 153 (246) T ss_dssp HHHH--TTSEEEEEECCCBCEEEEEEETTCCSCSCCGGGSSCEEEETTSHHHHHH----HT-STTCCEEEESCHHHHHHH T ss_pred HHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHH----HH-CCCCEEEEECHHHHHHHH T ss_conf 6660--3434342333334332112222344441001234058885153799999----83-887538983407878889 Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHH-HCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 8739602998250479999983678001-00256444237101000277757999988774433 Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSE-HVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAM 248 (342) Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~-~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~al 248 (342) |.+||+|+++.|...+.......++... ...++.....++++++++++|++|.+.++..+..| T Consensus 154 L~~GriD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~k~~~~L~~~in~~l~~~ 217 (246) T 3g41_A 154 VRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDL 217 (246) T ss_dssp HHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHH T ss_pred HHCCCCCHHHHCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH T ss_conf 8759843113069999999985456530232258754430389999698999999999999999 No 13 >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Probab=100.00 E-value=9.6e-32 Score=220.00 Aligned_cols=208 Identities=16% Similarity=0.150 Sum_probs=174.5 Q ss_pred CCEEEEEEECCCCCCEEEC-CCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH Q ss_conf 7949998717898830688-989880150999999999967982202599814310026774396279981243253201 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVK-ANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d-~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342) ++.|+||++.++|||+|.+ ++|++.||++|+.+++|+.++ .+++|++.+|..++..|++|++|++++++++|.+|+ T Consensus 2 s~~l~vg~~~~~pP~~~~~~~~g~~~G~~~dl~~~ia~~~g---~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~ 78 (237) T 3kzg_A 2 SLNLTIGTSKFNPPFEVWSGNNSSLYGFDIDLMQEICRRLH---ATCTFEAYIFDDLFPALKNREVDLVIASMIITDERK 78 (237) T ss_dssp CCEEEEEEESEETTTEECCCTTSCCBSHHHHHHHHHHHHTT---CEEEEEEECGGGHHHHHHTTSSSEECSSCBCCTTGG T ss_pred CCCEEEEECCCCCCCEEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHH T ss_conf 87589998999898368989999288739999999999969---975999779999999998699877721367997897 Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCE Q ss_conf 10278435322344023463021134753641786203431342699999999862998507874798999999873960 Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRC 191 (342) Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~ 191 (342) ..++|+.|||..+..++++++..++++++|+|++||++.|++.+..+ .......++..+++.++++++|.+||| T Consensus 79 --~~~~fs~py~~~~~~~~~~~~~~~~~~~~l~g~~i~~~~g~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~Grv 152 (237) T 3kzg_A 79 --KHFIFSLPYMESNSQYITTVDSKISTFDDLHGKKIGVRKGTPYARQV----LSENRNNQVIFYELIQDMLLGLSNNQV 152 (237) T ss_dssp --GTCEECCCSBCCEEEEEEETTCSCCSGGGGTTCEEEEETTSTHHHHH----HHTCSSCEEEEESSHHHHHHHHHTTSS T ss_pred --HCCCCCCCEEECCCEEEECCCCCCCCHHHHCCCCCEEECCCHHHHHH----HHHCCCCEEECCCCHHHHHHHHHCCCE T ss_conf --30204674340340123315555689889769821432586899999----873456401125888998889865965 Q ss_pred EEEEECCHHHHHHHHHCCCC-----HHHCCCCCCCC-CCCEEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 29982504799999836780-----01002564442-371010002777579999887744331 Q gi|254780170|r 192 DAYTGDISALYALKLTNDRP-----SEHVILPDIIS-KSPLAPAIIQGDTEWYNIVSWTHYAMV 249 (342) Q Consensus 192 DA~~~D~s~La~~~~~~~~p-----~~~~il~e~is-kEPlg~avr~gD~~w~d~V~W~~~ali 249 (342) |+++.|...+.....+.+.. ..+.+++..++ .+|+++++++++++|.+.++..+..|. T Consensus 153 D~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~in~~l~~l~ 216 (237) T 3kzg_A 153 DASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEME 216 (237) T ss_dssp SEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHHH T ss_pred EEEEECHHHHHHHHHHCCCCCEECCCCEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 7999659999999985896410215320113665556763699988999999999999999999 No 14 >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Probab=100.00 E-value=1.2e-31 Score=219.47 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=178.0 Q ss_pred CCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEE Q ss_conf 24421689998579499987178988306889898801509999999999679822025998143100267743962799 Q gi|254780170|r 21 STNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDIL 100 (342) Q Consensus 21 aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil 100 (342) .+.+++|++|+++|+||||+..++|||+|.|++|+++||++|+++++++.++ .+++|++++|..++.++.+|++|++ T Consensus 2 ~~~~~~l~~I~~~g~l~V~~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~~g---~~~~~~~~~~~~~~~~~~~g~~d~~ 78 (239) T 3kbr_A 2 NAQESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLG---AKLVVVPTSWPNLMRDFADDRFDIA 78 (239) T ss_dssp ---CCHHHHHHHHTEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHTT---CEEEEEECCTTTHHHHHHTTCCSEE T ss_pred CCCHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHCCCCCCC T ss_conf 8325159998639989999878989914899999887707999999988649---7137885366888999985996522 Q ss_pred EECCCCCCCCHHCCCCCCCCCCCCCCEEEEEEC--CCCCCCHHHHC--CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEE Q ss_conf 812432532011027843532234402346302--11347536417--86203431342699999999862998507874 Q gi|254780170|r 101 SRNTDWTLLREISLGLAFRPITYFDGQGFIMHK--KKGISSVSQLS--GASICVQAGTTTELTLADYFKAHNMKYHPIVF 176 (342) Q Consensus 101 ~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk--~~~i~s~~dL~--G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~ 176 (342) ++...+|++|. ..+.|+.|++++.+.+++.. +..+.+.++++ |++||+..|++.+..+ ..+....+++.| T Consensus 79 ~~~~~~t~~~~--~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~----~~~~~~~~i~~~ 152 (239) T 3kbr_A 79 MSGISINLERQ--RQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFA----RANLKKARILVH 152 (239) T ss_dssp CSSCBCCHHHH--TTCEECSCSEEECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHHHHHH----HHHCSSSEEEEC T ss_pred CCCCCCCHHHH--HHCCCCCCEEECCCEEEEEECCCCCCCCHHHHHCCCCEEEECCCCHHHHHH----HHCCCCCEEEEE T ss_conf 33366897774--322567434642521355202567656524443368705765675399999----870876345330 Q ss_pred CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCCCCCEEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 798999999873960299825047999998367800100256-4442371010002777579999887744331 Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIISKSPLAPAIIQGDTEWYNIVSWTHYAMV 249 (342) Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~iskEPlg~avr~gD~~w~d~V~W~~~ali 249 (342) ++..+++++|.+||||+++.|...+...... +|+...+.+ ..++.++++.++++ |++|.+.++..+..|. T Consensus 153 ~~~~~~l~~L~~grvD~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~in~~l~~l~ 223 (239) T 3kbr_A 153 PDNVTIFQQIVDGKADLMMTDAIEARLQSRL--HPELCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAE 223 (239) T ss_dssp CCTTTHHHHHHTTSCSEEEEEHHHHHHHHHH--CTTEEECCCC-CCCCEEECCEECS-CHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCEEEEECHHHHHHHHHH--CCCCEEEEECCCCCCCEEEEEECC-CHHHHHHHHHHHHHHH T ss_conf 2327676786369831999548999999997--899638962157775308999769-9999999999999999 No 15 >3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes} Probab=100.00 E-value=3.2e-31 Score=216.71 Aligned_cols=210 Identities=21% Similarity=0.281 Sum_probs=177.9 Q ss_pred HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC Q ss_conf 85794999871789883068898988015099999999996798220259981431002677439627998124325320 Q gi|254780170|r 31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR 110 (342) Q Consensus 31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342) +.||+||||+..++|||+|.|++|+++||++|+++++++.++ .+++|++++|..++..+.+|++|++++++++|++| T Consensus 2 ~~rg~lrvgv~~~~pP~~~~d~~g~~~G~~~Dl~~~i~~~lg---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r 78 (245) T 3k4u_A 2 SLRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMG---VKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQER 78 (245) T ss_dssp -CCSEEEEEECTTSTTTCEEETTTEEESHHHHHHHHHHHHHT---CEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHH T ss_pred CCCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHH T ss_conf 988789999828988936899999888729999999999949---96699733708889998669977898678568777 Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCC--CCCCHHHHCCCC--EEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH Q ss_conf 1102784353223440234630211--347536417862--034313426999999998629985078747989999998 Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKK--GISSVSQLSGAS--ICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAY 186 (342) Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~--~i~s~~dL~G~~--I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al 186 (342) + ..++|+.|+++++..+++++++ .+.+..++.+++ +++..|++.+. +.+......+++.+++..+++.+| T Consensus 79 ~--~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~l~~L 152 (245) T 3k4u_A 79 N--LRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEY----AAKRLFKNAKLKTYDTEAEAVQEV 152 (245) T ss_dssp H--TTSEECSCSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHH----HHHHHCSSSEEEEESSHHHHHHHH T ss_pred H--HHCCCCCCEECCCCCCHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHH----HHHHHCCCCEEEEEECCHHHHHHH T ss_conf 7--5334678612044110001465444678778514554213477723789----999737786289984217899999 Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 7396029982504799999836780010025644423710100027775799998877443311 Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT 250 (342) Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~ 250 (342) .+||||+++.|...+.......+ +....+++..++.+|+++++|++|++|.+.++..+..|.+ T Consensus 153 ~~GrvD~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~ 215 (245) T 3k4u_A 153 LNGKADMFIFDLPFNVAFMAQKG-QGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKH 215 (245) T ss_dssp HSSSSEEEEEEHHHHHHHHHHTT-TTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHH T ss_pred HCCCCCEEEECCHHHHHHHHHCC-CCCCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 77996599973277779998648-7664212214777618999969999999999999999996 No 16 >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis} Probab=100.00 E-value=1.7e-31 Score=218.40 Aligned_cols=208 Identities=16% Similarity=0.105 Sum_probs=173.0 Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC Q ss_conf 94999871789883068898988015099999999996798220259981431002677439627998124325320110 Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS 113 (342) Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~ 113 (342) ..|+||+++++|||+|.|++|+++||++|+++++|..++ .+++|++++|+.++.+|++|++|+++++++++.+|+. T Consensus 11 ~~l~Vg~~~~~pP~~~~~~~G~~~G~~vDi~~~ia~~lg---~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~~~~r~~- 86 (242) T 3del_B 11 EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLG---KTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLK- 86 (242) T ss_dssp CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHHT---CEEEEEECCGGGHHHHHHTTSSSEECSSBBCCHHHHT- T ss_pred CEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHH- T ss_conf 969999899889915899999888729999999999969---9769997898999999975986610035769988983- Q ss_pred CCCCCCCCCCCCCEEE-EEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEE Q ss_conf 2784353223440234-630211347536417862034313426999999998629985078747989999998739602 Q gi|254780170|r 114 LGLAFRPITYFDGQGF-IMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCD 192 (342) Q Consensus 114 ~~v~Fs~~~~~dgq~~-lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~D 192 (342) .+.|+++|+...+.+ +++++..++++++|+|++|||+.||..+..+++ ....+++.|++..+++.+|.+|||| T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Vgv~~gs~~~~~l~~-----~~~~~i~~~~~~~~~~~~L~~griD 160 (242) T 3del_B 87 -EILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQS-----LSEVHIRSFDSTLEVLMEVMHGKSP 160 (242) T ss_dssp -TEEEEEEEEEEESEEEEEEESCCSCCCCGGGSSCEEEETTSHHHHHHHH-----STTCCEEEESSHHHHHHHHHTTSSS T ss_pred -HCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCEEEECCCHHHHHHHH-----CCCCEEEEEECCCHHHHHHHCCCEE T ss_conf -1367864323553268863154332134420220024257435899985-----6587079861453125688639743 Q ss_pred EEEECCHHHHHHHHHCCCCHH-HCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998250479999983678001-00256444237101000277757999988774433112 Q gi|254780170|r 193 AYTGDISALYALKLTNDRPSE-HVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA 251 (342) Q Consensus 193 A~~~D~s~La~~~~~~~~p~~-~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A 251 (342) +++.|...+.......+.-.. ...+++.....+++++++++|+++.+.++..+..|.+- T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~k~~~~l~~~ln~al~~l~~~ 220 (242) T 3del_B 161 VAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKE 220 (242) T ss_dssp EEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHT T ss_pred EEEECHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 999669999999985887634542268765432689999489999999999999999978 No 17 >1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Probab=100.00 E-value=1.6e-33 Score=231.30 Aligned_cols=218 Identities=13% Similarity=0.104 Sum_probs=176.9 Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-----------------CC Q ss_conf 4216899985794999871789883068898988015099999999996798220259981-----------------43 Q gi|254780170|r 23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-----------------NA 85 (342) Q Consensus 23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-----------------~~ 85 (342) ...+++.++.++++++|+...+|||++.+++|+|+||||||+++||+.++ .+++|+++ +| T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~G~~vDl~~~ia~~lg---~~~e~~~~~~~~~g~~~~~~~~~~~~w 106 (292) T 1pb7_A 30 EEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMN---FTYEVHLVADGKFGTQERVNNSNKKEW 106 (292) T ss_dssp CCBCTTSCBCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHHT---CCEEEEECTTCCCCCEEECTTSSCEEE T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCCCCCCH T ss_conf 44434433457428951168888633127999769984999999999839---947999866765454333465566888 Q ss_pred CCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC--CC----CEEEEECCCHHHH Q ss_conf 10026774396279981243253201102784353223440234630211347536417--86----2034313426999 Q gi|254780170|r 86 KERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS--GA----SICVQAGTTTELT 159 (342) Q Consensus 86 ~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~--G~----~I~v~~GTT~e~~ 159 (342) ++++++|++|++|++++++++|++|+ ..++|+.||+++++.++||+++.+....+++ ++ .+++..+++.+.. T Consensus 107 ~~~~~~l~~g~~Di~~~~~~~t~eR~--~~~~Fs~Py~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 184 (292) T 1pb7_A 107 NGMMGELLSGQADMIVAPLTINNERA--QYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIY 184 (292) T ss_dssp CHHHHHHHHTSCSEECSSCBCCHHHH--TTEEECSCSEEEEEEEEEETTCCCCSTTCHHHHSCBTTBCEECBTTSHHHHH T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHH--HHCCCCCEECCCCEEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHH T ss_conf 89999986797679986687998999--4266651012477689998688656453033068633269978664799999 Q ss_pred HHHHHH--HCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHH Q ss_conf 999998--629985078747989999998739602998250479999983678001002564442371010002777579 Q gi|254780170|r 160 LADYFK--AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEW 237 (342) Q Consensus 160 l~~~~~--~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w 237 (342) ++.... ......+++.|++..+++.++.+|++||+..|...+...... + .+++++++.++.+|+++++++|+ .| T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~a~~k~~-~l 260 (292) T 1pb7_A 185 FRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ--K-CDLVTTGELFFRSGFGIGMRKDS-PW 260 (292) T ss_dssp HHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHH--C-TTEEECSSCSEEEEECCEEETTC-SS T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHH--C-CCEEEECCCCCCCEEEEEEECCH-HH T ss_conf 98646665306774699828899999998779735996258999999986--8-98799377666612899990875-99 Q ss_pred HHHHHHHHHHHH Q ss_conf 999887744331 Q gi|254780170|r 238 YNIVSWTHYAMV 249 (342) Q Consensus 238 ~d~V~W~~~ali 249 (342) .+.++..+..|. T Consensus 261 ~~~in~al~~l~ 272 (292) T 1pb7_A 261 KQNVSLSILKSH 272 (292) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 18 >1ii5_A Hypothetical protein SLR1257; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Probab=99.97 E-value=5.2e-30 Score=209.01 Aligned_cols=205 Identities=16% Similarity=0.138 Sum_probs=171.1 Q ss_pred CCEEEEEEECCCCCCEEECC--CCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCC Q ss_conf 79499987178988306889--898801509999999999679822025998-143100267743962799812432532 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKA--NGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLL 109 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~--~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~ 109 (342) .+.||||+.. .|||+|.++ +|+++||+||+++++|+.++ .+++|+. .+|+..+.+|++|++|++++++++|++ T Consensus 3 a~~LrVg~~~-~pPf~~~~~~~~g~~~G~~vdl~~~ia~~~g---~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~e 78 (233) T 1ii5_A 3 AMALKVGVVG-NPPFVFYGEGKNAAFTGISLDVWRAVAESQK---WNSEYVRQNSISAGITAVAEGELDILIGPISVTPE 78 (233) T ss_dssp SCCEEEEECC-CTTTCEEC-----CEESHHHHHHHHHHHHHT---CCEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHH T ss_pred CCCEEEEEEC-CCCCEEEECCCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHH T ss_conf 7877999947-9997665349999288789999999999839---97499956999999999986998767411568867 Q ss_pred CHHCCCCCCCCCCCCCCEEEEEECCCC--CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH Q ss_conf 011027843532234402346302113--475364178620343134269999999986299850787479899999987 Q gi|254780170|r 110 REISLGLAFRPITYFDGQGFIMHKKKG--ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYR 187 (342) Q Consensus 110 Rd~~~~v~Fs~~~~~dgq~~lVrk~~~--i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~ 187 (342) |+....+.|+.|||+.++.++++++.. +.+++||+|++||+..|++.+..+ +. ...+++.|++.++++.+|. T Consensus 79 R~~~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dl~g~~i~~~~g~~~~~~~----~~--~~~~i~~~~~~~~~~~~l~ 152 (233) T 1ii5_A 79 RAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWA----NF--YQADVRETNNLTAAITLLQ 152 (233) T ss_dssp HHTSTTEEECCCCEEEEEEEEEEGGGTTTCSSGGGGTTCEEEEETTSHHHHHH----HH--TTCEEEEESSHHHHHHHHH T ss_pred HHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHH----HC--CCCCCCCCCCHHHHHHHHH T ss_conf 76443023467742257336885112224566888754230556886899998----55--3664213574799999986 Q ss_pred CCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 39602998250479999983678001002564442371010002777579999887744331 Q gi|254780170|r 188 AHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV 249 (342) Q Consensus 188 ~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali 249 (342) +||||+++.|...+.......+. ..+.+.+..++.+|++++++++ ++|.+.++-.+..|. T Consensus 153 ~grvD~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~~in~~l~~~~ 212 (233) T 1ii5_A 153 KKQVEAVMFDRPALIYYTRQNPN-LNLEVTEIRVSLEPYGFVLKEN-SPLQKTINVEMLNLL 212 (233) T ss_dssp TTSCSEEEEEHHHHHHHHHHCGG-GCEEECSCCSEEEEEEEEEETT-CTTHHHHHHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHHCCC-CCEEECCCCCCCCEEEEEECCC-HHHHHHHHHHHHHHH T ss_conf 59179997869999999996899-9764245678773499997899-799999999999999 No 19 >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Probab=99.97 E-value=1.1e-29 Score=206.90 Aligned_cols=210 Identities=19% Similarity=0.215 Sum_probs=175.0 Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC Q ss_conf 94999871789883068898988015099999999996798220259981431002677439627998124325320110 Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS 113 (342) Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~ 113 (342) .+||||+..++|||+|.|++|+++||++|+++++|+.++ .+++|++.+|..++.++.+|++|+++++.++|.+|.. T Consensus 4 ~tirv~~~~~~pP~~~~d~~g~~~G~~~Dl~~~ia~~lg---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~eR~~- 79 (239) T 1lst_A 4 QTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQ---VKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQ- 79 (239) T ss_dssp SEEEEEECSCBTTTBEECTTCCEESHHHHHHHHHHHHHT---CEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHH- T ss_pred CEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHH- T ss_conf 869999899978925899999888709999999999959---9689998030767899866876789967879978985- Q ss_pred CCCCCCCCCCCCCEEEEEECCCC-CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEE Q ss_conf 27843532234402346302113-47536417862034313426999999998629985078747989999998739602 Q gi|254780170|r 114 LGLAFRPITYFDGQGFIMHKKKG-ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCD 192 (342) Q Consensus 114 ~~v~Fs~~~~~dgq~~lVrk~~~-i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~D 192 (342) .+.|+.||++....+++++++. +++++||+|++||+..|++.+..+...+... .++++.+++..+++.++.+|++| T Consensus 80 -~~~~s~p~~~~~~~~~~~~~~~~~~~~~dL~~~~i~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~vD 156 (239) T 1lst_A 80 -EIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTK--GVDVVAYANQDLIYSDLTAGRLD 156 (239) T ss_dssp -HCEECSCSBCCCEEEEEETTCCCCSSHHHHTTCEEEEETTSHHHHHHHHHTGGG--TCEEEEESSHHHHHHHHHTTSCS T ss_pred -HCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHCCC--EEEEEEECCHHHHHHHHHCCCEE T ss_conf -201357457414311001588767997896899899985752776666541331--02356308989999999849713 Q ss_pred EEEECCHHHHHHHHHCCCCHHHCCC-----CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 9982504799999836780010025-----644423710100027775799998877443311 Q gi|254780170|r 193 AYTGDISALYALKLTNDRPSEHVIL-----PDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT 250 (342) Q Consensus 193 A~~~D~s~La~~~~~~~~p~~~~il-----~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~ 250 (342) +++.+...+.......+........ ++.+...+++++++++|++|...++..+..|.. T Consensus 157 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~~~~ 219 (239) T 1lst_A 157 AALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQ 219 (239) T ss_dssp EEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHH T ss_pred EEEECHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 999438999999996756665234166444542356407999908999999999999999997 No 20 >3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Probab=99.96 E-value=2.2e-28 Score=198.75 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=162.8 Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC Q ss_conf 94999871789883068898988015099999999996798220259981431002677439627998124325320110 Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS 113 (342) Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~ 113 (342) .+||||+..++|||+|.|++|++.||++|+++++|+.++ .+++|++.+|..++..|.+|++|++++++++|.+|+ T Consensus 5 ~tlrVg~~~~~pP~~~~d~~g~~~G~~vDl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~D~i~~~~~~t~er~-- 79 (232) T 3i6v_A 5 DTVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAG---LTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERD-- 79 (232) T ss_dssp -CEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHHT---CCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHH-- T ss_pred CEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHH-- T ss_conf 959999879979936999999787759999999999849---967999767488999986799779997786897898-- Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE Q ss_conf 27843532234402346302113475364178620343134269999999986299850787479899999987396029 Q gi|254780170|r 114 LGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA 193 (342) Q Consensus 114 ~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA 193 (342) ..+.|+.||+..++.+++++++. .||+|. +++..++.....+ .. ...+++.|++..+++.+|.+||||+ T Consensus 80 ~~~~~s~p~~~~~~~~~~~~~~~----~dl~~~-~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~L~~grvD~ 148 (232) T 3i6v_A 80 EVIDFTQNYIPPTASSYVATSDG----ADLSGI-VAAQTATIQAGYI----AE--SGATLVEFATPEETIAAVRNGEADA 148 (232) T ss_dssp TTSEEEEEEECCCEEEEEESSTT----CCTTSE-EEEETTSHHHHHH----HH--SSSEEEEESSHHHHHHHHHTTSSSE T ss_pred HCCCEECCEECCCCEEEEECCCH----HHHCCC-CCEEECCHHHHHH----HC--CCCEEEEECCHHHHHHHHHCCCCEE T ss_conf 31414032102661589983886----880786-0204253177776----35--6845899699899999997699509 Q ss_pred EEECCHHHHHHHHHCCCCHHHC-CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 9825047999998367800100-2564442371010002777579999887744331 Q gi|254780170|r 194 YTGDISALYALKLTNDRPSEHV-ILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV 249 (342) Q Consensus 194 ~~~D~s~La~~~~~~~~p~~~~-il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali 249 (342) ++.|...+.......+ .... +.+.....+|++++++++|+++.+.++..+..|. T Consensus 149 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~ 203 (232) T 3i6v_A 149 VFADRDYLVPIVAESG--GELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMK 203 (232) T ss_dssp EEEEHHHHHHHHHHTT--TSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHH T ss_pred EEECHHHHHHHHHHCC--CCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 9972899999998669--971993267776641799980899999999999999999 No 21 >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102} Probab=99.96 E-value=4.8e-28 Score=196.58 Aligned_cols=202 Identities=16% Similarity=0.252 Sum_probs=167.8 Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 94999871789883068898988015099999999996798220259981-43100267743962799812432532011 Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) -.|++|+. .+|||+| +++|+++||++|+++++|+.++ .+++|++. +|..++.+|++|++|++++++++|++|+. T Consensus 3 ~~l~v~~~-~~PPf~~-~~~g~~~G~~~di~~~i~~~lg---~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~ 77 (228) T 2pyy_A 3 QPLLVATR-VIPPFVL-SNKGELSGFSIDLWRSIATQIG---IESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQ 77 (228) T ss_dssp -CEEEEEC-CBTTTBB-CC---CBSHHHHHHHHHHHHHT---CCEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHHHH T ss_pred CCEEEEEC-CCCCEEE-CCCCEEEEEHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHHHHH T ss_conf 64899967-7198187-4499688859999999999969---97399967999999999985997667102557988985 Q ss_pred CCCCCCCCCCCCCCEEEEEECC----CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC Q ss_conf 0278435322344023463021----134753641786203431342699999999862998507874798999999873 Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKK----KGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRA 188 (342) Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~----~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~ 188 (342) . ++|+.|+|.++..++++++ ..+.++++|+|++|++..|++.+..++ .. ..+++.+++..+++.+|.+ T Consensus 78 ~--~~~s~p~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~l~----~~--~~~~~~~~~~~~~~~~l~~ 149 (228) T 2pyy_A 78 N--FDFSLPIFASGLQIMVRNLESGTGDIRSIDDLPGKVVATTAGSTAATYLR----EH--HISVLEVPKIEEAYKALQT 149 (228) T ss_dssp H--SEECSCSEEEEEEEEEEC-----CCCCSGGGCTTCEEEEETTSHHHHHHH----HT--TCEEEEESSHHHHHHHHHT T ss_pred H--CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCEEEECCCCHHHHHHH----HH--HCCCHHHHHHHHHHHHHHC T ss_conf 3--44678721256136763144565345887882998898438968999998----75--2021113248888878645 Q ss_pred CCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 96029982504799999836780010025644423710100027775799998877443311 Q gi|254780170|r 189 HRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT 250 (342) Q Consensus 189 Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~ 250 (342) ||||+++.|...+......... ....++...+..+|++++.++ |+++.+.++..+..|.. T Consensus 150 gr~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ln~~l~~l~~ 209 (228) T 2pyy_A 150 KKADAVVFDAPVLLFYAANEGK-GKVEIVGSILREESYGIILPN-NSPYRKPINQALLNLKE 209 (228) T ss_dssp TSSSEEEEEHHHHHHHHHTTTT-TTEEEEEEEEEEEEECCEECT-TCTTHHHHHHHHHHHHH T ss_pred CCEEEEEECHHHHHHHHHHCCC-CCEEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH T ss_conf 9467999631888999984688-835883466766328999779-98999999999999997 No 22 >2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* Probab=99.95 E-value=2.3e-28 Score=198.61 Aligned_cols=201 Identities=12% Similarity=0.107 Sum_probs=156.5 Q ss_pred CEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-----------CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCC Q ss_conf 3068898988015099999999996798220259981-----------43100267743962799812432532011027 Q gi|254780170|r 47 FAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-----------NAKERFLALQSKQIDILSRNTDWTLLREISLG 115 (342) Q Consensus 47 fs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-----------~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~ 115 (342) ....+.++.++||+|||+++||+.++- ++||+.+ +|++.+.+|.+|++|++++++|+|++|+ .. T Consensus 48 ~~~~~~~~~~~G~~iDl~~~ia~~lg~---~~e~~~v~d~~~g~~~~~~w~~li~~l~~g~~Di~i~~~tit~eR~--~~ 122 (284) T 2a5s_A 48 NEGMNVKKCCKGFCIDILKKLSRTVKF---TYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERS--EV 122 (284) T ss_dssp SCEEEEEEEEESHHHHHHHHHHHHHTC---CEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHH--TT T ss_pred CCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHH--HH T ss_conf 677678876389729999999998499---7799993587657657888899997663885899995880799999--54 Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCHHHHC---------CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH Q ss_conf 84353223440234630211347536417---------862034313426999999998629985078747989999998 Q gi|254780170|r 116 LAFRPITYFDGQGFIMHKKKGISSVSQLS---------GASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAY 186 (342) Q Consensus 116 v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~---------G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al 186 (342) ++|+.|||..++.++|++++.+....+++ +.++++..|++++.++.+.+...........+++.++++++| T Consensus 123 vdFs~Py~~~~~~ilv~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 202 (284) T 2a5s_A 123 VDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSL 202 (284) T ss_dssp EEECCCCEEECEEEEEETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHH T ss_pred CCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHH T ss_conf 82777624676778986798666635653267033156618999837549999997655431267982489999999999 Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 7396029982504799999836780010025--6444237101000277757999988774433112123 Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEEL 254 (342) Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~ 254 (342) .+|++||++.|.+.+.....+.+. .+..++ +..++.+++|+++++|++ |.+.++..+..|.+-.++ T Consensus 203 ~~G~vDa~i~d~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~gia~~k~s~-l~~~in~ai~~l~~~G~~ 270 (284) T 2a5s_A 203 KTGKLDAFIYDAAVLNYKAGRDEG-CKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEM 270 (284) T ss_dssp HTTSCSEEEEEHHHHHHHHHTCTT-SCEEEEECCCGGGCEEECCEEETTCT-THHHHHHHHHHHHHHTHH T ss_pred HCCCCCEEECCHHHHHHHHHHCCC-CCEEEECCCCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCHH T ss_conf 869987896459999999985899-85899358876576069999818839-999999999999969899 No 23 >1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Probab=99.94 E-value=8.5e-27 Score=188.66 Aligned_cols=214 Identities=13% Similarity=0.063 Sum_probs=160.0 Q ss_pred HHHCCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEE-------------CCCCCCH Q ss_conf 985794999871789883068898-------98801509999999999679822025998-------------1431002 Q gi|254780170|r 30 IKKRGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLP-------------LNAKERF 89 (342) Q Consensus 30 Vk~rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~-------------~~~~~rf 89 (342) ..++++|+||+ ...|||.+.+++ ++++||||||+++||+.++- +++|+. .+|..++ T Consensus 9 ~~~~~t~~v~t-~~~pP~~~~~~~~~~~~~n~~~~Gf~vDl~~~ia~~lg~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312) T 1yae_A 9 SLSNRSLIVTT-ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGF---TYEIRLVEDGKYGAQDDVNGQWNGMV 84 (312) T ss_dssp TTCSCEEEEEE-CCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCC---EEEEEECSSCCCCCBCTTTCCBCSHH T ss_pred CCCCCEEEEEE-CCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCCCCHHHHH T ss_conf 23688899998-245996788169987678986688789999999998299---77999905775453233678889987 Q ss_pred HHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-------------------------CCCHHHHC Q ss_conf 67743962799812432532011027843532234402346302113-------------------------47536417 Q gi|254780170|r 90 LALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-------------------------ISSVSQLS 144 (342) Q Consensus 90 ~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-------------------------i~s~~dL~ 144 (342) ++|++|++|++++++|+|++|.. .++|+.|||..+++++||++++ |++++||. T Consensus 85 ~~l~~g~~Di~i~~~sit~eR~~--~v~FS~PY~~~~~~lvv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~s~~dl~ 162 (312) T 1yae_A 85 RELIDHKADLAVAPLAITYVREK--VIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESPIDSADDLA 162 (312) T ss_dssp HHHHTTSCSEECSSCBCCHHHHH--HEEEEEEEEEECEEEEEEC----------------------------CCSHHHHH T ss_pred HHHCCCEEEEEEECCEECHHHHH--CCCCCCCEEEECEEEEEECCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCHHHHC T ss_conf 43224406599864585177741--0564777463047999998987775406662773566687320356658979958 Q ss_pred CCC---EEEEECCCHHHHHHHHH----H---HCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH Q ss_conf 862---03431342699999999----8---6299850787479899999987396029982504799999836780010 Q gi|254780170|r 145 GAS---ICVQAGTTTELTLADYF----K---AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH 214 (342) Q Consensus 145 G~~---I~v~~GTT~e~~l~~~~----~---~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~ 214 (342) ++. +++..|+++...+.+.. . ..........+....+...++..++.||++.|.+.+..... ++... T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~d~~~~~~~~~---~~~~~ 239 (312) T 1yae_A 163 KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQ---RNCNL 239 (312) T ss_dssp TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSSEEEEEEHHHHHHHHT---TCTTE T ss_pred CCEEEEEEEEECEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHHH---CCCCE T ss_conf 983699978812009998765101468899987630443121145688999971898599913899999984---49966 Q ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 025644423710100027775799998877443311212 Q gi|254780170|r 215 VILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEE 253 (342) Q Consensus 215 ~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee 253 (342) .++++.+..+++|+++|||+ .|++.++-.+..|.+-.+ T Consensus 240 ~~~~~~~~~~~~~~a~~K~s-~L~~~in~aL~~l~~~G~ 277 (312) T 1yae_A 240 TQIGGLIDSKGYGVGTPMGS-PYRDKITIAILQLQEEGK 277 (312) T ss_dssp EEESSCSSCEEEEEEEETTC-SSHHHHHHHHHHHHHHTH T ss_pred EEECCCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHCCH T ss_conf 98044467732899992880-999999999999997898 No 24 >1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Probab=99.93 E-value=8.5e-26 Score=182.35 Aligned_cols=208 Identities=15% Similarity=0.102 Sum_probs=152.2 Q ss_pred CCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-------------CCCCHHHH Q ss_conf 794999871789883068898-------9880150999999999967982202599814-------------31002677 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-------------AKERFLAL 92 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-------------~~~rf~aL 92 (342) .++|+|++-. .|||.|.+.+ |+++|||||++++||+.++- +++|+++. |+.++++| T Consensus 3 ~~t~~v~t~~-~pPf~~~~~~~~~~~~n~~~~G~~vDl~~~ia~~lg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (263) T 1mqi_A 3 NKTVVVTTIL-ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGF---KYKLTIVGDGKYGARDADTKIWNGMVGEL 78 (263) T ss_dssp CCCEEEEECC-BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECTTCCCCCBCTTTCCBCHHHHHH T ss_pred CEEEEEEECC-CCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEECCCCCCCEECCCCCCHHHHHHHH T ss_conf 7399999786-5996667368665478897688689999999998599---77999877876321313567778999865 Q ss_pred HCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC-- Q ss_conf 439627998124325320110278435322344023463021134753641786203431342699999999862998-- Q gi|254780170|r 93 QSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMK-- 170 (342) Q Consensus 93 ~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~-- 170 (342) .+|++|++++++|+|++|+. .++||.|||.+++.+++++++.+.+..||++++.+.. |++......+++...+.. T Consensus 79 ~~g~~D~~~~~~t~t~eR~~--~~~FS~py~~~~~~~~~~~~~~~~~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 155 (263) T 1mqi_A 79 VYGKADIAIAPLTITLVREE--VIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAY-GTLDSGSTKEFFRRSKIAVF 155 (263) T ss_dssp HTTSCSEECSSCBCCHHHHT--TEEECSCSEEECEEEEEETTCSCCSHHHHHTCSSSEE-ECBSSSHHHHHHHHCCSHHH T ss_pred HHCCCCEEEECCEECHHHHH--HCCCCCCEECCCEEEEEECCCCCCCHHHHHCCCCEEE-EEECHHHHHHHHHHCCCCHH T ss_conf 40232889875460676752--0454576452652898631553234777606723699-88617799999986322046 Q ss_pred ----------CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHH Q ss_conf ----------5078747989999998739602998250479999983678001002564442371010002777579999 Q gi|254780170|r 171 ----------YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNI 240 (342) Q Consensus 171 ----------~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~ 240 (342) ...+...+..+.+..+.+++.++.+.+.+....... ..+|.+...+++.++.+|+|+++|++++ |++. T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ia~~k~~~-L~~~ 233 (263) T 1mqi_A 156 DKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIE-QRKPCDTMKVGGNLDSKGYGIATPKGSS-LGNA 233 (263) T ss_dssp HHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTSEEEEEEHHHHHHHT-TSTTCCEEEESCCSCCEEECCEEETTCT-THHH T ss_pred HHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCEEEECCHHHHHHHH-HCCCCCEEEECCCCCCCEEEEEEECCHH-HHHH T ss_conf 6789987515772574260899999985387546633489999999-7299876982456776138999908809-9999 Q ss_pred HHHHHHHHH Q ss_conf 887744331 Q gi|254780170|r 241 VSWTHYAMV 249 (342) Q Consensus 241 V~W~~~ali 249 (342) ++=.+..|. T Consensus 234 in~aL~~l~ 242 (263) T 1mqi_A 234 VNLAVLKLN 242 (263) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999999 No 25 >2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Probab=99.93 E-value=9.3e-27 Score=188.44 Aligned_cols=189 Identities=10% Similarity=0.028 Sum_probs=141.6 Q ss_pred CCEEEEHHHHHHHHHHHHCCCCCEEEEE-----------ECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC Q ss_conf 9880150999999999967982202599-----------81431002677439627998124325320110278435322 Q gi|254780170|r 54 GDWKGFDVDFCRALSSAIFDDPSKIQYL-----------PLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT 122 (342) Q Consensus 54 G~~~GfDVDl~raiAaal~gd~~kVe~v-----------~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~ 122 (342) +.+.||||||+++||+.++ .+++|+ +.+|+.++++|++|++|++++++|+|.+|+ ..++|+.|| T Consensus 66 ~~~~Gf~iDL~~~ia~~lg---~~~e~~~v~d~~~~~~~~~~w~~~i~~l~~g~~Di~i~~~t~t~eR~--~~v~Fs~Py 140 (294) T 2rc8_A 66 KCCYGYCIDLLEQLAEDMN---FDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARS--QVIDFTSPF 140 (294) T ss_dssp EEEESHHHHHHHHHHHHHT---EEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHH--TTSEECSCS T ss_pred CCCEEEHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHH--HHCEECCCE T ss_conf 7738568999999999819---96799980688634536788899999997799659953013687688--531741204 Q ss_pred CCCCEEEEEECC-CCCCCHHH--HCCCC----EEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC--CEEE Q ss_conf 344023463021-13475364--17862----034313426999999998629985078747989999998739--6029 Q gi|254780170|r 123 YFDGQGFIMHKK-KGISSVSQ--LSGAS----ICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH--RCDA 193 (342) Q Consensus 123 ~~dgq~~lVrk~-~~i~s~~d--L~G~~----I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G--r~DA 193 (342) +..++.++++++ ..+.+..| |.|++ +|+..|++.+..+.+.+.......+...+++.+++++++..| |+|| T Consensus 141 ~~~~~~i~~~~~~~~~~~~~d~~l~~~~~g~~~Gtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~g~vDa 220 (294) T 2rc8_A 141 FSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDA 220 (294) T ss_dssp EEEEEEEEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSE T ss_pred ECCCCEEEEECCCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCEEEE T ss_conf 12660478745887544322124047733238996664289999886404333103553038779999876427815899 Q ss_pred EEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 98250479999983678001002564442371010002777579999887744331 Q gi|254780170|r 194 YTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV 249 (342) Q Consensus 194 ~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali 249 (342) ++.|.+.+.....+.++ .+..++++.++.+++|+++++|+ .|++.++=.+..|. T Consensus 221 ~i~d~~~~~~~~~~~~~-~~l~~v~~~~~~~~~gia~~k~s-~l~~~in~~l~~l~ 274 (294) T 2rc8_A 221 FIMDKALLDYEVSIDAD-CKLLTVGKPFAIEGYGIGLPPNS-PLTSNISELISQYK 274 (294) T ss_dssp EEEEHHHHHHHHHTCSS-SCEEECSCCEEEEEECCEECTTC-THHHHHHHHHHHHH T ss_pred EEECHHHHHHHHHHCCC-CCEEEECCCCCCCEEEEEECCCH-HHHHHHHHHHHHHH T ss_conf 98236889999986899-86899068777621899980984-99999999999999 No 26 >2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Probab=99.93 E-value=8e-25 Score=176.17 Aligned_cols=207 Identities=15% Similarity=0.094 Sum_probs=156.2 Q ss_pred CEEEEEEECCCCCCEEECCC-----CCEEEEHHHHHHHHHHHHCCCCCEEEEEECC------------CCCCHHHHHCCC Q ss_conf 94999871789883068898-----9880150999999999967982202599814------------310026774396 Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKAN-----GDWKGFDVDFCRALSSAIFDDPSKIQYLPLN------------AKERFLALQSKQ 96 (342) Q Consensus 34 G~L~vGv~~~~ppfs~~d~~-----G~~~GfDVDl~raiAaal~gd~~kVe~v~~~------------~~~rf~aL~sG~ 96 (342) .+||||+.. .|||.|.+++ |+++||||||+++||+.++ .+++|+.+. |...+..+.+|+ T Consensus 3 ~~lrV~~~~-~pP~~~~~~~~~g~~~~~~G~~vdl~~~ia~~lg---~~~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 78 (265) T 2v3u_A 3 VVLRVVTVL-EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLG---FNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKR 78 (265) T ss_dssp CEEEEEECC-BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHT---CEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS T ss_pred CEEEEEECC-CCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCC T ss_conf 689999855-5997798067789999788809999999999839---967999846753143126888899877760685 Q ss_pred EEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHH---------- Q ss_conf 2799812432532011027843532234402346302113475364178620343134269999999986---------- Q gi|254780170|r 97 IDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKA---------- 166 (342) Q Consensus 97 vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~---------- 166 (342) +|++++++|+|++| ...++|+.|||.+++++++++........++.++. +...|++......+.+.. T Consensus 79 ~D~~~~~~~~t~~R--~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (265) T 2v3u_A 79 ADIGISALTITPDR--ENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQT-DIPYGTVLDSAVYQHVRMKGLNPFERDS 155 (265) T ss_dssp CSEECSSCBCCHHH--HTTEEECSCSEEECEEEEEETTCCCCSHHHHHTCS-SSCEECBTTSHHHHHHHHHHTCTTCSCT T ss_pred EEEEECCCCCCHHH--HHHEEECCCEEECCEEEEECCCCCCCCHHHHCCCE-EEEEEEEECHHHHHHHHHCCCCCCCCCH T ss_conf 43660446546777--52152046436513344420235532256746862-5664013001799999863875211202 Q ss_pred ---------CCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHH Q ss_conf ---------29985078747989999998739602998250479999983678001002564442371010002777579 Q gi|254780170|r 167 ---------HNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEW 237 (342) Q Consensus 167 ---------~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w 237 (342) .....+++.+.+..+++.++..|+ |+++.|...+...... ..+.++.++++.++.+|++++++|++ +| T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~K~s-~l 232 (265) T 2v3u_A 156 MYSQMWRMINRSNGSENNVLESQAGIQKVKYGN-YAFVWDAAVLEYVAIN-DPDCSFYTVGNTVADRGYGIALQHGS-PY 232 (265) T ss_dssp HHHHHHHHHCC-----CCBSSHHHHHHHHHHSS-CEEEEEHHHHHHHHHH-CTTCCEEEEC---CCEEECCEEETTC-TT T ss_pred HHHHHHHHHHCCCCCCEECCCHHHHHHHHHCCC-EEEEECHHHHHHHHHH-CCCCCEEECCCCCCCCEEEEEEECCH-HH T ss_conf 578999987315540011168999999997699-0999537999999985-78975898157777733899996981-99 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9998877443311 Q gi|254780170|r 238 YNIVSWTHYAMVT 250 (342) Q Consensus 238 ~d~V~W~~~ali~ 250 (342) ++.++..+..|.. T Consensus 233 ~~~~n~~l~~~~~ 245 (265) T 2v3u_A 233 RDVFSQRILELQQ 245 (265) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999997 No 27 >3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2i0c_A* 3c31_A* 1txf_A* 3c32_A* 3c33_A* 3c34_A* 3c35_A* 3c36_A* 2wky_A* ... Probab=99.88 E-value=9.5e-22 Score=156.68 Aligned_cols=206 Identities=11% Similarity=0.067 Sum_probs=147.0 Q ss_pred CCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-------------CCCCCHHHH Q ss_conf 794999871789883068898-------988015099999999996798220259981-------------431002677 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPL-------------NAKERFLAL 92 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~-------------~~~~rf~aL 92 (342) ..+|+|++.. +|||.+.+++ |+++|||||++++||+.++- +++|+.+ +|+.+++.| T Consensus 3 ~ktl~v~t~~-~~P~~~~~~~~~~~~~n~~~~G~dvDl~~~ia~~lg~---~~~~~~v~~~~~~~~~~~~~~w~~~~~~l 78 (259) T 3g3k_A 3 NRSLIVTTIL-EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGF---TYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259) T ss_dssp CCCEEEEECC-BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECTTCCCCCBCTTTCCBCHHHHHH T ss_pred CEEEEEEECC-CCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEECCCCCCCCCCCCCCCHHHHHHHH T ss_conf 8699999786-4898746468887678995688589999999998099---75899735555453343567889998764 Q ss_pred HCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC---CCCEEEEECCCHHHHHHHH------ Q ss_conf 4396279981243253201102784353223440234630211347536417---8620343134269999999------ Q gi|254780170|r 93 QSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS---GASICVQAGTTTELTLADY------ 163 (342) Q Consensus 93 ~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~---G~~I~v~~GTT~e~~l~~~------ 163 (342) ++|++|++++++++|.+| ...++|+.||+.+++.+++++++++....++. +.++++..+.......... T Consensus 79 ~~g~~D~~~~~~~~t~eR--~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (259) T 3g3k_A 79 IDHKADLAVAPLAITYVR--EEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYD 156 (259) T ss_dssp HTTSCSEECSSCBCCHHH--HTTEEECSCSEEECEEEEEESSSSCCSHHHHHTCSSSEEEEETTSHHHHHHHHCCSHHHH T ss_pred HCCCCCEEEECCCCCHHH--HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHH T ss_conf 102357786358679999--953546687122560455216886553345404542245677242278888872015778 Q ss_pred --HHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHH Q ss_conf --986299850787479899999987396029982504799999836780010025644423710100027775799998 Q gi|254780170|r 164 --FKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIV 241 (342) Q Consensus 164 --~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V 241 (342) ............+.+..........+. ++++.|.+.+...... ..+..++...+..+++++++++++ .|++.+ T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ia~~k~s-~L~~~i 231 (259) T 3g3k_A 157 KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQR---NCNLTQIGGLIDSKGYGVGTPMGS-PYRDKI 231 (259) T ss_dssp HHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHH---CTTEEEESSCSSCEEECCEEETTC-THHHHH T ss_pred HHHHHHCCHHHHHHHCCHHHHHHHHHCCC-EEEEECHHHHHHHHHC---CCCEEECCCCCCCCEEEEEEECCH-HHHHHH T ss_conf 99875200024565300788887750576-5998236889998741---650342265667721899992984-999999 Q ss_pred HHHHHHHH Q ss_conf 87744331 Q gi|254780170|r 242 SWTHYAMV 249 (342) Q Consensus 242 ~W~~~ali 249 (342) +=.+..|. T Consensus 232 n~al~~m~ 239 (259) T 3g3k_A 232 TLAILKLQ 239 (259) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 28 >2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Probab=99.56 E-value=1.3e-14 Score=111.53 Aligned_cols=212 Identities=10% Similarity=0.019 Sum_probs=137.1 Q ss_pred HHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHCCCEEEEEECC Q ss_conf 68999857949998717898830688989880150999999999967982202599814-31002677439627998124 Q gi|254780170|r 26 ILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQSKQIDILSRNT 104 (342) Q Consensus 26 tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~sG~vDil~~~~ 104 (342) .|-....++.+.|.. |+.| ...+.|+.-.+-+ +. +..+||++... +.+++++|.+|++|+.+.++ T Consensus 8 ~l~~~~~~~~~v~a~-----Pl~~---s~~y~g~a~gl~~----~~--~gl~ve~~~~~g~~~~i~al~sg~~D~a~~~~ 73 (231) T 2ozz_A 8 ALLSHVDINNVVCAM-----PLPY---TRLYEGLASGLKA----QF--DGIPFYYAHMRGADIRVECLLNGVYDMAVVSR 73 (231) T ss_dssp HHHTTSSCSSEEEEE-----CCCC---SHHHHHHHHHHHH----TT--TTSCEEEEECSCHHHHHHHHHTTSCSEEEEEH T ss_pred HHHHHCCCCCEEEEE-----CCCH---HHHHHHHHHHHHH----HH--CCCCEEEEEECCHHHHHHHHHCCCCCEEEECC T ss_conf 999743637737993-----4431---8888888766999----85--39828999944839999999869947797271 Q ss_pred CCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHH Q ss_conf 32532011027843532234402346302113475364178620343134269999999986299850787479899999 Q gi|254780170|r 105 DWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDA 184 (342) Q Consensus 105 T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~ 184 (342) +.+..+.. .+.+ ...+......++++++++|++++||+||+|++..||+.+..|.+..- ..-+++.+.+ +..++.. T Consensus 74 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~dLkGk~Vgv~~~s~~~~~L~~~g~-~~~~v~~v~~-~~~~~~~ 149 (231) T 2ozz_A 74 LAAESYLS-QNNL-CIALELGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFF-GDSDVERVDL-SYHESLQ 149 (231) T ss_dssp HHHHHHHH-HSCE-EEEEECCTTSSSCCEEEEEETTCGGGCCEEEECTTCHHHHHHHHHHH-TTSCCEEEEC-CHHHHHH T ss_pred HHHHHHHH-CCCC-EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCC-CCCCEEEEEC-CHHHHHH T ss_conf 88999996-6998-59999503332245545667831059999998899869999998499-8455599974-8899999 Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC--CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 987396029982504799999836780010025644--42371010002777579999887744331121233015208 Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI--ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNI 261 (342) Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~--iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv 261 (342) +|.+|++||++.+.......... ++....+..+. .......+++|++++....+|+ +++.+++.-=.|..+ T Consensus 150 al~~G~iDa~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vrk~~~~l~~lv~----a~v~~~~v~~~Q~~v 222 (231) T 2ozz_A 150 RIVKGDVDAVIWNVVAENELTML--GLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLR----AVVDKHALLAHQQRV 222 (231) T ss_dssp HHHHTSCCEEEEEC-CHHHHHHT--TEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHH----HHCCHHHHHHHHHHH T ss_pred HHHCCCEEEEEECCHHHHHHHHC--CCCEEEECCCCCCCCCCEEEEEECCCCHHHHHHHH----HHHHHHHHHHHHHHH T ss_conf 98719734999683899998637--87437710466555675499999699899999999----998489999999999 No 29 >3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Probab=99.46 E-value=1.4e-12 Score=98.61 Aligned_cols=203 Identities=17% Similarity=0.175 Sum_probs=125.3 Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHH--HHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEECCC-CC Q ss_conf 57949998717898830688989880150999999--9999679822025998143-10026774396279981243-25 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRA--LSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSRNTD-WT 107 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~ra--iAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~~~T-~T 107 (342) +..+||+|+.+.+.|+- +++. +-+.-+.+ .+|+|+..+. .....+|.+|++|+...+.+ .. T Consensus 27 ~~~~lrIg~~~~~~~~~--------------va~~~G~f~~~~~~-~~v~~~~~~~g~~~~~al~sG~~D~~~~~~~~~~ 91 (324) T 3ksx_A 27 EPAQLRIGYQKAVSSLV--------------LAKQHRLLEQRFPR-TKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPL 91 (324) T ss_dssp CCSEEEEEEETTCHHHH--------------HHHHHTHHHHHCTT-SEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHH T ss_pred CCCEEEEEEECCCCHHH--------------HHHHHCHHHHHCCC-CCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHH T ss_conf 99759999616865799--------------99984869783899-8279997897799999998499288964659999 Q ss_pred CCCHHCCCCCCCC--CCCC--CCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC---CEEEECCHH Q ss_conf 3201102784353--2234--40234630211347536417862034313426999999998629985---078747989 Q gi|254780170|r 108 LLREISLGLAFRP--ITYF--DGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKY---HPIVFERVE 180 (342) Q Consensus 108 ~~Rd~~~~v~Fs~--~~~~--dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~ 180 (342) ..| ..+.++.. .++. .+..++++++++|++++||+||+|++..|++.+..+..++++.|++. +++.. +.. T Consensus 92 ~~~--~~G~~~~~v~~~~~~~~~~~iv~~~~s~i~s~~DLkGK~v~v~~gs~~~~~l~~~L~~~Gl~~~dV~~v~~-~~~ 168 (324) T 3ksx_A 92 FAQ--AAGADLLYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPA 168 (324) T ss_dssp HHH--HTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHH T ss_pred HHH--HCCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEC-CHH T ss_conf 999--87998599998963798428998089999997893899898756873067999999987997323540125-826 Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCC--HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998739602998250479999983678001002564442371010002777--579999887744331121233 Q gi|254780170|r 181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGD--TEWYNIVSWTHYAMVTAEELG 255 (342) Q Consensus 181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD--~~w~d~V~W~~~ali~Aee~g 255 (342) +...+|.+|++|+++.-.+....... +...+++....-...|....+-..+ .+-.++|+-.+.++..|.++- T Consensus 169 ~~~~al~~G~vDa~~~~~p~~~~~~~---~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~v~~fl~a~~~a~~~~ 242 (324) T 3ksx_A 169 NARAAFAAGQVDAWAIWDPWYSALTL---DGSARLLANGEGLGLTGGFFLSSRRYATAWGPFVQQVMGTLNQADGLL 242 (324) T ss_dssp HHHHHHHTTCCSEEEEETTHHHHHHH---TTSEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCEEEECCHHHHHHHH---CCCCEEEECCCCCCCCCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHH T ss_conf 66666531350099981579999997---499489971444687664389858888679899999999999999999 No 30 >2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Probab=99.33 E-value=1.3e-10 Score=86.25 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=113.7 Q ss_pred CEEEEEECC-CCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCC--CCCC--CCEEEEEECCCCCCCHHHHCCCCEEE Q ss_conf 202599814-310026774396279981243253201102784353--2234--40234630211347536417862034 Q gi|254780170|r 76 SKIQYLPLN-AKERFLALQSKQIDILSRNTDWTLLREISLGLAFRP--ITYF--DGQGFIMHKKKGISSVSQLSGASICV 150 (342) Q Consensus 76 ~kVe~v~~~-~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~--~~~~--dgq~~lVrk~~~i~s~~dL~G~~I~v 150 (342) .+||++..+ +.....+|.+|++|+.+.+.+.... ....+.++.. ..+. ....++++++++|++++||+||+|++ T Consensus 32 ~~Ve~~~~~~g~~~~~al~~G~iD~~~~~~~~~l~-~~~~G~~~~~v~~~~~~~~~~~~~~~~~s~i~s~~DLkGK~Iav 110 (308) T 2x26_A 32 SKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIF-AQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAF 110 (308) T ss_dssp SEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHHH-HHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEE T ss_pred CEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHH-HHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHCCCCCCC T ss_conf 80799978987999999984997889957399999-99879897999997057744899987898879988946972233 Q ss_pred EECCCHHHHHHHHHHHCCCC---CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEE Q ss_conf 31342699999999862998---507874798999999873960299825047999998367800100256444237101 Q gi|254780170|r 151 QAGTTTELTLADYFKAHNMK---YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLA 227 (342) Q Consensus 151 ~~GTT~e~~l~~~~~~~~~~---~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg 227 (342) ..|++++..+..++++.|++ ++++.. ...++.++|.+|++||++.-.+.+.-.... . ....+....-...+.. T Consensus 111 ~~g~~~~~~~~~~L~~~Gl~~~dv~~v~~-~~~~~~~al~~g~vda~~~~ep~~~~~~~~--g-~~~~l~~~~~~~~~~~ 186 (308) T 2x26_A 111 QKGSSSHNLLLRALRQAGLKFTDIQPTYL-TPADARAAFQQGNVDAWAIWDPYYSAALLQ--G-GVRVLKDGTDLNQTGS 186 (308) T ss_dssp CTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTSSSEEEEETTHHHHHHHH--S-SEEEEEESTTSCCCCE T ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEEEC-CCHHHHHHHHCCCCCEEEECCHHHHHHHHC--C-CCEEEEECCCCCCCCE T ss_conf 58865899999999983998424476305-825677776422554899636169999975--9-9489973565687744 Q ss_pred -EECCCC-CHHHHHHHHHHHHHHHHHHHHH Q ss_conf -000277-7579999887744331121233 Q gi|254780170|r 228 -PAIIQG-DTEWYNIVSWTHYAMVTAEELG 255 (342) Q Consensus 228 -~avr~g-D~~w~d~V~W~~~ali~Aee~g 255 (342) .++++. =.+-.++|+-.+.++..|-++- T Consensus 187 ~~~~~~~~~~~~p~~v~~fl~a~~~a~~~~ 216 (308) T 2x26_A 187 FYLAARPYAEKNGAFIQGVLATFSEADALT 216 (308) T ss_dssp EEEEEHHHHHHTHHHHHHHHHHHHHHHHHH T ss_pred EEEECHHHHHHCHHHHHHHHHHHHHHHHHH T ss_conf 899616888879699999999999999999 No 31 >3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Probab=99.22 E-value=1e-09 Score=80.42 Aligned_cols=213 Identities=15% Similarity=0.115 Sum_probs=135.3 Q ss_pred HCCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-------------CCCCCHHH Q ss_conf 5794999871789883068898-------988015099999999996798220259981-------------43100267 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPL-------------NAKERFLA 91 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~-------------~~~~rf~a 91 (342) ....|++++.. .|||.+...+ .+++||.+|+.+.+|+.+.- ..++... +|...+.. T Consensus 382 ~~~~l~v~~~~-~~P~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~lnf---~~~~~~~~~~~~g~~~~~~~~~~g~~~~ 457 (823) T 3kg2_A 382 EQKTVVVTTIL-ESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGF---KYKLTIVGDGKYGARDADTKIWNGMVGE 457 (823) T ss_dssp CCCCEEEEECC-CTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECSSCCCCCBCTTTCCBCHHHHH T ss_pred CCCCCCCCCCC-CCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCCHHHHHH T ss_conf 67410005545-6981999478888899864535769999998864596---0799987778758765888751456643 Q ss_pred HHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCC-CH------------------------------ Q ss_conf 74396279981243253201102784353223440234630211347-53------------------------------ Q gi|254780170|r 92 LQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGIS-SV------------------------------ 140 (342) Q Consensus 92 L~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~-s~------------------------------ 140 (342) |.+|++|+.++++++|.+| ...++|+.||+.++..++|++..... ++ T Consensus 458 l~~~~~D~ai~~~~it~~r--~~~v~fs~p~~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~~~~~~~ 535 (823) T 3kg2_A 458 LVYGKADIAIAPLTITLVR--EEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVS 535 (823) T ss_dssp HHTTSCSEECSCCBCCHHH--HTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC T ss_pred HHCCCCCEEEEEEEECHHH--HHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2000234699999970787--51224353114533699997577777208898703638999999999999999999999 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254780170|r 141 -------------------------------------------------------------------------------- 140 (342) Q Consensus 141 -------------------------------------------------------------------------------- 140 (342) T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~p~s~~~R~l~~~~~l~~lil~~~Y~a~L~s~l 615 (823) T 3kg2_A 536 RFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 615 (823) T ss_dssp -----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHCHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 85546431400025655555421110069999999999986677643346568999999999999999999998777521 Q ss_pred ------------HHHC--C-CCEEEEECCCHHHHHHHHHHHCCCC------------CCEEEECCHHHHHHHHHCCC-EE Q ss_conf ------------6417--8-6203431342699999999862998------------50787479899999987396-02 Q gi|254780170|r 141 ------------SQLS--G-ASICVQAGTTTELTLADYFKAHNMK------------YHPIVFERVEEIDAAYRAHR-CD 192 (342) Q Consensus 141 ------------~dL~--G-~~I~v~~GTT~e~~l~~~~~~~~~~------------~~~v~~~~~~~a~~al~~Gr-~D 192 (342) +||. + ..+++..++..+. ++...... -....+.+..+.+..+..++ .. T Consensus 616 t~~~~~~~i~sl~dL~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (823) T 3kg2_A 616 TVERMVSPIESAEDLSKQTEIAYGTLDSGSTKE----FFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKY 691 (823) T ss_dssp HHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHH----HHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSE T ss_pred CCCCCCCCCCCHHHHHHCCCCEEEEECCCHHHH----HHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCE T ss_conf 345457897899999747885599964707999----9986552679999998632474223589999999997269868 Q ss_pred EEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 99825047999998367800100256444237101000277757999988774433112123301520 Q gi|254780170|r 193 AYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKN 260 (342) Q Consensus 193 A~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~n 260 (342) |+..|...+... ...++.++.++++.+...++++++++|= -|++..+..+.- -.|.|+-+.= T Consensus 692 a~~~~~~~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~k~S-p~~~~~n~~i~~---l~e~Gl~~~~ 753 (823) T 3kg2_A 692 AYLLESTMNEYI--EQRKPCDTMKVGGNLDSKGYGIATPKGS-SLGTPVNLAVLK---LSEQGLLDKL 753 (823) T ss_dssp EEEEEHHHHHHH--HTSTTCCEEEESCCSSCEEECCEEETTC-SSHHHHHHHHHH---HHHTTHHHHH T ss_pred EEEECHHHHHHH--HHCCCCCEEEECCCCCCCCEEEEECCCC-HHHHHHHHHHHH---HHHCCHHHHH T ss_conf 999627999999--9617988599586145661799989988-418999999999---9747899999 No 32 >1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Probab=99.15 E-value=2.5e-10 Score=84.35 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=101.9 Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEECCCCCCC---- Q ss_conf 499987178988306889898801509999999999679822025998143-100267743962799812432532---- Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSRNTDWTLL---- 109 (342) Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~~~T~T~~---- 109 (342) .|++|+.. | .|.|--+-..+|+.+.+.. +...++.++... .+.+..|.+|++|+.+.....-.. T Consensus 20 ~l~i~tg~--~-------gg~~~~~g~~ia~~~~~~~--~gi~~~~~~t~Gs~~N~~~l~~g~~d~a~~~~~~~~~~~~~ 88 (314) T 1us5_A 20 FITIGSGS--T-------TGVYFPVATGIAKLVNDAN--VGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQG 88 (314) T ss_dssp EEEEECCC--T-------TSSHHHHHHHHHHHHHHHT--SSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHT T ss_pred EEEEEECC--C-------CCCHHHHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHC T ss_conf 48999799--9-------9714999999999997358--98489998078889999999769971999750899999846 Q ss_pred -----CH--HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHHHHHHHHHHHCCCCC---CEEEECC Q ss_conf -----01--10278435322344023463021134753641786203431-3426999999998629985---0787479 Q gi|254780170|r 110 -----RE--ISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA-GTTTELTLADYFKAHNMKY---HPIVFER 178 (342) Q Consensus 110 -----Rd--~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e~~l~~~~~~~~~~~---~~v~~~~ 178 (342) .+ ....+.-..+.|.....++||++++|++++||+||+|.+.. |+.++.+....++..++.. ..+.+.+ T Consensus 89 ~g~~~~~~~~~~~lr~v~~~~~~~~~~~v~~ds~I~s~~DL~Gkrv~~g~~gs~~~~~~~~~l~~~g~~~~d~~~v~~~~ 168 (314) T 1us5_A 89 CCIPAFEGKPVKTIRALAALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVS 168 (314) T ss_dssp CSSTTTTTCCCTTEEEEEEEEEEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCC T ss_pred CCCCCCCCCCCCCEEEEEEECHHHHEEEECCCCCCCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECC T ss_conf 68753345754040278870511331330377776778880887751368885136689999998099834463234268 Q ss_pred HHHHHHHHHCCCEEEEEECC Q ss_conf 89999998739602998250 Q gi|254780170|r 179 VEEIDAAYRAHRCDAYTGDI 198 (342) Q Consensus 179 ~~~a~~al~~Gr~DA~~~D~ 198 (342) ..++..++.+|++||++.-. T Consensus 169 ~~~~~~al~~g~iDa~~~~~ 188 (314) T 1us5_A 169 ASQGIQLMQDKRADALFYTV 188 (314) T ss_dssp HHHHHHHHHTTSCSEEEEEE T ss_pred HHHHHHHHHCCCCCEEEEEC T ss_conf 88999997479752799825 No 33 >2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A Probab=99.06 E-value=2.7e-09 Score=77.77 Aligned_cols=127 Identities=15% Similarity=0.090 Sum_probs=91.3 Q ss_pred CEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCC--CCCCCC-CCEEEEEECCCCCCCHHHHCCCCEEEE Q ss_conf 20259981-43100267743962799812432532011027843--532234-402346302113475364178620343 Q gi|254780170|r 76 SKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLREISLGLAF--RPITYF-DGQGFIMHKKKGISSVSQLSGASICVQ 151 (342) Q Consensus 76 ~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~F--s~~~~~-dgq~~lVrk~~~i~s~~dL~G~~I~v~ 151 (342) .+|+++.. .+...+.+|.+|++|+....... ..+....+.+. ...++. .+++++|+++++|++++||+||+|++. T Consensus 47 ldV~~~~~~~~~~~~~al~~G~~D~~~~~~~~-~~~a~~~g~~~~~i~~~~~~~~~~l~v~~~s~I~s~~DLkGk~i~v~ 125 (365) T 2de3_A 47 IELDVLSGQQGTVHFTYDQPAYTRFGGEIPPL-LSEGLRAPGRTRLLGITPLLGRQGFFVRDDSPITAAADLAGRRIGVS 125 (365) T ss_dssp CEEEECBGGGTTHHHHCCSTTEEEEECSHHHH-HHHHTTCTTSEEEEEEEEECCSEEEEEETTCSCCSGGGGTTCEEEEC T ss_pred CCEEEEECCCCHHHHHHHHCCCCCEEEECHHH-HHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHCCCEEECC T ss_conf 91799967882799999975983789305899-99997489986999997438850899978877788699789835025 Q ss_pred --------------------------ECCCHHHHHHHHHHHCCCC---CCEEEECC------------------------ Q ss_conf --------------------------1342699999999862998---50787479------------------------ Q gi|254780170|r 152 --------------------------AGTTTELTLADYFKAHNMK---YHPIVFER------------------------ 178 (342) Q Consensus 152 --------------------------~GTT~e~~l~~~~~~~~~~---~~~v~~~~------------------------ 178 (342) .||+++..+..+++..|++ +++|..+. T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~l~~~l~~~Gl~~~dV~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (365) T 2de3_A 126 ASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPD 205 (365) T ss_dssp HHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTCCCHHHHHHSSBSSHHHHSTT T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 66420135666543102333212457786799999999998499989937620480444444431000013444321234 Q ss_pred -HHHHHHHHHCCCEEEEEECCHHHHH Q ss_conf -8999999873960299825047999 Q gi|254780170|r 179 -VEEIDAAYRAHRCDAYTGDISALYA 203 (342) Q Consensus 179 -~~~a~~al~~Gr~DA~~~D~s~La~ 203 (342) .....++|.+|++||++.-.+...- T Consensus 206 ~~~~~~aAL~~G~VDA~~~~~P~~~~ 231 (365) T 2de3_A 206 VARGQAAVLASGDVDALYSWLPWAGE 231 (365) T ss_dssp HHHHHHHHHHSSSCSEEEEEHHHHHH T ss_pred CCHHHHHHHHCCCEEEEEECCHHHHH T ss_conf 42048999976982699965755999 No 34 >3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Probab=99.02 E-value=1.5e-09 Score=79.42 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=125.6 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCC-CCCCC Q ss_conf 794999871789883068898988015099999999996798220259981-4310026774396279981243-25320 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTD-WTLLR 110 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T-~T~~R 110 (342) ..+|++|+-+...+- +....--.|.+.+.++++ .+|++++. ++...+.+|.+|++|+.+-+.. +-..+ T Consensus 3 ~~~l~fg~~p~~~~~-------~~~~~~~pl~~~L~~~lG---~~V~~~~~~dy~~~ieal~~g~vDia~~~~~~~~~a~ 72 (310) T 3n5l_A 3 QPVINFGIISTESSQ-------NLKSIWEPFLKDMSQQTG---YQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAV 72 (310) T ss_dssp CCEEEEEECCSSCHH-------HHHHHHHHHHHHHHHHHS---SEEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHH T ss_pred CCEEEEEECCCCCHH-------HHHHHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHHH T ss_conf 986999977899999-------999999999999999769---9579997599999999997699868998928999998 Q ss_pred HHCCCCCCCCCCCCCC-----EEEEEECCCCCCCHHHHC----CCCEEEE-ECCCHHHHHHH--HHHHCCCC----CCEE Q ss_conf 1102784353223440-----234630211347536417----8620343-13426999999--99862998----5078 Q gi|254780170|r 111 EISLGLAFRPITYFDG-----QGFIMHKKKGISSVSQLS----GASICVQ-AGTTTELTLAD--YFKAHNMK----YHPI 174 (342) Q Consensus 111 d~~~~v~Fs~~~~~dg-----q~~lVrk~~~i~s~~dL~----G~~I~v~-~GTT~e~~l~~--~~~~~~~~----~~~v 174 (342) +.....-|..+...+| ..++||+|++|++++||. |++++.. .+||+--.+.. .+...++. ++.+ T Consensus 73 ~~~~~~~~~~~~~~~g~~~y~s~liv~~ds~i~sl~DL~gk~kg~~~a~~d~~Stsg~l~p~~~l~~~~gi~~~~~f~~v 152 (310) T 3n5l_A 73 DRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRT 152 (310) T ss_dssp HHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEE T ss_pred HCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE T ss_conf 60598056652034788761089999688776657777410000000247876327889999999986499840042347 Q ss_pred EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC-CCHHHCCCCCCCCCCC---EEEECCCC-CHHHHHHHHHHHHHH Q ss_conf 74798999999873960299825047999998367-8001002564442371---01000277-757999988774433 Q gi|254780170|r 175 VFERVEEIDAAYRAHRCDAYTGDISALYALKLTND-RPSEHVILPDIISKSP---LAPAIIQG-DTEWYNIVSWTHYAM 248 (342) Q Consensus 175 ~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~-~p~~~~il~e~iskEP---lg~avr~g-D~~w~d~V~W~~~al 248 (342) .+.+++.+..++.+|++||.+.+...+.-+....+ ..++.+|+-+. +| ..+++|++ +++.++.++=.+..| T Consensus 153 ~~~sh~~~~~aV~~G~vDaa~~~~~~~~~~~~~~~~~~~~lrvI~~S---~~iP~~~i~~~~~l~~e~~~~i~~all~~ 228 (310) T 3n5l_A 153 LNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKS---PLIPGDPLVWRNNLSDEQKNKLRDFFFKY 228 (310) T ss_dssp EECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEE---EEEECCEEEEETTSCHHHHHHHHHHHHHC T ss_pred ECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCHHHHHCCEEEEEC---CCCCCCEEEEECCCCHHHHHHHHHHHHHC T ss_conf 60783889999986998789851799999998470445162699867---99888738992989999999999999846 No 35 >3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Probab=98.97 E-value=4.1e-09 Score=76.69 Aligned_cols=173 Identities=16% Similarity=0.080 Sum_probs=106.0 Q ss_pred CEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCC-CCCHHCCCCCC---CCCCCCCCEEEEEECCCCCCCHHHHCCCCEEE Q ss_conf 20259981-431002677439627998124325-32011027843---53223440234630211347536417862034 Q gi|254780170|r 76 SKIQYLPL-NAKERFLALQSKQIDILSRNTDWT-LLREISLGLAF---RPITYFDGQGFIMHKKKGISSVSQLSGASICV 150 (342) Q Consensus 76 ~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T-~~Rd~~~~v~F---s~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v 150 (342) .+||+++. ++...+.+|.+|++|+.+.++... ..| ..+.++ ...+-..+.+++++++++|++++||+||+|++ T Consensus 34 l~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~l~~~~~~~i~~~~DLkGK~v~~ 111 (302) T 3ix1_A 34 LDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILAR--SKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLTVGY 111 (302) T ss_dssp EEEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHH--HTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTSEEEE T ss_pred CEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHH--HCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHCCCCCCC T ss_conf 7189995798059999997799898997758999987--33488589985405897369985377988878956762217 Q ss_pred EECCCHHHHHHHHHHHCCCCC---CEEEECCHHHHHHHHHCCCEEEEEECC--HHHHHHHHHCCCCHHHCCC-CCCCCCC Q ss_conf 313426999999998629985---078747989999998739602998250--4799999836780010025-6444237 Q gi|254780170|r 151 QAGTTTELTLADYFKAHNMKY---HPIVFERVEEIDAAYRAHRCDAYTGDI--SALYALKLTNDRPSEHVIL-PDIISKS 224 (342) Q Consensus 151 ~~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~~a~~al~~Gr~DA~~~D~--s~La~~~~~~~~p~~~~il-~e~iskE 224 (342) ..+++++..+..+++..|++. +++... .+...+|.+|++||++..- ......+.. .. +..++ +....-. T Consensus 112 ~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~--~~~~~al~~G~iDa~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~g~~ 186 (302) T 3ix1_A 112 PGIPVNEPILKTMVEAAGGDYEQVHLMDVG--FELGASIVSGRADAVVGTYINHEYPVLKHE-GH--DISYFNPVDYGVP 186 (302) T ss_dssp CSCTTHHHHHHHHHHHTTCCGGGCEEEECT--TCHHHHHHHSSSSEEEEEETTTHHHHHHHT-TC--CEEEECGGGTTCC T ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEECCC--CCHHHHHHCCCCCEECCCCCCCHHHHHHHC-CC--CCCCCCHHHCCCC T ss_conf 899778999999999728997611784588--438999985997700065466089999862-87--6322258870988 Q ss_pred CE---EEECCCC-CHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10---1000277-7579999887744331121233 Q gi|254780170|r 225 PL---APAIIQG-DTEWYNIVSWTHYAMVTAEELG 255 (342) Q Consensus 225 Pl---g~avr~g-D~~w~d~V~W~~~ali~Aee~g 255 (342) ++ ..++++. -.+=.++|+-.+.|+..|-++- T Consensus 187 ~~~~~~~~~~~~~~~~~p~~v~~f~~A~~~a~~~~ 221 (302) T 3ix1_A 187 EYDELVLISNEAYVEESGEVLAAFWRAALKGYEWM 221 (302) T ss_dssp CCCSEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCEECCHHHHHHCHHHHHHHHHHHHHHHHHH T ss_conf 87663110469999879699999999999999999 No 36 >3hn0_A Nitrate transport protein; YP_001302749.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Parabacteroides distasonis} Probab=98.78 E-value=1.1e-08 Score=73.89 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=97.0 Q ss_pred CEEEEEEECCCCC--C-EEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCC Q ss_conf 9499987178988--3-06889898801509999999999679822025998-143100267743962799812432532 Q gi|254780170|r 34 GFLKCGINTGLVG--F-AEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLL 109 (342) Q Consensus 34 G~L~vGv~~~~pp--f-s~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~ 109 (342) -+||||+-.+.+. + .....+|...+ ..+++.. -+......+|.+|++|+....+..... T Consensus 5 ~~irv~~~~~p~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~s~~~~~~~l~~G~~D~~~~~~~~~~~ 67 (283) T 3hn0_A 5 TVIKVSVLRGPSVIAFADWLENPPIIDN-----------------KKVQVKVVDSPDLAQALLIKQETDIAVLPMINAAN 67 (283) T ss_dssp CEEEEEEESSTHHHHTHHHHHSCCEETT-----------------EEEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHH T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCC-----------------CCEEEEEECCHHHHHHHHHCCCCCEEEECHHHHHH T ss_conf 6599992589618999999984474578-----------------98689995799999999977999899736899999 Q ss_pred CHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHH Q ss_conf 011027843532234402346302113475364178620343-13426999999998629985078-7479899999987 Q gi|254780170|r 110 REISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYR 187 (342) Q Consensus 110 Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~ 187 (342) - ...++++.-. +..++....|.+.+||+||+|++. .||+.+..+..+++++|++.+.. .+.+..+..++|. T Consensus 68 ~-~~~G~~i~ii------a~~~~g~~~ivs~~DLkGk~i~~~~~gs~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~al~ 140 (283) T 3hn0_A 68 L-YNKGIKIKLA------GCPIWGTLYLVEKTPLKEPALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGIL 140 (283) T ss_dssp H-HHTTCSCEEE------EEEECCCCEEEECSSCCSCCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHH T ss_pred H-HHCCCCEEEE------EEECCCCCEEEEHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH T ss_conf 9-9689974899------98415863486378749899999389978999999999977998440367438288899986 Q ss_pred CCCEEEEEECCHHH Q ss_conf 39602998250479 Q gi|254780170|r 188 AHRCDAYTGDISAL 201 (342) Q Consensus 188 ~Gr~DA~~~D~s~L 201 (342) +|++||.+.-.+.. T Consensus 141 ~g~vDaa~~~eP~~ 154 (283) T 3hn0_A 141 AGKVNRAVLGEPFL 154 (283) T ss_dssp HTSCSEEEECTTHH T ss_pred CCCCCEEEECCHHH T ss_conf 79977898443689 No 37 >3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis} Probab=98.34 E-value=1.1e-05 Score=55.05 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=103.7 Q ss_pred HHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCC Q ss_conf 9985794999871789883068898988015099999999996798220259981-431002677439627998124325 Q gi|254780170|r 29 DIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWT 107 (342) Q Consensus 29 ~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T 107 (342) .-.+..+|++|+.++ |++- +-.+..+.+++..+ .+||+++. ++.....||.+|++|+-+.....- T Consensus 18 ~~~~~~~i~ig~~~~--~~~~---------~~~~~v~~~~k~~G---i~Ve~v~f~d~~~~n~AL~~G~iD~n~~q~~p~ 83 (275) T 3gxa_A 18 NGAAKKEIVFGTTVG--DFGD---------MVKEQIQPELEKKG---YTVKLVEFTDYVRPNLALAEGELDINVFQHKPY 83 (275) T ss_dssp -----CEEEEEEETT--HHHH---------HHHHTHHHHHHTTT---CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHH T ss_pred CCCCCCEEEEEEECC--CHHH---------HHHHHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEECCCCHHH T ss_conf 778885289996069--8799---------99999899999659---879999957833578998669955431445788 Q ss_pred CC---CHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHHHHHCCC-------------- Q ss_conf 32---01102784353223440234630211347536417-8620343134269999999986299-------------- Q gi|254780170|r 108 LL---REISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS-GASICVQAGTTTELTLADYFKAHNM-------------- 169 (342) Q Consensus 108 ~~---Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~~~~~~~-------------- 169 (342) +. ++....+....+++....++..+ +++|++||. |++|++...++.+..+-..+...|+ T Consensus 84 l~~~~~~~g~~l~~v~~~~~~~~glys~---k~ksl~dl~~G~kIaip~d~sn~~raL~~L~~~Gli~l~~~~~~~~~t~ 160 (275) T 3gxa_A 84 LDDFKKEHNLDITEVFQVPTAPLGLYPG---KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASK 160 (275) T ss_dssp HHHHHHHHTCCEEEEEECCBCCCEEEES---SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCG T ss_pred HHHHHHHCCCCEEEEEEEECCCEEEEEC---CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCCC T ss_conf 9999997799679985631155066632---6565413589998998248636889999998669531168877554540 Q ss_pred --------CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCH Q ss_conf --------850787479899999987396029982504799999836780010025644423710100027775 Q gi|254780170|r 170 --------KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDT 235 (342) Q Consensus 170 --------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~ 235 (342) .++++..+ ......+| +.+|+.+...+ ......+ +|.+....+ .-+.-+..+++|++|. T Consensus 161 ~di~~n~~~l~~~~~~-~~~l~~~l--~dvD~avi~~~--~~~~agl-~~~~~l~~e-~~~~y~nvivvr~~~~ 227 (275) T 3gxa_A 161 ADIAENLKNIKIVELE-AAQLPRSR--ADVDFAVVNGN--YAISSGM-KLTEALFQE-PSFAYVNWSAVKTADK 227 (275) T ss_dssp GGEEECTTCCEEEEEC-GGGHHHHT--TTSSEEEECHH--HHHHTTC-CGGGCSEEC-CCCTTCCEEEEEGGGT T ss_pred CHHHHCCCCCEEEECC-HHHHHHHC--CCCCEEEECCC--HHHHCCC-CHHHCCCCC-CCCCEEEEEEEECCCC T ss_conf 0043276564599856-66631312--67558996464--6877599-823400027-7876369999807677 No 38 >1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Probab=98.32 E-value=2.9e-06 Score=58.62 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=102.4 Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCC--- Q ss_conf 94999871789883068898988015099999999996798220259981-43100267743962799812432532--- Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLL--- 109 (342) Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~--- 109 (342) .+||+|+.+. |... -.++++...+.-+ .+|||++. ++.+...||.+|++|+.+.+.+..+. T Consensus 3 ~ti~iG~~~~-~~~~-----------~l~~~k~~~k~~G---l~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~ 67 (241) T 1xs5_A 3 ETVGVGVLSE-PHAR-----------LLEIAKEEVKKQH---IELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFN 67 (241) T ss_dssp EEEEEEECST-THHH-----------HHHHHHHHHHTTT---EEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHH T ss_pred CEEEEEECCC-CHHH-----------HHHHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHH T ss_conf 3299996069-8599-----------9999999999749---88999993881778999976997679855788999988 Q ss_pred CHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCCC-CC-----------CE--- Q ss_conf 0110278435322344023463021134753641-78620343134269999999986299-85-----------07--- Q gi|254780170|r 110 REISLGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHNM-KY-----------HP--- 173 (342) Q Consensus 110 Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~-~~-----------~~--- 173 (342) |.....+-....++..+.+++.++ ++++.|+ +|++|++..+++++..+...+.+.++ .. .+ T Consensus 68 ~~~~~~l~~v~~~~~~~~~l~~~~---~~s~~d~~~gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~~~~~~Di~~~ 144 (241) T 1xs5_A 68 QEHNGDLVSVGNVHVEPLALYSRT---YRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQN 144 (241) T ss_dssp HHHTCCEEEEEEEEECCCEEECSS---CCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEEC T ss_pred HHCCCCEEEEEEECCCCEEEEECC---CCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHC T ss_conf 546973899988414654888368---67766734887698258882799999999975881343688876776566534 Q ss_pred ---EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCC Q ss_conf ---8747989999998739602998250479999983678001002564442371010002777 Q gi|254780170|r 174 ---IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGD 234 (342) Q Consensus 174 ---v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD 234 (342) +.+-..+.+..++..|.+|+.+.-.+.+. ........+..+.++.....+..+++|+.+ T Consensus 145 ~~~~~~~~~~~a~~a~~~~~vda~~~~~p~~~--~a~~~~~~~~l~~~~~~~~~~~~lv~r~~~ 206 (241) T 1xs5_A 145 VRNVVLQEVESALLPRVFDQVDGAVINGNYAI--MAGLSARRDGLAVEPDASAYANVLVVKRGN 206 (241) T ss_dssp TTCCEEEEECGGGHHHHGGGSSEEEECHHHHH--HTTCCTTTTCSEECSCGGGGCEEEEEETTC T ss_pred CCCCCCCCCCHHHHHHHCCCCCEEEECCCHHH--HHCCCCCCCEEEECCCCCCEEEEEEECCHH T ss_conf 34454257447677774277757996464899--855887667799637898637999983401 No 39 >3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium} Probab=98.22 E-value=2e-07 Score=65.90 Aligned_cols=206 Identities=12% Similarity=0.096 Sum_probs=111.0 Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCC-CCCC Q ss_conf 579499987178988306889898801509999999999679822025998-14310026774396279981243-2532 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTD-WTLL 109 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T-~T~~ 109 (342) +..+|++|+.... +.+....-|---|++.+.++++ .+.+|+++. .+....+.+|.+|++|+.+-+.. +-.. T Consensus 6 ~~~~l~~~~~~~~------~~~~~~~~~~~pl~~~Ls~~l~-~~V~V~~~~~~Dy~~~ieal~~g~~Dia~~gp~~yv~a 78 (344) T 3myu_A 6 SDNTLIFNISLDH------NADTSIEKFFTVFSKKLSGKLN-KKINVNFNIVDDSFTKINNIQANKADFAFVNSQAIASN 78 (344) T ss_dssp --CEEEEEECCCT------TGGGTHHHHHHHHHHHHHHHHT-SCCEEEEEECCCHHHHHHHHHTTSCSEEEECGGGCCCC T ss_pred CCCCEEEEECCCC------CCHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHH T ss_conf 8881699960488------8578899999999999999868-96589999648799999999779956899790999975 Q ss_pred CHHCC-----------CCCCC------------------------------------------------CCCCCCCEEEE Q ss_conf 01102-----------78435------------------------------------------------32234402346 Q gi|254780170|r 110 REISL-----------GLAFR------------------------------------------------PITYFDGQGFI 130 (342) Q Consensus 110 Rd~~~-----------~v~Fs------------------------------------------------~~~~~dgq~~l 130 (342) ++... ..+.. ...+|.| .++ T Consensus 79 ~~~~~~~~l~~~~~~~~~d~~~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Y~~-~I~ 157 (344) T 3myu_A 79 NWFGYTPLIQTLTTAFKEDLELDYYEDGNLQKKAEKTNLLFLSPPYKEWDDIKQKWTGNRYDFLYEPSKLVSFYRS-MIL 157 (344) T ss_dssp TTSSEEEEEEEEEEEETTBCSCCCGGGTHHHHHHHHHHHHHHSSCGGGCCTTTTTBCSSSBGGGEEEEEEESEEEE-EEE T ss_pred HHHCCCCHHHEEHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-EEE T ss_conf 6515530200001013455554222466312322221000124543334443223567554221024567663268-999 Q ss_pred EE----------CCCCCCCHHHHCCCCEEEEE-CCCHHHHH-HHHHHHCCCC-CC------EEEECCHHHHHHHHHCCCE Q ss_conf 30----------21134753641786203431-34269999-9999862998-50------7874798999999873960 Q gi|254780170|r 131 MH----------KKKGISSVSQLSGASICVQA-GTTTELTL-ADYFKAHNMK-YH------PIVFERVEEIDAAYRAHRC 191 (342) Q Consensus 131 Vr----------k~~~i~s~~dL~G~~I~v~~-GTT~e~~l-~~~~~~~~~~-~~------~v~~~~~~~a~~al~~Gr~ 191 (342) |+ ++++|++++||+|++|+... +||+--.+ ..++.+++.. .+ .+...+++.+..++.+|++ T Consensus 158 v~~~~~~~~~ikk~s~ik~l~DLkGk~iaf~d~~StSGyl~P~~~L~~~g~~~~~~~~~~~~~~~g~h~~~~~aV~~G~~ 237 (344) T 3myu_A 158 ITGSASEITAIKKAWNEKNWNQFMKFGIGHGQTNSASRFELPDLLFRKHFAKNYPGLQNAINSDPDKFAVVRGREIGINK 237 (344) T ss_dssp EEESHHHHHHHHHHHHHTCHHHHHTTCEEECCTTCTTTTHHHHHHHHHHHCTTCCCHHHHHHHCGGGEEECCGGGTTSST T ss_pred EECCCHHHHHHHCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEEECCCCHHHHHHHHHCCCC T ss_conf 80572011001036553788896698788348973122388999999814877761221144037857999999977998 Q ss_pred EEEEE-CCHHHH-------HHHH-HC---CCCHHHCCCCCCCCCCCE---EEECCCC-CHHHHHHHHHHHHHH Q ss_conf 29982-504799-------9998-36---780010025644423710---1000277-757999988774433 Q gi|254780170|r 192 DAYTG-DISALY-------ALKL-TN---DRPSEHVILPDIISKSPL---APAIIQG-DTEWYNIVSWTHYAM 248 (342) Q Consensus 192 DA~~~-D~s~La-------~~~~-~~---~~p~~~~il~e~iskEPl---g~avr~g-D~~w~d~V~W~~~al 248 (342) ||-.+ |...-. .... .. ..+++.+|+-+. +|+ .+++|++ |+++++.++=++..| T Consensus 238 Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~S---~~iP~~~i~v~~~L~~e~~~~I~~all~l 307 (344) T 3myu_A 238 NIKIVFDDANSFSWTQNIKGSKRPFYTPIDPNDRLEILTYS---DPLLYDIGIVSNNLSRIYQKAIGEIFIEL 307 (344) T ss_dssp TCCEEEEETTGGGGSCCCC---CCSSCCSSTTSEEEEEEEE---EEEECCEEEEETTSCHHHHHHHHHHHHHH T ss_pred CEEEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEEC---CCCCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 87987332034431013101345542265655544899978---99888728993899999999999999961 No 40 >1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Probab=98.19 E-value=1.8e-05 Score=53.65 Aligned_cols=163 Identities=14% Similarity=0.142 Sum_probs=87.5 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCC- Q ss_conf 794999871789883068898988015099999999996798220259981-431002677439627998124325320- Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLR- 110 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~R- 110 (342) ..++++|+.+. + ...| +..+..++..+ .+||+++. ++.....||.+|++|+...+....+.- T Consensus 38 ~k~i~IG~~~~-~-------~~~~-----~~~~~~~kk~G---l~Ve~~~F~d~~~~~~AL~~G~ID~~~~~~~p~l~~~ 101 (295) T 1p99_A 38 DKKVTIGVASN-D-------TKAW-----EKVKELAKKDD---IDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQY 101 (295) T ss_dssp --CEEEEESSS-C-------CHHH-----HHHHHHHGGGT---CCEEEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHH T ss_pred CCEEEEEECCC-C-------HHHH-----HHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEEECCCHHHHHHH T ss_conf 96499996798-3-------8999-----99999999759---8899998178277999997599676751789999999 Q ss_pred H-HCCCCCC--CCCCCCCCEEEEEECCCCCCCHHH-HCCCCEEEEECCCHHHHHHHHHHHCCC-CC-----------CE- Q ss_conf 1-1027843--532234402346302113475364-178620343134269999999986299-85-----------07- Q gi|254780170|r 111 E-ISLGLAF--RPITYFDGQGFIMHKKKGISSVSQ-LSGASICVQAGTTTELTLADYFKAHNM-KY-----------HP- 173 (342) Q Consensus 111 d-~~~~v~F--s~~~~~dgq~~lVrk~~~i~s~~d-L~G~~I~v~~GTT~e~~l~~~~~~~~~-~~-----------~~- 173 (342) . ...+.++ ..+.+....++ . ...+.++.| ++|++|++..+++++..+-..+...++ +. .+ T Consensus 102 ~k~~~g~~l~~v~~~~~~~~~~--~-~~~~~~i~d~~~Gk~Ia~p~~~s~~~~~l~~l~~~gli~l~~~~~~~~t~~DI~ 178 (295) T 1p99_A 102 KKAHKGTKISALSTTVLAPLGI--Y-SDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDIT 178 (295) T ss_dssp HHHCTTCCEEEEEEEEECCCEE--E-CSSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEE T ss_pred HHHCCCCEEEEECCCCCCCCCC--C-CCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHH T ss_conf 9767995599944521123101--2-656663211258985783368728999999998669277458888777876665 Q ss_pred -----EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC Q ss_conf -----87479899999987396029982504799999836780010025 Q gi|254780170|r 174 -----IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL 217 (342) Q Consensus 174 -----v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il 217 (342) +.+-..+.+..+...|.+||.+.-.+.+ .+... .|....|+ T Consensus 179 ~n~~~~~~~~~~~a~~a~a~~~vDaa~i~~p~~--~~a~~-~~~~~~l~ 224 (295) T 1p99_A 179 SNPKHLKITAVDAQQTARALSDVDIAVINNGVA--TKAGK-DPKNDPIF 224 (295) T ss_dssp ECTTCCEEEEECGGGTTGGGGTSSEEEECHHHH--HHTTC-CTTTSCSE T ss_pred HCCCCCCCCCCCHHHHHHHCCCCCEEEECCHHH--HHHCC-CCCCCEEE T ss_conf 444444545640667787327764899554399--98278-86666588 No 41 >3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus} Probab=98.16 E-value=1.6e-05 Score=53.84 Aligned_cols=184 Identities=12% Similarity=0.005 Sum_probs=105.1 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCC-CC Q ss_conf 79499987178988306889898801509999999999679822025998-14310026774396279981243253-20 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTL-LR 110 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~-~R 110 (342) ..+||+|+.+. | -+ .. +. -.++-+.+..+ .+||+++ .++...+.||.+|++|+...+.+... .. T Consensus 5 ~~~irvG~~~~-~-~~------~~--~~-~~~k~~~e~~G---l~Ve~~~f~~g~~~~~Al~~G~iD~~~~g~~~~~~~~ 70 (237) T 3k2d_A 5 TSKVKVGVMAG-A-EA------QV--AE-VAAKVAKEKYG---LDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQ 70 (237) T ss_dssp CCCEEEEEETT-H-HH------HH--HH-HHHHHHHHHHC---CCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHHH T ss_pred CCEEEEEEECC-C-HH------HH--HH-HHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHH T ss_conf 87389996079-8-59------99--99-99777898669---8899998088256899997699777875457899864 Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHC-CCCCC-----------E----- Q ss_conf 110278435322344023463021134753641786203431342699999999862-99850-----------7----- Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAH-NMKYH-----------P----- 173 (342) Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~-~~~~~-----------~----- 173 (342) ....++.+....-+....+.++.++.++..++++|++|++..+++.+..+...+... +++.+ + T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kGk~ia~~~~~s~~~~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~~~ 150 (237) T 3k2d_A 71 VEDRDYKLTIAGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENPK 150 (237) T ss_dssp HHHHCCCEEEEEECCCCCCEEECSSCSCSTTCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCSSCCGGGEEECTT T ss_pred HCCCCCEEEEEECCCCCEEEEECCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC T ss_conf 10589507998425544069983787655464179879995588449999999998499744655444665020554533 Q ss_pred -EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC Q ss_conf -87479899999987396029982504799999836780010025644423710--10002777 Q gi|254780170|r 174 -IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD 234 (342) Q Consensus 174 -v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD 234 (342) +.+........++..+++|+.+.=.+.... . ...|....++-+-. ..|+ -+++|+.| T Consensus 151 ~~~~~~~~~~~~a~~~~~~da~~~~~p~~~~--a-~~~~~~~~i~~~~~-~~~~~~~~v~r~~~ 210 (237) T 3k2d_A 151 NITIMELDAAQLPRSLDDVALSIINTTYASS--I-NLTPEKDGVFVEDK-ESPYVNLIVARQDN 210 (237) T ss_dssp CCEEEEECGGGHHHHTTTSSEEEECHHHHGG--G-TCCHHHHCSEECCS-SSSCCEEEEEETTT T ss_pred CCCCCCCCHHHHHHHHHCCCEEEECCHHHHH--H-CCCCCCCEEEECCC-CCCEEEEEEECCCC T ss_conf 2243333166779975247636966428887--2-05876555764588-98736999986500 No 42 >2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Probab=98.04 E-value=4.3e-05 Score=51.16 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=101.7 Q ss_pred EEEEEEC-CCCCCHHHH----HCCCEEEEEEC--CCC--CCCC-HHCCCCCC--CCCCCCCCEEEEE-----------EC Q ss_conf 0259981-431002677----43962799812--432--5320-11027843--5322344023463-----------02 Q gi|254780170|r 77 KIQYLPL-NAKERFLAL----QSKQIDILSRN--TDW--TLLR-EISLGLAF--RPITYFDGQGFIM-----------HK 133 (342) Q Consensus 77 kVe~v~~-~~~~rf~aL----~sG~vDil~~~--~T~--T~~R-d~~~~v~F--s~~~~~dgq~~lV-----------rk 133 (342) .|+++.. +|.+...+| .+|++|+.... +.+ ++.. .....+.+ .......|+.+.+ .+ T Consensus 64 dVel~~~~s~~~~~d~l~~g~a~G~lD~a~~~~~~~~a~~lg~~~~~~~~~~~~~~~~~~~g~~I~~s~~~~~~~~~~~~ 143 (417) T 2g29_A 64 DVEVLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNYKDLKVGTDA 143 (417) T ss_dssp TCEEEECSCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGGGGGCCCSCC T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCC T ss_conf 46899657827799999976424661400025116899998776437898889998736687479983232000344565 Q ss_pred CCCCCCHHHHCCCCEEEEE-CCCHHHHHHHHHHHCCCC----CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHC Q ss_conf 1134753641786203431-342699999999862998----50787479899999987396029982504799999836 Q gi|254780170|r 134 KKGISSVSQLSGASICVQA-GTTTELTLADYFKAHNMK----YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTN 208 (342) Q Consensus 134 ~~~i~s~~dL~G~~I~v~~-GTT~e~~l~~~~~~~~~~----~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~ 208 (342) ++.+++++||.|+||++.. +|+++..+..++++.|++ ++++.. ...++..+|.+|++|+++.-.+-..- ... T Consensus 144 ~~~i~s~~dLkGk~igv~~~~s~~~~~lr~~L~~~Gldp~~DV~iv~~-~p~~~~~aL~~G~iDa~~~~eP~~~~--a~~ 220 (417) T 2g29_A 144 APLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNAMESFCVGEPWPLQ--TVN 220 (417) T ss_dssp TTHHHHHHTSSSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHH--HHH T ss_pred CCCCCCHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEC-CHHHHHHHHHCCCCCEEEECCHHHHH--HHH T ss_conf 432109888399989997898649999999999669986664389855-77999999966870389954449999--986 Q ss_pred CCCHHHCCCCCCCCC-CCE-EEECCCCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 780010025644423-710-10002777-579999887744331121233015208988 Q gi|254780170|r 209 DRPSEHVILPDIISK-SPL-APAIIQGD-TEWYNIVSWTHYAMVTAEELGITQKNINQV 264 (342) Q Consensus 209 ~~p~~~~il~e~isk-EPl-g~avr~gD-~~w~d~V~W~~~ali~Aee~git~~nv~~~ 264 (342) ...+...+....+.. -|- ..++++.= .+=.+.|+-.+.|++.|.++=-..+|-++. T Consensus 221 ~g~g~~~~~~~di~~~~p~~vl~~~~~~~~~nPe~v~afv~Al~~A~~w~~~~~n~~ea 279 (417) T 2g29_A 221 QGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQAENKEEM 279 (417) T ss_dssp HTSCEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHCGGGHHHH T ss_pred CCCCEEEEECHHHCCCCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 48858985104632898636999648988539899999999999999998376599999 No 43 >2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A Probab=97.94 E-value=6.3e-05 Score=50.14 Aligned_cols=149 Identities=13% Similarity=-0.008 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC-------------- Q ss_conf 99999999996798220259981----431002677439627998124325320110278435322-------------- Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT-------------- 122 (342) Q Consensus 61 VDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~-------------- 122 (342) -.+++.|.++-.|. .+|++.|. ...+.+.+++.|.+|+..........+.....+...++. T Consensus 52 ~~fa~~V~e~T~G~-v~i~~~~~g~Lg~~~e~~e~v~~G~vd~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~ 130 (365) T 2hzl_A 52 EVLSKMLSEATDGN-FQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALAAAVPFSLSARGINAWHYHG 130 (365) T ss_dssp HHHHHHHHHHTTTS-SEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHTTCCTTCCCHHHHHHHHHHS T ss_pred HHHHHHHHHHCCCE-EEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHC T ss_conf 99999999975991-99999618643640658999976997531210112467774045641156768989999998613 Q ss_pred --------------------CCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHH Q ss_conf --------------------344023463021134753641786203431342699999999862998507874798999 Q gi|254780170|r 123 --------------------YFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEI 182 (342) Q Consensus 123 --------------------~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a 182 (342) +..|..........|++++||+|++|-+. |. ..+.++.-| +.++.. ...|. T Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~pi~~~~DlkG~kiR~~-~~-----~~~~~~alG--a~pv~~-~~~Ev 201 (365) T 2hzl_A 131 GGIDLYNEFLSQHNIVAFPGGNTGVQMGGWFRREINTVADMQGLKMRVG-GF-----AGKVMERLG--VVPQQI-AGGDI 201 (365) T ss_dssp SHHHHHHHHHGGGTEEEEEEEECCSBCCCEESSCCCSTGGGTTCEEECC-TT-----HHHHHHTTT--CEEECC-CTTSH T ss_pred CHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHHCCCEECCC-CH-----HHHHHHHCC--CEEEEC-CCCHH T ss_conf 1177888878760717999735885045665988667688449873048-46-----899999749--724413-75027 Q ss_pred HHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC Q ss_conf 99987396029982504799999836780010025644 Q gi|254780170|r 183 DAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI 220 (342) Q Consensus 183 ~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~ 220 (342) +.+|++|-+|+................. ..+.+++.. T Consensus 202 y~ALqtGvVDg~~~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (365) T 2hzl_A 202 YPALEKGTIDATEWVGPYDDEKLGFFKV-APYYYYPGW 238 (365) T ss_dssp HHHHHHTSCSEECCSCHHHHHHHTGGGT-CCEEEECBT T ss_pred HHHHHHCCEEEEECCCHHHHHHHCCHHE-EEEEECCCC T ss_conf 7898718521576266557887055121-468850786 No 44 >2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1 Probab=97.90 E-value=8.4e-06 Score=55.68 Aligned_cols=197 Identities=13% Similarity=0.013 Sum_probs=96.4 Q ss_pred EEEEEEECC--CCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 499987178--988306889898801509999999999679822025998143100267743962799812432532011 Q gi|254780170|r 35 FLKCGINTG--LVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 35 ~L~vGv~~~--~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) .||||.-+- ..|+.+ ++++ ++-...++++..++.+...+|.+|++|+..-+.. ..-+.. T Consensus 8 ~lRvG~i~~~~~~Pl~~----------------a~e~--~~~~~~~~~~~~~p~~l~~al~sG~iDi~~~~~~-~~~~~~ 68 (291) T 2nxo_A 8 RPRVGHIQFLNCLPLYW----------------GLAR--TGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLV-EFLKNA 68 (291) T ss_dssp CCEEEEECSGGGHHHHH----------------HHHH--TSGGGGCEEEEECHHHHHHHHHTTSCSEEEEEHH-HHHHTG T ss_pred CCEEEEECCCCCHHHHH----------------HHHH--CCCCCCEEEEECCHHHHHHHHHCCCCCEEECCHH-HHHHHC T ss_conf 84779875345345999----------------9982--6888766998689999999998699889964299-998614 Q ss_pred CCCCCCCCCC-CCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHH-HHHHHC-CCCCCEEEECCHHHHHHHHHCC Q ss_conf 0278435322-344023463021134753641786203431342699999-999862-9985078747989999998739 Q gi|254780170|r 113 SLGLAFRPIT-YFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLA-DYFKAH-NMKYHPIVFERVEEIDAAYRAH 189 (342) Q Consensus 113 ~~~v~Fs~~~-~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~-~~~~~~-~~~~~~v~~~~~~~a~~al~~G 189 (342) .......... ...|. +.+....++++++||.||+|++..+|++...+. .+++++ +...+.+.... .....+...+ T Consensus 69 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~dLkGkkVav~~~ss~~~~l~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~ 146 (291) T 2nxo_A 69 DDLVAFPDIAVGCDGP-VMSCVIVSQVPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYYTCPP-DLSLMMQEAD 146 (291) T ss_dssp GGEEEEEEEEEEESSC-CSSEEEEESSCTTSCSSSEEEEETTCSHHHHHHHHHHHHTSCCCCEEEEECC-CSSCC----- T ss_pred CCCEEEEEEEECCCCC-CEEEEEECCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHCCC T ss_conf 7544756654504688-5578973678978968985998089859999999999855999807986787-3688973689 Q ss_pred CEEEEEECCHHHHHHHHHCCCCHHHCCCC--CC---CCCC--CEEEE-CCC-CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 60299825047999998367800100256--44---4237--10100-027-77579999887744331121233 Q gi|254780170|r 190 RCDAYTGDISALYALKLTNDRPSEHVILP--DI---ISKS--PLAPA-IIQ-GDTEWYNIVSWTHYAMVTAEELG 255 (342) Q Consensus 190 r~DA~~~D~s~La~~~~~~~~p~~~~il~--e~---iskE--Plg~a-vr~-gD~~w~d~V~W~~~ali~Aee~g 255 (342) ..+++... .+....... ...-..+.. +. .+.. |.+.. ++. -..+-.++++..+.++.+|-++. T Consensus 147 ~~~~i~~~--~~~~~~~~~-~~~~~~i~d~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~al~~a~~~~ 218 (291) T 2nxo_A 147 AAVLIGDA--ALRANMIDG-PRYGLDVHDLGALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAFLASRNLS 218 (291) T ss_dssp CCEEEHHH--HHHHHHTHH-HHTTCEEEEHHHHHHHHHSCCEEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHH T ss_pred CEEEEECC--CHHHHHHHC-CCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 61798344--203898740-5786899884786745228986300011133322227899999999999999988 No 45 >3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic binding protein, trap, sugar transport, transport, transport protein; HET: SLB; 1.40A {Haemophilus influenzae} PDB: 2v4c_A* 2cey_A 2cex_A Probab=97.81 E-value=0.00035 Score=45.38 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=95.4 Q ss_pred HHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC--------------- Q ss_conf 99999999967982202599814----31002677439627998124325320110278435322--------------- Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLN----AKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT--------------- 122 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~----~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~--------------- 122 (342) .+++.|.++..|. .+|++-|-. ..+.+.+|++|.+|+.....+....+.-..++ |..|+ T Consensus 23 ~fa~~V~e~t~G~-v~v~v~~~g~Lg~~~e~~~av~~G~vd~~~~~~~~~~~~~p~~~~-~~lP~~~~~~~~~~~~~~~~ 100 (310) T 3b50_A 23 MFAKEVKEKSQGK-IEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAV-FALPYVISNYNVAQKALFDT 100 (310) T ss_dssp HHHHHHHHHTTTS-EEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGG-GGSTTTSCSHHHHHHHHHSS T ss_pred HHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCCHHHH-CCCCCCCCCHHHHHHHHHCC T ss_conf 9999999976994-999996698748879999999779957897533332445803442-15765679879888887511 Q ss_pred ---------------------CCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHH Q ss_conf ---------------------34402346302113475364178620343134269999999986299850787479899 Q gi|254780170|r 123 ---------------------YFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEE 181 (342) Q Consensus 123 ---------------------~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~ 181 (342) +..|...+. .+..|++++||+|+||-+..+... .++++.-|. +++.. ...+ T Consensus 101 ~~~~~~~~~~~~~~~v~~l~~~~~g~~~~~-~~~pi~s~~DlkG~kiRv~~~~~~----~~~~~~lGa--~pv~~-~~~e 172 (310) T 3b50_A 101 EFGKDLIKKMDKDLGVTLLSQAYNGTRQTT-SNRAINSIADMKGLKLRVPNAATN----LAYAKYVGA--SPTPM-AFSE 172 (310) T ss_dssp HHHHHHHHHHHHHHCEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHHH----HHHHHHTTC--EEEEC-CGGG T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCCC-CCCCCCCHHHHCCCEEECCCCCHH----HHHHHHCCC--EEEEE-CCCC T ss_conf 889999999987569368763157621146-798999968967884643686054----679997397--53673-5641 Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC Q ss_conf 9999873960299825047999998367800100256444237101000 Q gi|254780170|r 182 IDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI 230 (342) Q Consensus 182 a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av 230 (342) .+.+|++|.+|+..+..+...+.+ +....+|..... ...-+..+++ T Consensus 173 vy~aLq~G~vDg~~~~~~~~~~~~--~~ev~~y~~~~~-~~~~~~~~~~ 218 (310) T 3b50_A 173 VYLALQTNAVDGQENPLAAVQAQK--FYEVQKFLAMTN-HILNDQLYLV 218 (310) T ss_dssp HHHHHHTTSSSEEEEEHHHHHHTT--GGGSCSEEECCC-CCEEEEEEEE T ss_pred HHHHHHCCCCCCCCCCCHHHHHCC--CEEEEEEEECCC-CCCEEHHEEE T ss_conf 568987598653327610012033--125546763277-5210001013 No 46 >2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Probab=97.75 E-value=0.0019 Score=40.69 Aligned_cols=233 Identities=12% Similarity=0.070 Sum_probs=120.7 Q ss_pred EEHHHHHHHHHHHH---CCCCCEEEEEECCCCCC-HHHHHCCCEE---EEEECC-CCC-CC--CHH-CCC-CCCCCCC-- Q ss_conf 15099999999996---79822025998143100-2677439627---998124-325-32--011-027-8435322-- Q gi|254780170|r 58 GFDVDFCRALSSAI---FDDPSKIQYLPLNAKER-FLALQSKQID---ILSRNT-DWT-LL--REI-SLG-LAFRPIT-- 122 (342) Q Consensus 58 GfDVDl~raiAaal---~gd~~kVe~v~~~~~~r-f~aL~sG~vD---il~~~~-T~T-~~--Rd~-~~~-v~Fs~~~-- 122 (342) |.|+ ++|.+|..+ +|.+..|+.+|-..... ...+...+-| +++.+. ..+ .. +.. ... -+|.+.- T Consensus 30 g~D~-~aR~~a~~l~k~lg~~v~V~N~pGagG~~g~~~~~~~~~Dg~t~~~~~~~~~~~~~l~~~~~~~~~~df~~i~~~ 108 (312) T 2f5x_A 30 PTDN-VARSLAESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLV 108 (312) T ss_dssp HHHH-HHHHHHHHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTTSEEEEEEE T ss_pred HHHH-HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCE T ss_conf 8999-999999999998699879997898215999999995699998156521553445200157888848863300100 Q ss_pred CCCCEEEEEECCCCCCCHHHHC------C--CCEEE-EECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE Q ss_conf 3440234630211347536417------8--62034-3134269999999986299850787479899999987396029 Q gi|254780170|r 123 YFDGQGFIMHKKKGISSVSQLS------G--ASICV-QAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA 193 (342) Q Consensus 123 ~~dgq~~lVrk~~~i~s~~dL~------G--~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA 193 (342) ..+...++|++++++++++||- . .+++. -.|+........+.+..+.+++.|.|++..+++.++..|++|+ T Consensus 109 ~~~~~~~~v~~~s~~~t~~dli~~ak~~p~~v~~g~~g~gs~~~~~~~~~~~~~G~~~~~V~y~G~~~~~~al~~G~vd~ 188 (312) T 2f5x_A 109 VDVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDL 188 (312) T ss_dssp EEEEEEEEECTTCSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCE T ss_pred ECCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCC T ss_conf 04756898679884033789999873387761464378994889999899986398444135677177777753683131 Q ss_pred EEECCHHHHHHHHHCC-------CCHHHCCCCCC-----------CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9825047999998367-------80010025644-----------42371010002777579999887744331121233 Q gi|254780170|r 194 YTGDISALYALKLTND-------RPSEHVILPDI-----------ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELG 255 (342) Q Consensus 194 ~~~D~s~La~~~~~~~-------~p~~~~il~e~-----------iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~g 255 (342) .+...+........-. .+.....+|+. ...-..++++++|-++ ++|.|...++- T Consensus 189 ~~~~~~~~~~~~~~g~l~~La~~~~~r~~~~pdvPT~~E~G~~~~~~~~~~g~~ap~gtp~--~~v~~l~~a~~------ 260 (312) T 2f5x_A 189 MCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPK--PVVDKLVKSLQ------ 260 (312) T ss_dssp EEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCH--HHHHHHHHHHH------ T ss_pred CCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCCH--HHHHHHHHHHH------ T ss_conf 2357300144553467549998277655436899980652788750355202532677999--99999999999------ Q ss_pred CCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCC-HHHHHHHHHHCCCHHHHHH Q ss_conf 0152089886226717788762358876503337998-6799999997186999878 Q gi|254780170|r 256 ITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLT-KDWTYRIIRHMGNYGEMFD 311 (342) Q Consensus 256 it~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~-~~~~~~~i~~vGNYgei~~ 311 (342) ++ ..||+.+..|--.+ -+.- .-.++ .++...+-.+.-.|+++.. T Consensus 261 -------~~---~~~pe~~~~~~~~g-~~~~-~~~~~~~~~~~~i~~~~~~~~~lik 305 (312) T 2f5x_A 261 -------AG---LADPKFQERMKQLG-AEVL-TNEANPEALQAKVKQQVPQWAELFK 305 (312) T ss_dssp -------HH---HTCHHHHHHHHHTT-CEEC-GGGCSHHHHHHHHHHHHHHHHHHHH T ss_pred -------HH---HCCHHHHHHHHHCC-CCCC-CCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf -------99---73999999999769-9614-7889999999999999999999999 No 47 >2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A Probab=97.61 E-value=0.00031 Score=45.73 Aligned_cols=149 Identities=16% Similarity=0.071 Sum_probs=89.2 Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCC Q ss_conf 4999871789883068898988015099999999996798220259981----431002677439627998124325320 Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLR 110 (342) Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342) +|+++.. +|+- + .+.-..-.+++.|.++..|. .+|++.|- ...+.+.+++.|.+|+....+.....+ T Consensus 35 tlk~~~~--~p~~-----~-~~~~~~~~f~~~V~e~t~G~-i~i~~~~~g~Lg~~~e~~~~v~~G~~d~~~~~~~~~~~~ 105 (361) T 2zzv_A 35 RWRIQTA--WDAG-----T-VGYSLFQKFTERVKELTDGQ-LEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGR 105 (361) T ss_dssp EEEEEES--SCTT-----S-HHHHHHHHHHHHHHHHTTTS-EEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTT T ss_pred EEEEECC--CCCC-----C-HHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 9999837--8998-----7-65799999999999976990-899995586657679999999759875254202224676 Q ss_pred HHCCCCCCCCCCC-----------------------------------CCCEEEEEECCCCCCCHHHHCCCCEEEEECCC Q ss_conf 1102784353223-----------------------------------44023463021134753641786203431342 Q gi|254780170|r 111 EISLGLAFRPITY-----------------------------------FDGQGFIMHKKKGISSVSQLSGASICVQAGTT 155 (342) Q Consensus 111 d~~~~v~Fs~~~~-----------------------------------~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT 155 (342) .-...+...++++ ..|...+ ..+..|++++||+|++|-+..+ . T Consensus 106 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~s~kpi~s~~DlkG~kiR~~~~-~ 183 (361) T 2zzv_A 106 MPVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVGPVQHDLNII-HSKKPIRRFEDFKGVKLRVPGG-M 183 (361) T ss_dssp CGGGGGSSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEEEECCCCCCE-EESSCCCSGGGGTTCEEECCSH-H T ss_pred CCHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCEEEEEEECCCCCEEE-ECCCCCCCCCCCCCCEEEECCC-H T ss_conf 6077772353124776999999871313678998875246299984047875034-2488765730137957993583-6 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHH Q ss_conf 6999999998629985078747989999998739602998250479 Q gi|254780170|r 156 TELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISAL 201 (342) Q Consensus 156 ~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~L 201 (342) ..+.++..|. .++.. ...|.+.++++|.+|+...-.... T Consensus 184 ----~~~~~~~lGa--~pv~i-~~~ev~~ALq~G~vDg~~~~~~~~ 222 (361) T 2zzv_A 184 ----IAEVFAAAGA--STVLL-PGGEVYPALERGVIDAADFVGPAV 222 (361) T ss_dssp ----HHHHHHHTTC--EEECC-CGGGHHHHHHTTSCSEEECSCHHH T ss_pred ----HHHHHHHCCC--CCEEC-CCHHHHHHHHHCCCCEEECCCHHH T ss_conf ----8999997699--51445-860467898745634021462655 No 48 >1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A* Probab=97.58 E-value=0.00063 Score=43.79 Aligned_cols=182 Identities=13% Similarity=0.048 Sum_probs=110.8 Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH-------------HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH Q ss_conf 02599814310026774396279981243253201-------------10278435322344023463021134753641 Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE-------------ISLGLAFRPITYFDGQGFIMHKKKGISSVSQL 143 (342) Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd-------------~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL 143 (342) .+++.-+-.++....+..|.+|+.+.+.-|-.|-. ....+.|... .-.+.+++++.+.++++| T Consensus 47 ~i~~~~~R~~DIp~~V~~G~~DlGItG~D~l~E~~~~~~~~~~~~~v~~~~~Lgfg~~----rlvvAvP~~~~~~~~~~l 122 (299) T 1h3d_A 47 PIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGC----RLSLATPVDEAWDGPLSL 122 (299) T ss_dssp SEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHHHHHHHHHTCCCCEEEEEECSCCCE----EEEEEEETTSCCCCGGGG T ss_pred CEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHCCCCCCEEEEEECCCCCE----EEEEEECCCCCCCCHHHH T ss_conf 8799998889999999749966010217877641232010167762588752355745----899970343464464561 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC Q ss_conf 78620343134269999999986299850787479899999987396029982504799999836780010025644423 Q gi|254780170|r 144 SGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISK 223 (342) Q Consensus 144 ~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk 223 (342) +|++|+ |.+....++||+++|++++++......|. +..-|-+|+++-=.+.=..+++ +..+++.+.+.. T Consensus 123 ~g~RIA----Tkyp~lt~~~~~~~gi~~~iv~~~GavE~--ap~~G~AD~IvDiv~TG~TLr~-----NgLk~i~~Il~S 191 (299) T 1h3d_A 123 NGKRIA----TSYPHLLKRYLDQKGISFKSCLLNGSVEV--APRAGLADAICDLVSTGATLEA-----NGLREVEVIYRS 191 (299) T ss_dssp TTCEEE----ESCHHHHHHHHHHHTCCCEEEECSSCTTH--HHHTTSCSEEEEEESSCHHHHH-----TTEEEEEEEEEE T ss_pred CCCEEE----EHHHHHHHHHHHHCCCEEEEEECCCCEEC--CCCCCCEEEEEEECCCHHHHHH-----CCCEECCEEEEE T ss_conf 784885----20145999999984980799325572111--6788850089997068577998-----799403348877 Q ss_pred CCEEEECCCC-CH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH Q ss_conf 7101000277-75---799998877443311212330152089886226717788762 Q gi|254780170|r 224 SPLAPAIIQG-DT---EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342) Q Consensus 224 EPlg~avr~g-D~---~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342) +..=++=++. ++ ++.+-.---+.+-+.|..+=.-.-|+. .+.-.++..+| T Consensus 192 ~a~LI~n~~~~~~~k~~~i~~l~~rl~gvl~Ar~~~~i~~n~p----~~~l~~v~~~l 245 (299) T 1h3d_A 192 KACLIQRDGEMEESKQQLIDKLLTRIQGVIQARESKYIMMHAP----TERLDEVIALL 245 (299) T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCC----TTTHHHHHHHS T ss_pred EEEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECC----HHHHHHHHHHC T ss_conf 9999992502010079999999999999996644889999787----77799999847 No 49 >2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Probab=97.50 E-value=0.00063 Score=43.81 Aligned_cols=156 Identities=11% Similarity=-0.036 Sum_probs=97.3 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCC----------- Q ss_conf 99999999996798220259981----431002677439627998124325320110278435322344----------- Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFD----------- 125 (342) Q Consensus 61 VDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~d----------- 125 (342) -.+++.|.++..|+ .+|++.+. ...+.+.+|++|.+|+.....+....+.-...+ |..|++++ T Consensus 21 ~~fa~~V~~~t~G~-v~i~~~~~g~L~~~~e~~~~v~~G~vd~~~~~~~~~~~~~P~~~~-~~lP~l~~~~~~~~~~~~~ 98 (301) T 2pfy_A 21 RQFADEVKAATAGA-LEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEI-DSVPFLASSFNESEKLWKA 98 (301) T ss_dssp HHHHHHHHHHTTTS-EEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGG-GGSTTTSCSHHHHHHHHHH T ss_pred HHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCCCEECHHHHHCCCCCHHC-CCCCCCCCCHHHHHHHHHH T ss_conf 99999999875990-899995687658879999999769877522104665224730102-5676354779999987744 Q ss_pred ----------------------CEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHH Q ss_conf ----------------------0234630211347536417862034313426999999998629985078747989999 Q gi|254780170|r 126 ----------------------GQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEID 183 (342) Q Consensus 126 ----------------------gq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~ 183 (342) +...+. .+..|.+++||+|+||-+. |+.. .++++.-| +.++..+ ..|.+ T Consensus 99 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~-~~~pi~s~~DlkG~kiR~~-~~~~----~~~~~~lG--a~pv~~~-~~evy 169 (301) T 2pfy_A 99 TRPLLAQRLDKQGIVLVYGSPWPPQGIY-TKKPVAALADLKGTRFRAY-SAST----SHMAALMG--AVPTTVQ-TPEVP 169 (301) T ss_dssp HHHHHHHHHHTTTEEEEEEEECCCCEEE-ESSCCSSGGGGTTCEEEEC-SHHH----HHHHHHTT--SEEEECC-GGGHH T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCEEE-ECCCCCCHHHHCCCEEECC-CHHH----HHHHHHCC--CCCCCCC-CCCHH T ss_conf 4689999997359079775167761367-5799899689769867347-4569----99999758--8510244-42014 Q ss_pred HHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC Q ss_conf 99873960299825047999998367800100256444237101000 Q gi|254780170|r 184 AAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI 230 (342) Q Consensus 184 ~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av 230 (342) .+|++|.+|+..+..+.+...+.. .-.+|.+.. .....+..+++ T Consensus 170 ~aLq~G~vDg~~~~~~~~~~~~~~--ev~~~~~~~-~~~~~~~~~~~ 213 (301) T 2pfy_A 170 QAFSTGVIDAMLTSPATGVDSQAW--DYVKYYYDA-QAFIPQSFVIA 213 (301) T ss_dssp HHHHTTSCSBEEECHHHHHHTTGG--GTCCEEEEC-CCCCCEEEEEE T ss_pred HHHHCCCEECCCCCCCCCCCCCCC--EEEEEEECC-CCCHHHHHHHH T ss_conf 677658410342473000123342--144577338-85204889998 No 50 >2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Probab=97.49 E-value=0.0021 Score=40.43 Aligned_cols=157 Identities=16% Similarity=0.018 Sum_probs=95.6 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCC---------- Q ss_conf 099999999996798220259981----431002677439627998124325320110278435322344---------- Q gi|254780170|r 60 DVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFD---------- 125 (342) Q Consensus 60 DVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~d---------- 125 (342) --++++.|.++-.|. .+|++.+. ...+.+.++++|.+|+..........+.....+ |..|++++ T Consensus 19 ~~~fa~~V~e~t~G~-v~i~i~~~g~L~~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~~-~~lPf~~~~~~~~~~~~~ 96 (301) T 2pfz_A 19 LTQFVKDVDSLSGGK-LKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYEL-DGLPFLATGYDASFKLYQ 96 (301) T ss_dssp HHHHHHHHHHHHTTS-CEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTG-GGSTTSCCSHHHHHHHHH T ss_pred HHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEE-EECCCCCCCHHHHHHHHH T ss_conf 999999999875991-999996698678869999999769877100022464541754036-635767687688999863 Q ss_pred -----------------------CEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHH Q ss_conf -----------------------023463021134753641786203431342699999999862998507874798999 Q gi|254780170|r 126 -----------------------GQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEI 182 (342) Q Consensus 126 -----------------------gq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a 182 (342) +...+. ....|++++||+|+||-+. |.+ ..++++.-| ..++..+ ..+. T Consensus 97 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~pi~~~~DlkG~kiR~~-~~~----~~~~~~~~G--a~pv~~~-~~ev 167 (301) T 2pfz_A 97 AQKPFLEKKLASQGMMLLYSVAWPPQGIF-ANRDIKQVSDMKGLKWRAY-SPV----TAKIAELVG--AQPVTVQ-QAEL 167 (301) T ss_dssp HHHHHHHHHHHTTTEEEEEEEECCCCEEE-ESSCCSSGGGGTTCEEEES-SHH----HHHHHHHHT--CEEEECC-GGGH T ss_pred HHHHHHHHHHHHCCEEEEEECCCCCEEEE-CCCCCCCHHHHCCCEEEEC-CHH----HHHHHHHCC--CCCCCCC-CHHH T ss_conf 04899998764232579875277622224-2889999588679858716-824----999999818--8744565-4068 Q ss_pred HHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC Q ss_conf 999873960299825047999998367800100256444237101000 Q gi|254780170|r 183 DAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI 230 (342) Q Consensus 183 ~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av 230 (342) +.+|++|.+|+..+..+.....+. ..-..|..... ..-.+..+++ T Consensus 168 ~~aLq~G~vDg~~~~~~~~~~~~~--~e~~~~~~~~~-~~~~~~~~~~ 212 (301) T 2pfz_A 168 AQAMATGVIDSYMSSGSTGFDTKT--YEYIKKFYDTE-AWLPKNAVLV 212 (301) T ss_dssp HHHHHTTSCSEEEECHHHHHHTTG--GGTCCEEECCC-CCCCEEEEEE T ss_pred HHHHHHCCCHHHCCCHHHHHHCCC--CEEEEEEEECC-CCCCHHHHHC T ss_conf 999982531020057044431156--14420487358-7464144350 No 51 >2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP} Probab=97.37 E-value=0.0077 Score=36.93 Aligned_cols=181 Identities=9% Similarity=-0.025 Sum_probs=112.5 Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342) -+|.|++|+.+..... +-.++.+.+.+.- ...++++...++.+....|.+|++|+.+.... .. T Consensus 3 ~~G~lrIg~~~~~~~~-----------~l~~~l~~f~~~~--P~v~l~i~~~~~~~l~~~l~~g~~Dl~i~~~~---~~- 65 (209) T 2ql3_A 3 VAGPIAVGCYPALGPT-----------ILPSMLYAFTAEY--PRASVEFREDTQNRLRTQLEGGELDVAIVYDL---DL- 65 (209) T ss_dssp CCEEEEEEECGGGTTT-----------THHHHHHHHHHHC--TTEEEEEEECCHHHHHHHHHTTSCSEEEEESS---SC- T ss_pred CCEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCEEEEEECC---CC- T ss_conf 4289999968899999-----------9999999999988--79389999898289998760798358853046---54- Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC------CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH Q ss_conf 102784353223440234630211------347536417862034313426999999998629985078-7479899999 Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKK------GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342) Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~------~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342) ...+.+. +.+.+...++++++. +.-++++|.+.......+......+.+++.+.+...+++ .+++...+.. T Consensus 66 -~~~~~~~-~~~~~~~~~v~~~~~~la~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (209) T 2ql3_A 66 -SPEWQTV-PLMTREPMVVLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARA 143 (209) T ss_dssp -CTTEEEE-EEEEECCEEEEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHH T ss_pred -CCCHHEE-CCCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHH T ss_conf -2000000-01211222224689834517996679988339856328995188999999974999506998263777899 Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCC-CCCCEEEECCCCCH Q ss_conf 9873960299825047999998367800100256--444-23710100027775 Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DII-SKSPLAPAIIQGDT 235 (342) Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~i-skEPlg~avr~gD~ 235 (342) ...+|..=+++.+..... ...+.....+.| +.. ..-++..+.|++.. T Consensus 144 lv~~g~Gi~~lp~~~~~~----~~~~~~~~~~~pl~~~~~~~~~i~l~~~~~~~ 193 (209) T 2ql3_A 144 FVGRGLGWTLLLQRPRVD----VTYEGLPVVVKPIAEPKPASVAVVVAWHQEAT 193 (209) T ss_dssp HHHHTSCBEEESCCCSSC----BCTTSCBEEEEEBCSSCCCCEEEEEEEETTCC T ss_pred HHHCCCEEEEEEHHHHHH----HHHCCCCEEEEECCCCCCCEEEEEEEECCCCC T ss_conf 998199599902688877----86479978999778888744799999919897 No 52 >2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Probab=97.36 E-value=0.00052 Score=44.34 Aligned_cols=141 Identities=9% Similarity=0.031 Sum_probs=83.6 Q ss_pred HHHHHHHHH---CCCCCEEEEEECCCCC-CHHHHHCCC---EEEEEECC-CCCC---CCHHCCC----CCCCCCCC--CC Q ss_conf 999999996---7982202599814310-026774396---27998124-3253---2011027----84353223--44 Q gi|254780170|r 63 FCRALSSAI---FDDPSKIQYLPLNAKE-RFLALQSKQ---IDILSRNT-DWTL---LREISLG----LAFRPITY--FD 125 (342) Q Consensus 63 l~raiAaal---~gd~~kVe~v~~~~~~-rf~aL~sG~---vDil~~~~-T~T~---~Rd~~~~----v~Fs~~~~--~d 125 (342) ++|.+|..+ +|.+..|+.+|-.... -...+.+.+ .-+++.+. +++. -+..... -||.+.-. .+ T Consensus 36 ~aR~~a~~l~k~~g~~v~V~N~pGagG~~g~~~~~~~~~Dg~ti~~~~~~~~~~~~~~~~~~~~~d~~~d~~~v~~~~~~ 115 (314) T 2dvz_A 36 IARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANT 115 (314) T ss_dssp HHHHHHHHHHHHHTSCEEEEECCCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCTTTSEEEEEEEEEE T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHEEECC T ss_conf 99999999999869987999669827899999998569999847761240544334541357898768875554202204 Q ss_pred CEEEEEECCCCCCCHHHHC------C--CCEEEE-ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEE Q ss_conf 0234630211347536417------8--620343-134269999999986299850787479899999987396029982 Q gi|254780170|r 126 GQGFIMHKKKGISSVSQLS------G--ASICVQ-AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTG 196 (342) Q Consensus 126 gq~~lVrk~~~i~s~~dL~------G--~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~ 196 (342) ...++|++++++++++||- . .+++.. .|+........+.+..+++++.|+|++..++++++.+|+||+.+. T Consensus 116 ~~v~~v~~~s~~~t~~e~i~~ak~~p~~l~~g~~~~gs~~~~~~~~l~~~~G~~~~~Vpy~g~~~~~~all~G~vd~~~~ 195 (314) T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFD 195 (314) T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEE T ss_pred CEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEEEC T ss_conf 30343167777567899999986399845762046642245679999998599759940488424468886794789851 Q ss_pred CCHHHHH Q ss_conf 5047999 Q gi|254780170|r 197 DISALYA 203 (342) Q Consensus 197 D~s~La~ 203 (342) ..+.... T Consensus 196 ~~~~~~~ 202 (314) T 2dvz_A 196 NLPSSMP 202 (314) T ss_dssp EHHHHHH T ss_pred CCHHHHH T ss_conf 3211111 No 53 >3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, membrane, transport protein; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3} Probab=97.31 E-value=0.0013 Score=41.77 Aligned_cols=181 Identities=14% Similarity=0.165 Sum_probs=104.8 Q ss_pred HHHHHHHCCEEEEEEECCCCCCEEECCCCCEEE-EHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEE Q ss_conf 689998579499987178988306889898801-5099999999996798220259981----43100267743962799 Q gi|254780170|r 26 ILGDIKKRGFLKCGINTGLVGFAEVKANGDWKG-FDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDIL 100 (342) Q Consensus 26 tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~G-fDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil 100 (342) -.++++.+-++|.+... | .|.+.| +--.+++.|.++-.| +|++-|. ...+.+.++++|.+|+. T Consensus 7 ~~~~~~~~~t~~~a~~~--~-------~~~~~~~~~~~fa~~Vee~t~G---~I~i~p~g~Lg~~~e~~~~v~~G~id~~ 74 (326) T 3fxb_A 7 QFEKIEGRDTWRYAFEE--A-------MTDVQGVYAQKFKEEIEANSDH---EIQLFPYGTLGESADIMEQTQDGILQFV 74 (326) T ss_dssp --------CCCEEECSS--C-------TTSHHHHHHHHHHHHHHHSSSC---CCEEECTTSSCSHHHHHHHHHHTSCSEE T ss_pred HHHHHCCCCEEEEECCC--C-------CCCHHHHHHHHHHHHHHHHCCC---EEEEEECCCCCCHHHHHHHHHCCCCCEE T ss_conf 03341625579996789--9-------9987899999999999976598---7999879836887999999976985289 Q ss_pred EECCCCCCCCHHCCCCCCCCCCCC-------------------------------------CCEEEEEECCCCCCCHHHH Q ss_conf 812432532011027843532234-------------------------------------4023463021134753641 Q gi|254780170|r 101 SRNTDWTLLREISLGLAFRPITYF-------------------------------------DGQGFIMHKKKGISSVSQL 143 (342) Q Consensus 101 ~~~~T~T~~Rd~~~~v~Fs~~~~~-------------------------------------dgq~~lVrk~~~i~s~~dL 143 (342) ....+......-...+ |..|+.+ .|...+. .+..|++++|| T Consensus 75 ~~~~~~~~~~~p~~~i-~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~g~~~~~-s~kpi~s~~Dl 152 (326) T 3fxb_A 75 DQSPGFTGSLIPEAQV-FFVPYLLPTDQDHLARFFKESKAINDMFKPLYADQGLELLNMFPEGEVAMT-TKTPVTTCSDL 152 (326) T ss_dssp ECCHHHHTTTSGGGGG-GGSTTCSCSCHHHHHHHHHHCHHHHTTSHHHHHTTTEEEEEEEEEEEEEEE-ESSCCSSGGGS T ss_pred EECCCHHCCCCCHHHH-HCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEE-CCCCCCCHHHH T ss_conf 7514001224614665-307645773099999985136999999999988619714322103624664-69899997997 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC Q ss_conf 78620343134269999999986299850787479899999987396029982504799999836780010025644423 Q gi|254780170|r 144 SGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISK 223 (342) Q Consensus 144 ~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk 223 (342) +|+||-+..+.. ..++++.-|. +++.. ...|.+.+|++|.+|++.+-.+.+.+.+ +..-.+|.+... +.. T Consensus 153 kG~kiR~~~s~~----~~~~~~~~Ga--~pv~i-~~~Ev~~aLq~G~vDg~~~~~~~~~~~~--~~ev~~y~t~~~-~~~ 222 (326) T 3fxb_A 153 DEVKFRVMTNPL----LVESYKAFGA--TPTPL-PWGEVYGGLQTNVIQGQENPTFFLYSTK--IYEVTDYITYAG-HNN 222 (326) T ss_dssp TTCEEEECSCHH----HHHHHHHHTS--EEEEC-CGGGHHHHHHTTSCCEEEEEHHHHHHTT--GGGSCSEEEECC-CCE T ss_pred CCCCEECCCCCH----HHHHHHHCCC--CCCCC-CCCCHHHHHHCCCCCEEECCCHHHCCCC--CCCCCCEEEECC-CCC T ss_conf 687120048606----8999997599--75256-5100447986688661322612212434--323034587346-423 Q ss_pred CCEEEEC Q ss_conf 7101000 Q gi|254780170|r 224 SPLAPAI 230 (342) Q Consensus 224 EPlg~av 230 (342) -+..+++ T Consensus 223 ~~~~~~~ 229 (326) T 3fxb_A 223 FTTAVMA 229 (326) T ss_dssp EEEEEEE T ss_pred CCEEEEE T ss_conf 2001476 No 54 >2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} Probab=97.26 E-value=0.0035 Score=39.05 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=99.0 Q ss_pred EEEEEEECCCCCCEEECCCCCEEE-EHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCC Q ss_conf 499987178988306889898801-5099999999996798220259981----43100267743962799812432532 Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKG-FDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLL 109 (342) Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~G-fDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~ 109 (342) +||.+. .+|| |.+.+ -...+++.|.++-.|. .+|++.+. ...+.+.++++|.+|+...+...-.. T Consensus 10 tlk~~~--~~p~-------~~~~~~~~~~fa~~v~e~s~G~-v~i~v~~~g~Lg~~~e~~~~v~~G~vd~~~~~~~~~~~ 79 (327) T 2hpg_A 10 TLRFGH--VLAP-------GEPYHQAFLKWAKAVEEKTNGD-VRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGM 79 (327) T ss_dssp EEEEEC--CCST-------TSHHHHHHHHHHHHHHHHTTTS-EEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTT T ss_pred EEEEEC--CCCC-------CCHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHH T ss_conf 999978--8899-------8989999999999999876992-99999668766887999999976997067324301212 Q ss_pred CHHC--------------------------------------------CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCC Q ss_conf 0110--------------------------------------------27843532234402346302113475364178 Q gi|254780170|r 110 REIS--------------------------------------------LGLAFRPITYFDGQGFIMHKKKGISSVSQLSG 145 (342) Q Consensus 110 Rd~~--------------------------------------------~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G 145 (342) .... .++-+-..++..+..++.. +..|++++||+| T Consensus 80 ~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~-~~pi~s~~DlkG 158 (327) T 2hpg_A 80 YVKDIGVMNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRHFVT-NKPIRKPEDLNG 158 (327) T ss_dssp TSGGGGGGGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEE-SSCCSSGGGGTT T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC-CCCCCCHHHHCC T ss_conf 5666320234200466555888999999999864989999999998862984231212576056765-888899799779 Q ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCC Q ss_conf 62034313426999999998629985078747989999998739602998250479999983678001002564442371 Q gi|254780170|r 146 ASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSP 225 (342) Q Consensus 146 ~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEP 225 (342) +||-+. |+.. ..++++.-|. ++|.. ...|.+.+|++|.+|+..+-.+.+...+ +..--+|.+.+. ...-+ T Consensus 159 ~kiR~~-g~~~---~~~~~~~~Ga--~pv~~-~~~ev~~aLqtG~iDg~~~~~~~~~~~~--~~e~~~~~t~~~-~~~~~ 228 (327) T 2hpg_A 159 LRIRTP-GAPA---WQESIRSLGA--IPVAV-NFGEIYTAVQTRAVDGAELTYANVYNGG--LYEVLKYMSETG-HFLLI 228 (327) T ss_dssp CEEECC-SSHH---HHHHHHHHTS--EEECC-CGGGHHHHHHTTSCSEEEECHHHHHHTT--GGGTCCEEEEEE-EEEEE T ss_pred CEEEEC-CCHH---HHHHHHHCCC--CCCCC-CCCCHHHHHHCCCEEEEEECCCCCCCCC--CEEEECEEECCC-CCCCH T ss_conf 859844-8747---8999997388--31046-7641667987586458972420001355--000204586289-75420 Q ss_pred EEEEC Q ss_conf 01000 Q gi|254780170|r 226 LAPAI 230 (342) Q Consensus 226 lg~av 230 (342) ...++ T Consensus 229 ~~~~~ 233 (327) T 2hpg_A 229 NFEIV 233 (327) T ss_dssp EEEEE T ss_pred HHHHH T ss_conf 58871 No 55 >2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A Probab=97.24 E-value=0.0014 Score=41.57 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=94.0 Q ss_pred CCCEEE-EHHHHHHHHHHHHCCCCCEEEEEE----CCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCC--- Q ss_conf 898801-509999999999679822025998----143100267743962799812432532011027843532234--- Q gi|254780170|r 53 NGDWKG-FDVDFCRALSSAIFDDPSKIQYLP----LNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYF--- 124 (342) Q Consensus 53 ~G~~~G-fDVDl~raiAaal~gd~~kVe~v~----~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~--- 124 (342) .|.+.+ +--.+++.|.++-.| +|++-| ....+.+.++++|.+|+.....+....+.-...+ |..|+++ T Consensus 11 ~g~~~~~~~~~fa~~v~e~t~G---~v~i~~~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~v-~~lP~~~~s~ 86 (316) T 2vpn_A 11 EGDVQDVFAQAFKGYVEDNSDH---TVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQI-FFIPYLMPTD 86 (316) T ss_dssp TTSHHHHHHHHHHHHHHHSSSC---EEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGG-GGSTTCSCSS T ss_pred CCCHHHHHHHHHHHHHHHHCCC---EEEEEECCEECCHHHHHHHHHCCCCCEEEECHHHHHHHCHHHHH-HHCCHHHHHH T ss_conf 9998899999999999986698---79999899127779999999779838898766665102512566-6162254669 Q ss_pred ----------------------------------CCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC Q ss_conf ----------------------------------4023463021134753641786203431342699999999862998 Q gi|254780170|r 125 ----------------------------------DGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMK 170 (342) Q Consensus 125 ----------------------------------dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~ 170 (342) .|...+. .+..|++++||+|+||-+..+.+. .++++..|. T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~L~~~~~g~~~~~-t~~pi~s~~DLkG~kiR~~~~~~~----~~~~~~lGa- 160 (316) T 2vpn_A 87 MDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPLL----AETYKAFGA- 160 (316) T ss_dssp HHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHHH----HHHHHHHTC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEE-CCCCCCCHHHHCCCEEEECCCCHH----HHHHHHCCC- T ss_conf 99999853005789999999998619677787147853553-698889978976880762488058----999997598- Q ss_pred CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECC Q ss_conf 5078747989999998739602998250479999983678001002564442371010002 Q gi|254780170|r 171 YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAII 231 (342) Q Consensus 171 ~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr 231 (342) .++.. ...+.+.+|++|.+|+..+..+.+.+. ++..--+|.+.+. +..-+..+++. T Consensus 161 -~pv~~-p~~evy~aLq~G~iDg~~~~~~~~~~~--~~~ev~~y~~~~~-~~~~~~~~~~n 216 (316) T 2vpn_A 161 -TPTPL-PWGEVYGGLQTGIIDGQENPIFWIESG--GLYEVSPNLTFTS-HGWFTTAMMAN 216 (316) T ss_dssp -EEEEC-CGGGHHHHHHHTSCSEEEEEHHHHHHT--TGGGTCCEEEECC-CCEEEEEEEEE T ss_pred -CCCCC-CCCCCCHHHHCCCEEEEECCCCCCCCC--CEEEEECCEECCC-CCCCHHHHHHH T ss_conf -43245-300123065358610475252100122--0011104413143-33433687743 No 56 >2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic solute-binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A Probab=97.17 E-value=0.0012 Score=42.05 Aligned_cols=215 Identities=12% Similarity=0.028 Sum_probs=111.1 Q ss_pred HCCEEEEEEEC--CCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCC----EEEEEECC Q ss_conf 57949998717--8988306889898801509999999999679822025998-14310026774396----27998124 Q gi|254780170|r 32 KRGFLKCGINT--GLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQ----IDILSRNT 104 (342) Q Consensus 32 ~rG~L~vGv~~--~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~----vDil~~~~ 104 (342) ++.+|++|.-+ +..|+-.-.++| +-++.+.| .|+++. .+|.+...+|.+|. +|...... T Consensus 34 Ek~~l~iG~iP~~d~aPl~VA~ekG------------fF~~~GLd--~V~l~~~~s~a~~~d~l~~G~~dg~lD~a~~la 99 (429) T 2i49_A 34 ETANIKLGYIPIVEAAPLIIAQEKG------------FFAKYGMT--GVEVSKQANWASARDNVTIGSQGGGIDGGQWQM 99 (429) T ss_dssp SCSEEEEEECSSGGGHHHHHHHHTT------------HHHHTTCC--EEEEEECSSHHHHHHHHHHTGGGTSCSEEEECT T ss_pred CCCEEEEEEEECHHHHHHHHHHHCC------------HHHHCCCC--EEEEEECCCHHHHHHHHHHCCCCCCCCEEECCC T ss_conf 7746999987744369999999779------------48875997--588995587799999998142257621564154 Q ss_pred CC----CCC-CHHCCCCCCCCC--CCCCCEEEEE--------------ECCCCCCCHHHHCCCCEEEE---ECCCHHHHH Q ss_conf 32----532-011027843532--2344023463--------------02113475364178620343---134269999 Q gi|254780170|r 105 DW----TLL-REISLGLAFRPI--TYFDGQGFIM--------------HKKKGISSVSQLSGASICVQ---AGTTTELTL 160 (342) Q Consensus 105 T~----T~~-Rd~~~~v~Fs~~--~~~dgq~~lV--------------rk~~~i~s~~dL~G~~I~v~---~GTT~e~~l 160 (342) .. +.. .....++.+..+ ....|+++.+ +.++.++++.+|+||++.+. .+|+++..| T Consensus 100 p~p~a~~~gl~~~~~~~p~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~i~~~~dl~Gk~~~i~~~~~~s~~~~~l 179 (429) T 2i49_A 100 PMPHLITEGIITNGNKVPMYVLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHTFPNVNQDFWI 179 (429) T ss_dssp THHHHHHTTTTTTTCCCCEEEEEECCBCCEEEEECGGGTTTTCSSCCGGGHHHHHTHHHHHSSCCEEEESSTTSHHHHHH T ss_pred CCHHHHHHHHHHCCCCCCEEEEHHHHCCCCEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCHHHHHH T ss_conf 30899887776237788957633230588617851212025744212450565531887259861026789985899999 Q ss_pred HHHHHHCCCC----CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCC-CCCCE-EEECCCC Q ss_conf 9999862998----507874798999999873960299825047999998367800100256-444-23710-1000277 Q gi|254780170|r 161 ADYFKAHNMK----YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DII-SKSPL-APAIIQG 233 (342) Q Consensus 161 ~~~~~~~~~~----~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~i-skEPl-g~avr~g 233 (342) ..++++.|++ ++++.. ...++..+|.+|++|+++.-.+-.. +......+ +.++. .-+ ..-|. ..+++++ T Consensus 180 ~~~L~~~Gldp~~DV~iv~~-~p~~~~~aL~~G~IDa~~v~eP~~~--~a~~~g~g-~~~~~~~di~~~~~~~vl~~~~~ 255 (429) T 2i49_A 180 RYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGTMDAFSTGDPWPY--RIVTENIG-YMAGLTAQIWPYHPEEYLAIRAD 255 (429) T ss_dssp HHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTCCCEEEEETTHHH--HHHHTTSC-EEEEEHHHHSTTCCCCEEEEEHH T ss_pred HHHHHHCCCCCCCEEEEEEC-CHHHHHHHHHCCCCCEEEECCHHHH--HHHHCCCC-EEEECHHHHCCCCCCEEEEECHH T ss_conf 99999669987640698746-7889999996598457971644999--99961887-36511677468986527996399 Q ss_pred C-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 7-579999887744331121233015208988 Q gi|254780170|r 234 D-TEWYNIVSWTHYAMVTAEELGITQKNINQV 264 (342) Q Consensus 234 D-~~w~d~V~W~~~ali~Aee~git~~nv~~~ 264 (342) - .+=-++|+-.+.|++.|-++==...|-++. T Consensus 256 ~~~~nPe~v~a~l~Al~~A~~w~~~~~n~~e~ 287 (429) T 2i49_A 256 WVDKNPKATKALLKGIMEAQQWIDDPKNRPEV 287 (429) T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTSGGGHHHH T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 99768799999999999999998468899999 No 57 >1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Probab=97.10 E-value=0.0011 Score=42.24 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=60.2 Q ss_pred CCEEEEECCCHHH--HHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE-EECCHHHHHHHHHCCCCHHHCCCCCCCC Q ss_conf 6203431342699--999999862998507874798999999873960299-8250479999983678001002564442 Q gi|254780170|r 146 ASICVQAGTTTEL--TLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY-TGDISALYALKLTNDRPSEHVILPDIIS 222 (342) Q Consensus 146 ~~I~v~~GTT~e~--~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~-~~D~s~La~~~~~~~~p~~~~il~e~is 222 (342) .+||...++-.+. ..+++|++.|++++++.|.+..++.+||.+|++|+. ++..+.|.+.... ++-+.+++. ..+ T Consensus 5 i~iG~~~~~~~~~l~~~k~~~k~~Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~~~--~~~~l~~v~-~~~ 81 (241) T 1xs5_A 5 VGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQE--HNGDLVSVG-NVH 81 (241) T ss_dssp EEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHH--HTCCEEEEE-EEE T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHH--CCCCEEEEE-EEC T ss_conf 99996069859999999999997498899999388177899997699767985578899998854--697389998-841 Q ss_pred CCCEEEECCCC Q ss_conf 37101000277 Q gi|254780170|r 223 KSPLAPAIIQG 233 (342) Q Consensus 223 kEPlg~avr~g 233 (342) .+|++++.+++ T Consensus 82 ~~~~~l~~~~~ 92 (241) T 1xs5_A 82 VEPLALYSRTY 92 (241) T ss_dssp ECCCEEECSSC T ss_pred CCCEEEEECCC T ss_conf 46548883686 No 58 >2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Probab=97.10 E-value=0.0023 Score=40.20 Aligned_cols=145 Identities=10% Similarity=0.112 Sum_probs=85.4 Q ss_pred EEHHHHHHHHHHHH---CCCCCEEEEEECCCCCC-HHHHHC---CCEEEEEECCCCC--C--CCHHCC-C-CCCCCC--C Q ss_conf 15099999999996---79822025998143100-267743---9627998124325--3--201102-7-843532--2 Q gi|254780170|r 58 GFDVDFCRALSSAI---FDDPSKIQYLPLNAKER-FLALQS---KQIDILSRNTDWT--L--LREISL-G-LAFRPI--T 122 (342) Q Consensus 58 GfDVDl~raiAaal---~gd~~kVe~v~~~~~~r-f~aL~s---G~vDil~~~~T~T--~--~Rd~~~-~-v~Fs~~--~ 122 (342) |.|+ +||.+|..+ +|.+.-|+.+|-..... ...+.. .-..+++.+.+.. . .++... . -+|.+. . T Consensus 21 g~D~-~aR~~a~~l~~~lg~~vvV~N~pGagG~~g~~~~~~~~~dg~t~l~~~~~~~~~~~~~~~~~~~~~~d~~~v~~~ 99 (301) T 2qpq_A 21 GTDM-LARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKKDFAAVINV 99 (301) T ss_dssp HHHH-HHHHHHHHHHHGGGSCEEEEECCTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSCTTTTEEEEEEE T ss_pred HHHH-HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHEEEHHHCCCCCCCHHHHHHEEEEE T ss_conf 8999-999999999998799879996799611999999985688998257723312341755088988826642012331 Q ss_pred CCCCEEEEEECCCCCCCHHHHC-------C-CCEEEE-ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE Q ss_conf 3440234630211347536417-------8-620343-134269999999986299850787479899999987396029 Q gi|254780170|r 123 YFDGQGFIMHKKKGISSVSQLS-------G-ASICVQ-AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA 193 (342) Q Consensus 123 ~~dgq~~lVrk~~~i~s~~dL~-------G-~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA 193 (342) ..+...++|++++++++++||- | .+++.. .|+........+.+..+++++.|.|++..+++.++..|++|+ T Consensus 100 ~~~~~~lvv~~ds~~~t~~el~~~ak~~p~~~~~g~~g~g~~~~~~~~~~~~~~g~~~~~Vpy~G~~~~~~all~G~vd~ 179 (301) T 2qpq_A 100 AYVPSVFVVPAGSKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGL 179 (301) T ss_dssp EEEEEEEEEETTCSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSC T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCEEEE T ss_conf 35656999737777440267777643103234251378987999999999861456623661178588888875584455 Q ss_pred EEECCHHHHH Q ss_conf 9825047999 Q gi|254780170|r 194 YTGDISALYA 203 (342) Q Consensus 194 ~~~D~s~La~ 203 (342) .+...+.... T Consensus 180 ~~~~~~~~~~ 189 (301) T 2qpq_A 180 AVVTASSAIP 189 (301) T ss_dssp EEEEHHHHHH T ss_pred EECCHHHHHH T ss_conf 5346787664 No 59 >1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protein structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A* Probab=96.68 E-value=0.0043 Score=38.53 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=101.0 Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC----CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE Q ss_conf 0259981431002677439627998124325320110----278435322344023463021134753641786203431 Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS----LGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA 152 (342) Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~----~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~ 152 (342) .+++.-+-.++.-..+..|.+|+.+.+.-|-.|.... ..+.|... .-.+.++.++.+ +..||+|++|+ T Consensus 62 ~i~v~~~R~~DIp~~V~~G~~DlGItG~D~l~E~~~~v~~~~~LgfG~c----rL~vAvP~~~~~-~~~dl~~~rIA--- 133 (304) T 1nh8_A 62 NVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSS----SFRYAAPAGRNW-TTADLAGMRIA--- 133 (304) T ss_dssp TEEEEEECGGGHHHHHHHSSCSEEEEEHHHHHHHTCCEEEEEECSCCCE----EEEEEEETTSCC-CGGGGTTCEEE--- T ss_pred CEEEEEECHHHHHHHHHCCCCCEEECCHHHHHCCCCCCCHHHHCCCCCE----EEEEEEECCCCC-CHHHHCCCEEE--- T ss_conf 8799998889999999769987623214566417854451433598863----589996068877-83672698999--- Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCC-CCCCEEEECC Q ss_conf 342699999999862998507874798999999873960299825047999998367800100256444-2371010002 Q gi|254780170|r 153 GTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDII-SKSPLAPAII 231 (342) Q Consensus 153 GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~i-skEPlg~avr 231 (342) |.+....++||.+++++++++......|.. -..|-+|+++.=.+.=..++.. ..++..+.+ |.+. ..+. T Consensus 134 -TkYp~ltr~yf~~~gi~~~iv~~~GavE~a--P~~G~AD~IvDivsTG~TLr~N-----gLk~i~~il~sS~a--lii~ 203 (304) T 1nh8_A 134 -TAYPNLVRKDLATKGIEATVIRLDGAVEIS--VQLGVADAIADVVGSGRTLSQH-----DLVAFGEPLCDSEA--VLIE 203 (304) T ss_dssp -ESCHHHHHHHHHHHTCCCEEEECSSCCTHH--HHTTSCSEEEEEESSSHHHHHT-----TEEEEEEEEEEECE--EEEE T ss_pred -ECCHHHHHHHHHHCCCEEEEEECCCCCEEC--CCCCCEEEEEEECCCHHHHHHC-----CCEECCEEHHHHHH--HEEE T ss_conf -716258877798679826999758980652--5788030898752667889987-----99875013101255--6180 Q ss_pred CC---CHH---HHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 77---757---9999887744331121233015208 Q gi|254780170|r 232 QG---DTE---WYNIVSWTHYAMVTAEELGITQKNI 261 (342) Q Consensus 232 ~g---D~~---w~d~V~W~~~ali~Aee~git~~nv 261 (342) +. |++ ..+.+---+.+-+.|.++=.-..|+ T Consensus 204 ~~~~~~~~k~~~i~~l~~ri~gvl~A~~~~~v~~N~ 239 (304) T 1nh8_A 204 RAGTDGQDQTEARDQLVARVQGVVFGQQYLMLDYDC 239 (304) T ss_dssp EC--------CHHHHHHHHHHHHHHHTTEEEEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEC T ss_conf 544688658999999999999999865277889547 No 60 >2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A Probab=96.53 E-value=0.0071 Score=37.13 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=77.6 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH-------HCCCCCCCCCCCCC-CEEEEEEC Q ss_conf 99999999967982202599814310026774396279981243253201-------10278435322344-02346302 Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE-------ISLGLAFRPITYFD-GQGFIMHK 133 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd-------~~~~v~Fs~~~~~d-gq~~lVrk 133 (342) .+.+.+-.++| -+|+.++.+....+.+|.+|+||+.... |.+... ....+.-..+.+.. .+++.|++ T Consensus 24 ~i~~~vLe~~G---y~Ve~~~~~~~~~~~al~~GdID~~~e~--W~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~ 98 (298) T 2rin_A 24 ATATTILEALG---YETDVKVLSVPVTYTSLKNKDIDVFLGN--WMPTMEADIAPYREDKSVETVRENLAGAKYTLATNA 98 (298) T ss_dssp HHHHHHHHHHT---CEEEEECCCHHHHHHHHHHTSCCEEEEE--EETTTHHHHHHHHTTTSEEEEEEEEEEEEEEEEEEH T ss_pred HHHHHHHHHCC---CCEEEEECCHHHHHHHHHCCCCEEEEEC--CCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEEECC T ss_conf 99999999869---9248986870999999987998088404--664001667998861453111444568615887530 Q ss_pred C---CCCCCHHHHC-------CCCEEEEECCCHHHHHHHHHHHCCCCC--CEEEECCHH----HHHHHHHCCCEEEEEEC Q ss_conf 1---1347536417-------862034313426999999998629985--078747989----99999873960299825 Q gi|254780170|r 134 K---KGISSVSQLS-------GASICVQAGTTTELTLADYFKAHNMKY--HPIVFERVE----EIDAAYRAHRCDAYTGD 197 (342) Q Consensus 134 ~---~~i~s~~dL~-------G~~I~v~~GTT~e~~l~~~~~~~~~~~--~~v~~~~~~----~a~~al~~Gr~DA~~~D 197 (342) . .+|++++||. +..++...|..............++.. ..+...+.. +...++.+|+++++..= T Consensus 99 ~~a~~~i~sisDL~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~a~l~~A~~~~~~~v~~~w 178 (298) T 2rin_A 99 KGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGMLAQVARAEKSGDPIVFLGW 178 (298) T ss_dssp HHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEECCCHHHHHHHHHHHHHTTCCCEEEEE T ss_pred HHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 44442767477776535523774672256422243314566650268876542046467799999999846885799826 Q ss_pred C Q ss_conf 0 Q gi|254780170|r 198 I 198 (342) Q Consensus 198 ~ 198 (342) . T Consensus 179 ~ 179 (298) T 2rin_A 179 E 179 (298) T ss_dssp E T ss_pred C T ss_conf 8 No 61 >3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis} Probab=96.48 E-value=0.0047 Score=38.28 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=59.8 Q ss_pred CCCCEEEEECCCHHHH---HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCCHHHCCCCC Q ss_conf 7862034313426999---9999986299850787479899999987396029-98250479999983678001002564 Q gi|254780170|r 144 SGASICVQAGTTTELT---LADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA-YTGDISALYALKLTNDRPSEHVILPD 219 (342) Q Consensus 144 ~G~~I~v~~GTT~e~~---l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA-~~~D~s~La~~~~~~~~p~~~~il~e 219 (342) .-.+|++..|.-++.. ++..+++.|++++++.|.+..+...||.+|++|+ +....+-|...... +..+.+++.. T Consensus 23 ~~i~ig~~~~~~~~~~~~~v~~~~k~~Gi~Ve~v~f~d~~~~n~AL~~G~iD~n~~q~~p~l~~~~~~--~g~~l~~v~~ 100 (275) T 3gxa_A 23 KEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKE--HNLDITEVFQ 100 (275) T ss_dssp CEEEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHH--HTCCEEEEEE T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEECCCCHHHHHHHHHH--CCCCEEEEEE T ss_conf 52899960698799999998999996598799999578335789986699554314457889999997--7996799856 Q ss_pred CCCCCCEEEECCC Q ss_conf 4423710100027 Q gi|254780170|r 220 IISKSPLAPAIIQ 232 (342) Q Consensus 220 ~iskEPlg~avr~ 232 (342) ...+|+|...++ T Consensus 101 -~~~~~~glys~k 112 (275) T 3gxa_A 101 -VPTAPLGLYPGK 112 (275) T ss_dssp -CCBCCCEEEESS T ss_pred -EECCCEEEEECC T ss_conf -311550666326 No 62 >2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, cytoplasm, histidine, magnesium; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum} Probab=96.47 E-value=0.0046 Score=38.36 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=110.8 Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC----CCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEE Q ss_conf 0259981431002677439627998124325320110----278435322344023463021134753641-78620343 Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS----LGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQ 151 (342) Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~----~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~ 151 (342) .+++.-+-.++.-..+..|.+|+.+.+.-|-.|.... +.+.|... .-.+.++++..+.+++|| .|++|+ T Consensus 46 ~i~~~~~R~~DIp~~V~~G~~DlGItG~D~l~E~~~~v~~l~dLgfG~c----rlvvAvP~~~~~~~~~dl~~~~rIA-- 119 (289) T 2vd3_A 46 QIEVMFSRAADIPEFVADGAADLGITGYDLIVERGSDVEILEDLKYGRA----SLVLAAPEDSTIRGPEDIPRGAVIA-- 119 (289) T ss_dssp TEEEEEECTTTHHHHHHHTSSSEEEEEHHHHHHHTCCCEEEEECSCSCE----EEEEEEETTSSCCSGGGCCTTCEEE-- T ss_pred CEEEEEECHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCEEEECCCCCCE----EEEEEECCCCCCCCHHHHCCCCEEE-- T ss_conf 8799998889999999859866135430443340267157102487767----9999952766547876833584898-- Q ss_pred ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECC Q ss_conf 13426999999998629985078747989999998739602998250479999983678001002564442371010002 Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAII 231 (342) Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr 231 (342) |.+....++||.++|++++++......|.. -.-|-+|+++.=.+.=..++.. ..+++.+.+..+..=++=+ T Consensus 120 --TkYp~it~~~~~~~gi~~~iv~l~GavE~a--P~lG~AD~IvDivsTG~TLr~N-----gL~~i~~il~ssa~LI~n~ 190 (289) T 2vd3_A 120 --TEFPGITENYLREHGIDAEVVELTGSTEIA--PFIGVADLITDLSSTGTTLRMN-----HLRVIDTILESSVKLIANR 190 (289) T ss_dssp --ESCHHHHHHHHHHTTCCCEEEECSSCGGGT--TTTTSCSEEEEEESSTHHHHHT-----TEEEEEEEEEECEEEEECH T ss_pred --EEHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCEEEEECCCHHHHHHC-----CCEECCCEEHEEHHHEECC T ss_conf --514669999999819537999657875468--7878441768861788889987-----6987402000136231656 Q ss_pred C---CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH Q ss_conf 7---775799998877443311212330152089886226717788762 Q gi|254780170|r 232 Q---GDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342) Q Consensus 232 ~---gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342) + ...+..+..---+.+.+.|+++-.-.-|+. .+.-.++..+| T Consensus 191 ~s~~~k~~~i~~l~~rl~~vl~a~~~~~i~~n~p----~~~l~~v~~~l 235 (289) T 2vd3_A 191 ESYATKSGIIEELRTGIRGVIDAEGKRLVMLNID----RKNLDRVRALM 235 (289) T ss_dssp HHHHHSHHHHHHHHHHHHHHHHTTTEEEEEEEEE----GGGHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECC----HHHHHHHHHHC T ss_conf 4432348999999999853774530899999687----76699999857 No 63 >2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR structural genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli K12} PDB: 3hfu_A Probab=96.37 E-value=0.057 Score=31.43 Aligned_cols=188 Identities=9% Similarity=0.065 Sum_probs=115.8 Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342) .+|+|++|+...+.. .+=.++.+.+.++- ....+++...+..+....|.+|++|+.+...... T Consensus 28 ~~g~l~Ig~~~~~~~-----------~~l~~~l~~f~~~~--P~i~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~~---- 90 (238) T 2hxr_A 28 TRGSLRIAVTPTFTS-----------YFIGPLMADFYARY--PSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVH---- 90 (238) T ss_dssp ---CEEEEECHHHHT-----------TTHHHHHHHHHHHC--TTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCC---- T ss_pred CCEEEEEEEEHHHHH-----------HHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHCCCCHHHHHCCCCC---- T ss_conf 842899995378999-----------99999999999988--9988997328879999999869830012025544---- Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH Q ss_conf 1027843532234402346302113-----475364178620343-13426999999998629985078-7479899999 Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342) Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342) ..++.+. +.+.+...++++++.. .-+++||.+....+. .++.....+.++++..+...+++ .+++...+.. T Consensus 91 -~~~~~~~-~l~~~~~~~~~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (238) T 2hxr_A 91 -SPELEAI-PLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLE 168 (238) T ss_dssp -CTTEEEE-EEEEEEEEEEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHH T ss_pred -CCCHHHH-HHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHH T ss_conf -3104333-34554223213200466540358799981396898489985799999999976998752123687799999 Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHHHHHH Q ss_conf 9873960299825047999998367800100256444237101000277757---99998877 Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNIVSWT 244 (342) Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~V~W~ 244 (342) ...+|..=++.... ++ . ...+-....+.+..+ .-+++.+.|++... -+.+++|. T Consensus 169 ~v~~g~gi~~~p~~--~~-~--~~~~~~~~~~~~~~~-~~~~~li~~~~~~~s~~~~~fi~~~ 225 (238) T 2hxr_A 169 LIRRTSLSTLLPAA--IA-T--QHDGLKAISLAPPLL-ERTAVLLRRKNSWQTAAAKAFLHMA 225 (238) T ss_dssp HHHHSSCBEEEETH--HH-H--HCTTEEEEEESSCSC-EEEEEEEEETTSCCCHHHHHHHHHH T ss_pred HHHHCCEEEEEHHH--HH-H--HCCCCEEEECCCCCC-EEEEEEEEECCCCCCHHHHHHHHHH T ss_conf 99939979970299--86-0--378933997889986-2499999989597899999999999 No 64 >1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Probab=96.31 E-value=0.0086 Score=36.60 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=55.6 Q ss_pred CCCEEEEECCCHH-HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE-EECCHHHHHHHHHCCCCHHHCCCCCCCC Q ss_conf 8620343134269-9999999862998507874798999999873960299-8250479999983678001002564442 Q gi|254780170|r 145 GASICVQAGTTTE-LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY-TGDISALYALKLTNDRPSEHVILPDIIS 222 (342) Q Consensus 145 G~~I~v~~GTT~e-~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~-~~D~s~La~~~~~~~~p~~~~il~e~is 222 (342) -.+||++...... ..+++.+++.|++++++.|.+..+..+||.+|++|+- +.+.+.|........ ..+.+++. ... T Consensus 40 ~i~IG~~~~~~~~~~~~~~~~kk~Gl~Ve~~~F~d~~~~~~AL~~G~ID~~~~~~~p~l~~~~k~~~-g~~l~~v~-~~~ 117 (295) T 1p99_A 40 KVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHK-GTKISALS-TTV 117 (295) T ss_dssp CEEEEESSSCCHHHHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHHHCT-TCCEEEEE-EEE T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEECCCHHHHHHHHHHCC-CCEEEEEC-CCC T ss_conf 4999967983899999999999759889999817827799999759967675178999999997679-95599944-521 Q ss_pred CCCEEEECCC Q ss_conf 3710100027 Q gi|254780170|r 223 KSPLAPAIIQ 232 (342) Q Consensus 223 kEPlg~avr~ 232 (342) .+|++...++ T Consensus 118 ~~~~~~~~~~ 127 (295) T 1p99_A 118 LAPLGIYSDK 127 (295) T ss_dssp ECCCEEECSS T ss_pred CCCCCCCCCC T ss_conf 1231012656 No 65 >3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} Probab=96.22 E-value=0.068 Score=30.92 Aligned_cols=180 Identities=10% Similarity=-0.008 Sum_probs=108.4 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) +|.+++|+...... .+-.++.+.+.+.- ...++++...+..+.+..|.+|++|+.+....... T Consensus 94 ~~~~~i~~~~~~~~-----------~~l~~~l~~~~~~~--P~i~l~~~~~~~~~~~~~L~~~~~Di~i~~~~~~~---- 156 (306) T 3fzv_A 94 AGQIDIGCFETVAP-----------LYLPGLIAGFRQAY--PGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLD---- 156 (306) T ss_dssp CEEEEEEEEGGGHH-----------HHHHHHHHHHHHHC--TTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCC---- T ss_pred CCEEEEEEEHHHHH-----------HHHHHHHHHHHHHC--CCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCCC---- T ss_conf 75268885047899-----------99899999998538--97499999787799999998599736888357899---- Q ss_pred CCCCCCCCCCCCC-CEEEEEECCCC-----CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHH Q ss_conf 0278435322344-02346302113-----4753641786203431342699999999862998507-874798999999 Q gi|254780170|r 113 SLGLAFRPITYFD-GQGFIMHKKKG-----ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAA 185 (342) Q Consensus 113 ~~~v~Fs~~~~~d-gq~~lVrk~~~-----i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~a 185 (342) ...... +.+.. -..+.++++.. ..+++||.+..+....+......+.+++...+..... ..+++......+ T Consensus 157 -~~~~~~-~l~~~~~~~v~~~~~~~l~~~~~~~~~dl~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 234 (306) T 3fzv_A 157 -STIETE-PLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGM 234 (306) T ss_dssp -TTEEEE-ESSCCBCCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHH T ss_pred -CCCEEE-EECCCCEEEEEECCCHHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH T ss_conf -872589-921462689996264265337889999981799898459876510455676538775425467888999999 Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH Q ss_conf 873960299825047999998367800100256--44423710100027775 Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT 235 (342) Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~ 235 (342) +..|..=++..+..... ...+....+++| +......+.++.+++.. T Consensus 235 v~~g~gi~~lp~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 282 (306) T 3fzv_A 235 VGQGFGFSLLVTRPHSE----CTYDGKKVVMVDLAEPVSTSGLAAAWLKRAQ 282 (306) T ss_dssp HHTTSCBEEECCCCSCS----BCTTSCBEEEEEESSCCCBCCCEEEEETTSC T ss_pred HHCCCEEEEEEHHHHHH----HHHCCCCEEEEECCCCCCCCEEEEEEECCCC T ss_conf 98099499942587889----8756997799867788764279999989898 No 66 >3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A Probab=96.11 E-value=0.039 Score=32.43 Aligned_cols=120 Identities=11% Similarity=0.128 Sum_probs=72.2 Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH------HCCCCCCCCCCCCC-CEEEEEECCCCCCCHHHHCCCCE Q ss_conf 202599814310026774396279981243253201------10278435322344-02346302113475364178620 Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE------ISLGLAFRPITYFD-GQGFIMHKKKGISSVSQLSGASI 148 (342) Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd------~~~~v~Fs~~~~~d-gq~~lVrk~~~i~s~~dL~G~~I 148 (342) .+||.+..+....+++|.+|+||+.... |.+... ...++.-..+.+.. .+++.|++..++++++||++..- T Consensus 30 y~Ve~~~~~~~~~~~al~~G~iDi~~e~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vp~~~~i~si~dl~~~~~ 107 (256) T 3l6g_A 30 FDVKTTALDNAVAWQTVANGQADGMVSA--WLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQAN 107 (256) T ss_dssp EEEEEEECCHHHHHHHHHTTSSSEEEEE--EETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEETTSCCCBGGGCSSGGG T ss_pred CCEEEEECCCHHHHHHHHCCCCCEEEEC--CCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHH T ss_conf 9459987884899999987998298511--43245566676326765880224678626898755124025778765664 Q ss_pred EEEECCCHH----HHHHHHHHHCCC--CCCEEEECCHH----HHHHHHHCCCEEEEEECC Q ss_conf 343134269----999999986299--85078747989----999998739602998250 Q gi|254780170|r 149 CVQAGTTTE----LTLADYFKAHNM--KYHPIVFERVE----EIDAAYRAHRCDAYTGDI 198 (342) Q Consensus 149 ~v~~GTT~e----~~l~~~~~~~~~--~~~~v~~~~~~----~a~~al~~Gr~DA~~~D~ 198 (342) ....|.... ......+...+. .++++ ..+.. +...|+.+|+++.+..-. T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~A~~~~~~~v~~~w~ 166 (256) T 3l6g_A 108 KTITGIEPGAGVMAASEKTLNSYDNLKDWKLV-PSSSGAMTVALGEAIKQHKDIVITGWS 166 (256) T ss_dssp GEEECCCTTCHHHHHHHHHHTTCGGGTTCEEE-CCCHHHHHHHHHHHHHTTCCCCEEEEE T ss_pred HCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEE-CCCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 04436786544241137677540345443120-465077899999997647977999506 No 67 >2b6d_A Lactotransferrin; complex, drugs, lactoferrin; HET: NAG MAN BMA DIF; 1.40A {Bos taurus} SCOP: c.94.1.2 PDB: 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A* 2dwa_A* 2dwh_A* 2dwi_A* 2dwj_A* 2dxr_A* 2dxy_A* 2dyx_A* 2e0s_A* 2e1s_A* 2fa7_A* 2g5j_A* 2g93_A* 2h4i_A* ... Probab=95.92 E-value=0.0079 Score=36.86 Aligned_cols=175 Identities=10% Similarity=0.027 Sum_probs=94.8 Q ss_pred HHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECC--CCCCCCHHCCCCCCC----------------CCC Q ss_conf 9999999996798220259981-431002677439627998124--325320110278435----------------322 Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNT--DWTLLREISLGLAFR----------------PIT 122 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~--T~T~~Rd~~~~v~Fs----------------~~~ 122 (342) +=|..+++++. .+|+.+.. +..+-+.+|.+|++|+++-.- .++..+.....+-+. ... T Consensus 15 ~KC~~ls~~~~---~~v~Cv~~~s~~~Ci~~I~~g~ADi~~ld~~~~~~A~k~~l~~vvae~~~~~~~~~~~~~~~~~~~ 91 (345) T 2b6d_A 15 KKCQQWSQQSG---QNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEG 91 (345) T ss_dssp HHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHHTTCEEEEEEEECCSSSCSSCGGGSCCCC T ss_pred HHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC T ss_conf 99999999639---986999679999999999769987899781782222033895322123236876545300246771 Q ss_pred CCCCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHHHHHH-HHH-HHCCCCC--------------------C------- Q ss_conf 344023463021134753641786203431-342699999-999-8629985--------------------0------- Q gi|254780170|r 123 YFDGQGFIMHKKKGISSVSQLSGASICVQA-GTTTELTLA-DYF-KAHNMKY--------------------H------- 172 (342) Q Consensus 123 ~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e~~l~-~~~-~~~~~~~--------------------~------- 172 (342) || ...+||+++.+.++.||.||+.|-.- ++|.--++- .++ ....+.. + T Consensus 92 y~--avaVvkk~s~~~~~~dLkGKksChtg~~~taGw~iP~~~Li~~~~~~~~~~fF~~sC~pg~~~~~~lc~lc~~~~~ 169 (345) T 2b6d_A 92 YL--AVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQ 169 (345) T ss_dssp EE--EEEEEETTSTTCCGGGCTTSEEEESCTTCTTTTHHHHHHHHHHHTCSCTTSSSSEEECTTSCTTSGGGTTCCCSTT T ss_pred EE--EEEEEECCCCCCCHHHHCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC T ss_conf 58--9998616888777777079740325888664533334432368865553322134316475673023444068876 Q ss_pred ---------EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH--------HCCCCHHHCCCCC-------------CCC Q ss_conf ---------7874798999999873960299825047999998--------3678001002564-------------442 Q gi|254780170|r 173 ---------PIVFERVEEIDAAYRAHRCDAYTGDISALYALKL--------TNDRPSEHVILPD-------------IIS 222 (342) Q Consensus 173 ---------~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~--------~~~~p~~~~il~e-------------~is 222 (342) .-.|-.+.-|++=|..|.-|.-....+.+.-.-. ..-++++|.+|-. .+. T Consensus 170 ~~~~C~~~~~~~Y~G~~GAlrCL~eg~GDVAFv~~~~v~~~~~~~~~~~~~~~~~~~dy~lLC~dG~~~~~~~~~~C~l~ 249 (345) T 2b6d_A 170 GLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLA 249 (345) T ss_dssp SCSTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHHTSTTSCCCTTTTTCCGGGEEEECTTSCEEEGGGGGGSCSE T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCHHHHCCCCCHHEECCCCCCCCCCCCCCCCCC T ss_conf 55556799888775603578998718984589853408875388763210110475433106889980467888766550 Q ss_pred CCCEEEECCCCCHHHHHHHHH Q ss_conf 371010002777579999887 Q gi|254780170|r 223 KSPLAPAIIQGDTEWYNIVSW 243 (342) Q Consensus 223 kEPlg~avr~gD~~w~d~V~W 243 (342) +.|-..+|-+.| +.+.|.. T Consensus 250 ~~P~~~vv~~~~--~~~~v~~ 268 (345) T 2b6d_A 250 VAPNHAVVSRSD--RAAHVEQ 268 (345) T ss_dssp EECCCEEEECHH--HHHHHHH T ss_pred CCCCCEEEECCC--HHHHHHH T ss_conf 068823796674--1689999 No 68 >1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1 Probab=95.74 E-value=0.11 Score=29.66 Aligned_cols=128 Identities=14% Similarity=0.147 Sum_probs=71.3 Q ss_pred HHHHHHHHHHCCC--CCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC---- Q ss_conf 9999999996798--2202599814310026774396279981243253201102784353223440234630211---- Q gi|254780170|r 62 DFCRALSSAIFDD--PSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK---- 135 (342) Q Consensus 62 Dl~raiAaal~gd--~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~---- 135 (342) .+.++++++--.. ..+|++....+..-+..|.+|++|+.+..-.++.+ +....+. ..+.-+++..++|.++. T Consensus 40 ~l~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~s~~~~~~-e~~~~~~-~~~ia~~~~~ivv~~~n~~~~ 117 (290) T 1twy_A 40 RIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTES-EAQNTLH-TFTLAFDGLAIVVNQANPVTN 117 (290) T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESSCCCTT-TCCTTCE-EEEEEEEEEEEEECTTCCCCE T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHH-HHHCCCE-EEEEEECCEEEEECCCCCCCC T ss_conf 99999999999888895799971686799999982686412255400134-6634505-677886025764057785234 Q ss_pred ------------CCCCHHHHCC--CCEEEE---ECCCHHHHHHHHHHH---------CCCCCCEEEECCHHHHHHHHHCC Q ss_conf ------------3475364178--620343---134269999999986---------29985078747989999998739 Q gi|254780170|r 136 ------------GISSVSQLSG--ASICVQ---AGTTTELTLADYFKA---------HNMKYHPIVFERVEEIDAAYRAH 189 (342) Q Consensus 136 ------------~i~s~~dL~G--~~I~v~---~GTT~e~~l~~~~~~---------~~~~~~~v~~~~~~~a~~al~~G 189 (342) .|+.|+|+.| ..|.+. .+|.+.....++... ....-.....++.......+..+ T Consensus 118 ls~~~L~~i~~g~it~W~~~~~~~~~i~~~~r~~~Sgt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~ 197 (290) T 1twy_A 118 LTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHN 197 (290) T ss_dssp ECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCHHHHHHHHHHTCEEEETTEEEECSCTTSEEESSHHHHHHHHHHC T ss_pred CCHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCC T ss_conf 58989856442876753104899884178527999727999999961044212121023577127943848999999648 Q ss_pred CE Q ss_conf 60 Q gi|254780170|r 190 RC 191 (342) Q Consensus 190 r~ 191 (342) .- T Consensus 198 ~~ 199 (290) T 1twy_A 198 TQ 199 (290) T ss_dssp TT T ss_pred CC T ss_conf 88 No 69 >3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis} Probab=95.54 E-value=0.13 Score=29.09 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=115.5 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) +|.|++|+......+ +=..+.+.+.+.- ...++++...+..+.+..|.+|++|+.+..... . T Consensus 3 ~G~lrIG~~~s~~~~-----------~lp~~l~~f~~~~--P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~--~--- 64 (219) T 3jv9_A 3 EGAFKLGLIFTVAPY-----------LLPKLIVSLRRTA--PKMPLMLEENYTHTLTESLKRGDVDAIIVAEPF--Q--- 64 (219) T ss_dssp CCCEEEEEETTTHHH-----------HHHHHHHHHHHHS--TTCCEEEEEECHHHHHHHHHHTSSSEEEEESSC--C--- T ss_pred CEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHCCCEEEEEECCCC--C--- T ss_conf 028999977788999-----------9999999999988--892899998873777765616958887502687--7--- Q ss_pred CCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCC-----C-CEEEECCHH Q ss_conf 02784353223440234630211-----347536417862-03431342699999999862998-----5-078747989 Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMK-----Y-HPIVFERVE 180 (342) Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~-----~-~~v~~~~~~ 180 (342) ..++.+. +.+.+...++++++. ...+.+++.... +....+......+...+...+.+ . .....++.. T Consensus 65 ~~~~~~~-~l~~e~~~lv~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (219) T 3jv9_A 65 EPGIVTE-PLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSIN 143 (219) T ss_dssp CTTEEEE-EEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHH T ss_pred CCCEEEE-EECCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHH T ss_conf 7874898-503310899975664212245421133322774446888526789999999758985313455626778799 Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CC-CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999873960299825047999998367800100256--44-4237101000277757999988774433112123301 Q gi|254780170|r 181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DI-ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGIT 257 (342) Q Consensus 181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~-iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git 257 (342) ...+...+|-.=++.-... + + ..+.....++| +. .+. .+..+.|++-. -...+++.+..+.+++-.||+ T Consensus 144 ~~~~lv~~G~Gi~~lP~~~-~---~--~~~~~~l~~~pl~~~~~~~-~i~lv~~k~~~-~~~~~~~~~~~l~~~~~~~~~ 215 (219) T 3jv9_A 144 TIRHMVASGLAISVLPATA-L---T--ENDHMLFSIIPFEGTPPSR-RVVLAYRRNFV-RPKALSAMKAAIMQSQLHGVS 215 (219) T ss_dssp HHHHHHHHTSCEEEEEGGG-C---C--TTCTTTEEEECCSSSCCEE-EEEEEEETTCS-CHHHHHHHHHHHHTSCCSSCE T ss_pred HHHHHHHCCCEEEECCHHH-H---H--HCCCCCEEEEECCCCCCEE-EEEEEEECCCC-CCHHHHHHHHHHHHHCCCCCC T ss_conf 9999998599899871889-7---1--1427998999888998545-99999989498-899999999999973556765 No 70 >3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis} Probab=95.46 E-value=0.082 Score=30.41 Aligned_cols=191 Identities=8% Similarity=0.073 Sum_probs=109.6 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) +|.|++|+.+....+ +=.++.+++.+.- - ..++++....+.+.+..|.+|++|+.+....... T Consensus 10 ~G~l~ig~~~s~~~~-----------~lp~~l~~f~~~~-P-~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~~~~~---- 72 (232) T 3ho7_A 10 TGRLNIAVLPTIAPY-----------LLPRVFPIWKKEL-A-GLEIHVSEMQTSRCLASLLSGEIDMAIIASKAET---- 72 (232) T ss_dssp CEEEEEEECTTTHHH-----------HHHHHHHHHHHHS-T-TEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCC---- T ss_pred EEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC-C-CCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCC---- T ss_conf 279999943778999-----------9999999999988-8-9689999898289999997798428986347655---- Q ss_pred CCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCC-CCE-EEECCHHHHHH Q ss_conf 02784353223440234630211-----347536417862034-31342699999999862998-507-87479899999 Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASICV-QAGTTTELTLADYFKAHNMK-YHP-IVFERVEEIDA 184 (342) Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~-~~~-v~~~~~~~a~~ 184 (342) .++.+- +.+-+.-.++++++. ..-+.++|....... ..++.....+.+++...+.. .++ ...++...+.. T Consensus 73 -~~l~~~-~l~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (232) T 3ho7_A 73 -EGLEDD-LLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMR 150 (232) T ss_dssp -TTEEEE-EEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHH T ss_pred -CCCEEE-EECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH T ss_conf -430034-200010222111345433222221333145537982599742679999999759988765013588899999 Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 9873960299825047999998367800100256--444237101000277757999988774433 Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAM 248 (342) Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~al 248 (342) ...+|-.=++.-... + ....+.+...+.| +....-+++.+.|++... ...++|.+..+ T Consensus 151 lv~~g~Gia~lP~~~-~----~~~~~~~~l~~~p~~~~~~~~~i~lv~~~~~~~-~~~~~~fi~~l 210 (232) T 3ho7_A 151 LVESGQGITFIPQLT-V----EQLSPSQKELVRPFGMPRPVREVRLAVRQDYSR-RKLREQLIGLL 210 (232) T ss_dssp HHHTTCCEEEEEGGG-G----GGSCHHHHTTEECBCSSEEEEEEEEEEETTCSC-HHHHHHHHHHH T ss_pred HHHHCCEEEEECHHH-H----HHHCCCCCEEEEECCCCCCEEEEEEEEECCCCC-CHHHHHHHHHH T ss_conf 999399899830999-9----855027988999889998655999999893988-99999999999 No 71 >1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 Probab=95.29 E-value=0.12 Score=29.35 Aligned_cols=252 Identities=17% Similarity=0.115 Sum_probs=118.7 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) +-+||+|.+++ | .|.=+--++..-.+.....++++..+..+.-..+.+|++|+...+ +...-|-. T Consensus 9 ~~~i~ig~sp~-~-------------~d~~~f~al~~g~~~~~~~~e~~~~d~~~LN~~l~~G~lDv~~iS-s~~y~~~~ 73 (280) T 1zbm_A 9 SHKIRVAHTPD-A-------------DDAFMFYAMTHGKVDTWLEIEHVIEDIETLNRKAFNAEYEVTAIS-AHAYALLD 73 (280) T ss_dssp TCEEEEEECSS-H-------------HHHHHHHHHHTTCSCCSCEEEEEECCHHHHHHHGGGTCCSEEEEE-HHHHTTST T ss_pred CCEEEEEECCC-C-------------CHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCCEEEHH-HHHHHHCC T ss_conf 64179997799-9-------------638887899839978998635864799999999986999997171-99999442 Q ss_pred C-C-CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCC Q ss_conf 0-2-7843532234402346302113475364178620343134269999999986299850787479899999987396 Q gi|254780170|r 113 S-L-GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHR 190 (342) Q Consensus 113 ~-~-~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr 190 (342) . + -+... -..-+|.+.+|-. ++..+|+|++|++..-+|+...|-..+-. .+..+. ....+...++..|+ T Consensus 74 ~~y~lLp~~-s~~~~g~~~~v~~----~~~~~L~gk~ial~~~stTs~~Ll~ill~---~~~~~~-~~~~~~~~al~~g~ 144 (280) T 1zbm_A 74 DKYRILSAG-ASVGDGYGPVVVA----KSEISLDGKRIAVPGRYTTANLLLKLAVE---DFEPVE-MPFDRIIQAVLDEE 144 (280) T ss_dssp TTEEECSSC-CEEESSCCCEEEE----SSCCCCTTCEEEESCTTSHHHHHHHHHCS---SCEEEE-CCGGGHHHHHHTTS T ss_pred CCEEECCCE-EEEECCCEEEEEE----CCCCCCCCCEEEECCCCCHHHHHHHHHHH---CCCCCC-CCHHHCCCHHHCCC T ss_conf 406687863-8840476148996----77667789879856987199999999985---167613-68653350544488 Q ss_pred EEEE--EECCHHHHHHHHHCCCCHHHCCC--CC---CCCCCCE--E-EECCCC-CHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 0299--82504799999836780010025--64---4423710--1-000277-75799998877443311212330152 Q gi|254780170|r 191 CDAY--TGDISALYALKLTNDRPSEHVIL--PD---IISKSPL--A-PAIIQG-DTEWYNIVSWTHYAMVTAEELGITQK 259 (342) Q Consensus 191 ~DA~--~~D~s~La~~~~~~~~p~~~~il--~e---~iskEPl--g-~avr~g-D~~w~d~V~W~~~ali~Aee~git~~ 259 (342) +||. +.|.. |.. . ..+-+.+. .+ ..+.-|+ | .++|++ +++.. .-+..++.+|-+++. + T Consensus 145 ~Da~llIgd~a-l~~---~--~~~~~~v~DLge~W~~~tglP~vfa~~~vrr~~~~~~~---~~~~~al~~s~~~~~--~ 213 (280) T 1zbm_A 145 VDAGLLIHEGQ-ITY---A--DYGLKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQ---EEFLRAMRESIAFAI--E 213 (280) T ss_dssp SSEEEECSGGG-GTG---G--GGTCEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHH---HHHHHHHHHHHHHHH--H T ss_pred CCCCEECCHHH-HCC---C--CCCCCEEEEHHHHHCCCCCCCEEEEEEEEECCCCHHHH---HHHHHHHHHHHHHHH--H T ss_conf 87031557588-440---0--24990896626676357798716578875033799999---999999999999999--7 Q ss_pred HHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHH---CCCCC Q ss_conf 089886226717788762358876503337998679999999718699987886488899988755760342---89530 Q gi|254780170|r 260 NINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDRNLGNQSELKIPRGYNALWS---KGGLM 336 (342) Q Consensus 260 nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~rnlg~~s~l~~~r~~N~lw~---~gGl~ 336 (342) |.++... .... ...||+.....+-+ ..|=+.+.-+||+. --+|++..|. +=||+ T Consensus 214 ~~~e~~~--------~~~~--------~~~~l~~~~~~~y~---~~Y~~~~sy~l~~~----~~~gL~~f~~~a~~~Gli 270 (280) T 1zbm_A 214 NPDEAIE--------YAMK--------YSRGLDRERAKRFA---MMYVNDYTYNMPES----VDAALKKLYEMAEAKGLI 270 (280) T ss_dssp SHHHHHH--------HHGG--------GCTTCCHHHHHHHH---HHHSSHHHHSCCHH----HHHHHHHHHHHHHTTTCC T ss_pred CHHHHHH--------HHHH--------HHCCCCHHHHHHHH---HHHHHHEEECCCHH----HHHHHHHHHHHHHHCCCC T ss_conf 9899999--------9999--------81399999999999---99887716489999----999999999999987999 Q ss_pred CCCCCC Q ss_conf 378889 Q gi|254780170|r 337 YAPPIR 342 (342) Q Consensus 337 y~pp~r 342 (342) =.||++ T Consensus 271 ~~P~l~ 276 (280) T 1zbm_A 271 KMPKLD 276 (280) T ss_dssp ------ T ss_pred CCCCCC T ss_conf 999877 No 72 >3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis} Probab=95.17 E-value=0.055 Score=31.49 Aligned_cols=174 Identities=12% Similarity=0.071 Sum_probs=94.0 Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHCCCEEEEEECCCCCCCC--- Q ss_conf 49998717898830688989880150999999999967982202599814-31002677439627998124325320--- Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQSKQIDILSRNTDWTLLR--- 110 (342) Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~sG~vDil~~~~T~T~~R--- 110 (342) +|++|++.+. ++- .--+.++..+++.+ .+||++..+ +.+.-.||.+|++|+-+.....-++- T Consensus 2 ~i~vg~~~~p--~~~---------~~~e~vk~~~k~~G---i~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~ 67 (245) T 3ir1_A 2 EIVFGTTVGD--FGD---------MVKEQIQPELEKKG---YTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKK 67 (245) T ss_dssp EEEEEEETTH--HHH---------HHHHTHHHHHHTTT---CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHH T ss_pred EEEEEECCCC--HHH---------HHHHHHHHHHHHCC---CEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHH T ss_conf 5999807898--799---------99999889999659---769999956852177998669965231227999999999 Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCCC-------------------- Q ss_conf 110278435322344023463021134753641-78620343134269999999986299-------------------- Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHNM-------------------- 169 (342) Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~-------------------- 169 (342) +....+.-..+.|+.+.++.-+ ++++++|| +|.+|++....+++.-.-..+.+.|+ T Consensus 68 ~~g~~L~~v~~~~~~p~glYS~---k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~GlI~lk~~~~~~~~t~~DI~~N 144 (245) T 3ir1_A 68 EHNLDITEVFQVPTAPLGLYPG---KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAEN 144 (245) T ss_dssp HHTCCEEEEEECCBCCCEEEES---SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEEC T ss_pred HCCCCEEEEEEEEECCEEEECC---CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCC T ss_conf 8599669986654424276516---8686656799998997458658999999998789389658988664776454155 Q ss_pred --CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC Q ss_conf --850787479899999987396029982504799999836780010025644423710--10002777 Q gi|254780170|r 170 --KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD 234 (342) Q Consensus 170 --~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD 234 (342) +++++..+. .+..++| ..+|+.+.... ....+.+ +|.+..+.+. .+|| .+++|++| T Consensus 145 pk~l~~~ev~~-a~l~~al--~dvD~avi~~~--~~~~agl-~~~~~l~~e~---~~~y~~~~vvr~~d 204 (245) T 3ir1_A 145 LKNIKIVELEA-AQLPRSR--ADVDFAVVNGN--YAISSGM-KLTEALFQEP---SFAYVNWSAVKTAD 204 (245) T ss_dssp TTCCEEEEECG-GGSGGGG--GTSSEEEECHH--HHHHTTC-CGGGCSEECC---CCTTCCEEEEEGGG T ss_pred CCCCEEEECCH-HHHHHHC--CCCCEEEECCH--HHHHCCC-CHHHCEEECC---CCCEEEEEEEECCC T ss_conf 64665787688-8855532--56778997140--6978797-8234001078---88728999980766 No 73 >1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1 Probab=95.09 E-value=0.18 Score=28.20 Aligned_cols=198 Identities=11% Similarity=0.056 Sum_probs=115.8 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC----- Q ss_conf 999999999679822025998143100267743962799812432532011027843532234402346302113----- Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG----- 136 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~----- 136 (342) +++..+...- ....+++...+..+.+..|.+|++|+.+...... .+ . .....+.+.+...+++.++.. T Consensus 110 ~~l~~~~~~~--P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~-~~---~-~~~~~~l~~~~~~~~~~~~~~l~~~~ 182 (324) T 1al3_A 110 GVIKGFIERY--PRVSLHMHQGSPTQIAEAVSKGNADFAIATEALH-LY---D-DLVMLPCYHWNRSIVVTPEHPLATKG 182 (324) T ss_dssp HHHHHHHHHC--TEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCC-TT---S-CEEEEEEEEECEEEEECTTSTTTTTS T ss_pred HHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCC-CC---C-CEEEEEEEEEEEEEEECCCCHHCCCC T ss_conf 9999999758--9828999979879998667479825886306767-76---6-50589865300579974652210399 Q ss_pred CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH Q ss_conf 47536417862034-313426999999998629985078-7479899999987396029982504799999836780010 Q gi|254780170|r 137 ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH 214 (342) Q Consensus 137 i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~ 214 (342) .-+++||.+..... ..++.....+..++...+...++. .+++...+.+.+.+|.+-++..... . . ...++. . T Consensus 183 ~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lp~~~-~-~---~~~~~~-l 256 (324) T 1al3_A 183 SVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMA-V-D---PVSDPD-L 256 (324) T ss_dssp CCCHHHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTSCEEEEEGGG-C-C---TTTCTT-S T ss_pred CCCHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCEEEECHHHH-H-H---HHHCCC-E T ss_conf 99999996287720489984899999999976998756999999999999999399799725989-7-3---874899-8 Q ss_pred CC--CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH Q ss_conf 02--5644423710100027775799998877443311212330152089886226717788762 Q gi|254780170|r 215 VI--LPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342) Q Consensus 215 ~i--l~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342) +. +++...+-++..+.|++.. ....+++-+..+ +|+ ++..-+++...-..+.++++++ T Consensus 257 v~~~~~~~~~~~~~~l~~r~~~~-~s~~~~~fi~~~--~~~--l~r~~~~~~~~~~~~~~~~~~~ 316 (324) T 1al3_A 257 VKLDANGIFSHSTTKIGFRRSTF-LRSYMYDFIQRF--APH--LTRDVVDTAVALRSNEDIEAMF 316 (324) T ss_dssp EEEECBTTBCCEEEEEEEETTCC-CCHHHHHHHHHH--CTT--CCHHHHHHHHHCCCHHHHHHHH T ss_pred EEEECCCCCCCCEEEEEEECCCC-CCHHHHHHHHHH--HHH--HCHHHHHHHHCCCCHHHHHHHH T ss_conf 99958788865579999969685-699999999999--987--4799898775079979999875 No 74 >1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A Probab=94.87 E-value=0.21 Score=27.82 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=114.3 Q ss_pred HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC Q ss_conf 85794999871789883068898988015099999999996798220259981431002677439627998124325320 Q gi|254780170|r 31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR 110 (342) Q Consensus 31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342) +.+|.+++|+.....- .+-..+..++.+.- ...+++++...+.+.+..|.+|++|+.+....... T Consensus 88 ~~~~~i~~~~~~~~~~-----------~~l~~~~~~~~~~~--p~v~~~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~-- 152 (294) T 1ixc_A 88 GDVGELSVAYFGTPIY-----------RSLPLLLRAFLTST--PTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRH-- 152 (294) T ss_dssp TCCEEEEEEECSGGGG-----------THHHHHHHHHHHHC--TTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCC-- T ss_pred CCCCEEEEECCCCHHH-----------HHHHHHHHHHHHCC--CCCCCCCEEECCHHCCCCCCCCCEEEEEECCCCCC-- T ss_conf 6652378732530799-----------99999999975318--76444304520310032114796468885167778-- Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEEE---ECCCHHHHHHHHHHHCCCCCCEE-EECCHHH Q ss_conf 11027843532234402346302113-----475364178620343---13426999999998629985078-7479899 Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICVQ---AGTTTELTLADYFKAHNMKYHPI-VFERVEE 181 (342) Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v~---~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~ 181 (342) .++.+. +.+.+.-.++++++.. --+++|+.+...... .+++....+.++++..+...+++ .+++... T Consensus 153 ---~~l~~~-~l~~~~~~~~~~~~h~~~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 228 (294) T 1ixc_A 153 ---PGIEIV-NIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATA 228 (294) T ss_dssp ---TTEEEE-EEEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHH T ss_pred ---CCCCCC-CCCCCEEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHH T ss_conf ---754222-0135207999827307653999999998189979963876751467777765324547744688657999 Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCC--CCCCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 99998739602998250479999983678001002--564442371010002777579999887 Q gi|254780170|r 182 IDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVI--LPDIISKSPLAPAIIQGDTEWYNIVSW 243 (342) Q Consensus 182 a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~i--l~e~iskEPlg~avr~gD~~w~d~V~W 243 (342) +.+...+|..-+++.+. ++ ....+ +..+ +++.--.-++..+.+++.. ...++| T Consensus 229 ~~~lv~~g~gia~lp~~--~~----~~~~~-~~~~~~l~~~~~~~~~~li~~~~~~--~p~~~~ 283 (294) T 1ixc_A 229 ALALTMAGAASSIVPAS--VA----AIRWP-DIAFARIVGTRVKVPISCIFRKEKQ--PPILAR 283 (294) T ss_dssp HHHHHHTTSCBEEEEHH--HH----TSCCT-TEEEEEECCTTCEEEEEEEEESSSC--CHHHHH T ss_pred HHHHHHHCCEEEECCHH--HH----HHHCC-CEEEEECCCCCCEEEEEEEEECCCC--CHHHHH T ss_conf 99999949979981088--98----55229-8599977898860389999979999--989999 No 75 >1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Probab=94.48 E-value=0.069 Score=30.86 Aligned_cols=185 Identities=11% Similarity=0.168 Sum_probs=92.4 Q ss_pred HHHHHHHHHH----CCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCC--CCC-CCHHCCCCCCC---------CCCCC Q ss_conf 9999999996----79822025998-14310026774396279981243--253-20110278435---------32234 Q gi|254780170|r 62 DFCRALSSAI----FDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTD--WTL-LREISLGLAFR---------PITYF 124 (342) Q Consensus 62 Dl~raiAaal----~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T--~T~-~Rd~~~~v~Fs---------~~~~~ 124 (342) +=|+.++.+. .+....++-|. .+..+-+.+|..|++|+++-.-. +.. .|+..+..-.+ ..+|| T Consensus 17 ~KC~~l~~~~~a~~~~~~p~~~Cv~~~~~~~C~~~I~~G~AD~~~ld~~~~~~A~~~~~~L~pi~aE~~~~~~~~~~~Y~ 96 (327) T 1ryo_A 17 TKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYY 96 (327) T ss_dssp HHHHHHHHHHHHHSCTTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEEEEEEEECSSSEESEEE T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEE T ss_conf 99999999988632578986699957999999999977998889978699998753458977878872047778851799 Q ss_pred CCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHH--------------------HHHHHHHHHCCCC------CC----- Q ss_conf 4023463021134753641786203431-34269--------------------9999999862998------50----- Q gi|254780170|r 125 DGQGFIMHKKKGISSVSQLSGASICVQA-GTTTE--------------------LTLADYFKAHNMK------YH----- 172 (342) Q Consensus 125 dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e--------------------~~l~~~~~~~~~~------~~----- 172 (342) ...+|++++.+ ++.+|.||+.|-.- |.|.- ..+.+||...=.+ +. T Consensus 97 --aVavVkk~s~~-~~~~LkGKksChtG~~~taGw~~Pv~~l~~~~~~~~~~~~~~v~~fF~~sC~pg~~~~~~~~lC~l 173 (327) T 1ryo_A 97 --AVAVVKKDSGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQL 173 (327) T ss_dssp --EEEEEETTCCC-CGGGCTTCCEEESCTTCTTTTHHHHHHHGGGSCSCCCSHHHHHHHHSSSEECTTSCTTTCGGGGTT T ss_pred --EEEEEECCCCC-CHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf --99999678744-465626995021588885211157889975258888750456787606654678677665421346 Q ss_pred --------EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCC-------------CCCCCCEEEECC Q ss_conf --------78747989999998739602998250479999983678001002564-------------442371010002 Q gi|254780170|r 173 --------PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPD-------------IISKSPLAPAII 231 (342) Q Consensus 173 --------~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e-------------~iskEPlg~avr 231 (342) .-.|-.+..++.-|..|.-|.-....+.+.-.-....++++|.+|=. .+.+.|-..++- T Consensus 174 C~~~~~~~~~~Y~G~~GAlrCL~eg~GDVAFv~~~~v~~~~~~~~~~~dy~llC~dg~~~~~~~~~~C~~~~~P~~~v~~ 253 (327) T 1ryo_A 174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVA 253 (327) T ss_dssp STTCCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCSHHHHTTEEEECTTSCEEEGGGGGGSCSEEEECCEEEE T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 77878898656648077899998589846998541154430354677534118899997455556667510577842798 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 777579999887744331121 Q gi|254780170|r 232 QGDTEWYNIVSWTHYAMVTAE 252 (342) Q Consensus 232 ~gD~~w~d~V~W~~~ali~Ae 252 (342) +.|..+.+.|. ..|..+. T Consensus 254 ~~~~~~~~~i~---~~L~~~~ 271 (327) T 1ryo_A 254 RSMGGKEDLIW---ELLNQAQ 271 (327) T ss_dssp CSSSCCHHHHH---HHHHHHH T ss_pred CCCCCCHHHHH---HHHHHHH T ss_conf 89855089999---9999999 No 76 >2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 Probab=94.27 E-value=0.29 Score=26.94 Aligned_cols=154 Identities=11% Similarity=0.017 Sum_probs=91.5 Q ss_pred CCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEE Q ss_conf 22025998143100267743962799812432532011027843532234402346302113-----4753641786203 Q gi|254780170|r 75 PSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASIC 149 (342) Q Consensus 75 ~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~ 149 (342) ..++.++..+..+....|.+|++|+.+...... .+ ...++.+. +.+.+.-.++++++.. +....+++..-+. T Consensus 129 ~~~~~~~~~~~~~~~~~l~~g~~D~ai~~~~~~-~~-~~~~l~~~-~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 205 (310) T 2esn_A 129 GVRLRLVNAERKLSVEALASGRIDFALGYDEEH-ER-LPEGIQAH-DWFADRYVVVARRDHPRLAGAPTLEGYLAERHAV 205 (310) T ss_dssp TCEEEEECCSSSCCHHHHHHTSSSEEEECCSTT-CC-CCTTEEEE-EEEEECEEEEEESSCTTCSSSCCHHHHHTSEEEE T ss_pred CCCCEEECCCCHHHHHHHCCCCCCEEEEECCCC-CC-CCCCCEEE-EEEEEEEEEECCCCCHHHCCCCCHHHHHCCCCEE T ss_conf 632112115503332221057740589824765-55-77774268-8245447873277884235999978981398189 Q ss_pred EEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC--CE Q ss_conf 431342699999999862998507-874798999999873960299825047999998367800100256444237--10 Q gi|254780170|r 150 VQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS--PL 226 (342) Q Consensus 150 v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE--Pl 226 (342) +.........+.+++...+...++ +..++...+...+.+|..=++.-+. .+... .+-....++|-++... ++ T Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~i~~~~~s~~~~l~~v~~g~~i~~lP~~---~~~~~--~~~~~l~~~~~p~~~~~~~i 280 (310) T 2esn_A 206 VTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRH---AARAL--AEAAGLALYPAPFDIPPYVL 280 (310) T ss_dssp ECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTSSCEEEEEHH---HHHHH--HHHHTEEEECCSSCCCCEEE T ss_pred EECCCCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCEEEHHHHH---HHHHH--HHCCCEEEECCCCCCCCEEE T ss_conf 83798862377789997499987259969899999999939978836899---99988--55599799828989986689 Q ss_pred EEEC---CCCCHH Q ss_conf 1000---277757 Q gi|254780170|r 227 APAI---IQGDTE 236 (342) Q Consensus 227 g~av---r~gD~~ 236 (342) ..+. +++|+. T Consensus 281 ~l~~h~~~~~~p~ 293 (310) T 2esn_A 281 RLYSHVQHVGRDA 293 (310) T ss_dssp EEEEECC--CCHH T ss_pred EEEECCCCCCCHH T ss_conf 9998988779989 No 77 >1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H* Probab=94.25 E-value=0.13 Score=29.20 Aligned_cols=133 Identities=21% Similarity=0.077 Sum_probs=80.1 Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCH Q ss_conf 02599814310026774396279981243253201102784353223440234630211347536417862034313426 Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTT 156 (342) Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~ 156 (342) .+++.-+-..+....+..|-+|+.+.+.-|-.|.+.....-..-.+-..-..+.++++..+.+ ..++|+ |.+ T Consensus 39 ~i~i~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~v~~~~~L~~g~c~l~vA~p~~~~~~~----~~~rIA----TkY 110 (219) T 1o63_A 39 DIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGRGIPE----GEKRIA----TKF 110 (219) T ss_dssp TEEEEEECGGGHHHHHHTTSCSEEEEEHHHHHHSCCCCBCCSEEEEEEEEEEEEEETTTCCCS----SCEEEE----ESC T ss_pred CEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCEEEEEECCCCCCCCC----CCCEEE----EHH T ss_conf 969999788999999984998646550777754336523553145550247862154456555----562653----221 Q ss_pred HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC Q ss_conf 99999999862998507874798999999873960299825047999998367800100256444237 Q gi|254780170|r 157 ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS 224 (342) Q Consensus 157 e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE 224 (342) ....++||+.++++++++......|. |...|-+|+++.=.+.=..++. +..+++.+.+... T Consensus 111 pnit~~ff~~~gi~~~ii~l~GavE~--Ap~~G~AD~IVDivsTG~TLk~-----N~Lk~i~~il~ss 171 (219) T 1o63_A 111 PNVTQRYCESKGWHCRIIPLKGSVEL--APIAGLSDLIVDITETGRTLKE-----NNLEILDEIFVIR 171 (219) T ss_dssp HHHHHHHHHHHTCCEEEEECSSCTTH--HHHHTSCSEEEEEESSSHHHHH-----TTEEEEEEEEEEE T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCEEEEEEEECCHHHHHH-----CCCEECCEEEEEE T ss_conf 44999999983993489975697767--8889832178888357588998-----7899830176217 No 78 >2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Probab=94.24 E-value=0.18 Score=28.21 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=65.4 Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC--HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEEC Q ss_conf 20259981431002677439627998124325320--1102784353223440234630211347536417862034313 Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR--EISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAG 153 (342) Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R--d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~G 153 (342) ..++++..+.++.-..+..|++|+..-+ ++..-| +.-.-+. +....-.++++++-.+ ..+++|+|++|++... T Consensus 30 ~~~~~~~~~p~~LN~~l~~g~~Dv~~iS-s~~y~~~~~~y~llp-siss~G~v~sv~l~s~---~p~~~l~~~~Ial~~~ 104 (272) T 2czl_A 30 VPLEPVLEDVETLNRWALEGRLPLTKLS-YAAYAQVRDRYVALR-SGGALGRGVGPLVVAR---GPLQALEGLRVAVPGR 104 (272) T ss_dssp SCEEEEECCHHHHHHHHHTTCCSEEEEE-HHHHTTCTTTEEECS-SSCEEESSCCCEEEES---SCCSCCTTCEEEESCT T ss_pred CCCEEEECCHHHHHHHHHCCCCCEEEHH-HHHHHHCCCCEEECC-CEEECCCCCCEEEEEC---CCHHHCCCCEEEECHH T ss_conf 8516853799999999984999886060-999972727687837-4664589767599936---9845516985974717 Q ss_pred CCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE--EECCH Q ss_conf 42699999999862998507874798999999873960299--82504 Q gi|254780170|r 154 TTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY--TGDIS 199 (342) Q Consensus 154 TT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~--~~D~s 199 (342) |+|-.+|-..+-......+ ....+...++..|++||. ++|.. T Consensus 105 s~TS~~Llrill~~~~~~~----~~~~~~~~~~~~~~~da~LlIGD~A 148 (272) T 2czl_A 105 HTTAYFLLSLYAQGFVPVE----VRYDRILPMVAQGEVEAGLIIHESR 148 (272) T ss_dssp TSHHHHHHHHHCSSCEEEE----CCGGGHHHHHHTTSSSEEEECTTHH T ss_pred HHHHHHHHHHHHHHCCCCC----CCCCCCCCHHHCCCCCEEEECCHHH T ss_conf 7789999999997567655----7701467444438877236607177 No 79 >2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1 Probab=94.23 E-value=0.29 Score=26.89 Aligned_cols=181 Identities=10% Similarity=0.081 Sum_probs=111.9 Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342) .+|.||+|+......+ +=.++...+.+. . ...++++...+..+....|.+|++|+.+...... . T Consensus 12 ~~G~lrIg~~~~~a~~-----------~Lp~~l~~f~~~-~-P~i~l~i~~~~~~~l~~~L~~g~~D~ai~~~~~~--~- 75 (228) T 2fyi_A 12 TSGVLTIATTHTQARY-----------SLPEVIKAFREL-F-PEVRLELIQGTPQEIATLLQNGEADIGIASERLS--N- 75 (228) T ss_dssp CCEEEEEEECHHHHHH-----------THHHHHHHHHHH-C-TTEEEEEEECCHHHHHHHHHHTSCSEEEESSSST--T- T ss_pred CCCEEEEEEEHHHHHH-----------HHHHHHHHHHHH-C-CCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCC--C- T ss_conf 9717999975889999-----------999999999998-8-9948999967659999998668833233311235--6- Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH Q ss_conf 102784353223440234630211-----3475364178620343-13426999999998629985078-7479899999 Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342) Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342) ..++.+ .+.+.+...++++++. ..-++.||.+..+.+. .++.....+.+++...+...+++ .+++...+.. T Consensus 76 -~~~~~~-~~l~~~~~~~v~~~~~~~~~~~~i~~~dL~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (228) T 2fyi_A 76 -DPQLVA-FPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKT 153 (228) T ss_dssp -CTTEEE-EEEEEECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHH T ss_pred -CCCCEE-EEEEECCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHH T ss_conf -865336-773203430113564200034444478872597212689981788899876503877753478478999999 Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHH Q ss_conf 9873960299825047999998367800100256--444237101000277757 Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTE 236 (342) Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~ 236 (342) .+.+|..=++..+.. + ....++ ..+.+| +...+-++..+.+++... T Consensus 154 ~v~~g~gi~~lp~~~--~---~~~~~~-~lv~l~~~~~~~~~~~~l~~~~~~~~ 201 (228) T 2fyi_A 154 YVALGLGIGLVAEQS--S---GEQEEE-NLIRLDTRHLFDANTVWLGLKRGQLQ 201 (228) T ss_dssp HHHHTSCEEEEEGGG--G---STTCCT-TEEEECCTTTSCCEEEEEEEETTCCB T ss_pred HHHCCCEEEECCHHH--H---HHHHCC-CEEEEECCCCCCCEEEEEEEECCCCC T ss_conf 986599999863999--8---565459-98999687777640899999896867 No 80 >3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Probab=94.12 E-value=0.038 Score=32.55 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=40.0 Q ss_pred CCCEEECCCCCEEEEH-----HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC Q ss_conf 8830688989880150-----9999999999679822025998143100267743962799812 Q gi|254780170|r 45 VGFAEVKANGDWKGFD-----VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN 103 (342) Q Consensus 45 ppfs~~d~~G~~~GfD-----VDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~ 103 (342) +-.+..|-+|+-.|+- --+.+...+.-+.++.++++++.... ...+|.+|++|.++.. T Consensus 97 ~i~~~~DLkGK~v~~~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~~~-~~~al~~G~iDa~~~~ 159 (302) T 3ix1_A 97 DFDSPADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFE-LGASIVSGRADAVVGT 159 (302) T ss_dssp CCSSGGGGTTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTC-HHHHHHHSSSSEEEEE T ss_pred CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC-HHHHHHCCCCCEECCC T ss_conf 98887895676221789977899999999972899761178458843-8999985997700065 No 81 >3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus} Probab=94.12 E-value=0.31 Score=26.75 Aligned_cols=171 Identities=10% Similarity=-0.043 Sum_probs=96.6 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) +|++++|+..... ..+=..+++.+.+.-- ...+++.+.+..+....|..|++|+.+........ T Consensus 18 ~~~~rI~~~~~~~-----------~~~lp~ll~~l~~~~P--~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~~~~~~--- 81 (241) T 3oxn_A 18 DQTFTIATTDYAM-----------QTILPFALPRIYQEAP--NVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVE--- 81 (241) T ss_dssp CCEEEEEECSHHH-----------HHTHHHHHHHHHHHCT--TCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCT--- T ss_pred CCEEEEEECHHHH-----------HHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCC--- T ss_conf 8689999737999-----------9999999999999886--92899997987999999975985422202678741--- Q ss_pred CCCCCCCCCCCCCCEEEEEECCCC----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCC-EEEECCHHHHHHHH Q ss_conf 027843532234402346302113----47536417862-0343134269999999986299850-78747989999998 Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKKG----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYH-PIVFERVEEIDAAY 186 (342) Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~~----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~-~v~~~~~~~a~~al 186 (342) .+.+ .+.+-+.-.++++++.. --+++|+.... |.+..+......+..++.. +..-+ .+..++...+...+ T Consensus 82 --~l~~-~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~lv 157 (241) T 3oxn_A 82 --PLRS-EILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALID-KPQRKMVLRAYHLEAALAIV 157 (241) T ss_dssp --TEEE-EEEECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTT-SCCCEEEEECSSTHHHHHHC T ss_pred --CCCC-CCCCCCCCEEECCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHH-CCCCCCEEEECCHHHHHHHH T ss_conf --0113-5432236402237665032025889999529869995799862399999996-79998559967899999999 Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEE Q ss_conf 739602998250479999983678001002564442371010 Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAP 228 (342) Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~ 228 (342) ..|..=+++... ++... .+....+++|-++...|+-. T Consensus 158 ~~~~~i~ilP~~--~~~~~---~~~~~L~~~plp~~~p~~~~ 194 (241) T 3oxn_A 158 DTLPIIITVPAD--LAYLV---AERYDLVVKPLPFQFTPFDY 194 (241) T ss_dssp --CCCEEEEEHH--HHHHH---HHHTTEEEECCSSCCCCCCE T ss_pred HCCCEEEEHHHH--HHHHH---HHCCCEEEECCCCCCCCEEE T ss_conf 759979987999--99988---65399699848999897689 No 82 >3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Probab=94.09 E-value=0.31 Score=26.72 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=82.8 Q ss_pred CCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC-CCCCEEEEE-ECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHH Q ss_conf 002677439627998124325320110278435322-344023463-0211347536417-8620343134269999999 Q gi|254780170|r 87 ERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT-YFDGQGFIM-HKKKGISSVSQLS-GASICVQAGTTTELTLADY 163 (342) Q Consensus 87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~-~~dgq~~lV-rk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~ 163 (342) +.-.+|.+|++|+.+.++---+... ..++....+. =-|..-++| +++...+++.+|. |.+|+ |++-.- +.+ T Consensus 83 ele~aLl~g~iDiAVHSlKDlP~~~-~~gl~i~a~~~R~dprD~lv~~~~~~~~~l~~lp~ga~IG----TSS~RR-~aq 156 (364) T 3ecr_A 83 ELEHALEKNEVDLVVHSLKDLPTVL-PPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVG----TSSLRR-AAQ 156 (364) T ss_dssp HHHHHHHTTSCSEEEEEGGGSCSSC-CTTEEEEEECCCCCCCEEEEECTTCTTCCTTTSCTTCEEE----CCCHHH-HHH T ss_pred HHHHHHHCCCCCEEEECCCCCCCCC-CCCCCEECCCCCCCCCCEEEECCCCCCCCHHHCCCCCEEE----CCCHHH-HHH T ss_conf 9999996499888987256577645-7876211234779825468865630000274579988860----372679-999 Q ss_pred HHHCCCCCCEEEECCHH-HHHHHHH-CCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCC----CCCCEEEECCCCCHHH Q ss_conf 98629985078747989-9999987-3960299825047999998367800100256444----2371010002777579 Q gi|254780170|r 164 FKAHNMKYHPIVFERVE-EIDAAYR-AHRCDAYTGDISALYALKLTNDRPSEHVILPDII----SKSPLAPAIIQGDTEW 237 (342) Q Consensus 164 ~~~~~~~~~~v~~~~~~-~a~~al~-~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~i----skEPlg~avr~gD~~w 237 (342) ++...++.+++.+..+- .-+..|. .|..||++--...| .|..+.+.-.+.+-|+.+ ..--+|+-.|++|.+. T Consensus 157 l~~~~pdl~i~~iRGNIdTRl~KL~~~ge~DaiILA~AGl--~RLgl~~~~~~~l~~~~~~PA~gQGaiaie~r~~d~~~ 234 (364) T 3ecr_A 157 LQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGL--QRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDI 234 (364) T ss_dssp HHHHCTTSEEECCCSCHHHHHHHHHHSSSCSEEEEEHHHH--HHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHH T ss_pred HHHHCCCCCEEECCCCHHHHHHHHHCCCCCCEEEEHHHHH--HHHHHHHCCCCCCCHHHCCCCCCCCEEEEEEECCCHHH T ss_conf 9886772624532587999999863348731897656677--77664220231468566176545202799980577888 Q ss_pred HHHHH Q ss_conf 99988 Q gi|254780170|r 238 YNIVS 242 (342) Q Consensus 238 ~d~V~ 242 (342) .++++ T Consensus 235 ~~ll~ 239 (364) T 3ecr_A 235 LDLVG 239 (364) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99988 No 83 >2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D Probab=93.76 E-value=0.11 Score=29.52 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=34.3 Q ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHH---HCCCCCCCCCCCEEEECCCCCHH Q ss_conf 999998629985078747989999998739602998250479999983678001---00256444237101000277757 Q gi|254780170|r 160 LADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSE---HVILPDIISKSPLAPAIIQGDTE 236 (342) Q Consensus 160 l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~---~~il~e~iskEPlg~avr~gD~~ 236 (342) +.++++...++ -+...++......|+ | +.=++.+.-..||+. ++--.+....+|+-++. .. T Consensus 110 a~~~l~~~~~t-----~~~~~~l~~~i~~g~------~-~~~aA~~Wl~~n~~~v~~Wl~g~~~~~~~~i~i~~----~~ 173 (268) T 2b4l_A 110 AAKLLSQFKWT-----QDEMGEIMIKVEEGE------K-PAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLAY----VA 173 (268) T ss_dssp HHHHHHTCCCC-----HHHHHHHHHHHHTTC------C-HHHHHHHHHHHCHHHHHHHTTTCCCCSSCEEEEEE----CC T ss_pred HHHHHHHCCCC-----HHHHHHHHHHHHCCC------C-HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEE----CC T ss_conf 99999974889-----999999999998599------9-99999999997929999885165467777515642----48 Q ss_pred HHHHHHHHHHHHHHHHHHHCCH Q ss_conf 9999887744331121233015 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQ 258 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~ 258 (342) |-+..-=+.-+-...|++|.+- T Consensus 174 W~~~~a~t~v~~~iLe~~Gy~V 195 (268) T 2b4l_A 174 WDSEIASTNVIGKVLEDLGYEV 195 (268) T ss_dssp CHHHHHHHHHHHHHHHHHTCEE T ss_pred CCHHHHHHHHHHHHHHHCCCCE T ss_conf 7618999999999999869953 No 84 >2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Probab=93.56 E-value=0.28 Score=27.02 Aligned_cols=53 Identities=15% Similarity=0.015 Sum_probs=37.4 Q ss_pred CCCCCEEEEH----HH-HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC Q ss_conf 8989880150----99-99999999679822025998143100267743962799812 Q gi|254780170|r 51 KANGDWKGFD----VD-FCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN 103 (342) Q Consensus 51 d~~G~~~GfD----VD-l~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~ 103 (342) |-+|+-.|+. .+ +++.+.+.-+.++.+|+++.+...+...+|.+|++|..+.. T Consensus 102 DLkGK~Iav~~g~~~~~~~~~~L~~~Gl~~~dv~~v~~~~~~~~~al~~g~vda~~~~ 159 (308) T 2x26_A 102 DLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIW 159 (308) T ss_dssp GGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSEEEEE T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEC T ss_conf 9469722335886589999999998399842447630582567777642255489963 No 85 >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A Probab=93.46 E-value=0.41 Score=26.01 Aligned_cols=196 Identities=8% Similarity=0.012 Sum_probs=119.1 Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342) .+|.|++|+....... +-.++..++...- ....++++..+..+.+..|.+|++|+.+...... .. T Consensus 90 ~~~~l~I~~~~~~~~~-----------~l~~~i~~~~~~~--p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~-~~- 154 (305) T 3fxq_A 90 WEGHITFAASPAIALA-----------ALPLALASFAREF--PDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKH-DI- 154 (305) T ss_dssp HHTEEEEEECHHHHHT-----------HHHHHHHHHHHHC--TTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGG-GS- T ss_pred CCCEEEEEECCCHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCC-CC- T ss_conf 6625999624630276-----------7899999999978--9976765744817777787559734899840554-35- Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC---CCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCC-CCE-EEECCHHHHHHH Q ss_conf 1027843532234402346302113---475364178620343-1342699999999862998-507-874798999999 Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG---ISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMK-YHP-IVFERVEEIDAA 185 (342) Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~---i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~-~~~-v~~~~~~~a~~a 185 (342) ...+.+ .+.+.+...++++++.. ..++++|.....+.. .++..-..+.++++..++. ..+ ..+++....... T Consensus 155 -~~~l~~-~~l~~~~~~~~~~~~hpl~~~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 232 (305) T 3fxq_A 155 -DTDLEA-QPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGV 232 (305) T ss_dssp -CTTEEE-EEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHH T ss_pred -CCCCEE-EECCCCCEEEEECCCCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH T ss_conf -688437-871444179998688845689895675302145523776531257789997198632233333679999999 Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC---HHHHHHHHHHHHHHH Q ss_conf 873960299825047999998367800100256--4442371010002777---579999887744331 Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD---TEWYNIVSWTHYAMV 249 (342) Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD---~~w~d~V~W~~~ali 249 (342) +.+|..-++..+.. + ......++.+.+| +..-..++..+.+++- +.-..+++|.-.-.. T Consensus 233 v~~g~gi~~lp~~~--~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~ 296 (305) T 3fxq_A 233 VAHSDLLTTMPRTL--Y---ERNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL 296 (305) T ss_dssp HHTSSCEEEEEHHH--H---HSSTTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC T ss_pred HHCCCEEEECCHHH--H---HHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 97499899811999--9---8551379989996888887768999998969889999999999999999 No 86 >1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Probab=93.38 E-value=0.42 Score=25.93 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=81.9 Q ss_pred CCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC-CCCCEEEEEECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHHH Q ss_conf 002677439627998124325320110278435322-3440234630211347536417-86203431342699999999 Q gi|254780170|r 87 ERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT-YFDGQGFIMHKKKGISSVSQLS-GASICVQAGTTTELTLADYF 164 (342) Q Consensus 87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~-~~dgq~~lVrk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~~ 164 (342) +.-.+|.+|++|+.+.++---+... ..++..+.+. =-|..-+++.+ ...++.+|. |.+|| |++-.- +..+ T Consensus 65 ele~aLl~g~iDiAVHSlKDlP~~~-~~gl~i~av~~R~d~rD~li~~--~~~~l~~lp~g~~IG----TsS~RR-~aql 136 (313) T 1gtk_A 65 ELEVALLENRADIAVHSMKDVPVEF-PQGLGLVTICEREDPRDAFVSN--NYDSLDALPAGSIVG----TSSLRR-QCQL 136 (313) T ss_dssp HHHHHHHTTSCSEEEEEGGGSCSCC-CTTEEEEEECCCCCCCEEEECS--SCSSGGGCCTTCEEE----CCCHHH-HHHH T ss_pred HHHHHHHCCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCHHHHHCCC--CCCCHHHCCCCCEEE----CCCHHH-HHHH T ss_conf 9999986387648975136577546-9985699995678888875037--635562489989883----188889-9999 Q ss_pred HHCCCCCCEEEECC-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC-CCCC----CCCCEEEECCCCCHHHH Q ss_conf 86299850787479-899999987396029982504799999836780010025-6444----23710100027775799 Q gi|254780170|r 165 KAHNMKYHPIVFER-VEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL-PDII----SKSPLAPAIIQGDTEWY 238 (342) Q Consensus 165 ~~~~~~~~~v~~~~-~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il-~e~i----skEPlg~avr~gD~~w~ 238 (342) +...++.+++.+.. .+.-+..|.+|++||++--...| .|..+...- +.++ ++.+ ..--+|+-.|++|++.. T Consensus 137 ~~~~pdl~i~~iRGNVdTRl~KL~~g~~DaiILA~AGl--~RLgl~~~~-~~~l~~~~~~PA~gQGaiave~r~~d~~~~ 213 (313) T 1gtk_A 137 AERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGL--KRLGLESRI-RAALPPEISLPAVGQGAVGIECRLDDSRTR 213 (313) T ss_dssp HHHCTTSEEECCCSCHHHHHHHHHTTSCSEEEEEHHHH--HHTTCGGGC-SEECCTTTSCCCTTTTCEEEEEETTCHHHH T ss_pred HHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEECCHH--CCCCCCCCC-EEECCCHHCCCCCCCCEEEEEECCCCHHHH T ss_conf 98689993775647699999997678977898640012--101211330-486160204664100125665517858899 Q ss_pred HHHH Q ss_conf 9988 Q gi|254780170|r 239 NIVS 242 (342) Q Consensus 239 d~V~ 242 (342) +++. T Consensus 214 ~~l~ 217 (313) T 1gtk_A 214 ELLA 217 (313) T ss_dssp HHHG T ss_pred HHHH T ss_conf 9998 No 87 >3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus} Probab=93.23 E-value=0.1 Score=29.83 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=42.8 Q ss_pred CCEEEEECCCHHHH--H-HHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEE-CCHHHHH Q ss_conf 62034313426999--9-999986299850787479899999987396029982-5047999 Q gi|254780170|r 146 ASICVQAGTTTELT--L-ADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTG-DISALYA 203 (342) Q Consensus 146 ~~I~v~~GTT~e~~--l-~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~-D~s~La~ 203 (342) .|||...+...... . +.++++.|++++.+.|.+..++++||.+|++|+... ..+.+.. T Consensus 8 irvG~~~~~~~~~~~~~~k~~~e~~Gl~Ve~~~f~~g~~~~~Al~~G~iD~~~~g~~~~~~~ 69 (237) T 3k2d_A 8 VKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDR 69 (237) T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHH T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHH T ss_conf 89996079859999999777898669889999808825689999769977787545789986 No 88 >3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis} Probab=92.77 E-value=0.079 Score=30.49 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=53.4 Q ss_pred CCEEEEECCCHHH---HHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE-EECCHHHHHHHHHCCCCHHHCCCCCCC Q ss_conf 6203431342699---999999862998507874798999999873960299-825047999998367800100256444 Q gi|254780170|r 146 ASICVQAGTTTEL---TLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY-TGDISALYALKLTNDRPSEHVILPDII 221 (342) Q Consensus 146 ~~I~v~~GTT~e~---~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~-~~D~s~La~~~~~~~~p~~~~il~e~i 221 (342) .+||+..|.-.+. .++..+++.|++.+++.|+++.+.-.||.+|++|+- ....+-|...... +..+.+.+. .+ T Consensus 3 i~vg~~~~p~~~~~~e~vk~~~k~~Gi~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~~--~g~~L~~v~-~~ 79 (245) T 3ir1_A 3 IVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKE--HNLDITEVF-QV 79 (245) T ss_dssp EEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHH--HTCCEEEEE-EC T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHHH--CCCCEEEEE-EE T ss_conf 999807898799999998899996597699999568521779986699652312279999999998--599669986-65 Q ss_pred CCCCEEEE Q ss_conf 23710100 Q gi|254780170|r 222 SKSPLAPA 229 (342) Q Consensus 222 skEPlg~a 229 (342) -.+|+|+. T Consensus 80 ~~~p~glY 87 (245) T 3ir1_A 80 PTAPLGLY 87 (245) T ss_dssp CBCCCEEE T ss_pred EECCEEEE T ss_conf 44242765 No 89 >2vd2_A ATP phosphoribosyltransferase; HISG, cytoplasm, glycosyltransferase, histidine biosynthesis, amino-acid biosynthesis; 2.85A {Bacillus subtilis} Probab=92.58 E-value=0.33 Score=26.54 Aligned_cols=129 Identities=14% Similarity=0.076 Sum_probs=77.2 Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCC----CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE Q ss_conf 02599814310026774396279981243253201102----78435322344023463021134753641786203431 Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISL----GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA 152 (342) Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~----~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~ 152 (342) .+++.-+-..+.-..+..|.+|+.+.+.-|-.|.+... .+.|... ...+.++.+....+ .+++|+ T Consensus 48 ~i~~~~~r~~DIp~~v~~G~~DlGI~G~D~l~E~~~~v~~l~dLg~G~c----~l~vA~p~~~~~~~----~~~rIA--- 116 (214) T 2vd2_A 48 NLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKC----HLAVAGLPNTDWSG----VAPRIA--- 116 (214) T ss_dssp TEEEEEECTTHHHHHHHHTSSSEEECCTHHHHSCSCSSEEEEECTTSCC----EEEEEECTTCCCCS----SSCEEE--- T ss_pred CEEEEEECCCCHHHHHHCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCE----EEEEEECCCCCCCC----CCCEEE--- T ss_conf 8799996522199999759988134774662430146657886466748----99997348633245----455776--- Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC Q ss_conf 342699999999862998507874798999999873960299825047999998367800100256444237 Q gi|254780170|r 153 GTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS 224 (342) Q Consensus 153 GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE 224 (342) |.+....++||.++|++++++......|. |...|-+|+++.=.+. -.++.. +..+++.+.+... T Consensus 117 -TkYp~it~~ff~~~gi~~~iv~~~GsvE~--ap~~g~AD~IvDiv~T----G~TLk~-N~L~~i~~il~ss 180 (214) T 2vd2_A 117 -TKYPNVASSYFREQGEQVEIIKLNGSIEL--APLIGLADRIVDIVST----GQTLKE-NGLVETEHICDIT 180 (214) T ss_dssp -ESCHHHHHHHHHHHCCCCEEEECCSCTTH--HHHTTSCSEEEEEECC----SSSSCT-TSCEEEEEEEECC T ss_pred -EHHHHHHHHHHHHCCCCEEEEECCCHHHC--CCCCCCCCEEEEEECC----HHHHHH-CCCEEEEEEEEEE T ss_conf -40254899999984997269975283115--6899961289976077----588998-7899744576678 No 90 >3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Probab=92.57 E-value=0.34 Score=26.52 Aligned_cols=56 Identities=14% Similarity=0.047 Sum_probs=39.2 Q ss_pred EEECCCCCEEEEHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC Q ss_conf 06889898801509-----999999999679822025998143100267743962799812 Q gi|254780170|r 48 AEVKANGDWKGFDV-----DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN 103 (342) Q Consensus 48 s~~d~~G~~~GfDV-----Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~ 103 (342) +..|=+|+-.|+.. .+...+.++-+.++.+|+++.++..+...+|++|++|..+.. T Consensus 125 s~~DLkGK~v~v~~gs~~~~~l~~~L~~~Gl~~~dV~~v~~~~~~~~~al~~G~vDa~~~~ 185 (324) T 3ksx_A 125 TVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIW 185 (324) T ss_dssp SGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTCCSEEEEE T ss_pred CHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCEEEEC T ss_conf 9789389989875687306799999998799732354012582666666531350099981 No 91 >1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A Probab=92.00 E-value=0.13 Score=29.17 Aligned_cols=179 Identities=9% Similarity=0.057 Sum_probs=105.8 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) +|.|++|+.+....+ +=.++.+.+.++- - ..++++...++.+.+..|.+|++|+.+..... . T Consensus 4 ~G~lrIg~~~~~~~~-----------~lp~~l~~f~~~~-P-~v~i~i~~~~~~~l~~~l~~~~~d~~~~~~~~---~-- 65 (219) T 1i6a_A 4 SGPLHIGLIPTVGPY-----------LLPHIIPMLHQTF-P-KLEMYLHEAQTHQLLAQLDSGKLDAVILALVK---E-- 65 (219) T ss_dssp CEEEEEEECTTTHHH-----------HHHHHHHHHHHHC-T-TEEEEEEECCHHHHHHHHHHTSCSEEEEECCG---G-- T ss_pred EEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC-C-CCEEEEEECCCHHHHHHHHCCCCHHHHCCCCC---C-- T ss_conf 189999837779999-----------9999999999988-8-96899998884888888753640101023553---2-- Q ss_pred CCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHH Q ss_conf 027843532234402346302113-----475364178620343-13426999999998629985078-74798999999 Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAA 185 (342) Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~a 185 (342) ..++.+. +.+.+...++++++.. .-+++||....+... .+......+..++.+.+...+++ .+++...+... T Consensus 66 ~~~~~~~-~l~~~~~~~v~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 144 (219) T 1i6a_A 66 SEAFIEV-PLFDEPMLLAIYEDHPWANREAVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNM 144 (219) T ss_dssp GTTSEEE-EEEEEEEEEEEETTSGGGGCSCEEGGGGTTSEEECCTTTTCSSCTTSSCSSCTTSEEECTTTTSCHHHHHHH T ss_pred CCCCCCC-CCCCCCEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH T ss_conf 3453234-344553699992597111699989899804768984587531567778999738998704774899999999 Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH Q ss_conf 873960299825047999998367800100256--44423710100027775 Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT 235 (342) Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~ 235 (342) ..+|..=++.-+... . .....+..+.+| +..-+-+++.+.|++.+ T Consensus 145 v~~g~gi~~lp~~~~----~-~~~~~~~l~~l~~~~~~~~~~~~lv~~~~~~ 191 (219) T 1i6a_A 145 VAAGSGITLLPALAV----P-PERKRDGVVYLPAIKPEPRRTIGLVYRPGSP 191 (219) T ss_dssp HHTTSCBEEEEGGGS----C-SSSEETTEEEECEESSCCEEEEEEEECTTCT T ss_pred HHHCCEEEEECHHHH----H-HHHHCCCEEEEECCCCCCEEEEEEEEECCCC T ss_conf 980998999038999----7-5510798899988899853599999979196 No 92 >1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A* Probab=91.59 E-value=0.27 Score=27.15 Aligned_cols=170 Identities=13% Similarity=0.183 Sum_probs=91.4 Q ss_pred HHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECC--CCCCC-CHHCCC-CCC--------CCCCCCCCEE Q ss_conf 9999999996798220259981-431002677439627998124--32532-011027-843--------5322344023 Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNT--DWTLL-REISLG-LAF--------RPITYFDGQG 128 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~--T~T~~-Rd~~~~-v~F--------s~~~~~dgq~ 128 (342) .=|..++++.-.....++-|.. +..+-+.+++.|+.|+++-.- -++.. ++..+. +-. ..++|| .. T Consensus 18 ~KC~~m~~~~~~~~~~i~Cv~~~s~~~C~~~I~~g~AD~~~ld~~~vy~A~~~~~~L~pi~~E~y~~~~~~~~~y~--av 95 (332) T 1iej_A 18 KKCNNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYY--AV 95 (332) T ss_dssp HHHHHHHHHTTTSSEEEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEEEEEEECSSSEESEEE--EE T ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEE--EE T ss_conf 9999999986215987698858999999999976998889978599888532536888757621037788843789--99 Q ss_pred EEEECCCCCCCHHHHCCCCEEEEE-CCCH-------------------------HHHHHHHHHHC---C----------- Q ss_conf 463021134753641786203431-3426-------------------------99999999862---9----------- Q gi|254780170|r 129 FIMHKKKGISSVSQLSGASICVQA-GTTT-------------------------ELTLADYFKAH---N----------- 168 (342) Q Consensus 129 ~lVrk~~~i~s~~dL~G~~I~v~~-GTT~-------------------------e~~l~~~~~~~---~----------- 168 (342) .+|++++.+ ++.+|.||+.|-.- |.|. +..+.+||.+. | T Consensus 96 avvkk~s~~-~~~~L~GkksCHtG~~~taGw~~Pv~~L~~~~~i~~~~~~~~~~~~~~~~FF~~sC~PG~~~~~~lC~lC 174 (332) T 1iej_A 96 AVVKKGTEF-TVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQC 174 (332) T ss_dssp EEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCCGGGCCHHHHHHHHSSEEECTTCCSCGGGGTTC T ss_pred EEEECCCCC-CHHHHCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 999468865-4666358850304899874047999999866887765788644889999860145123666775410147 Q ss_pred ----CC--CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC-------------CCCCCEEEE Q ss_conf ----98--50787479899999987396029982504799999836780010025644-------------423710100 Q gi|254780170|r 169 ----MK--YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI-------------ISKSPLAPA 229 (342) Q Consensus 169 ----~~--~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~-------------iskEPlg~a 229 (342) .. -.--.|-.+..|++-|..|.-|.-....+.+.- ....++++|.+|=.- +.+-|-..+ T Consensus 175 ~g~~~~~c~~~~~Y~Gy~GA~rCL~eg~GDVAFvk~~tv~~--~~~~~~~d~~lLC~dg~~~~~~~~~~C~l~~~P~~~v 252 (332) T 1iej_A 175 KGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNE--NAPDQKDEYELLCLDGSRQPVDNYKTCNWARVAAHAV 252 (332) T ss_dssp CSCTTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHH--HCTTSGGGEEEECTTSCEEEGGGTTTSCSEEEECCEE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECHHHHH--HCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCEE T ss_conf 89887768988867562017999974997479986421443--0445555414587789816755686674125777437 Q ss_pred CCCCCHH Q ss_conf 0277757 Q gi|254780170|r 230 IIQGDTE 236 (342) Q Consensus 230 vr~gD~~ 236 (342) +.+.|.. T Consensus 253 v~r~d~~ 259 (332) T 1iej_A 253 VARDDNK 259 (332) T ss_dssp EECSSTT T ss_pred EECCCCC T ss_conf 9888622 No 93 >2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A* Probab=91.45 E-value=0.73 Score=24.38 Aligned_cols=166 Identities=11% Similarity=0.029 Sum_probs=101.4 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC---- Q ss_conf 9999999999679822025998143100267743962799812432532011027843532234402346302113---- Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG---- 136 (342) Q Consensus 61 VDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~---- 136 (342) ..+..++.+.- ...++++...+..+.+..|.+|++|+.+...... ...+.+ .+.+.+...++++++.. T Consensus 106 ~~~l~~~~~~~--p~v~l~~~~~~~~~l~~~l~~g~~Dlai~~~~~~-----~~~~~~-~~l~~~~~~~~~~~~~~l~~~ 177 (312) T 2h9b_A 106 PRIIHLYRQAH--PNLRIELYEMGTKAQTEALKEGRIDAGFGRLKIS-----DPAIKH-SLLRNERLMVAVHASHPLNQM 177 (312) T ss_dssp HHHHHHHHHTC--TTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCC-----CTTEEE-EEEEEEEEEEEEETTSGGGGG T ss_pred HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC-----CCCCEE-EEECCCEEEEEECCCCHHHHC T ss_conf 99999999978--9977853135507799999769964799606889-----876179-981130599996378846653 Q ss_pred ---CCCHHHHCCCCEEEE---ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC Q ss_conf ---475364178620343---13426999999998629985078-74798999999873960299825047999998367 Q gi|254780170|r 137 ---ISSVSQLSGASICVQ---AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTND 209 (342) Q Consensus 137 ---i~s~~dL~G~~I~v~---~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~ 209 (342) ..+++||......+. .++.....+..++...+....++ .+++...+.+.+.+|.+=++.-... . ... T Consensus 178 ~~~~~~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~gi~ilP~~~-~-----~~~ 251 (312) T 2h9b_A 178 KDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPAST-Q-----SIQ 251 (312) T ss_dssp TTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTTSCBEEEEGGG-G-----GBC T ss_pred CCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEEEEECHHH-H-----HHH T ss_conf 3432025564379779842876651246666666650788614653167999999998399599920988-7-----453 Q ss_pred CCHHHCCC--CCCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 80010025--64442371010002777579999887 Q gi|254780170|r 210 RPSEHVIL--PDIISKSPLAPAIIQGDTEWYNIVSW 243 (342) Q Consensus 210 ~p~~~~il--~e~iskEPlg~avr~gD~~w~d~V~W 243 (342) . .+.+.+ ++..-.-++.++.|++.. ...+++ T Consensus 252 ~-~~l~~~pl~~~~~~~~~~l~~r~~~~--~~~~~~ 284 (312) T 2h9b_A 252 L-FNLSYVPLLDPDAITPIYIAVRNMEE--STYIYS 284 (312) T ss_dssp C-TTEEEEEBCSTTCEEEEEEEEETTCC--CHHHHH T ss_pred H-CCEEEEECCCCCCEEEEEEEEECCCC--CHHHHH T ss_conf 3-88799985798863289999979999--989999 No 94 >3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} Probab=91.32 E-value=0.76 Score=24.30 Aligned_cols=138 Identities=13% Similarity=0.084 Sum_probs=73.2 Q ss_pred HHHHHHHHHHCCCCCEEEEEE--CCCCCCHHHHHCCCEEEEEECCCCC---C-----------------CCH--HCCCCC Q ss_conf 999999999679822025998--1431002677439627998124325---3-----------------201--102784 Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLP--LNAKERFLALQSKQIDILSRNTDWT---L-----------------LRE--ISLGLA 117 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~--~~~~~rf~aL~sG~vDil~~~~T~T---~-----------------~Rd--~~~~v~ 117 (342) .+.+.+-..-++...+++... .+..-.+.+|.+|+||+....-|-| . .+. ...++. T Consensus 26 ~i~~~iLe~~g~~~v~~~~~~~~g~~~~~~~al~~GdiDv~~e~w~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (282) T 3o66_A 26 HMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQT 105 (282) T ss_dssp HHHHHHHHHHTTTSCCCEEEEEESSHHHHHHHHHHTSCSEEEEEEHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHSEE T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEE T ss_conf 99999998545983488865777628999999986997184042044577766335665787999999986565327836 Q ss_pred CCCCCCC-CCEEEEEECC----CCCCCHHHHCCC----CEEEEECCCHHH--HHHHHHHHCCCCCCEEEECCHHHHHHHH Q ss_conf 3532234-4023463021----134753641786----203431342699--9999998629985078747989999998 Q gi|254780170|r 118 FRPITYF-DGQGFIMHKK----KGISSVSQLSGA----SICVQAGTTTEL--TLADYFKAHNMKYHPIVFERVEEIDAAY 186 (342) Q Consensus 118 Fs~~~~~-dgq~~lVrk~----~~i~s~~dL~G~----~I~v~~GTT~e~--~l~~~~~~~~~~~~~v~~~~~~~a~~al 186 (342) ...|..+ +.+++.|++. .+++++.||... .++...+..+.. .+....+..++...-..--+......|+ T Consensus 106 ~~~~~~~~~~~~~~v~~~~a~~~~i~~i~dl~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~a~~~~A~ 185 (282) T 3o66_A 106 FFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDAL 185 (282) T ss_dssp ECCCCSCBCCEEEEECHHHHHHHTCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHHHHHCCCCSEEEEECGGGHHHHH T ss_pred EECCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHH T ss_conf 50564323455543568786334802201001333111123475444544203566654045566554222378899998 Q ss_pred HCCCEEEEEECCH Q ss_conf 7396029982504 Q gi|254780170|r 187 RAHRCDAYTGDIS 199 (342) Q Consensus 187 ~~Gr~DA~~~D~s 199 (342) .+|+++++..=.+ T Consensus 186 ~~~~~~v~~~w~p 198 (282) T 3o66_A 186 NTEKLDVALGYST 198 (282) T ss_dssp HTTSCSEEEEETT T ss_pred HCCCCEEEEECCC T ss_conf 6489769980488 No 95 >2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* Probab=90.96 E-value=0.82 Score=24.08 Aligned_cols=189 Identities=13% Similarity=0.072 Sum_probs=110.0 Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342) .+|.+++|+...+.. .+-.++.+++.+.- ....+++...++.+....|.+|++|+.+.....+.. T Consensus 88 ~~~~l~i~~~~~~~~-----------~~l~~~l~~~~~~~--P~v~i~i~~~~~~~~~~~l~~~~~Di~i~~~~~~~~-- 152 (313) T 2h98_A 88 VSQTLRIGYVSSLLY-----------GLLPEIIYLFRQQN--PEIHIELIECGTKDQINALKQGKIDLGFGRLKITDP-- 152 (313) T ss_dssp -CCEEEEEECGGGGG-----------TTHHHHHHHHHHHC--TTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCT-- T ss_pred CCCEEEEEECHHHHH-----------HHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCC-- T ss_conf 662399986105678-----------89999999998629--933432112782789999742155513530356673-- Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-------CCCHHHHCCCCEEE---EECCCHHHHHHHHHHHCCCCCCEE-EECCHH Q ss_conf 1027843532234402346302113-------47536417862034---313426999999998629985078-747989 Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-------ISSVSQLSGASICV---QAGTTTELTLADYFKAHNMKYHPI-VFERVE 180 (342) Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-------i~s~~dL~G~~I~v---~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~ 180 (342) ++. ..+.+.+...++++++.. --+.++|....... ..+......+..+++..+....++ .+++.. T Consensus 153 ---~~~-~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (313) T 2h98_A 153 ---AIR-RIMLHKEQLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQ 228 (313) T ss_dssp ---TEE-EEEEEEEEEEEEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHH T ss_pred ---HHH-HHHHHHHHHEEECCCCCHHHHCCCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCHH T ss_conf ---134-5543332203420477624433578758899808987984145676410256677886389874001349899 Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 9999987396029982504799999836780010025--6444237101000277757999988774433 Q gi|254780170|r 181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDTEWYNIVSWTHYAM 248 (342) Q Consensus 181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~~w~d~V~W~~~al 248 (342) .+.....+|..=++..... + .. ..++.+.+ ++.--.-|++.+.|+++. ...++|.+..+ T Consensus 229 ~~~~~v~~g~gi~~lP~~~--~----~~-~~~~l~~~pl~~~~~~~~i~l~~r~~~~--~~~~~~f~~~~ 289 (313) T 2h98_A 229 LALGLVAAGEGVCIVPASA--M----DI-GVKNLLYIPILDDDAYSPISLAVRNMDH--SNYIPKILACV 289 (313) T ss_dssp HHHHHHHTTSCBEEEEGGG--G----GS-CCTTEEEEEBCSTTCEEEEEEEEETTCC--CTHHHHHHHHH T ss_pred HHHHHHHHCCEEEEEHHHH--H----HH-HCCCEEEEECCCCCCCEEEEEEEECCCC--CHHHHHHHHHH T ss_conf 9999999499699713889--8----44-3099899987899860079999989988--97999999999 No 96 >1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E* Probab=90.77 E-value=0.35 Score=26.43 Aligned_cols=137 Identities=15% Similarity=0.056 Sum_probs=81.1 Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEE-EEEECCCCCCCHHHHCCCCEEEEECCC Q ss_conf 0259981431002677439627998124325320110278435322344023-463021134753641786203431342 Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQG-FIMHKKKGISSVSQLSGASICVQAGTT 155 (342) Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~-~lVrk~~~i~s~~dL~G~~I~v~~GTT 155 (342) .+++.-+-..+.-..+..|.+|+.+.+.-|-.|.+....... -.+--|.. +.|-........+.+.+++|+ |. T Consensus 43 ~i~~~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~~~~~l--~~L~~G~c~l~vA~~~~~~~~~~~~~~rIA----Tk 116 (208) T 1z7m_E 43 DLQIIFGKPNDVITFLEHGIVDIGFVGKDTLDENDFDDYYEL--LYLKIGQCIFALASYPDFSNKNFQRHKRIA----SK 116 (208) T ss_dssp SCCEEEECHHHHHHHHHTTSCSEEEEEHHHHHHSSCCCEEEE--EEETTCCCEEEEEECGGGGGCCCSSCEEEE----ES T ss_pred CEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEE--ECCCCCCEEEEECCCCCCCCHHCCCCCEEE----EH T ss_conf 859999888999999976987622003877631677417988--012578179997540013310011375884----22 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE Q ss_conf 69999999986299850787479899999987396029982504799999836780010025644423710 Q gi|254780170|r 156 TELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL 226 (342) Q Consensus 156 ~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl 226 (342) +....+.||.+++++++++......|. |-..|-+|+++.=.+.=..++. +..+++.+.+..+.- T Consensus 117 Yp~it~~~~~~~gi~~~ii~l~GsvE~--aP~~G~AD~IvDivsTG~TLk~-----N~L~~i~~i~~ssa~ 180 (208) T 1z7m_E 117 YPRVTKKYFAQKQEDIEIIKLEGSVEL--GPVVGLADAIVDIVETGNTLSA-----NGLEVIEKISDISTR 180 (208) T ss_dssp CHHHHHHHHHHTTCCEEEEECSSCTTH--HHHTTSCSEEEEEESSSHHHHT-----TTCEEEEEEEECCEE T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCEEEEEEECCCHHHHHH-----CCCEECEEEEEEEEE T ss_conf 368999999983994479967777767--6787820288886178889998-----879985158765889 No 97 >2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* Probab=90.69 E-value=0.74 Score=24.37 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=70.3 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCC-CC-CHHC-CCCC--CCCCCCCCCEEEEEECCC- Q ss_conf 9999999996798220259981431002677439627998124325-32-0110-2784--353223440234630211- Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWT-LL-REIS-LGLA--FRPITYFDGQGFIMHKKK- 135 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T-~~-Rd~~-~~v~--Fs~~~~~dgq~~lVrk~~- 135 (342) +++++.-+.-+ .+|+++..........+++| .|+++..-... .. ++.. ..++ ...+..+...+++++++. T Consensus 17 ~l~~~Fek~tG---i~V~~~~~~s~~l~~~i~~~-aDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~ 92 (237) T 2hxw_A 17 DIANKYSEKTG---VKVNVNFGPQATWFEKAKKD-ADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNP 92 (237) T ss_dssp HHHHHHHHHHC---CCEEEEESSHHHHHHHHHHH-CSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEEEESTTCT T ss_pred HHHHHHHHHHC---CEEEEEECCCHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCC T ss_conf 99999988019---75999977829999997659-999998460478999886104677772799994329999979997 Q ss_pred -CCCCHHHHCCCCEEEE--E--CC--CHHHHH-HHHH-HHCCC-------CCCEEEECCHHHHHHHHHCCCEEEEEECCH Q ss_conf -3475364178620343--1--34--269999-9999-86299-------850787479899999987396029982504 Q gi|254780170|r 136 -GISSVSQLSGASICVQ--A--GT--TTELTL-ADYF-KAHNM-------KYHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342) Q Consensus 136 -~i~s~~dL~G~~I~v~--~--GT--T~e~~l-~~~~-~~~~~-------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342) .+++++||....+... . +. +....+ .... ..... .-.++.+.+..++..++.+|++|+.+.-.+ T Consensus 93 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~d~~i~~~~ 172 (237) T 2hxw_A 93 LKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWID 172 (237) T ss_dssp TCCCSHHHHHHSCCCEEECCCTTSSCCTTTTHHHHHHHTTCCHHHHHHHHHTEEEECCCCTTC--CTTTTTCSEEEEEHH T ss_pred CCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCHHHHHHHHHHCCCEEEEEEHH T ss_conf 67652356642031066513688732227999999862222088999743570586588899999997077709987445 No 98 >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Probab=89.20 E-value=0.52 Score=25.34 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=47.1 Q ss_pred HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCH Q ss_conf 999999986299850787479899999987396029982504799999836780010025644423710100027775 Q gi|254780170|r 158 LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDT 235 (342) Q Consensus 158 ~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~ 235 (342) ..++..++..+++++++.+++..+++.++.+|+||.+.+-... +...++.....++...+.+.++|++++ T Consensus 60 dll~~i~~~lg~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~t--------~~r~~~~~~s~p~~~~~~~~v~~~~~~ 129 (267) T 3mpk_A 60 AVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVN--------SARESFLSFSRPYVRNGMVIVTRQDPD 129 (267) T ss_dssp HHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEEEEEECC--------GGGTTTEEECSCSEEECEEEEEESSTT T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCC--------HHHHHCCCCCCCEECCCEEEEEECCCC T ss_conf 9999999984995799982899999998636966599647899--------889840776762130440454201443 No 99 >1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1 Probab=88.86 E-value=1.2 Score=23.02 Aligned_cols=128 Identities=15% Similarity=0.037 Sum_probs=78.0 Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCC----CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEE Q ss_conf 202599814310026774396279981243253201102----7843532234402346302113475364178620343 Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISL----GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQ 151 (342) Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~----~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~ 151 (342) ..+++.-+-..+.-..+..|.+|+.+.+.-|-.|.+... .+.|...- -.+.++. .+..++++|+ T Consensus 45 ~~i~~~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~v~~l~dL~fG~cr----l~va~~~------~~~~~~~rIA-- 112 (206) T 1ve4_A 45 GGVALLELRNKDVPIYVDLGIAEIGVVGKDVLLDSGRDLFEPVDLGFGACR----LSLIRRP------GDTGPIRRVA-- 112 (206) T ss_dssp TSEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHCCSCCEEEEECCCSCEE----EEEEECT------TCCSCCCEEE-- T ss_pred CCEEEEEECHHHHHHHHHCCCCCEEECCHHHHHHCCCCCCEEEEEEEECEE----EEEEEEC------CCCCCCCEEE-- T ss_conf 987999977476999998498752002166665138986277435786669----9999860------5468740542-- Q ss_pred ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC Q ss_conf 1342699999999862998507874798999999873960299825047999998367800100256444237 Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS 224 (342) Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE 224 (342) |.+....++||++++++++++......| .|-..|-+|+++.=.+.=..++. +..+++.+.+..+ T Consensus 113 --TkYpnit~~~~~~~gi~~~ii~l~GsvE--~ap~~g~AD~IvDiv~TG~TLk~-----N~L~~i~~Il~s~ 176 (206) T 1ve4_A 113 --TKYPNFTARLLKERGWAADVVELSGNIE--LAAVTGLADAVVDVVQTGATLRA-----AGLVEVEVLAHST 176 (206) T ss_dssp --ESCHHHHHHHHHHTTCCCEEEECSSCTH--HHHHTTSSSEEEEEESSSHHHHH-----TTCEEEEEEEEEC T ss_pred --EHHHHHHHHHHHHCCCCCEEEECCCCCC--CCCCCCCCEEEEEEECCHHHHHH-----CCCEEEEEEEEEE T ss_conf --0269999999997499724996868603--54678851089998468999998-----7997515898648 No 100 >2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A Probab=88.76 E-value=0.086 Score=30.28 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=30.0 Q ss_pred HHHHHHHHCCCCCEEEEEECCCCC--------------------------CHHHHHCCCEEEEEECCC Q ss_conf 999999967982202599814310--------------------------026774396279981243 Q gi|254780170|r 64 CRALSSAIFDDPSKIQYLPLNAKE--------------------------RFLALQSKQIDILSRNTD 105 (342) Q Consensus 64 ~raiAaal~gd~~kVe~v~~~~~~--------------------------rf~aL~sG~vDil~~~~T 105 (342) .+..-+..+.++.+|+++++...+ ...+|.+|+||..+..-. T Consensus 160 l~~~l~~~Gl~~~dV~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aAL~~G~VDA~~~~~P 227 (365) T 2de3_A 160 LLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLP 227 (365) T ss_dssp HHHHHHHTTCCGGGSEEEECCCTTTCCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEEEHH T ss_pred HHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCH T ss_conf 99999984999899376204804444444310000134443212344204899997698269996575 No 101 >1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A Probab=87.12 E-value=1.5 Score=22.35 Aligned_cols=145 Identities=13% Similarity=0.006 Sum_probs=91.5 Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEE Q ss_conf 2025998143100267743962799812432532011027843532234402346302113-----47536417862034 Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICV 150 (342) Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v 150 (342) .+++++..+....+..|.+|++|+.+..... - ...+.+ .+.+.+.-.++++++.. ......++-..+.+ T Consensus 134 ~~i~i~~~~~~~~~~~l~~g~~D~~i~~~~~---~--~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (315) T 1uth_A 134 IQISTLRPNAGNLKEDMESGAVDLALGLLPE---L--QTGFFQ-RRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGV 207 (315) T ss_dssp CEEEEECTTSSCHHHHHHHTSCCEEEECCTT---C--CTTEEE-EEEEEECEEEEEETTCSSCCSSCCHHHHHHSEEEEE T ss_pred CCEEEEEECHHHHHHHHHCCCCEEEEEECCC---C--CCCCEE-EEEEEEEEEEEECCCCHHHCCCCCHHHHHHCCEEEE T ss_conf 6328997044889999867995299980799---9--998289-997611069996287554328988367741871798 Q ss_pred EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCC--CCCEE Q ss_conf 313426999999998629985078-747989999998739602998250479999983678001002564442--37101 Q gi|254780170|r 151 QAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIIS--KSPLA 227 (342) Q Consensus 151 ~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~is--kEPlg 227 (342) ..+.+....+..+++..+...+++ .+++...+...+.+|..=++..+. .... .....+.+++|-++. .-++. T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lP~~---~~~~--~~~~~~l~~~~~~~~~~~~~~~ 282 (315) T 1uth_A 208 VALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQR---FAVR--CEVPFGLTTSPHPAKLPDIAIN 282 (315) T ss_dssp CCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTSSCBEEEEHH---HHHH--HTTTTTEEEEECSSCCCCEEEE T ss_pred ECCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEEEECCHH---HHHH--HHHCCCEEEECCCCCCCCEEEE T ss_conf 5598615899999997699873379528578899999809999980199---9997--7446997997789888966899 Q ss_pred EECC Q ss_conf 0002 Q gi|254780170|r 228 PAII 231 (342) Q Consensus 228 ~avr 231 (342) .+.+ T Consensus 283 l~~~ 286 (315) T 1uth_A 283 LFWH 286 (315) T ss_dssp EEEE T ss_pred EEEC T ss_conf 9986 No 102 >1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1 Probab=87.10 E-value=1.5 Score=22.34 Aligned_cols=123 Identities=10% Similarity=0.046 Sum_probs=63.3 Q ss_pred CEEEEEE--CCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCCCC-------CCC--CCCCCCCEEEEEECCC--CCCCHH Q ss_conf 2025998--1431002677439-627998124325320110278-------435--3223440234630211--347536 Q gi|254780170|r 76 SKIQYLP--LNAKERFLALQSK-QIDILSRNTDWTLLREISLGL-------AFR--PITYFDGQGFIMHKKK--GISSVS 141 (342) Q Consensus 76 ~kVe~v~--~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~~v-------~Fs--~~~~~dgq~~lVrk~~--~i~s~~ 141 (342) .+|+++. ..+..+..++..| +.||++......+++-...+. .|. ...|+....++++++. .++++. T Consensus 34 ~~V~v~~~~ggSg~~~~~i~~g~~aDV~~~a~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~w~ 113 (310) T 1sbp_A 34 DNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRIDKNWIKRLPDDSAPYTSTIVFLVRKGNPKQIHDWN 113 (310) T ss_dssp CEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHHHHHHHHHTTSSCTTGGGGSHHHHCSEEBCEEEEEETTCTTCCCSGG T ss_pred CCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCHH T ss_conf 97799964786199999997499989898577788999997799872033430357403661258997079855666578 Q ss_pred HHCCCCE--EEEECCC--HH----HHHH---------------HHHHHCCCCCCEEEECCHHH-HHHHHHCCCEEEEEEC Q ss_conf 4178620--3431342--69----9999---------------99986299850787479899-9999873960299825 Q gi|254780170|r 142 QLSGASI--CVQAGTT--TE----LTLA---------------DYFKAHNMKYHPIVFERVEE-IDAAYRAHRCDAYTGD 197 (342) Q Consensus 142 dL~G~~I--~v~~GTT--~e----~~l~---------------~~~~~~~~~~~~v~~~~~~~-a~~al~~Gr~DA~~~D 197 (342) ||..... ....-.+ .- ..+. ++++...-+ ..+...+..+ ....+.+|++|+...- T Consensus 114 DL~~~~~k~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~n-~~~~~~~~~~~~~~~v~~Ge~~~~i~~ 192 (310) T 1sbp_A 114 DLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAEDFVKALFKN-VEVLDSGARGSTNTFVERGIGDVLIAW 192 (310) T ss_dssp GGGSTTCCEECCCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-EEECCSSHHHHHHHHHTSCCCSEEEEE T ss_pred HHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCEECCCCHHHHHHHHHCCCCCEEEEE T ss_conf 7612232425416776641169999999988640377589999999986315-733035766899999975987179885 Q ss_pred CH Q ss_conf 04 Q gi|254780170|r 198 IS 199 (342) Q Consensus 198 ~s 199 (342) .+ T Consensus 193 ~~ 194 (310) T 1sbp_A 193 EN 194 (310) T ss_dssp HH T ss_pred CC T ss_conf 11 No 103 >1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A Probab=86.76 E-value=1.6 Score=22.22 Aligned_cols=137 Identities=12% Similarity=0.148 Sum_probs=78.1 Q ss_pred HHHHHHHCCC-CCEEEEEEC--CCCCCHHHHHCCCEEEEEECCCCC----CCCH-------------------HCCCCCC Q ss_conf 9999996798-220259981--431002677439627998124325----3201-------------------1027843 Q gi|254780170|r 65 RALSSAIFDD-PSKIQYLPL--NAKERFLALQSKQIDILSRNTDWT----LLRE-------------------ISLGLAF 118 (342) Q Consensus 65 raiAaal~gd-~~kVe~v~~--~~~~rf~aL~sG~vDil~~~~T~T----~~Rd-------------------~~~~v~F 118 (342) -.|++.++.+ --+||.++. +....|.+|.+|++|+......-. .... ...++-+ T Consensus 22 a~i~~~~Le~~Gy~Ve~~~~~~~~~~~~~al~~GdiDv~~e~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (275) T 1sw5_A 22 ANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVV 101 (275) T ss_dssp HHHHHHHHHHTTCCEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEE T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEE T ss_conf 99999999986996599864786088999997699778973021046787764465435667789998764312677588 Q ss_pred CCCC-CCCCEEEEEECC----CCCCCHHHHCCCCEEEEECCCHH-----HHHHHHHHHCCCCCCEEEECCHHHHHHHHHC Q ss_conf 5322-344023463021----13475364178620343134269-----9999999862998507874798999999873 Q gi|254780170|r 119 RPIT-YFDGQGFIMHKK----KGISSVSQLSGASICVQAGTTTE-----LTLADYFKAHNMKYHPIVFERVEEIDAAYRA 188 (342) Q Consensus 119 s~~~-~~dgq~~lVrk~----~~i~s~~dL~G~~I~v~~GTT~e-----~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~ 188 (342) ..++ +-+..++.|++. .++.++.||++......-|...+ ..........++.++...-...+...+|+.+ T Consensus 102 ~~~~~~~~~~~~~v~~~~a~~~~~~~~~dl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~~A~~~ 181 (275) T 1sw5_A 102 AAKLGFRDDYALAVRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKN 181 (275) T ss_dssp EEEEEEECCEEEEEEHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHT T ss_pred ECCCCCCCCCEEEECHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC T ss_conf 25654468523667678742148566765101023541202776421465789888844986566434444788999865 Q ss_pred CCEEEEEECCHHH Q ss_conf 9602998250479 Q gi|254780170|r 189 HRCDAYTGDISAL 201 (342) Q Consensus 189 Gr~DA~~~D~s~L 201 (342) |+..++..=.+.- T Consensus 182 ~~~~v~~~w~P~~ 194 (275) T 1sw5_A 182 KQVDVIPAYTTDS 194 (275) T ss_dssp TSCSEEEEETTCH T ss_pred CCCEEEEECCCCC T ss_conf 8974998258875 No 104 >1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A Probab=83.12 E-value=2.3 Score=21.18 Aligned_cols=186 Identities=12% Similarity=0.138 Sum_probs=92.3 Q ss_pred HHHHHHHHHHCCC-CCEEEEEEC-CCCCCHHHHHCCCEEEEEECCC--CCC-CCHHCCCCCCC---------CCCCCCCE Q ss_conf 9999999996798-220259981-4310026774396279981243--253-20110278435---------32234402 Q gi|254780170|r 62 DFCRALSSAIFDD-PSKIQYLPL-NAKERFLALQSKQIDILSRNTD--WTL-LREISLGLAFR---------PITYFDGQ 127 (342) Q Consensus 62 Dl~raiAaal~gd-~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T--~T~-~Rd~~~~v~Fs---------~~~~~dgq 127 (342) +=|++++.+.-.+ ...++-+.. +..+-+.+++.|+.|+++-.-. ++. .|+..+..-.. ..+|+ . T Consensus 18 ~KC~~l~~a~~~~~~p~i~Cv~~~~~~~C~~~I~~g~AD~~~ld~~~~y~A~~~~~~L~pi~~E~~~~~~~~~~~y~--a 95 (334) T 1h45_A 18 TKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYY--A 95 (334) T ss_dssp HHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEEECSSSEESEEE--E T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEE--E T ss_conf 99999999876347988599958999999999976998889978399887405656988767651267778862799--9 Q ss_pred EEEEECCCCCCCHHHHCCCCEEEEE-CCCH----------------------HHHHHHHHHHC---CC---C-------- Q ss_conf 3463021134753641786203431-3426----------------------99999999862---99---8-------- Q gi|254780170|r 128 GFIMHKKKGISSVSQLSGASICVQA-GTTT----------------------ELTLADYFKAH---NM---K-------- 170 (342) Q Consensus 128 ~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~----------------------e~~l~~~~~~~---~~---~-------- 170 (342) ..+|++++.+ ++.+|.||+.|-.- +.|. +..+.+||... |. . T Consensus 96 Vavvkk~s~~-~~~~LkGkksChtg~~~~aGw~~Pi~~L~~~~~~~~~~~~~~~a~~~FF~~sC~PG~~~~~~~~LC~lC 174 (334) T 1h45_A 96 VAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLDWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLC 174 (334) T ss_dssp EEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHGGGSCCCCTTSCHHHHHHHHSSEEECTTSCTTTCGGGTTTC T ss_pred EEEEECCCCC-CHHHHCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 9998347865-466745885004688876652345787754056578885188899876402235587766564301227 Q ss_pred ---------C-CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC-------------CCCCCEE Q ss_conf ---------5-0787479899999987396029982504799999836780010025644-------------4237101 Q gi|254780170|r 171 ---------Y-HPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI-------------ISKSPLA 227 (342) Q Consensus 171 ---------~-~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~-------------iskEPlg 227 (342) . .--.|-.+.-++.=|..|.-|.-....+.+........++++|.+|=.- +.+.|-. T Consensus 175 ~g~~~~~C~~~~~~~Y~G~~GAlrCL~eg~GDVAFv~~~~v~~~~~~~~~~~d~~lLC~dg~~~~~~~~~~C~l~~~P~~ 254 (334) T 1h45_A 175 AGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIGESTVFEDLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSH 254 (334) T ss_dssp CCCGGGTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCCHHHHTTEEEEETTTEEEEGGGGGGSCSEEEECC T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 79888877789888776741168899719986799741454421355466667378888998646667765742016772 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 00027775799998877443311212 Q gi|254780170|r 228 PAIIQGDTEWYNIVSWTHYAMVTAEE 253 (342) Q Consensus 228 ~avr~gD~~w~d~V~W~~~ali~Aee 253 (342) .++-+.|..+.+.+. ..|..+.+ T Consensus 255 ~v~~~~~~~~~~~i~---~~L~~~~~ 277 (334) T 1h45_A 255 AVVARSVNGKEDAIW---NLLRQAQE 277 (334) T ss_dssp EEEEESSSCCHHHHH---HHHHHHHH T ss_pred EEEECCCCCCHHHHH---HHHHHHHH T ss_conf 589888744299999---99999999 No 105 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=82.03 E-value=2.6 Score=20.92 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=48.5 Q ss_pred HHCCCCEEEEECCCHH-HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH Q ss_conf 4178620343134269-999999986299850787479899999987396029982504 Q gi|254780170|r 142 QLSGASICVQAGTTTE-LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342) Q Consensus 142 dL~G~~I~v~~GTT~e-~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342) .|.|++|-+....... ..+...+...++.+++..+++..+++..+.....|.++.|.. T Consensus 2 sl~~krILlVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~ 60 (144) T 3kht_A 2 SLRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG 60 (144) T ss_dssp ---CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCC T ss_conf 98899899995899999999999996899829999899999999997179999998699 No 106 >2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureus subsp. aureus MU50, structural genomics; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Probab=79.25 E-value=2.7 Score=20.84 Aligned_cols=128 Identities=10% Similarity=0.100 Sum_probs=62.4 Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCC------CCCHHCCCCCC-- Q ss_conf 068898988015099999999996798220259981-431002677439627998124325------32011027843-- Q gi|254780170|r 48 AEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWT------LLREISLGLAF-- 118 (342) Q Consensus 48 s~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T------~~Rd~~~~v~F-- 118 (342) +|..+.|.++ ...|...+++ ..++++|. +..+.|.++.+|++|..+-..--+ ..-|....-+. T Consensus 7 ~ylGp~GsfS-------~~Aa~~~f~~-~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~DlL~~~~~~I 78 (267) T 2qmw_A 7 YYLGPKGTFS-------YLACRQYFSE-NEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFA 78 (267) T ss_dssp EEECSTTSHH-------HHHHHHHCCT-TSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEE T ss_pred EECCCCCHHH-------HHHHHHHCCC-CCCEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEECCHHHHHHCCCCEE T ss_conf 9838897199-------9999986476-7854650599999999997799888999871648138354343212479789 Q ss_pred C-CCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHH---HHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE Q ss_conf 5-32234402346302113475364178620343134269999---9999862998507874798999999873960299 Q gi|254780170|r 119 R-PITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTL---ADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY 194 (342) Q Consensus 119 s-~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l---~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~ 194 (342) . ..+.--.+-++++++..+..+ ++|- ++.+.+ .+|+..+.+ ++...++..++.+....+ ..|+ T Consensus 79 ~~e~~~~i~~~ll~~~~~~~~~I-----~~V~-----SHpqal~QC~~~l~~~~~--~~~~~~s~a~a~~~~~~~-~aai 145 (267) T 2qmw_A 79 HGEIRLDINFALYGNGTDSISDI-----KKVY-----SIAPAISQTTNYIHQHQF--DYDYVDSTIQSLTKIENG-VAAI 145 (267) T ss_dssp EEEEEEECCEEEECCSSCCSTTC-----CEEE-----ECHHHHHHSHHHHHHTTC--EEEECSSHHHHHHTCBTT-EEEE T ss_pred EEEEEEEEEEHHHCCCCCCCCCC-----CEEE-----EECHHHHHHHHHHHHCCC--CEEEHHHHHHHHHHHCCC-CHHH T ss_conf 99999877101132688763454-----0689-----754889999999987255--325348799999974236-0146 Q ss_pred EE Q ss_conf 82 Q gi|254780170|r 195 TG 196 (342) Q Consensus 195 ~~ 196 (342) .+ T Consensus 146 as 147 (267) T 2qmw_A 146 AP 147 (267) T ss_dssp EE T ss_pred HH T ss_conf 77 No 107 >3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS} Probab=77.87 E-value=3.5 Score=20.10 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=46.3 Q ss_pred HHHHHHHHHHHCC-------CCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCC-CCCCCCCEEEEEE Q ss_conf 9999999999679-------8220259981431002677439627998124325320110278435-3223440234630 Q gi|254780170|r 61 VDFCRALSSAIFD-------DPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFR-PITYFDGQGFIMH 132 (342) Q Consensus 61 VDl~raiAaal~g-------d~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs-~~~~~dgq~~lVr 132 (342) ..|++++|.+--. ...+|+|....+...+.+|.+|.+|+++.....+.......+.... .+.++++..+++. T Consensus 32 ~~l~~~la~aF~k~~~~~~~tgi~V~~~~~GSg~~i~~l~~G~~Di~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~viv~ 111 (294) T 3cvg_A 32 SGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAFRDHFMLIG 111 (294) T ss_dssp HTHHHHHHHHHHHHHHSCC---CEEEEEECCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEEEEEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCEEECCCCCEEEEC T ss_conf 88999999999975532368983899996882999999865898468631702368999738786523632567299988 Q ss_pred CC Q ss_conf 21 Q gi|254780170|r 133 KK 134 (342) Q Consensus 133 k~ 134 (342) .. T Consensus 112 ~~ 113 (294) T 3cvg_A 112 PP 113 (294) T ss_dssp CT T ss_pred CC T ss_conf 98 No 108 >2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Probab=77.84 E-value=3.5 Score=20.06 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=48.1 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEE--CCCCCCCCHHCCCCCCCCCCCCC----------- Q ss_conf 099999999996798220259981-4310026774396279981--24325320110278435322344----------- Q gi|254780170|r 60 DVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSR--NTDWTLLREISLGLAFRPITYFD----------- 125 (342) Q Consensus 60 DVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~--~~T~T~~Rd~~~~v~Fs~~~~~d----------- 125 (342) +.+.|..++.+... +|+-+.. +..+-+.++..|+.|+++- +..|+. |+..+. -+..-+|-+ T Consensus 354 E~~KC~~ls~~~~~---~i~Cv~~~s~~~Ci~~I~~g~ADi~~lDg~~~y~A-~ky~L~-pv~aE~y~~~~~~~~~~~~~ 428 (686) T 2d3i_A 354 EKSKCDRWSVVSNG---DVECTVVDETKDCIIKIMKGEADAVALDGGLVYTA-GVCGLV-PVMAERYDDESQCSKTDERP 428 (686) T ss_dssp HHHHHHHHHHHTTT---SEEEEEESSHHHHHHHHHHTSCCBEEECHHHHHHH-HHTTCE-EEEEEECSCGGGC------C T ss_pred HHHHHHHHHHHCCC---CEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHH-HHCCCE-EEEEEECCCCCCCCCCCCCC T ss_conf 89999999987089---73899479999999998769987899781887657-654988-87875126665533456766 Q ss_pred ---CEEEEEECCCCCCCHHHHCCCCEEEE Q ss_conf ---02346302113475364178620343 Q gi|254780170|r 126 ---GQGFIMHKKKGISSVSQLSGASICVQ 151 (342) Q Consensus 126 ---gq~~lVrk~~~i~s~~dL~G~~I~v~ 151 (342) ....+||+++. .++.+|.||+.|-. T Consensus 429 ~~y~~VAVvkkd~~-~~~~~LrGkksCHt 456 (686) T 2d3i_A 429 ASYFAVAVARKDSN-VNWNNLKGKKSCHT 456 (686) T ss_dssp CCEEEEEEEESSSC-CCTTSCTTSEEEES T ss_pred CCEEEEEEEECCCC-CCHHHHCCCCCCCC T ss_conf 54069999844778-78678378976457 No 109 >3fd3_A Chromosome replication initiation inhibitor protein; structural genomics, LYSR, PSI-2, protein structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str} Probab=75.52 E-value=4.1 Score=19.66 Aligned_cols=146 Identities=9% Similarity=-0.056 Sum_probs=84.6 Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011 Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342) Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342) |++||+++..+.-.. | =.....++.++ -+.++++...+....+..|++|++|+.+..... .+. T Consensus 1 r~tlria~~~~sl~~--------w---l~P~L~~f~~~---~pi~l~l~~~~~~~~~~~l~~g~~D~aI~~~~~---~~~ 63 (208) T 3fd3_A 1 RVTLNIATNADSLGT--------W---FLDAVSKFTGG---SDYLVNIAVDDQDHTVEWLRGGRVLAAVTAHDK---PVQ 63 (208) T ss_dssp CCEEEEEECHHHHTT--------T---HHHHHHHHHHT---SSCEEEEEECCSSCHHHHHHTTSCSEEEESCCS---CCT T ss_pred CEEEEEEECHHHHHH--------H---HHHHHHHHHHH---CCCEEEEEEECCHHHHHHHHCCCEEEEEECCCC---CCC T ss_conf 957899877387898--------8---99999999997---979799999456627888757975999983899---999 Q ss_pred CCCCCCCCCCCCCCEEEEEECC------CCCCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHH Q ss_conf 0278435322344023463021------1347536417862034-31342699999999862998507874798999999 Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKK------KGISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAA 185 (342) Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~------~~i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~a 185 (342) . +.+ .+.+-+...+++..+ ....+.+||.+...-. ..++.....................+++......+ T Consensus 64 ~--l~~-~~L~~~~~~~vasp~~~~~~~~~~~~~~dL~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (208) T 3fd3_A 64 G--CRV-TPLGVLRYHATASPDFMARHFADGVTPAALARAPGLTFNQKDRLQASWIRTALGEDVSYPTHWLPSTDGFVKA 140 (208) T ss_dssp T--CEE-EEEEEEEEEEEECHHHHHHHCTTCSCHHHHTTSCEEESSTTCCHHHHHHHHHHSSCCCCCEEECCCHHHHHHH T ss_pred C--EEE-EEEEEEEEEEEECHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCHHHHHHH T ss_conf 8--699-9946027999983499986379999999995086332256664113556641476654433788889999999 Q ss_pred HHCCCEEEEEECC Q ss_conf 8739602998250 Q gi|254780170|r 186 YRAHRCDAYTGDI 198 (342) Q Consensus 186 l~~Gr~DA~~~D~ 198 (342) ..+|..=++.-+. T Consensus 141 v~~G~Gia~lP~~ 153 (208) T 3fd3_A 141 SLAGMGWGLNPVQ 153 (208) T ss_dssp HHTTSCBEEEEHH T ss_pred HHHCCCEEECCHH T ss_conf 9939947748599 No 110 >2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1 Probab=75.15 E-value=4.2 Score=19.60 Aligned_cols=173 Identities=16% Similarity=0.084 Sum_probs=86.4 Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC-CC-C-CCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEEC Q ss_conf 0259981431002677439627998124325320110-27-8-4353223440234630211347536417862034313 Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS-LG-L-AFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAG 153 (342) Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~-~~-v-~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~G 153 (342) .++++.-.+++.-..|.+|++|+..-. ++...|-.. +. + +++..-+-.+.++++-++ .....+++|.+... T Consensus 39 ~~~~v~~~P~~Ln~~l~~GelDva~iS-s~~y~~~~d~y~llp~~~i~s~G~V~sv~l~s~-----~p~~~~~~Ial~~~ 112 (301) T 2i6e_A 39 GVTAITGVPTQMNAALLSGEVDIANVS-AVEFIRHADTLAALPDFSVAVLGPVYSVNLFHT-----CPLPELRRVALTSQ 112 (301) T ss_dssp TCCCEECCHHHHHHHHHHSSCSEEEEE-HHHHHHTTTTEEEEEEEEEEESSCCSSEEEEES-----SCGGGCCEEEECTT T ss_pred CEEEEECCHHHHHHHHHCCCCCEEECC-HHHHHHCCCCEEECCCCEEEEECCCCCEEEEEC-----CCCCCCCEEEECCC T ss_conf 768987898999999983998798728-999985528389858847998778778699947-----87200885883898 Q ss_pred CCHHHHHH-HHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE--EEECCHHHHHHHHH------------CCCC-HHHCCC Q ss_conf 42699999-99986299850787479899999987396029--98250479999983------------6780-010025 Q gi|254780170|r 154 TTTELTLA-DYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA--YTGDISALYALKLT------------NDRP-SEHVIL 217 (342) Q Consensus 154 TT~e~~l~-~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA--~~~D~s~La~~~~~------------~~~p-~~~~il 217 (342) |+|-..|- -.++..+...+.+.++...+ ....+.+|| +++|.. |.+.... +... ....++ T Consensus 113 s~TS~~Llrill~~~~~~p~~~~~~~~~~---~~~~~~~da~LlIGD~A-L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (301) T 2i6e_A 113 SAMSVALLEVLLRQKGLSPVLERAEGTAE---SLLAAGYDGVLRIGDDA-LREWYGVVGPLTPERTMTSLPHTGRGITVT 188 (301) T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCSCHH---HHHTTTCSEEEEESHHH-HHHHHHHSCCCCSSSCGGGCCSEETTEEEE T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCHH---HHHCCCCCEEEECCHHH-HHHHHHCCCCCCCCCCCHHHCCCCCCCEEE T ss_conf 87999999999996189853797688667---75134678689727898-764330243334321000001267884897 Q ss_pred C-----CCCCCCC--EE-EECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 6-----4442371--01-00027775799998877443311212330152089886 Q gi|254780170|r 218 P-----DIISKSP--LA-PAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVS 265 (342) Q Consensus 218 ~-----e~iskEP--lg-~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~ 265 (342) + ...+.-| +| .++|++-++ ..+...++.++-++|. +|.++.. T Consensus 189 DLG~~W~~~TGlP~vfa~~vvrr~~~~----~~~l~~~l~~S~~~~~--~~~~e~~ 238 (301) T 2i6e_A 189 DLAQEWFDLTGHPFTFAVWAYRKDNPP----PAALLQAMREARRRGI--GHLAEVS 238 (301) T ss_dssp EHHHHHHHHHSSCEEEEEEEEETTSCC----CHHHHHHHHHHHHHHH--HTHHHHH T ss_pred EHHHHHHHHHCCCCEEEEEEEECCCCH----HHHHHHHHHHHHHHHH--HCHHHHH T ss_conf 889999897799850434777268517----8999999999999987--5999999 No 111 >1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} SCOP: c.94.1.1 Probab=75.03 E-value=4 Score=19.69 Aligned_cols=30 Identities=3% Similarity=-0.228 Sum_probs=18.1 Q ss_pred CEEEECCHHHHHHHHHCCCEEEEEECCHHH Q ss_conf 078747989999998739602998250479 Q gi|254780170|r 172 HPIVFERVEEIDAAYRAHRCDAYTGDISAL 201 (342) Q Consensus 172 ~~v~~~~~~~a~~al~~Gr~DA~~~D~s~L 201 (342) ....+.+.+..+++|.+|++|......+.+ T Consensus 214 ~~~~~~~~~~~~~al~~G~vD~~~~~~~~~ 243 (547) T 1vr5_A 214 VELRVLSNNVAVGMLMKGELDWSNFFLPGV 243 (547) T ss_dssp EEECCSCHHHHHHHHHHTSCCEECSCCTTH T ss_pred EEEEECCCHHHHHHHHCCCCCEECCCCHHH T ss_conf 998724606778998606652440573356 No 112 >1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A* Probab=73.69 E-value=4.5 Score=19.38 Aligned_cols=134 Identities=11% Similarity=0.017 Sum_probs=67.4 Q ss_pred HHHHHHHHHHCCCCCEEEEE-ECCCCCCHHHHHCCCEEEEEECCCCCCCC------HHCCCCCCCCCCCC-CCEEEEEEC Q ss_conf 99999999967982202599-81431002677439627998124325320------11027843532234-402346302 Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYL-PLNAKERFLALQSKQIDILSRNTDWTLLR------EISLGLAFRPITYF-DGQGFIMHK 133 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v-~~~~~~rf~aL~sG~vDil~~~~T~T~~R------d~~~~v~Fs~~~~~-dgq~~lVrk 133 (342) ++.+.+-.++| -+|+.+ .++....+++|.+|+||+..-...-+..- +....++-. +++. ..+++.|++ T Consensus 25 ei~~~~Le~~G---y~V~~~~~~~~~~~~~al~~G~iDi~~E~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~vp~ 100 (309) T 1r9l_A 25 LLVSRALEKLG---YTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREG-VFVNGAAQGYLIDK 100 (309) T ss_dssp HHHHHHHHHTT---CEECCCEECCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEECS-CSEEEEEEEEEEEH T ss_pred HHHHHHHHHCC---CCEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCCEEEEC-CCCCCCCEEEEECH T ss_conf 99999999869---964751478739999999869975998443461004656430444068703-45556620476324 Q ss_pred CC----CCCCHHHHC---------------CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEC-CH----HHHHHHHHCC Q ss_conf 11----347536417---------------862034313426999999998629985078747-98----9999998739 Q gi|254780170|r 134 KK----GISSVSQLS---------------GASICVQAGTTTELTLADYFKAHNMKYHPIVFE-RV----EEIDAAYRAH 189 (342) Q Consensus 134 ~~----~i~s~~dL~---------------G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~-~~----~~a~~al~~G 189 (342) -. ++.+..++. |+-++...+-..........+..++........ +. .....++..+ T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ygl~~~~~~~~~s~~~~~~~~~~a~~~~ 180 (309) T 1r9l_A 101 KTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEG 180 (309) T ss_dssp HHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEEEECSCHHHHHHHHHHHHHTT T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCC T ss_conf 16765575407665345677651433333433223676301122166665430554312440467578999999864336 Q ss_pred CEEEEEECCH Q ss_conf 6029982504 Q gi|254780170|r 190 RCDAYTGDIS 199 (342) Q Consensus 190 r~DA~~~D~s 199 (342) +...+..-.+ T Consensus 181 ~~i~~~~w~p 190 (309) T 1r9l_A 181 KPVFYYTWTP 190 (309) T ss_dssp CCCEEEEEES T ss_pred CCEEEEEECC T ss_conf 7669996144 No 113 >3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Probab=73.11 E-value=2.8 Score=20.73 Aligned_cols=129 Identities=7% Similarity=-0.005 Sum_probs=64.2 Q ss_pred CCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCC------CHHCC---C Q ss_conf 8306889898801509999999999679822025998-143100267743962799812432532------01102---7 Q gi|254780170|r 46 GFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLL------REISL---G 115 (342) Q Consensus 46 pfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~------Rd~~~---~ 115 (342) -++|..+.|.++ ..-|...++. ..++++| -++.+.|.++.+|++|..+=..--+.+ -|... . T Consensus 8 tiayLGp~GtfS-------~~Aa~~~f~~-~~~~~vp~~s~~evf~aV~~g~~d~gVvPIENS~~G~V~~t~D~L~~~~~ 79 (313) T 3mwb_A 8 TYTFLGPQGTFT-------EAALMQVPGA-ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQE 79 (313) T ss_dssp EEEEESSTTSHH-------HHHHTTSTTG-GGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSC T ss_pred EEEECCCCCCHH-------HHHHHHHCCC-CCCEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCC T ss_conf 799758997299-------9999974588-87447667999999999977998779997314566663778998651558 Q ss_pred CCCC-CCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC Q ss_conf 8435-3223440234630211347536417862034313426999999998629985078747989999998739 Q gi|254780170|r 116 LAFR-PITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH 189 (342) Q Consensus 116 v~Fs-~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G 189 (342) +.-. ..++--.+.++.+++..+ +++ ++|....- ....-.+|++.+.+..+++...+...+...+... T Consensus 80 l~I~~E~~l~I~h~Ll~~~~~~l---~~I--k~V~SHpq--al~QC~~fL~~~~p~~~~~~~~sta~aA~~~~~~ 147 (313) T 3mwb_A 80 LRIIREALVPITFVLVARPGVEL---SDI--KRISTHGH--AWAQCRLWVDEHLPNADYVPGSSTAASAMGLLED 147 (313) T ss_dssp CEEEEEEEEECCCEEEECTTCCG---GGC--SEEEECHH--HHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTST T ss_pred CEEEEEEEEEEEHHHHHCCCCCH---HHC--EEEEECHH--HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC T ss_conf 56999887765455563689987---887--48995589--9999999987248862799617679999999864 No 114 >1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Probab=70.89 E-value=5.2 Score=18.97 Aligned_cols=135 Identities=14% Similarity=0.071 Sum_probs=73.6 Q ss_pred HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCCCCCEEEECCCCCHH Q ss_conf 9999999862998507874798999999873960299825047999998367800100256-444237101000277757 Q gi|254780170|r 158 LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIISKSPLAPAIIQGDTE 236 (342) Q Consensus 158 ~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~iskEPlg~avr~gD~~ 236 (342) ..+.+.++..|+++-.-+++-.+++-.....|.||++.++.+-+... ..|....-+. ....+.+..........+ T Consensus 133 ~~~~~lL~~~gi~~i~Ap~ea~aq~a~l~~~g~vd~v~s~D~D~l~~----g~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 208 (340) T 1b43_A 133 EDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLF----GAPRLVRNLTITGKRKLPGKNVYVEIKPE 208 (340) T ss_dssp HHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHT----TCSEEEESTTTCEEEECTTSSCEEEECCE T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCEEEEEECCCCHHHC----CCCCEEEEEECCCCCCCCCCCCCCCCCEE T ss_conf 99999999879778980828999999999759858999237213211----46641788675776446676653323128 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHC Q ss_conf 999988774433112123301520898862267177887623588765033379986799999997186999878864 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDRNL 314 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~rnl 314 (342) |.+.. -.-|++|+|....-. +.=+.|.+ -+..---|+.+.=|++.|++-||..++|+... T Consensus 209 ~~~~~-------~v~~~lgl~~~q~id---------~all~G~d--yn~~gi~giG~ktA~~li~~~~~~~~~~~~~~ 268 (340) T 1b43_A 209 LIILE-------EVLKELKLTREKLIE---------LAILVGTD--YNPGGIKGIGLKKALEIVRHSKDPLAKFQKQS 268 (340) T ss_dssp EEEHH-------HHHHHHTCCHHHHHH---------HHHHHCCT--TSTTCSTTCCHHHHHHHHHTCSSGGGGTGGGC T ss_pred EEEHH-------HHHHHCCCCHHHHHH---------HHHHCCCC--CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCC T ss_conf 97299-------978863999999989---------99971875--68555798279999999999599999987501 No 115 >3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp} Probab=70.50 E-value=2.5 Score=21.03 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCC---CH-HHHHCCCE-EEEEECC Q ss_conf 0999999999967982202599814310---02-67743962-7998124 Q gi|254780170|r 60 DVDFCRALSSAIFDDPSKIQYLPLNAKE---RF-LALQSKQI-DILSRNT 104 (342) Q Consensus 60 DVDl~raiAaal~gd~~kVe~v~~~~~~---rf-~aL~sG~v-Dil~~~~ 104 (342) +-.+.+.+.+..+ .+|+++.+++.+ .+ ..+.+|+. ||+..+. T Consensus 57 ~~~~~~~~e~~~g---i~v~~~~~~~~~~~~kl~~~~asg~~PDi~~~~~ 103 (535) T 3omb_A 57 NMQWAKDLEADCD---CKIEWQEVTREAWAQQKNATLASGDIADVNLNGY 103 (535) T ss_dssp GCHHHHHHHHHHT---SEEEEEEEEHHHHHHHHHHHHHHTCCCSEEESSC T ss_pred HHHHHHHHHHCCC---CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999999986649---7899997892689999999997899886999893 No 116 >3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua} Probab=68.19 E-value=3.4 Score=20.17 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=38.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH Q ss_conf 79999887744331121233015208988622671778876235887650333799867999 Q gi|254780170|r 236 EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY 297 (342) Q Consensus 236 ~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~ 297 (342) +||.--.|+..-+ ||..|||.+.|.........|.+..+. .+.+.||++.+|.. T Consensus 16 ~~R~~~gltq~el--A~~~gvs~~~vs~~E~g~~~Ps~~~l~------~ia~~l~vs~~~Ll 69 (114) T 3op9_A 16 RLKKEHGLKNHQI--AELLNVQTRTVAYYMSGETKPDIEKLI------RLATYFHLSIDELV 69 (114) T ss_dssp HHHHHHTCCHHHH--HHHHTSCHHHHHHHHHTSSCCCHHHHH------HHHHHHTCCHHHHH T ss_pred HHHHHCCCCHHHH--HHHHCCCCCHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHH T ss_conf 9999859999999--761088732799996587899999999------99999599899992 No 117 >2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Probab=67.30 E-value=6.2 Score=18.50 Aligned_cols=133 Identities=10% Similarity=0.041 Sum_probs=59.7 Q ss_pred CEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCC------CCCCCHHCCCCCC- Q ss_conf 306889898801509999999999679822025998-14310026774396279981243------2532011027843- Q gi|254780170|r 47 FAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTD------WTLLREISLGLAF- 118 (342) Q Consensus 47 fs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T------~T~~Rd~~~~v~F- 118 (342) .+|..+.|.++ . .|+..++ +.+| -++.+.|.++.+|++|..+=..- ++..-|....-++ T Consensus 9 IaylGp~GtfS-------~-~Aa~~~~-----~~~~~~si~~v~~av~~g~~d~gVvPiENS~~G~V~~t~D~L~~~~l~ 75 (283) T 2qmx_A 9 IAYQGEPGAYS-------E-IAALRFG-----EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVV 75 (283) T ss_dssp EEEESCTTSHH-------H-HHHHHHS-----EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEE T ss_pred EEEECCCCCHH-------H-HHHHHHC-----CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCE T ss_conf 99989997389-------9-9999847-----147889999999999779987799975042323566788686518980 Q ss_pred -CC-CCCCCCEEEEEECCCCCCCHHHHCC-CCEEEEECCCHHHHH---HHHHHHCCCCCCEEEECCHHHHHHHHHC---C Q ss_conf -53-2234402346302113475364178-620343134269999---9999862998507874798999999873---9 Q gi|254780170|r 119 -RP-ITYFDGQGFIMHKKKGISSVSQLSG-ASICVQAGTTTELTL---ADYFKAHNMKYHPIVFERVEEIDAAYRA---H 189 (342) Q Consensus 119 -s~-~~~~dgq~~lVrk~~~i~s~~dL~G-~~I~v~~GTT~e~~l---~~~~~~~~~~~~~v~~~~~~~a~~al~~---G 189 (342) .. .+.--.+.++++++.. ++. ++|- ++.+.+ +.|++++ ...+.+.+.+...+...+.. . T Consensus 76 I~~E~~l~I~h~Ll~~~~~~------~~~I~~V~-----SHpqal~QC~~~l~~~-~~~~~~~~~sta~aa~~~~~~~~~ 143 (283) T 2qmx_A 76 ILAETFVKVEHCLLGLPGAS------VETATKAM-----SHPQALVQCHNFFATH-PQIRAEAAYDTAGSAKMVAESRDK 143 (283) T ss_dssp EEEEEEEECCCEEEECSSCC------TTTCCEEE-----ECHHHHHHTHHHHHHC-TTSEEEECSCHHHHHHHHHHTTCT T ss_pred EEEEEEEEHHHHHHCCCCCC------HHHCCEEE-----CCHHHHHHHHHHHHHC-CCCCEEEECCCHHHHHHHHHHCCC T ss_conf 78888864213855378999------78750110-----3889999999989867-986148834879999998751666 Q ss_pred CEEEEEECCHHHHHHHHH Q ss_conf 602998250479999983 Q gi|254780170|r 190 RCDAYTGDISALYALKLT 207 (342) Q Consensus 190 r~DA~~~D~s~La~~~~~ 207 (342) .+-|+.+. +++.... T Consensus 144 ~~AAI~s~---~aa~~yg 158 (283) T 2qmx_A 144 SALAIASK---RAGELYG 158 (283) T ss_dssp TEEEEECH---HHHHHTT T ss_pred CEEECCHH---HHHHHHC T ss_conf 40010418---8987718 No 118 >3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Probab=66.64 E-value=6.4 Score=18.42 Aligned_cols=104 Identities=11% Similarity=-0.018 Sum_probs=50.5 Q ss_pred EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHHHHHHHH--- Q ss_conf 7874798999999873960299825047999998367800100256444237101000277757---9999887744--- Q gi|254780170|r 173 PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNIVSWTHY--- 246 (342) Q Consensus 173 ~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~V~W~~~--- 246 (342) ...+....+....+..|++.....-.............+....+.++.-..-+.+.++.++-.+ =..+++|.+- T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~I~~~s~~~eaA~~Fi~fl~s~e~ 289 (355) T 3c9h_A 210 VKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEG 289 (355) T ss_dssp CEEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEEECCSSCEEEECCEEEEETTBSCHHHHHHHHHHHHSHHH T ss_pred CCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHH T ss_conf 76656778999887526750799841188887764188716993258846633346887899988999999999779999 Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH Q ss_conf 3311212330152089886226717788762 Q gi|254780170|r 247 AMVTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342) Q Consensus 247 ali~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342) --+.||+.|+-..+-+.. .....++..+.. T Consensus 290 Q~~~a~~~~~~p~~~~v~-~~~~~~~~~~~~ 319 (355) T 3c9h_A 290 QTIMARQLQIPAVSPEVA-GENTANTMQAIH 319 (355) T ss_dssp HHHHHHHSCCCBCCTTCC-SSSBHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCC-CCCCCCHHHHHC T ss_conf 999998378677885557-864430122201 No 119 >3luy_A Probable chorismate mutase; structural genomics, APC38059, 3- phenylpyruvate, PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Probab=62.86 E-value=7.5 Score=17.97 Aligned_cols=111 Identities=5% Similarity=-0.061 Sum_probs=51.1 Q ss_pred CEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCC------CCHHCCCCCCCCCCCCCC-------EEEEEECCCCCCCHH Q ss_conf 20259981-4310026774396279981243253------201102784353223440-------234630211347536 Q gi|254780170|r 76 SKIQYLPL-NAKERFLALQSKQIDILSRNTDWTL------LREISLGLAFRPITYFDG-------QGFIMHKKKGISSVS 141 (342) Q Consensus 76 ~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~------~Rd~~~~v~Fs~~~~~dg-------q~~lVrk~~~i~s~~ 141 (342) ..+++++. +..+.|.++++|. |..+=..--+. .-|.. ++.... +--+ +.+++.++.. ++ T Consensus 36 ~~~~~~~~~si~~vf~av~~g~-d~gVvPIENS~~G~V~~tlD~L--~~~~~l-~i~~E~~l~I~~~Ll~~~~~~---~~ 108 (329) T 3luy_A 36 QGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDAL--IDAKDL-VGFARVGVNVEFDAYVAQGAD---PA 108 (329) T ss_dssp TCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHH--HTCSSC-EEEEEEEEECCCEEEEETTCC---GG T ss_pred CCCCEEECCCHHHHHHHHHCCC-CEEEEEEECCCCEEECCHHHHH--HCCCCE-EEEEEECCCEEEEHHCCCCCC---CC T ss_conf 7631364499999999974699-7699997355837673420376--456880-899997454551001078888---55 Q ss_pred HHCCCCEEEEECCCHHHHH---HHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH Q ss_conf 4178620343134269999---9999862998507874798999999873960299825047999998 Q gi|254780170|r 142 QLSGASICVQAGTTTELTL---ADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKL 206 (342) Q Consensus 142 dL~G~~I~v~~GTT~e~~l---~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~ 206 (342) +. ++|- ++.+.| ++|++++++ +.+.+.+...+.+....+ +.|+.+. +++... T Consensus 109 ~I--k~Vy-----SHPqAl~QC~~~L~~~~~--~~~~~~sta~aa~~~~~~-~aAI~s~---~aae~y 163 (329) T 3luy_A 109 EA--RIAT-----AHPHGLAQCKRFIAEHRL--STQPATSNAAACRDLIPG-EIAFGPA---ICGELY 163 (329) T ss_dssp GC--CEEE-----ECHHHHHHTHHHHHHTTC--EEEECSSHHHHHHTCCTT-EEEEECT---THHHHS T ss_pred CE--EEEE-----ECHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCC-CCCCCHH---HHHHHH T ss_conf 40--6999-----524699999999997587--554525567777654213-3220438---899987 No 120 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=61.74 E-value=7.9 Score=17.84 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=79.9 Q ss_pred CCCCEEECCCCCEE-EEHH--HHHHHHHHHHCCCCCEEEEEECCCCCCHHH----HHCCCEEEEEE-CCCCCCCCHHCCC Q ss_conf 98830688989880-1509--999999999679822025998143100267----74396279981-2432532011027 Q gi|254780170|r 44 LVGFAEVKANGDWK-GFDV--DFCRALSSAIFDDPSKIQYLPLNAKERFLA----LQSKQIDILSR-NTDWTLLREISLG 115 (342) Q Consensus 44 ~ppfs~~d~~G~~~-GfDV--Dl~raiAaal~gd~~kVe~v~~~~~~rf~a----L~sG~vDil~~-~~T~T~~Rd~~~~ 115 (342) .||+.-.+.-.-|. |..= ++++.|+... .+...++.+...+.+-... +..+.+|++++ +.|-..=|+. T Consensus 5 ~~~~~~~~~p~i~~~~~srL~~l~~~i~~e~-~~~a~i~v~~~~~edav~~~~~~~~~~~~DviISRG~ta~~Ir~~--- 80 (225) T 2pju_A 5 HPPRLNDDKPVIWTVSVTRLFELFRDISLEF-DHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSR--- 80 (225) T ss_dssp --------CCEEEEECCHHHHHHHHHHHTTT-TTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTT--- T ss_pred CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHH--- T ss_conf 9997788998899986799999999999974-467569998274789999999998649986999685689999985--- Q ss_pred CCCCCCCCCCCEEEEEECC-CC-CCCHHHH--CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHH---HHHHC Q ss_conf 8435322344023463021-13-4753641--7862034313426999999998629985078747989999---99873 Q gi|254780170|r 116 LAFRPITYFDGQGFIMHKK-KG-ISSVSQL--SGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEID---AAYRA 188 (342) Q Consensus 116 v~Fs~~~~~dgq~~lVrk~-~~-i~s~~dL--~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~---~al~~ 188 (342) ++. |. +.++-. -+ ...+... -+.+|++..=...-..+..+..--+++++...|.+.+++. ..+.. T Consensus 81 ~~i--PV------VeI~vs~~Dil~aL~~a~~~~~kIavVgf~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~ 152 (225) T 2pju_A 81 LSV--PV------ILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA 152 (225) T ss_dssp CSS--CE------EEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH T ss_pred CCC--CE------EEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 899--88------9970787689999999997589889993764036999999996994499996688999999999998 Q ss_pred CCEEEEEECCHHH Q ss_conf 9602998250479 Q gi|254780170|r 189 HRCDAYTGDISAL 201 (342) Q Consensus 189 Gr~DA~~~D~s~L 201 (342) ..||++++|.... T Consensus 153 ~G~~vVVG~~~~~ 165 (225) T 2pju_A 153 NGTEAVVGAGLIT 165 (225) T ss_dssp TTCCEEEESHHHH T ss_pred CCCCEEECCHHHH T ss_conf 6997999885899 No 121 >1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Probab=58.81 E-value=8.9 Score=17.52 Aligned_cols=171 Identities=10% Similarity=0.043 Sum_probs=84.8 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECC--CCCCCCHHCCCCCCCC----------------- Q ss_conf 99999999996798220259981-431002677439627998124--3253201102784353----------------- Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNT--DWTLLREISLGLAFRP----------------- 120 (342) Q Consensus 61 VDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~--T~T~~Rd~~~~v~Fs~----------------- 120 (342) -.-|..++..+.. +++-+.. +..+-+.+++.|+.|+++-.- .|+. +...+.--+.. T Consensus 355 ~~KC~~~s~~~~p---~i~Cv~~~s~~~Cm~~I~~g~ADi~~lD~~~~y~A-~k~~L~Pv~aE~y~~~~~~~~~~~~~~~ 430 (689) T 1blf_A 355 QKKCQQWSQQSGQ---NVTCATASTTDDCIVLVLKGEADALNLDGGYIYTA-GKCGLVPVLAENRKSSKHSSLDCVLRPT 430 (689) T ss_dssp HHHHHHHHHHTTS---SEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHH-HTTTCEEEEEEECCCSSCSSSCTTTSCC T ss_pred HHHHHHHHHHCCC---CEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH-HHCCCEEEHHHHCCCCCCCCCCCCCCCC T ss_conf 9999999997189---74899469999999998769987897370877656-5449885001213556666554111466 Q ss_pred CCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHHHHH-HHHHHHCC--------------CCC-------C----- Q ss_conf 22344023463021134753641786203431-34269999-99998629--------------985-------0----- Q gi|254780170|r 121 ITYFDGQGFIMHKKKGISSVSQLSGASICVQA-GTTTELTL-ADYFKAHN--------------MKY-------H----- 172 (342) Q Consensus 121 ~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e~~l-~~~~~~~~--------------~~~-------~----- 172 (342) ..|| ...+|+|++...++.+|.||+.|-.. +.+.--++ -.++..++ +.. + T Consensus 431 ~~y~--aVAvvkk~~~~~~~~~LkGkksCHtg~~~~aGw~~P~g~L~~~~~~~~~~~fF~~sC~pg~~~~s~lc~lc~g~ 508 (689) T 1blf_A 431 EGYL--AVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGD 508 (689) T ss_dssp CCEE--EEEEEETTSTTCCSGGGTTSEEEESCTTCTTTTHHHHHHHHHHHTCSCGGGTSSEEECTTSCTTSTTSTTCCCS T ss_pred CCEE--EEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC T ss_conf 6427--99996278776637662688652358898443011367661588876622122565278988765321121488 Q ss_pred -----------EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH--------HCCCCHHHCCCCC-------------C Q ss_conf -----------7874798999999873960299825047999998--------3678001002564-------------4 Q gi|254780170|r 173 -----------PIVFERVEEIDAAYRAHRCDAYTGDISALYALKL--------TNDRPSEHVILPD-------------I 220 (342) Q Consensus 173 -----------~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~--------~~~~p~~~~il~e-------------~ 220 (342) --.|-.+.-+++=|..|.-|.-....+.+.-.-. ..-+++||.+|=. . T Consensus 509 ~~~~~~C~~~~~~~Y~Gy~GA~rCL~eg~GDVAFv~~~tv~~~~~g~~~~~wa~~l~~~d~~lLCpdG~r~~v~~~~~C~ 588 (689) T 1blf_A 509 DQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLNREDFRLLCLDGTRKPVTEAQSCH 588 (689) T ss_dssp SSCCSTTCSSTTSTTCHHHHHHHHHHTTSSSEEEEEHHHHHHTSTTSCCSTTTTTCCGGGEEEECTTSCEEETTCCSSSC T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCC T ss_conf 65555555677777655565114220388414673152066524875542134416845507888999837665664543 Q ss_pred CCCCCEEEECCCCCHHH Q ss_conf 42371010002777579 Q gi|254780170|r 221 ISKSPLAPAIIQGDTEW 237 (342) Q Consensus 221 iskEPlg~avr~gD~~w 237 (342) +.+-|-..+|-+.|..+ T Consensus 589 l~~vp~~~vv~r~~~~~ 605 (689) T 1blf_A 589 LAVAPNHAVVSRSDRAA 605 (689) T ss_dssp SEEECCCEEEECTTTHH T ss_pred CCCCCCCEEEECCCCCH T ss_conf 42467734897788638 No 122 >3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Probab=55.90 E-value=9.9 Score=17.22 Aligned_cols=88 Identities=11% Similarity=0.030 Sum_probs=46.7 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEEC--CCCCCCCHHCCCCCCCCCCCC------------ Q ss_conf 099999999996798220259981-43100267743962799812--432532011027843532234------------ Q gi|254780170|r 60 DVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRN--TDWTLLREISLGLAFRPITYF------------ 124 (342) Q Consensus 60 DVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~--~T~T~~Rd~~~~v~Fs~~~~~------------ 124 (342) +-+.|..++++... +++-+.. +..+-+.++..|++|+++-. ..|+. ++..+.--....|.. T Consensus 351 E~~KC~~ls~~~~~---~i~Cv~~~s~~~Cm~~I~~g~ADi~~lDg~~~y~A-~ky~L~pil~E~y~~~~~~~~~~~~~~ 426 (687) T 3mc2_A 351 ERTKCDQWSAVSGG---ALACATEETPEDCIAATMKGEADAMSLDGGFAYVA-GHCGLVPVLAENYLSTHSSGRLGSKCV 426 (687) T ss_dssp HHHHHHHHHHHTTT---SEEEEEESSHHHHHHHHHHTSSCBEEECHHHHHHH-HHTTCEEEEECCBCCCSCSSCCSTTST T ss_pred HHHHHHHHHHHHCC---CEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCCCC T ss_conf 99999999997378---87999589999999998769987898574889888-765985654000046665544553102 Q ss_pred ------CCEEEEEECCCCCCCHHHHCCCCEEEE Q ss_conf ------402346302113475364178620343 Q gi|254780170|r 125 ------DGQGFIMHKKKGISSVSQLSGASICVQ 151 (342) Q Consensus 125 ------dgq~~lVrk~~~i~s~~dL~G~~I~v~ 151 (342) ....-+|++++...++++|.||+.|-. T Consensus 427 ~~~~~~y~aVAVvkk~s~~~~~~~LrGkksCHt 459 (687) T 3mc2_A 427 NAPLEGYYVVAVVKKSDVGITWKSLQGKKSCHT 459 (687) T ss_dssp TCCCCCEEEEEEEESSCSCCCTTCCTTSCEEES T ss_pred CCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCC T ss_conf 677664048999517876665677468843245 No 123 >2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A Probab=55.27 E-value=8.8 Score=17.55 Aligned_cols=55 Identities=5% Similarity=0.062 Sum_probs=37.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHH Q ss_conf 999988774433112123301520898862267177887623588765033379986799999 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRI 299 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~ 299 (342) ++.--.|+... .|+.+||+.+.|.........|....++ .+...||.+.+|-.+. T Consensus 16 ~r~~~gltq~~--lA~~lgvs~~~is~~e~G~~~~s~~~~~------~la~~lgvs~~~ll~~ 70 (94) T 2ict_A 16 SLDELNVSLRE--FARAMEIAPSTASRLLTGKAALTPEMAI------KLSVVIGSSPQMWLNL 70 (94) T ss_dssp HHHHHTCCHHH--HHHHHTCCHHHHHHHHHTSSCCCHHHHH------HHHHHTCSCHHHHHHH T ss_pred HHHHCCCCHHH--HHHHCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHCC T ss_conf 99996999999--9998496389986987276447299999------9999999099999743 No 124 >1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Probab=54.18 E-value=11 Score=17.04 Aligned_cols=136 Identities=7% Similarity=-0.033 Sum_probs=75.4 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCCC-CCC--CCCCCCCCEEEEEECC-CC Q ss_conf 9999999996798220259981431002677439-62799812432532011027-843--5322344023463021-13 Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK-QIDILSRNTDWTLLREISLG-LAF--RPITYFDGQGFIMHKK-KG 136 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~~-v~F--s~~~~~dgq~~lVrk~-~~ 136 (342) +++++..++-+ .+|+++...+......++.| ..|+.+....-..+.-...+ .+. ..++......+.+.++ .. T Consensus 16 ~l~~~Fek~tG---i~V~~~~g~sg~l~~~i~~g~~~D~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (231) T 1atg_A 16 QLAGQFAKQTG---HAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLV 92 (231) T ss_dssp HHHHHHHHHHC---CCEEEEEECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEESSTTTS T ss_pred HHHHHHHHHHC---CEEEEEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCCCCEEEEECCEEEEEECCCCCC T ss_conf 99999998529---889999888899999998499984999666666788986144234642676302289862477778 Q ss_pred CCCHHHHCC---CCEEEEECCCH--HHHHHHHHHHCCC------CCCEEEECCHHHHHHHHHCCCEEEEEECCHH Q ss_conf 475364178---62034313426--9999999986299------8507874798999999873960299825047 Q gi|254780170|r 137 ISSVSQLSG---ASICVQAGTTT--ELTLADYFKAHNM------KYHPIVFERVEEIDAAYRAHRCDAYTGDISA 200 (342) Q Consensus 137 i~s~~dL~G---~~I~v~~GTT~--e~~l~~~~~~~~~------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~ 200 (342) ..++++|.. ++|++....+. -..........+. ..+++...+..+....+..|++|+.+.-.+. T Consensus 93 ~~~~~~l~~~~~~~i~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~s~ 167 (231) T 1atg_A 93 DNQGKVLAGNGWRHIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVALAQ 167 (231) T ss_dssp CTTSGGGGSSSCSCEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHHTTSSSEEEEEGGG T ss_pred CCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHCEEECCCCHHHHHHHHCCCCCEEEEHHHH T ss_conf 886888277547879996898782068999999872822555543106210231478888870775345105778 No 125 >1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Probab=53.75 E-value=11 Score=17.00 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=13.4 Q ss_pred EEECCCCCCCHHHHCCCCEEEE Q ss_conf 6302113475364178620343 Q gi|254780170|r 130 IMHKKKGISSVSQLSGASICVQ 151 (342) Q Consensus 130 lVrk~~~i~s~~dL~G~~I~v~ 151 (342) +|++++.+.++.+|.||+.|-. T Consensus 440 Vvkk~s~~~~~~~LrGKksCHt 461 (691) T 1cb6_A 440 VVRRSDTSLTWNSVKGKKSCHT 461 (691) T ss_dssp EEESSCTTCCGGGCTTSEEEES T ss_pred EECCCCCCCCHHHHCCCCCCCC T ss_conf 8506876650555058865456 No 126 >1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Probab=49.93 E-value=12 Score=16.62 Aligned_cols=194 Identities=11% Similarity=0.094 Sum_probs=95.6 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHC---CCEEEEEECCCCCCCCHHC----------------------C- Q ss_conf 9999999996798220259981431-00267743---9627998124325320110----------------------2- Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAK-ERFLALQS---KQIDILSRNTDWTLLREIS----------------------L- 114 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~-~rf~aL~s---G~vDil~~~~T~T~~Rd~~----------------------~- 114 (342) +++++..++-+ .+|+++..+.. ..+..+++ +.+||+..+.++. .|-.. . T Consensus 18 ~ii~~Fek~~g---i~V~~~~~~~~~~~~~~~~a~~~~~~Dvv~~~~~~~-~~~~~~g~~~~ld~~~~~~~~~~~~~~~~ 93 (325) T 1pot_A 18 GLLEQFTKETG---IKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYV-DKMRKEGMIQKIDKSKLTNFSNLDPDMLN 93 (325) T ss_dssp THHHHHHHHHC---EEEEEEEESCHHHHHHHHTTCSSSCSSBBCCBGGGH-HHHHHHTCBCCCCTTSCTTGGGBCGGGSC T ss_pred HHHHHHHHHHC---CEEEEEECCCHHHHHHHHHHCCCCCCEEEEECHHHH-HHHHHCCCCCCCCHHCCCCCCCCCHHHHC T ss_conf 99999999969---989999689999999999806999984999486899-99997695213550004450002877750 Q ss_pred -----CCCCCCCCCCCCEEEEEECC----CCCCCHHHHCCC----CEEEEECCC-----------------HHHHHHHHH Q ss_conf -----78435322344023463021----134753641786----203431342-----------------699999999 Q gi|254780170|r 115 -----GLAFRPITYFDGQGFIMHKK----KGISSVSQLSGA----SICVQAGTT-----------------TELTLADYF 164 (342) Q Consensus 115 -----~v~Fs~~~~~dgq~~lVrk~----~~i~s~~dL~G~----~I~v~~GTT-----------------~e~~l~~~~ 164 (342) +=.+..|+.+...++..+++ .+++++.+|-.. +++...... .+......+ T Consensus 94 ~~~~~g~~~~vP~~~~~~~l~Yn~d~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (325) T 1pot_A 94 KPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAY 173 (325) T ss_dssp CTTSTTCSSCEEEEEEEEEEEEETTTSCTTTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHH T ss_pred CCCCCCCCEEEEEEEEECCEEECHHHCCCCCCCCHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 44589983699997541212321644288765768884587756975014762017899999862353457757777899 Q ss_pred -HHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHH Q ss_conf -862998507874798999999873960299825047999998367800100256444237101000277757---9999 Q gi|254780170|r 165 -KAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNI 240 (342) Q Consensus 165 -~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~ 240 (342) ....+......+.. .+..+++.+|++.....-......... ...|-.+.+.++.-.--+-+.+|.++=++ =..+ T Consensus 174 ~~~~~~~~~~~~~~~-~~~~~~~~~Ge~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~~~i~k~s~~~e~A~~f 251 (325) T 1pot_A 174 NELKKLMPNVAAFNS-DNPANPYMEGEVNLGMIWNGSAFVARQ-AGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKL 251 (325) T ss_dssp HHHHHTGGGEEEECS-SCTHHHHHTTSCSEEEEEHHHHHHHHT-TSCCEEEECCTTCCEEEEEEEBCBTTCTTHHHHHHH T ss_pred HHHHHHHHCCCCCCC-HHHHHHHHCCCCCEEEEECHHHHHHHH-CCCCEEEEECCCCCEEEEEEEEEECCCCCHHHHHHH T ss_conf 999886220220140-567788760652458861066899974-279803994368860544546877899998999999 Q ss_pred HHHHHH---HHHHHHHHHCCHHHH Q ss_conf 887744---331121233015208 Q gi|254780170|r 241 VSWTHY---AMVTAEELGITQKNI 261 (342) Q Consensus 241 V~W~~~---ali~Aee~git~~nv 261 (342) ++|.+- ....+|+.|.-..|. T Consensus 252 i~~l~S~e~q~~~~~~~g~~p~~~ 275 (325) T 1pot_A 252 INFLLRPDVAKQVAETIGYPTPNL 275 (325) T ss_dssp HHHHHSHHHHHHHHHHHCCCCSBS T ss_pred HHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 999834999999999738888687 No 127 >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* Probab=48.43 E-value=13 Score=16.47 Aligned_cols=19 Identities=11% Similarity=-0.085 Sum_probs=14.0 Q ss_pred HHHHHHHHCCCEEEEEECC Q ss_conf 9999998739602998250 Q gi|254780170|r 180 EEIDAAYRAHRCDAYTGDI 198 (342) Q Consensus 180 ~~a~~al~~Gr~DA~~~D~ 198 (342) +.+...+....||+++.-. T Consensus 156 e~A~~Kl~~K~~D~IVAN~ 174 (226) T 1u7z_A 156 EYARQKRIRKNLDLICAND 174 (226) T ss_dssp HHHHHHHHHHTCSEEEEEE T ss_pred HHHHHHHHHCCCCEEEECC T ss_conf 8999999853999899605 No 128 >3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} Probab=48.34 E-value=12 Score=16.69 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=32.0 Q ss_pred HHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHH Q ss_conf 212330152089886226717788762358876503337998679999999 Q gi|254780170|r 251 AEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIR 301 (342) Q Consensus 251 Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~ 301 (342) |+..||++..|..+.....+|.+..|. .+.+.||++..+...-+. T Consensus 34 A~~~gvs~~~is~~E~g~~~~~~~~l~------~la~~l~v~~~~l~~~~~ 78 (83) T 3f6w_A 34 AARLGRPQSFVSKTENAERRLDVIEFM------DFCRGIGTDPYALLSKLE 78 (83) T ss_dssp HHHHTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTCCHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHHHHH T ss_conf 989738999999998799899999999------999995999999985301 No 129 >3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Probab=45.48 E-value=14 Score=16.18 Aligned_cols=135 Identities=7% Similarity=-0.104 Sum_probs=73.9 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCCCCC-CCCC--CCCCCEEEEEECCC-- Q ss_conf 9999999996798220259981431002677439-6279981243253201102784-3532--23440234630211-- Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK-QIDILSRNTDWTLLREISLGLA-FRPI--TYFDGQGFIMHKKK-- 135 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~~v~-Fs~~--~~~dgq~~lVrk~~-- 135 (342) +++++.-++-+ .+|+++.....+....++.| ..|+++....-..++....+.. ...+ .++....+.+.+.. T Consensus 39 ~i~~~Fe~~tg---i~V~~~~~gs~~l~~~i~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (253) T 3gzg_A 39 EAATAYEKATG---TPVRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLVAPASSKL 115 (253) T ss_dssp HHHHHHHHHHS---CCEEEEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEEEETTCCC T ss_pred HHHHHHHHHHC---CEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCC T ss_conf 99999988429---779999787599999997399965999675767888751575222430000146300244213323 Q ss_pred -----CCCCHHHHC--CCCEEEEECCCHH--HHHHHHHHHCCC----CCCEEEECCHHHHHHHHHCCCEEEEEECCH Q ss_conf -----347536417--8620343134269--999999986299----850787479899999987396029982504 Q gi|254780170|r 136 -----GISSVSQLS--GASICVQAGTTTE--LTLADYFKAHNM----KYHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342) Q Consensus 136 -----~i~s~~dL~--G~~I~v~~GTT~e--~~l~~~~~~~~~----~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342) ...++.++. +.++++..-.+.- ......+...+. ......++........+..|++|+.+...+ T Consensus 116 ~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~g~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 192 (253) T 3gzg_A 116 RVDPRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGS 192 (253) T ss_dssp CCCTTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHH T ss_pred CCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEHHH T ss_conf 45865403288615888759996898883599999999995724441332110455540035421465537750434 No 130 >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Probab=45.06 E-value=12 Score=16.75 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=45.3 Q ss_pred EEEEEEECCCCCCEE-ECCCCCEEEEHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCC Q ss_conf 499987178988306-889898801509-----9999999996798220259981431002677439627998124325 Q gi|254780170|r 35 FLKCGINTGLVGFAE-VKANGDWKGFDV-----DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWT 107 (342) Q Consensus 35 ~L~vGv~~~~ppfs~-~d~~G~~~GfDV-----Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T 107 (342) +|=||.-.+..-+.. .....+.+|.|+ +.|+..++... .+++|+..+..+ ++ +.++.+|++++..+.. T Consensus 27 VLDiGcG~G~~~~~~~~~~~~~v~gvD~S~~~i~~a~~~~~~~~---~~v~~~~~d~~~-l~-~~~~sfD~I~s~~~l~ 100 (209) T 2p8j_A 27 VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRK-LP-FKDESMSFVYSYGTIF 100 (209) T ss_dssp EEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCTTS-CC-SCTTCEEEEEECSCGG T ss_pred EEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC---CEEEEECCEEEC-CC-CCCCCCCHHHHHHHHH T ss_conf 99972788999999998589989999597999999986220357---436530020223-68-5434233888766787 No 131 >1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A* Probab=44.92 E-value=15 Score=16.13 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=69.5 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHC----CCEEEEEECCCCCCCCHHCCCC--------------CC----- Q ss_conf 999999999679822025998143100267743----9627998124325320110278--------------43----- Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQS----KQIDILSRNTDWTLLREISLGL--------------AF----- 118 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~s----G~vDil~~~~T~T~~Rd~~~~v--------------~F----- 118 (342) .++.+..++-+ .||+++..++.+.+..|.+ ..+||++..-.....+-...++ .| T Consensus 20 ~l~~~FeketG---IkV~~~~~~~~~~~~ki~aeg~~~~~Dv~~~~~~~~~~~~~~~gl~~~~~~~~~~~i~~~~~~~~~ 96 (312) T 1xvx_A 20 SWVDGFTKDTG---IKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLDAVTQAQVAQEYRPEHG 96 (312) T ss_dssp HHHHHHHHHHC---CCEEEEECCHHHHHHHHHHHGGGCCCSEEEESSSHHHHHHHHTTCBCCCCHHHHHHBCGGGSCSSS T ss_pred HHHHHHHHHHC---CEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCC T ss_conf 99999888659---889999898099999999638999963999887789888775152454311002222365266798 Q ss_pred -CCCCCCCCEEEEEECCC----C-CCCHHHHC-----CCCEEEEE-CCCHHHHHHHHHHHCC----------CCCCEEEE Q ss_conf -53223440234630211----3-47536417-----86203431-3426999999998629----------98507874 Q gi|254780170|r 119 -RPITYFDGQGFIMHKKK----G-ISSVSQLS-----GASICVQA-GTTTELTLADYFKAHN----------MKYHPIVF 176 (342) Q Consensus 119 -s~~~~~dgq~~lVrk~~----~-i~s~~dL~-----G~~I~v~~-GTT~e~~l~~~~~~~~----------~~~~~v~~ 176 (342) ..++.+...+++.+++. + .+++.||. |+ ++... +.+....+.......+ +.-.+... T Consensus 97 ~~~~~~~~~~~~~yn~~~~~~~~~P~t~~dl~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 175 (312) T 1xvx_A 97 RWTGIAARSTVFVYNPEKISEAELPKSIMDLAKPEWKGR-WAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTNFTAY 175 (312) T ss_dssp SCEEEEEEEEEEEECTTTSCGGGSCSSGGGGGSGGGTTS-EEECTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEC T ss_pred EEEEEEEEEEEEEECHHHCCCCCCCCCHHHHHCCHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 089998646999971001465669878998714021242-1012014568899887664133567999998631044144 Q ss_pred CCHHHHHHHHHCCCEEEEEECCHH Q ss_conf 798999999873960299825047 Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTGDISA 200 (342) Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~D~s~ 200 (342) .+......++.+|+|+..+..... T Consensus 176 ~~~~~~~~~~~~G~~~~~~~~~~~ 199 (312) T 1xvx_A 176 KGNSTVMKAVNAGQIDGGVIYHYY 199 (312) T ss_dssp SSHHHHHHHHHTTSSSEEEEETHH T ss_pred ECCCHHHHHHHCCCCCEEEEHHHH T ss_conf 126266666647975531310547 No 132 >2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L Probab=44.86 E-value=14 Score=16.20 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH Q ss_conf 99998877443311212330152089886226717788762358876503337998679999 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR 298 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~ 298 (342) ++..-.|+...+ |+..||+...+..+...-..|.+..+. .+...||.+.+|... T Consensus 13 ~R~~~glsq~~l--a~~~gvs~~~i~~~e~g~~~p~~~~l~------~la~~l~v~~~~ll~ 66 (68) T 2r1j_L 13 RRKKLKIRQAAL--GKMVGVSNVAISQWERSETEPNGENLL------ALSKALQCSPDYLLK 66 (68) T ss_dssp HHHHHTCCHHHH--HHHHTSCHHHHHHHHTTSSCCBHHHHH------HHHHHTTSCHHHHHH T ss_pred HHHHCCCCHHHH--HHHCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHC T ss_conf 999859999999--887399999999998799899999999------999997997999858 No 133 >2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} Probab=43.58 E-value=15 Score=16.00 Aligned_cols=201 Identities=11% Similarity=0.050 Sum_probs=94.6 Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHH----CCCEEEEEECCCC Q ss_conf 57949998717898830688989880150999999999967982202599814-310026774----3962799812432 Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQ----SKQIDILSRNTDW 106 (342) Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~----sG~vDil~~~~T~ 106 (342) ++.+|+|-....+. .+. |-.-++.++.-++-+ .+|+++... ..+.+..|+ +.++||++..-.. T Consensus 21 ~~~~l~Vy~~~~~~-----~~~----~~~~~i~~~FE~~~g---i~V~~~~~~s~~~ll~kl~~e~~~~~~DVv~~~~~~ 88 (330) T 2qry_A 21 MKPVLTVYTYDSFA-----ADW----GPGPVVKKAFEADCN---CELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNN 88 (330) T ss_dssp -CCEEEEEECHHHH-----STT----SSHHHHHHHHHTTSC---SEEEEEECSCHHHHHHHHHHHGGGCCCSEEEEEEGG T ss_pred CCCEEEEEECCCCC-----CCC----CCCHHHHHHHHHHHC---CEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCHH T ss_conf 79879999787655-----355----777799999999879---789999589989999999972799983299975677 Q ss_pred CCCCHHCCCC---------------CCCCCCC----CCCEEEEEECC---CCCCCHHHHC----CCCEEEEECCCH---H Q ss_conf 5320110278---------------4353223----44023463021---1347536417----862034313426---9 Q gi|254780170|r 107 TLLREISLGL---------------AFRPITY----FDGQGFIMHKK---KGISSVSQLS----GASICVQAGTTT---E 157 (342) Q Consensus 107 T~~Rd~~~~v---------------~Fs~~~~----~dgq~~lVrk~---~~i~s~~dL~----G~~I~v~~GTT~---e 157 (342) ...|-...++ .+..+++ +..-++..+++ ...++++||- ..+|+....+++ . T Consensus 89 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~p~s~~dL~~p~~~gki~~~~~~~~~~~~ 168 (330) T 2qry_A 89 LLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGL 168 (330) T ss_dssp GHHHHHHHTCBCCCCCCGGGCCCTTCCCCSSCEEEEEEEEEEEEETTTCSSCCSSHHHHHHCSSCCCEEEECTTTCHHHH T ss_pred HHHHHHHCCCCCCCCCCHHHHCCCHHHCCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCHHHH T ss_conf 89999874752124576333036423236650320452478874332256899778998514024125742775347789 Q ss_pred HHHH---H--------HHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH-HHHHHHHHCCCCHHHCCCCCCCCCCC Q ss_conf 9999---9--------9986299850787479899999987396029982504-79999983678001002564442371 Q gi|254780170|r 158 LTLA---D--------YFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS-ALYALKLTNDRPSEHVILPDIISKSP 225 (342) Q Consensus 158 ~~l~---~--------~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s-~La~~~~~~~~p~~~~il~e~iskEP 225 (342) ..+. . ++.+.. +.......+..+++..+.+|++++...-.. ...........+-.+.+.++...-.+ T Consensus 169 ~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Ge~~i~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~ 247 (330) T 2qry_A 169 GLLLWMQKVYGDDAPQAWQKLA-KKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQV 247 (330) T ss_dssp HHHHHHHHHHGGGHHHHHHHHH-TTEEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEEE T ss_pred HHHHHHHHHCCCHHHHHHHHHH-HHCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEECCCCEEEEE T ss_conf 9999999857956999999998-726766666468887650477538999515799999855798510440678707721 Q ss_pred EEEECCCCCHHH---HHHHHHHH Q ss_conf 010002777579---99988774 Q gi|254780170|r 226 LAPAIIQGDTEW---YNIVSWTH 245 (342) Q Consensus 226 lg~avr~gD~~w---~d~V~W~~ 245 (342) -+.++.++=++= ..+++|.+ T Consensus 248 ~~~~I~k~a~~~~~A~~Fidfll 270 (330) T 2qry_A 248 EVAARTAASKQPELAQKFLQFMV 270 (330) T ss_dssp EEEEEBTTCSCHHHHHHHHHHHT T ss_pred HHHHHHCCCCCHHHHHHHHHHHC T ss_conf 46665348997699999999975 No 134 >1h76_A Serotransferrin; iron transport, glycoprotein, metal-binding; HET: NAG; 2.15A {Sus scrofa} SCOP: c.94.1.2 c.94.1.2 PDB: 1jnf_A 2hav_A* 2hau_A* 1suv_E Probab=42.19 E-value=16 Score=15.86 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=16.4 Q ss_pred HHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEE Q ss_conf 9999999996798220259981-431002677439627998 Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILS 101 (342) Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~ 101 (342) .-|.+++..+.. +++-+.. +..+-+.+++.|+.|+++ T Consensus 357 ~KC~~~s~~~~~---~i~Cv~~~s~~dCm~~I~~g~ADi~~ 394 (696) T 1h76_A 357 QKCDAWSINSGG---KIECVSAENTEDCIAKIVKGEADAMS 394 (696) T ss_dssp HHHHHHHHHTTT---SEEEEEESSHHHHHHHHHHTSCCBEE T ss_pred HHHHHHHHHCCC---CEEEEECCCHHHHHHHHHCCCCCEEE T ss_conf 999999986078---66999479999999998769987899 No 135 >3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Probab=41.83 E-value=13 Score=16.46 Aligned_cols=11 Identities=0% Similarity=-0.221 Sum_probs=4.6 Q ss_pred HHHHHHHCCCE Q ss_conf 99999873960 Q gi|254780170|r 181 EIDAAYRAHRC 191 (342) Q Consensus 181 ~a~~al~~Gr~ 191 (342) ..+..+.+|+. T Consensus 40 s~is~~E~G~~ 50 (126) T 3ivp_A 40 RYLTNIENKGQ 50 (126) T ss_dssp HHHHHHHHSCC T ss_pred HHHHHHHHCCC T ss_conf 79999970777 No 136 >3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} Probab=41.66 E-value=15 Score=16.04 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHH Q ss_conf 999988774433112123301520898862267177887623588765033379986799999 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRI 299 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~ 299 (342) ++.--+|+... .|+.+||+.+++..+......|...-++ .++..||.+.+|..+. T Consensus 26 ~~~~~gisq~e--LA~~lGvs~~~is~~e~G~~~~s~~~a~------~La~~lgvs~~~~l~l 80 (104) T 3cec_A 26 ILDDLDINTAN--FAEILGVSNQTIQEVINGQRSITVDIAI------RLGKALGNGPRLWLNL 80 (104) T ss_dssp HHHHHTCCHHH--HHHHHTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTSCHHHHHHH T ss_pred HHHHCCCCHHH--HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHHH T ss_conf 99987998999--9999783789999997588789899999------9999989199999850 No 137 >2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} Probab=41.32 E-value=9 Score=17.49 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=33.2 Q ss_pred HHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH Q ss_conf 9999887744331121233--01520898862267177887623588765033379986799 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELG--ITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT 296 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~g--it~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~ 296 (342) +|.--.|+...+ ||..| |++..+.........|.+.++. .+...||++.+|. T Consensus 16 ~R~~~gltq~el--A~~~g~~is~~~is~~E~G~~~ps~~~l~------~la~~l~v~~~~L 69 (71) T 2ewt_A 16 IRTQQGLSLHGV--EEKSQGRWKAVVVGSYERGDRAVTVQRLA------ELADFYGVPVQEL 69 (71) T ss_dssp HHHHTTCCHHHH--HHHTTTSSCHHHHHHHHHTCSCCCHHHHH------HHHHHHTSCGGGG T ss_pred HHHHCCCCHHHH--HHHHCCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH T ss_conf 998849989999--98988874799999998599667689999------9999989689997 No 138 >2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* Probab=39.59 E-value=18 Score=15.61 Aligned_cols=224 Identities=12% Similarity=0.034 Sum_probs=99.0 Q ss_pred CEEEEEECCCCCCHHHHHC----CCEEEEEECCCCCCCCHHCCC-------------C--C------CCCCCCCCCEEEE Q ss_conf 2025998143100267743----962799812432532011027-------------8--4------3532234402346 Q gi|254780170|r 76 SKIQYLPLNAKERFLALQS----KQIDILSRNTDWTLLREISLG-------------L--A------FRPITYFDGQGFI 130 (342) Q Consensus 76 ~kVe~v~~~~~~rf~aL~s----G~vDil~~~~T~T~~Rd~~~~-------------v--~------Fs~~~~~dgq~~l 130 (342) .||+++..+..+.+.-|++ .++||++........+....+ + . +..++++.+..+. T Consensus 55 ekv~~i~~~~~~~~~kl~a~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (346) T 2voz_A 55 GEVNLIEASAEELIERIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQRARVLY 134 (346) T ss_dssp SEEEEEECCHHHHHHHHHHTGGGCCCSEEEEESHHHHHHHHHTTCBCCCCCHHHHHHSCGGGBCTTSSCEEEEEEEEEEE T ss_pred EEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHCHHHHCCCCCCCEEEEEEEEEEE T ss_conf 16888987829999999964789996399606889999998668745467077886380754388755123334347888 Q ss_pred EECC----CCCCCHHHHCC----CCEEEEECCCH--HHHH------------HHHHHHCCCCCCEEEECCHHHHHHHHHC Q ss_conf 3021----13475364178----62034313426--9999------------9999862998507874798999999873 Q gi|254780170|r 131 MHKK----KGISSVSQLSG----ASICVQAGTTT--ELTL------------ADYFKAHNMKYHPIVFERVEEIDAAYRA 188 (342) Q Consensus 131 Vrk~----~~i~s~~dL~G----~~I~v~~GTT~--e~~l------------~~~~~~~~~~~~~v~~~~~~~a~~al~~ 188 (342) .+++ ..+++++||-. .+|.....+.. ...+ .+.+....................++.. T Consensus 135 ~~~~~~~~~~p~sw~dL~~~~~kgki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (346) T 2voz_A 135 YSRDRVNPADLSTYEALADPQWRGKILVRPSSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQIRAIAA 214 (346) T ss_dssp EETTTCCGGGCCCSGGGGSGGGTTTEECCCTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHTBSSSCCSCHHHHHHHHHT T ss_pred EECCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC T ss_conf 73134577898706762398758965126888518999999999850761145678899874101023542367888763 Q ss_pred CCEEEEEECCHHHHHHHHHCCC-------CHHHCCCCCCCCCC-----CEEEECCCCCHH---HHHHHHHHHHHHHH--- Q ss_conf 9602998250479999983678-------00100256444237-----101000277757---99998877443311--- Q gi|254780170|r 189 HRCDAYTGDISALYALKLTNDR-------PSEHVILPDIISKS-----PLAPAIIQGDTE---WYNIVSWTHYAMVT--- 250 (342) Q Consensus 189 Gr~DA~~~D~s~La~~~~~~~~-------p~~~~il~e~iskE-----Plg~avr~gD~~---w~d~V~W~~~ali~--- 250 (342) |..|.................. +.+.......+-+| |-++++.+|-++ =..+++|.+-.=++ T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~i~k~a~n~e~A~~Fi~fllspe~Q~~~ 294 (346) T 2voz_A 215 GIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRDAAIAFLEYLASDDAQRYF 294 (346) T ss_dssp TSCSEEEEEHHHHHHHHHCCCHHHHHHHHHEEEECCSCSTTSCCBCEEEEEEEEBTTCTTHHHHHHHHHHHTSHHHHHHH T ss_pred CCCCCCHHCHHHHHHHHHCCCCHHHHCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHH T ss_conf 54320010102455553013203331144443003454347888469887433026999989999999997699999999 Q ss_pred HHHHHCCHHHHHHHHHCCCCHHHHHHHCCCC-CCCCHHHCCCCHHHHHHHHHHCC Q ss_conf 2123301520898862267177887623588-76503337998679999999718 Q gi|254780170|r 251 AEELGITQKNINQVSKDTTNPDVQRFLGIDK-SSNIGEALGLTKDWTYRIIRHMG 304 (342) Q Consensus 251 Aee~git~~nv~~~~~~s~~p~i~r~lg~~~-~~~~g~~lgl~~~~~~~~i~~vG 304 (342) ||+.+.--.|- .....|++..+.-..+ .-++..-....++| .+.|..|| T Consensus 295 a~~~~~~Pv~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 344 (346) T 2voz_A 295 AEGNNEYPVIP----GVPIDPVLAAHGQLKGDPLNVSNLGRYQPDS-ARLMNEVG 344 (346) T ss_dssp HHHTTCEESST----TSCCCHHHHTTCCCCBCCSCTHHHHHTHHHH-HHHHHHTT T ss_pred HHHCCEEECCC----CCCCCHHHCCCCCCCCCCCCHHHHHHCCHHH-HHHHHHCC T ss_conf 97274531789----9999800167332687878999997532999-99999728 No 139 >1wn9_A The hypothetical protein (TT1805); X-RAY crystallography, thermus thermophillus, structural genomics; 1.58A {Thermus thermophilus HB8} SCOP: d.319.1.1 PDB: 1wna_A Probab=39.19 E-value=12 Score=16.66 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=24.9 Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 44237101000277757999988774433112123301 Q gi|254780170|r 220 IISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGIT 257 (342) Q Consensus 220 ~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git 257 (342) .+|..-+||+++.||....++|+|.. |.|++ T Consensus 57 ll~~dAFGPafp~G~~ALaELv~wl~-------~~G~r 87 (131) T 1wn9_A 57 LLVPDAFGPAFPGGEEALSELVGLLL-------AQGAR 87 (131) T ss_dssp EEEEEEESTTSTTHHHHHHHHHHHHH-------HTTCC T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCC T ss_conf 21565558788436899999999999-------84883 No 140 >3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A Probab=39.05 E-value=17 Score=15.81 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH Q ss_conf 9999887744331121233015208988622671778876235887650333799867999 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY 297 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~ 297 (342) ++.--.|+... .|+..||++..+......-..|.+..+. .+.+.||++.+|.. T Consensus 36 ~R~~~glSq~~--lA~~~gis~~~ls~~E~g~~~ps~~~l~------~ia~~l~v~~~~ll 88 (117) T 3f52_A 36 FRADKGVTLRE--LAEASRVSPGYLSELERGRKEVSSELLA------SVCHALGASVADVL 88 (117) T ss_dssp HHHHHTCCHHH--HHHHTTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTCCHHHHH T ss_pred HHHHCCCCHHH--HHHHHHHHHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHH T ss_conf 99981999999--9988533399999998699899999999------99999899799996 No 141 >1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3 Probab=37.84 E-value=15 Score=16.00 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH Q ss_conf 999988774433112123301520898862267177887623588765033379986799 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT 296 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~ 296 (342) ++..-.|+...+ |+..||+...+..+......|.+..+. .+...||++.++. T Consensus 21 ~R~~~gltq~~l--A~~~gis~~~i~~~E~g~~~p~~~~l~------~ia~~l~v~~~~l 72 (74) T 1y7y_A 21 LRTAKGLSQETL--AFLSGLDRSYVGGVERGQRNVSLVNIL------KLATALDIEPREL 72 (74) T ss_dssp HHHHTTCCHHHH--HHHHTCCHHHHHHHHTTCSCCBHHHHH------HHHHHTTSCGGGG T ss_pred HHHHCCCCHHHH--HHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH T ss_conf 999819999999--989697999999998799899999999------9999989399998 No 142 >1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=37.46 E-value=19 Score=15.40 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=31.9 Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH Q ss_conf 1212330152089886226717788762358876503337998679999 Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR 298 (342) Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~ 298 (342) .|+..||+...+..+...-.+|.+..+. .+.+.||++.+|... T Consensus 24 la~~~gvs~~~i~~~e~G~~~p~~~~l~------~ia~~~~v~~~~ll~ 66 (76) T 1adr_A 24 LGKMVGVSNVAISQWERSETEPNGENLL------ALSKALQCSPDYLLK 66 (76) T ss_dssp HHHHHTSCHHHHHHHHTTSSCCCHHHHH------HHHHHTTSCHHHHHH T ss_pred HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHC T ss_conf 9999796999999998799899999999------999996988999957 No 143 >2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} Probab=37.36 E-value=16 Score=15.93 Aligned_cols=42 Identities=14% Similarity=0.292 Sum_probs=27.8 Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH Q ss_conf 121233015208988622671778876235887650333799867999 Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY 297 (342) Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~ 297 (342) .|+.+||+.+.+.........|.+..+. .+...||++.+|.. T Consensus 28 lA~~lgvs~~~is~~e~G~~~ps~~~l~------~la~~l~v~~~~l~ 69 (94) T 2kpj_A 28 IAKSIGVSPQTFNTWCKGIAIPRMGKVQ------ALADYFNINKSDLI 69 (94) T ss_dssp HHHHHTCCHHHHHHHHTTSCCCCHHHHH------HHHHHHTCCTHHHH T ss_pred HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHH T ss_conf 9998892883699997376799999999------99999897899990 No 144 >3ek3_A Nitroreductase; YP_211706.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343} Probab=36.99 E-value=10 Score=17.08 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHH---HHHHHCCC Q ss_conf 57999988774433112123301520898862267177---88762358 Q gi|254780170|r 235 TEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPD---VQRFLGID 280 (342) Q Consensus 235 ~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~---i~r~lg~~ 280 (342) ....|..-+..+.++.|+++|+.+.-+..+.....+|+ ++.+||+. T Consensus 108 ~~~~d~~~a~~n~~L~a~~~Glgt~~~~~~~~~~~~~~~~~~~~~l~lp 156 (190) T 3ek3_A 108 WAGMDCACAIENMFLAATSLGIASCWINQLGTTCDDPEVRAYLTSLGVP 156 (190) T ss_dssp THHHHHHHHHHHHHHHHHHTTCEEEEECTTTTTTTSHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCCCHHHHHHHHHHCCC T ss_conf 6762599999999999998699733000012104575599999981939 No 145 >3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae} Probab=36.32 E-value=19 Score=15.48 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=39.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHH Q ss_conf 799998877443311212330152089886226717788762358876503337998679999999 Q gi|254780170|r 236 EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIR 301 (342) Q Consensus 236 ~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~ 301 (342) +++.--.|+...+ |+..||+...+..+.....+|.+..+. .+...||++.++.+.-.. T Consensus 75 ~lR~~~glTQ~el--A~~~gis~~~is~iE~G~~~ps~~~l~------kia~~lgvs~~el~~~~e 132 (141) T 3kxa_A 75 SLRMKKGFTQSEL--ATAAGLPQPYLSRIENSKQSLQDKTVQ------KLANALGVSPLEVRAAFE 132 (141) T ss_dssp HHHHHTTCCHHHH--HHHTTCCHHHHHHHHHTCSCCCHHHHH------HHHHHHTCCHHHHHHHHG T ss_pred HHHHHCCCCHHHH--HHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHHHHH T ss_conf 9999829989999--999896999999998799789999999------999994998999986554 No 146 >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Probab=35.69 E-value=20 Score=15.22 Aligned_cols=71 Identities=10% Similarity=0.187 Sum_probs=43.4 Q ss_pred EEEEEEECCCCCCEEE-CCCCCEEEEHHH-----HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCC Q ss_conf 4999871789883068-898988015099-----99999999679822025998143100267743962799812432 Q gi|254780170|r 35 FLKCGINTGLVGFAEV-KANGDWKGFDVD-----FCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDW 106 (342) Q Consensus 35 ~L~vGv~~~~ppfs~~-d~~G~~~GfDVD-----l~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~ 106 (342) +|-+|.-.+.-.+... ...++.+|.|+| +++.-++.-.. ..+|+++..+..+....+..+++|++++|..+ T Consensus 53 vLDlG~G~G~~~l~la~~~~~~v~~vDi~~~~~~~A~~N~~~n~l-~~~v~~~~~D~~~~~~~~~~~~fD~Iv~NPPy 129 (259) T 3lpm_A 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL-EDQIEIIEYDLKKITDLIPKERADIVTCNPPY 129 (259) T ss_dssp EEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC-TTTEEEECSCGGGGGGTSCTTCEEEEEECCCC T ss_pred EEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CHHHEEEEHHHHHHHHCCCCCCCCEEEECCCC T ss_conf 999725858999999867898899999989999999999986073-30112330011100010355425478857885 No 147 >3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii} Probab=35.48 E-value=13 Score=16.55 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=32.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH Q ss_conf 7999988774433112123301520898862267177887623588765033379986799 Q gi|254780170|r 236 EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT 296 (342) Q Consensus 236 ~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~ 296 (342) +++..-.|+- --.|+.+||+...+.........|.+..+. .+...||++.+|. T Consensus 15 ~~r~~~g~tq--~~lA~~lgis~~~is~~e~G~~~p~~~~l~------~ia~~~~v~~~~L 67 (73) T 3omt_A 15 SVLAEKGKTN--LWLTETLDKNKTTVSKWCTNDVQPSLETLF------DIAEALNVDVREL 67 (73) T ss_dssp HHHHHHTCCH--HHHHHHTTCCHHHHHHHHTTSSCCCHHHHH------HHHHHHTSCGGGG T ss_pred HHHHHCCCCH--HHHHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH T ss_conf 9999939989--999998599866789998498899867999------9999989489998 No 148 >3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} Probab=34.72 E-value=13 Score=16.39 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH Q ss_conf 99988774433112123301520898862267177887623588765033379986799 Q gi|254780170|r 238 YNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT 296 (342) Q Consensus 238 ~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~ 296 (342) +.--.|+... .|+..||++..+.........|.+..+. .+...|+++.+|. T Consensus 19 r~~~gltq~~--lA~~~gvs~~tis~~e~g~~~p~~~~l~------~ia~~l~v~~~~l 69 (76) T 3bs3_A 19 LAEKQRTNRW--LAEQMGKSENTISRWCSNKSQPSLDMLV------KVAELLNVDPRQL 69 (76) T ss_dssp HHHTTCCHHH--HHHHHTCCHHHHHHHHTTSSCCCHHHHH------HHHHHHTSCGGGG T ss_pred HHHCCCCHHH--HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH T ss_conf 9990998999--9999888999999998599999999999------9999979979999 No 149 >3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp} Probab=34.68 E-value=13 Score=16.37 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=33.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH Q ss_conf 7999988774433112123301520898862267177887623588765033379986799 Q gi|254780170|r 236 EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT 296 (342) Q Consensus 236 ~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~ 296 (342) ++|..-.|+...+ |+.+||+++.+..+......|.+..+. .+...||++.+|. T Consensus 30 ~lR~~~glTq~el--A~~lgvs~~tis~~E~G~~~Ps~~~L~------kla~~l~vs~~~l 82 (111) T 3mlf_A 30 ELRTDYGLTQKEL--GDLFKVSSRTIQNMEKDSTNIKDSLLS------KYMSAFNVKYDDI 82 (111) T ss_dssp HHHHHTTCCHHHH--HHHHTSCHHHHHHHHHCCTTCCHHHHH------HHHHHHTCCGGGE T ss_pred HHHHHCCCCHHHH--HHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH T ss_conf 9999859999999--999698999999998499999999999------9999989489999 No 150 >2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 1zlq_A* 3dp8_A* 3e3k_A* 1uiu_A 1uiv_A Probab=34.62 E-value=21 Score=15.17 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=14.3 Q ss_pred CCEEEECCHHHHHHHHHCCCEEEEEE Q ss_conf 50787479899999987396029982 Q gi|254780170|r 171 YHPIVFERVEEIDAAYRAHRCDAYTG 196 (342) Q Consensus 171 ~~~v~~~~~~~a~~al~~Gr~DA~~~ 196 (342) +++..+.+....++++.+|++|.+.. T Consensus 194 I~~~~~~~~~~~~~~l~~G~vd~~~~ 219 (502) T 2noo_A 194 ITFNVIPDPTTRAVAFETGDIDLLYG 219 (502) T ss_dssp EEEEECCSHHHHHHHHHHSSCCEEEE T ss_pred EEEEEECCHHHHHHHHHCCCEEEEEC T ss_conf 99998588999999986797558815 No 151 >2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Probab=33.73 E-value=21 Score=15.12 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH Q ss_conf 98877443311212330152089886226717788762 Q gi|254780170|r 240 IVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342) Q Consensus 240 ~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342) -+|-.+.|--.|||+||+++.+-.+..+.+-|.+-++. T Consensus 11 rirlsltaksvaeemgisrqqlcnieqsetapvvvkyi 48 (77) T 2k9q_A 11 RIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYI 48 (77) T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHH T ss_pred EEEEEEEHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHH T ss_conf 66775226778998484598834741136577348889 No 152 >3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} Probab=32.28 E-value=18 Score=15.59 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=5.6 Q ss_pred EHHHHHHHHHHHH Q ss_conf 5099999999996 Q gi|254780170|r 59 FDVDFCRALSSAI 71 (342) Q Consensus 59 fDVDl~raiAaal 71 (342) ..++....+|.++ T Consensus 57 ~~~~~l~~ia~~l 69 (236) T 3bdn_A 57 LNAYNAALLAKIL 69 (236) T ss_dssp CCHHHHHHTTTTT T ss_pred HHHHHHHHHHHHC T ss_conf 6799999752202 No 153 >1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2 Probab=32.20 E-value=23 Score=14.87 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=36.2 Q ss_pred CCHHHH-CCCCEEEEECCCHHHHHHHHHHHC-CCCCCEEEE---CCHHHHHHHHHCCCEEEEEE Q ss_conf 753641-786203431342699999999862-998507874---79899999987396029982 Q gi|254780170|r 138 SSVSQL-SGASICVQAGTTTELTLADYFKAH-NMKYHPIVF---ERVEEIDAAYRAHRCDAYTG 196 (342) Q Consensus 138 ~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~-~~~~~~v~~---~~~~~a~~al~~Gr~DA~~~ 196 (342) +...+| .|-+|....|| .+++.++ ++..+.+.. ....+....+.+|++|+++. T Consensus 47 k~~~~lL~Gf~LvAT~GT------a~~L~e~ggl~v~~v~~~~~gg~p~I~d~I~~geI~lVIN 104 (178) T 1vmd_A 47 SFNLGTLSKHELYATGTT------GALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIF 104 (178) T ss_dssp HHSHHHHTTSEEEECHHH------HHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEE T ss_pred HHHHHHHCCCEEEEECCH------HHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEE T ss_conf 999999649749970538------9999873597489864037888852999998698218998 No 154 >3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} Probab=32.17 E-value=23 Score=14.86 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=33.3 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH Q ss_conf 77443311212330152089886226717788762358876503337998679999 Q gi|254780170|r 243 WTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR 298 (342) Q Consensus 243 W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~ 298 (342) |+... .|+..||+...+..+.....+|.+..+. .+...||++.++... T Consensus 25 lsq~~--lA~~~gis~~~i~~~E~G~~~ps~~~l~------~la~~l~i~~~~l~~ 72 (82) T 3clc_A 25 MTQED--LAYKSNLDRTYISGIERNSRNLTIKSLE------LIMKGLEVSDVVFFE 72 (82) T ss_dssp CCHHH--HHHHHTSCHHHHHHHHTTCCCCBHHHHH------HHHHHHTCCHHHHHH T ss_pred CCHHH--HHHCCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHC T ss_conf 99999--9570399887999998599899999999------999997988999977 No 155 >3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B} Probab=31.85 E-value=13 Score=16.39 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=75.4 Q ss_pred EEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEEE- Q ss_conf 2599814310026774396279981243253201102784353223440234630211-----3475364178620343- Q gi|254780170|r 78 IQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASICVQ- 151 (342) Q Consensus 78 Ve~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I~v~- 151 (342) +.+. +...+++..|.+|++|+.+... ... ...+.+. +.+.+.-.+++.++. .-.++++|.+...... T Consensus 122 ~~~~-~~~~~~~~~L~~~~~Dl~i~~~---~~~--~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~ 194 (306) T 3hhg_A 122 IRLS-LVSSEGYINLIERKVDIALRAG---ELD--DSGLRAR-HLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFT 194 (306) T ss_dssp EEEE-EECCSSSHHHHTTSSSCEEESC---CCC--CSSCEEE-EEEEEEEEEEECHHHHHHHCCCSSTTGGGGSCBCEES T ss_pred CEEE-EEECCHHHHHHCCCCEEEEECC---CCC--CCCEEEE-EEEEEEEEEEEECHHHHHCCCCCCHHHHCCCCEEEEC T ss_conf 4599-9737478898749903999817---888--8984899-9630359999806477645998997896148479856 Q ss_pred ECCCHHHHHHHHHHHCCCCCC-EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC--CEEE Q ss_conf 134269999999986299850-7874798999999873960299825047999998367800100256444237--1010 Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYH-PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS--PLAP 228 (342) Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~-~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE--Plg~ 228 (342) .++........++...+...+ ....++......++.+|..=++..... +..... ...-..++|+..... ++.. T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lp~~~--~~~~l~--~~~lv~i~~~~~~~~~~~~~l 270 (306) T 3hhg_A 195 EPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGCGIVCLSDFL--VDNDIA--EGKLIPLLAEQTSDKTHPFNA 270 (306) T ss_dssp STTTSCEEEEECSSSCEEECCCSSEESSHHHHHHHHHTTSCEEEEEHHH--HHHHHH--HTSSEECSTTTBCCCEEEEEE T ss_pred CCCCHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCEEECCHHH--HHHHHH--CCCEEEECCCCCCCCEEEEEE T ss_conf 9986036788763057655454310268999999998199289923999--999997--798699567456787138999 Q ss_pred ECCCCCH Q ss_conf 0027775 Q gi|254780170|r 229 AIIQGDT 235 (342) Q Consensus 229 avr~gD~ 235 (342) +.+++.. T Consensus 271 v~~~~~~ 277 (306) T 3hhg_A 271 VYYSDKA 277 (306) T ss_dssp EECSGGG T ss_pred EEECCCC T ss_conf 9979987 No 156 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=31.44 E-value=24 Score=14.79 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=43.8 Q ss_pred HCCCCEEEEECCCHH-HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH Q ss_conf 178620343134269-999999986299850787479899999987396029982504 Q gi|254780170|r 143 LSGASICVQAGTTTE-LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342) Q Consensus 143 L~G~~I~v~~GTT~e-~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342) |.|++|-+.-..... ..+.++++..| +++....+..++++.+...+.|.+..|.. T Consensus 5 l~g~kILiVDD~~~~r~~l~~~L~~~g--~~v~~a~~g~~Al~~l~~~~~dlvi~D~~ 60 (130) T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLG--ATTVLAADGVDALELLGGFTPDLMICDIA 60 (130) T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTT--CEEEEESCHHHHHHHHTTCCCSEEEECCC T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCCCEEHHHHC T ss_conf 899989999698999999999999889--99999899999999985289887457421 No 157 >2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3 Probab=31.03 E-value=24 Score=14.75 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=31.0 Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHH Q ss_conf 12123301520898862267177887623588765033379986799999 Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRI 299 (342) Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~ 299 (342) .|+..||+...|..+.....+|.+..+. .+...||++.++...- T Consensus 29 lA~~~gvs~~~i~~~E~g~~~ps~~~l~------~la~~l~v~~~~l~~~ 72 (77) T 2b5a_A 29 LADLAGLHRTYISEVERGDRNISLINIH------KICAALDIPASTFFRK 72 (77) T ss_dssp HHHHHTCCHHHHHHHHTTCSCCBHHHHH------HHHHHTTCCHHHHHHH T ss_pred HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHCC T ss_conf 9989796999999998799899999999------9999979889998543 No 158 >1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 Probab=31.02 E-value=24 Score=14.74 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=20.5 Q ss_pred HHHHHCCHHHHHHHHHC-CCCHHHHHHHCCCCCCCCHHHCCCCHHHH Q ss_conf 21233015208988622-67177887623588765033379986799 Q gi|254780170|r 251 AEELGITQKNINQVSKD-TTNPDVQRFLGIDKSSNIGEALGLTKDWT 296 (342) Q Consensus 251 Aee~git~~nv~~~~~~-s~~p~i~r~lg~~~~~~~g~~lgl~~~~~ 296 (342) |+..||+...+..+... ...|.+..+. .+...||++.+|. T Consensus 21 A~~~Gvs~~~is~~E~G~~~~p~~~~l~------~ia~~l~v~~~~l 61 (111) T 1b0n_A 21 AEKAGVAKSYLSSIERNLQTNPSIQFLE------KVSAVLDVSVHTL 61 (111) T ss_dssp HHHHTCCHHHHHHHHTTCCSCCCHHHHH------HHHHHHTCCHHHH T ss_pred HHHHCCCHHHHHHHHCCCCCCCCHHHHH------HHHHHHCCCHHHH T ss_conf 8784988999999987998999999999------9999989879998 No 159 >3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} Probab=30.63 E-value=17 Score=15.75 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=26.3 Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH Q ss_conf 12123301520898862267177887623588765033379986799 Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT 296 (342) Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~ 296 (342) .|+.+|++++.+..+......|.+..+. .+...||++.++. T Consensus 31 lA~~lgvs~~~is~~E~G~~~p~~~~l~------~ia~~l~v~~~~~ 71 (80) T 3kz3_A 31 VADKMGMGQSAVAALFNGINALNAYNAA------LLAKILKVSVEEF 71 (80) T ss_dssp HHHHTTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTSCGGGT T ss_pred HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH T ss_conf 9662098898899998799789999999------9999989889998 No 160 >1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Probab=29.77 E-value=26 Score=14.61 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=70.0 Q ss_pred HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHC-CCCCCCCCCCEEEECCCCCHH Q ss_conf 9999999862998507874798999999873960299825047999998367800100-256444237101000277757 Q gi|254780170|r 158 LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHV-ILPDIISKSPLAPAIIQGDTE 236 (342) Q Consensus 158 ~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~-il~e~iskEPlg~avr~gD~~ 236 (342) ..+...++..|+++-.-+++-.+++-..-..|.||++.++.+-+... ..+.... +......+.+......+...+ T Consensus 132 ~~~~~ll~~~gi~~i~Ap~EAdaq~a~L~~~g~vd~v~teD~D~l~~----g~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 207 (336) T 1rxw_A 132 DSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLF----GSPRLARNLAITGKRKLPGKNVYVDVKPE 207 (336) T ss_dssp HHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHT----TCSEEEESCCC-------------CCCCE T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCC----CCCHHHEEEECCCCEECCCCCCCCCCCEE T ss_conf 99999999749817875548999999999759814996577542236----77513303421585423565432355138 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHH Q ss_conf 9999887744331121233015208988622671778876235887650333799867999999971869998788 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDR 312 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~r 312 (342) |.+. .- .-|++|+|....- +++-|.|-+- .-.--|+.+.=|++.|++-|+-.+|++. T Consensus 208 ~~~~------~~-vl~~lgl~~~qfi---------d~~iL~G~Dy---~~gv~giG~ktA~kli~~~~~i~~i~~~ 264 (336) T 1rxw_A 208 IIIL------ES-NLKRLGLTREQLI---------DIAILVGTDY---NEGVKGVGVKKALNYIKTYGDIFRALKA 264 (336) T ss_dssp EEEH------HH-HHHHHTCCHHHHH---------HHHHHHCBTT---BCCCTTCCHHHHHHHHHHHSSHHHHHHH T ss_pred EEEH------HH-HHHHCCCCHHHHH---------HHHHHCCCCC---CCCCCCCCHHHHHHHHHHHCCHHHHHHH T ss_conf 8659------98-8987099999999---------9998608876---8999996889999999992999999998 No 161 >1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A Probab=28.13 E-value=27 Score=14.43 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=33.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHH Q ss_conf 99998877443311212330152089886226717788762358876503337998679 Q gi|254780170|r 237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDW 295 (342) Q Consensus 237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~ 295 (342) .+.--.|+... .|+..||++..+........+|.+..+. .+.+.||++.+. T Consensus 9 lR~~~g~tq~~--lA~~~gis~~~is~~e~g~~~ps~~~l~------~ia~~l~v~~~~ 59 (66) T 1utx_A 9 IREKKKISQSE--LAALLEVSRQTINGIEKNKYNPSLQLAL------KIAYYLNTPLED 59 (66) T ss_dssp HHHHTTCCHHH--HHHHHTSCHHHHHHHHTTSCCCCHHHHH------HHHHHTTSCHHH T ss_pred HHHHCCCCHHH--HHHHCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHH T ss_conf 99984999999--9887299899999998799899999999------999998977999 No 162 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Probab=27.48 E-value=28 Score=14.36 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=37.5 Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCC Q ss_conf 499987178988306889898801509-----999999999679822025998143100267743962799812432 Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDV-----DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDW 106 (342) Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDV-----Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~ 106 (342) +|=+|...+..-......-.+.+|.|+ +.+++.+....- ..++|+..++.+. + +.++++|++.+..+. T Consensus 25 VLDiGCGtG~~~~~la~~~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~~~~~~d~~~l-~-~~d~~fD~v~~~~~l 97 (239) T 1xxl_A 25 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESL-P-FPDDSFDIITCRYAA 97 (239) T ss_dssp EEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBC-C-SCTTCEEEEEEESCG T ss_pred EEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CCCEEEECCCCCC-C-CCCCCEEEEHHCCCH T ss_conf 99958868599999997099799997999999999986543056--5400010222356-8-888736530204512 No 163 >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Probab=27.41 E-value=28 Score=14.35 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=31.9 Q ss_pred CEEEEEEECCCCCCEE---ECCCCCEEEEHHH-----HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC Q ss_conf 9499987178988306---8898988015099-----99999999679822025998143100267743962799812 Q gi|254780170|r 34 GFLKCGINTGLVGFAE---VKANGDWKGFDVD-----FCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN 103 (342) Q Consensus 34 G~L~vGv~~~~ppfs~---~d~~G~~~GfDVD-----l~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~ 103 (342) .+|-+|+..++-.... ..++|+.+.+|+| ++|..-...+.+..+|+++.-+..+.++.|..+.+|++.-. T Consensus 59 ~vlEiGt~~G~stl~la~al~~~g~l~tIE~~~e~~~~Ar~~~~~ag~~~~rv~~i~gda~e~L~~l~~~~fDlVfiD 136 (221) T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221) T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC T ss_pred EEEEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEEC T ss_conf 899972805799999998479997899998999999999999996688762467732778998787434787779975 No 164 >2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A Probab=26.95 E-value=29 Score=14.30 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=5.4 Q ss_pred CCCCCCEEEEEEC Q ss_conf 2234402346302 Q gi|254780170|r 121 ITYFDGQGFIMHK 133 (342) Q Consensus 121 ~~~~dgq~~lVrk 133 (342) |.+.+|--++|.. T Consensus 117 p~~~~Gd~v~vd~ 129 (189) T 2fjr_A 117 AIRSEGKIYFVDK 129 (189) T ss_dssp EEEETTEEEEEET T ss_pred CEECCCCEEEEEC T ss_conf 6857994999929 No 165 >1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A Probab=26.89 E-value=27 Score=14.50 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=33.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH Q ss_conf 9998877443311212330152089886226717788762358876503337998679999 Q gi|254780170|r 238 YNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR 298 (342) Q Consensus 238 ~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~ 298 (342) +..-.|+... .|+..||+...+...... ..|....+. .+.+.||++.+|... T Consensus 10 R~~~gltq~e--lA~~~gis~~~~~~~e~g-~~~~~~~l~------~ia~~l~v~~~~l~~ 61 (69) T 1r69_A 10 RIQLGLNQAE--LAQKVGTTQQSIEQLENG-KTKRPRFLP------ELASALGVSVDWLLN 61 (69) T ss_dssp HHHTTCCHHH--HHHHHTSCHHHHHHHHTT-SCSSCTTHH------HHHHHTTCCHHHHHH T ss_pred HHHCCCCHHH--HHHHCCCCHHHHHHHHCC-CCCCHHHHH------HHHHHHCCCHHHHHC T ss_conf 9994999999--988639899999999869-998999999------999996988999828 No 166 >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125} Probab=26.52 E-value=29 Score=14.25 Aligned_cols=73 Identities=16% Similarity=0.072 Sum_probs=46.1 Q ss_pred HHHCCEEEEEEECCCCCCEEE--CCCCCEEEEHHH-----HHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-CCCEEEEE Q ss_conf 985794999871789883068--898988015099-----9999999967982202599814310026774-39627998 Q gi|254780170|r 30 IKKRGFLKCGINTGLVGFAEV--KANGDWKGFDVD-----FCRALSSAIFDDPSKIQYLPLNAKERFLALQ-SKQIDILS 101 (342) Q Consensus 30 Vk~rG~L~vGv~~~~ppfs~~--d~~G~~~GfDVD-----l~raiAaal~gd~~kVe~v~~~~~~rf~aL~-sG~vDil~ 101 (342) .+.+-+|-+|+..++....+. -++|+.+++|++ +++...+..+. ..+|+++..+..+..+.+. .+.+|++. T Consensus 53 ~~~~~VLEIGtg~G~Stl~la~~~p~~~v~tiD~~~~~~~~A~~~~~~~gl-~~~I~~~~gda~d~l~~l~~~~~fD~if 131 (233) T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-ESRIELLFGDALQLGEKLELYPLFDVLF 131 (233) T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-TTTEEEECSCGGGSHHHHTTSCCEEEEE T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCCEEEECCHHHHHHHHCCCCCCCEEE T ss_conf 589989996112129999999878997799997048999999999999742-1211265332877777511357762899 Q ss_pred EC Q ss_conf 12 Q gi|254780170|r 102 RN 103 (342) Q Consensus 102 ~~ 103 (342) -. T Consensus 132 iD 133 (233) T 2gpy_A 132 ID 133 (233) T ss_dssp EE T ss_pred EC T ss_conf 72 No 167 >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, fatty acid biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Probab=26.42 E-value=29 Score=14.24 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=7.0 Q ss_pred CCEEEEEECCCCC Q ss_conf 9627998124325 Q gi|254780170|r 95 KQIDILSRNTDWT 107 (342) Q Consensus 95 G~vDil~~~~T~T 107 (342) |++|+++.+..++ T Consensus 83 g~iDilVnnAG~~ 95 (249) T 3f9i_A 83 SNLDILVCNAGIT 95 (249) T ss_dssp SCCSEEEECCC-- T ss_pred CCCCEEEECCCCC T ss_conf 9998999899766 No 168 >2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} Probab=26.41 E-value=29 Score=14.24 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=24.8 Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH Q ss_conf 1212330152089886226717788762358876503337998679999 Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR 298 (342) Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~ 298 (342) .|+.+||+...+.++......+...-.+ .++..+|.+.+|-.+ T Consensus 30 LA~~lgvs~~~is~i~~Gk~~it~~~a~------rL~~~fg~s~~~wl~ 72 (113) T 2eby_A 30 LAELLHVHRNSVSALINNNRKLTTEMAF------RLAKVFDTTVDFWLN 72 (113) T ss_dssp HHHHHTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTCCHHHHHH T ss_pred HHHHHCCCHHHHHHHHHCCCCCCHHHHH------HHHHHHCCCHHHHHH T ss_conf 9999698999999999387789999999------999998958999998 No 169 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=25.69 E-value=30 Score=14.16 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=37.8 Q ss_pred HCCCCEEEEECCCH-HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH Q ss_conf 17862034313426-9999999986299850787479899999987396029982504 Q gi|254780170|r 143 LSGASICVQAGTTT-ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342) Q Consensus 143 L~G~~I~v~~GTT~-e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342) .+..+|-++-.... -..+...++.. .+++..+.+..++++.+.....|.+..|.. T Consensus 5 ~~~~~ILiVDDd~~~~~~l~~~L~~~--g~~v~~a~~~~~Al~~l~~~~~dliilD~~ 60 (154) T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRL--GCNIITFTSPLDALEALKGTSVQLVISDMR 60 (154) T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTT--TCEEEEESCHHHHHHHHTTSCCSEEEEESS T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHCCCCCEEEECCC T ss_conf 99998999979999999999999987--998999899999999986289988996688 No 170 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=25.18 E-value=31 Score=14.10 Aligned_cols=117 Identities=11% Similarity=0.101 Sum_probs=56.7 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH---CCCEEEEEECCCCCC---------------CCHHCCCCCCCCCC Q ss_conf 999999999967982202599814310026774---396279981243253---------------20110278435322 Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQ---SKQIDILSRNTDWTL---------------LREISLGLAFRPIT 122 (342) Q Consensus 61 VDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~---sG~vDil~~~~T~T~---------------~Rd~~~~v~Fs~~~ 122 (342) .||++.||..++-...++++....-.+..-.+. .|+ |+.+-..+..+ .|.....+...-|| T Consensus 42 ~eLA~~ia~~Lg~~l~~~~~~~FpDGE~~v~i~e~Vrg~-dV~iiqs~~~~~nd~lmELll~i~Alr~~gA~~ItlViPY 120 (379) T 2ji4_A 42 MELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGK-DVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPY 120 (379) T ss_dssp GHHHHHHHHHHTCCCCCEEEEECTTSCEEEEECSCCTTC-EEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEECSS T ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECC T ss_conf 999999999959930503889879997899879876898-3899968999815899999999999987405647999335 Q ss_pred C-CCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECC Q ss_conf 3-440234630211347536417862034313426999999998629985078747989999998739602998250 Q gi|254780170|r 123 Y-FDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDI 198 (342) Q Consensus 123 ~-~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~ 198 (342) | |.-|- |+. ..|...-..+.+.+...|.+ .+++++-....++.+....++-+..-. T Consensus 121 l~YsRQD---r~~----------------~~~~i~a~~va~~L~~~gvd-~vitvDlH~~~i~~ff~~p~~~l~~~~ 177 (379) T 2ji4_A 121 FPYSKQC---KMR----------------KRGSIVSKLLASMMCKAGLT-HLITMDLHQKEIQGFFNIPVDNLRASP 177 (379) T ss_dssp CSSCCC--------------------------CCHHHHHHHHHHHTTCC-EEEEESCSSGGGGGGSSSCEEEECCHH T ss_pred CCCCCCC---CCC----------------CCCCCHHHHHHHHHHHCCCC-CCEEEECCCHHHHCCCCCCCCCCCCHH T ss_conf 5334054---000----------------35640688998788752876-322453276776327789977532307 No 171 >1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L* Probab=25.13 E-value=30 Score=14.17 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=27.0 Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH Q ss_conf 1212330152089886226717788762358876503337998679999 Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR 298 (342) Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~ 298 (342) .|+..||+...+...... ..|....++ .+.+.||++.+|... T Consensus 22 lA~~~gis~~~is~~e~g-~~~~~~~l~------~ia~~l~v~~~~Ll~ 63 (71) T 1zug_A 22 LATKAGVKQQSIQLIEAG-VTKRPRFLF------EIAMALNCDPVWLQY 63 (71) T ss_dssp HHHHHTSCHHHHHHHHTT-CCSSCSTHH------HHHHHTTSCHHHHHH T ss_pred HHHHCCCCHHHHHHHHCC-CCCCHHHHH------HHHHHHCCCHHHHHC T ss_conf 978419899999999879-999999999------999994997999841 No 172 >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Probab=25.07 E-value=31 Score=14.08 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=6.1 Q ss_pred CCEEEECCHHHHHH Q ss_conf 50787479899999 Q gi|254780170|r 171 YHPIVFERVEEIDA 184 (342) Q Consensus 171 ~~~v~~~~~~~a~~ 184 (342) .+++.+|-.++++. T Consensus 196 ~~V~~vDi~~~~l~ 209 (373) T 2qm3_A 196 KRIAVLDIDERLTK 209 (373) T ss_dssp SEEEEECSCHHHHH T ss_pred CEEEEEECCHHHHH T ss_conf 98999979799999 No 173 >1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} SCOP: c.24.1.2 Probab=24.66 E-value=31 Score=14.04 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=35.4 Q ss_pred CCHHHH-CCCCEEEEECCCHHHHHHHHHHH-CCCCCCEEEE--CC-HHHHHHHHHCCCEEEEEE Q ss_conf 753641-78620343134269999999986-2998507874--79-899999987396029982 Q gi|254780170|r 138 SSVSQL-SGASICVQAGTTTELTLADYFKA-HNMKYHPIVF--ER-VEEIDAAYRAHRCDAYTG 196 (342) Q Consensus 138 ~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~-~~~~~~~v~~--~~-~~~a~~al~~Gr~DA~~~ 196 (342) +...+| .|-++....||. +++.+ .+++.+.+.- +. ..+......+|++|.++. T Consensus 21 ~~~~~ll~gf~i~AT~GTa------~~L~~~~gi~v~~v~k~~~gg~p~i~d~I~~g~I~lVIn 78 (126) T 1wo8_A 21 LRHKDVLARYPLLATGTTG------ARIQEATGLAVERVLSGPLGGDLQIGARVAEGKVLAVVF 78 (126) T ss_dssp HHTHHHHTTSCEEECHHHH------HHHHHHHCCCCEECCCTTTTHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHCCCEEEEEHHHH------HHHHHHCCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEE T ss_conf 9999997497599603299------999983496489997458899989999998599778998 No 174 >2jna_A Putative secreted protein; GFT-homodimer, PSI-2, alpha+beta, structural genomics, protein structure initiative; NMR {Salmonella typhimurium LT2} SCOP: d.230.6.1 Probab=23.40 E-value=0.87 Score=23.91 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=22.0 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC Q ss_conf 9138999999999999840124421689998579 Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRG 34 (342) Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG 34 (342) |||+++++++++.++++++.++..-+-++.+.-+ T Consensus 1 MKk~~i~aa~~l~~~Sf~a~AA~eit~~qa~~~~ 34 (104) T 2jna_A 1 MKKRIIAAALLATVASFSTLAAEQVSKQEISHFK 34 (104) T ss_dssp CCCCCCCCCCCCCCCCCCCCSCCCCCHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC T ss_conf 9569999999999987888888875999884048 No 175 >2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein; polyamine binding, syphilis, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Probab=22.97 E-value=34 Score=13.83 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=101.3 Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHCCC--EEEEEECCCCC--- Q ss_conf 94999871789883068898988015099999999996798220259981431-0026774396--27998124325--- Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAK-ERFLALQSKQ--IDILSRNTDWT--- 107 (342) Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~-~rf~aL~sG~--vDil~~~~T~T--- 107 (342) .+|++-.-.+| .+-++.++.-++-+ .||+++..+.. ..+..|++|. +||++.+..+. T Consensus 25 ~~L~v~~W~~y--------------~~~~~i~~Fe~~~g---IkV~~~~~~~~~~~~~kl~ag~~~~Dvv~~~~~~~~~~ 87 (343) T 2v84_A 25 DVLYLYNWTYY--------------TPTSLIKKFEQQYN---VQVVYDDYASNEDMFAKLSIGASGYDLVVPSGDFVSIM 87 (343) T ss_dssp CEEEEEEETTT--------------SCHHHHHHHHHHHT---CEEEEEEESCHHHHHHHHSSSCCSCSEECCBHHHHHHH T ss_pred CEEEEEECCCC--------------CCHHHHHHHHHHHC---CEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHH T ss_conf 98999947774--------------79899999999979---88999958998999999982899999899798999999 Q ss_pred ----------CCCHH-----------C----CCCCCCCCCCCCCEEEEEECC---CCCCCHHHHCC----CCEEEEECCC Q ss_conf ----------32011-----------0----278435322344023463021---13475364178----6203431342 Q gi|254780170|r 108 ----------LLREI-----------S----LGLAFRPITYFDGQGFIMHKK---KGISSVSQLSG----ASICVQAGTT 155 (342) Q Consensus 108 ----------~~Rd~-----------~----~~v~Fs~~~~~dgq~~lVrk~---~~i~s~~dL~G----~~I~v~~GTT 155 (342) .++.. . .+-.++.||.+...+++.+++ ...+++++|.. .++++....+ T Consensus 88 ~~~gll~~ld~~~~~~~~~i~~~~~~~~~~~~g~~y~vP~~~~~~~l~YNkd~~~~~p~tw~~l~~~~~~g~~~~~~~~~ 167 (343) T 2v84_A 88 KRKHLLEKIDLSKIPNVQFIKESVRARIAYDPKMEYSVPYYLGAAGIAVNKKAVPSYARTWSIFSRKDLAYRMSMMDDMR 167 (343) T ss_dssp HHTTCEECCCGGGCGGGGGBCHHHHHHCTTSTTCSSCEEEEEECCEEEEETTTCCSCCSSGGGGGCGGGTTSEEECSCHH T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEHHHCCCCCCCHHHHHHHHHCCCCCCCCCHH T ss_conf 97799654784554105440366531331079984787888532589986311588755088876787526766678626 Q ss_pred H-----------------HHHHHH---HHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHC Q ss_conf 6-----------------999999---99862998507874798999999873960299825047999998367800100 Q gi|254780170|r 156 T-----------------ELTLAD---YFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHV 215 (342) Q Consensus 156 ~-----------------e~~l~~---~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~ 215 (342) . ...+.+ .+. ...+.....+.+ ++...++.+|++.+...-............+++--. T Consensus 168 ~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (343) T 2v84_A 168 EVMGAALASLGYNVNTKNEQELAQAAILVT-DHWKPNLVKFDS-DGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDF 245 (343) T ss_dssp HHHHHHHHHTTCCTTCCCHHHHHHHHHHHH-HHTGGGEEEECS-SSHHHHHHHTSCSEEEECHHHHHHHSCGGGGGGEEE T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHCCCCCCCCC-HHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCEEE T ss_conf 799999998388868899899999999999-864545432565-668889865977999970899999999853998589 Q ss_pred CCCCCCCCCCE---EEECCCCCH---HHHHHHHHHHH---HHHHHHHHHCCHHH Q ss_conf 25644423710---100027775---79999887744---33112123301520 Q gi|254780170|r 216 ILPDIISKSPL---APAIIQGDT---EWYNIVSWTHY---AMVTAEELGITQKN 260 (342) Q Consensus 216 il~e~iskEPl---g~avr~gD~---~w~d~V~W~~~---ali~Aee~git~~n 260 (342) +.|.--. -+. +++|.++=. .=..+++|.+. +...+++.|..+.+ T Consensus 246 ~~P~e~g-~~~~~~~~~I~k~akn~e~A~~Fi~fllspe~q~~~~~~~g~~~~~ 298 (343) T 2v84_A 246 FIPQDVA-SPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTI 298 (343) T ss_dssp ECCTTTT-CEEEEEEEBEETTCSCHHHHHHHHHHHTSHHHHHHHHHHHTCCCSS T ss_pred EECCCCC-EEEEEEEEHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC T ss_conf 9327783-5644431112158999999999999965999999999976789853 No 176 >2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Probab=22.95 E-value=34 Score=13.83 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=35.2 Q ss_pred HHHHC--CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCH-------HHHHHHHHCCCEEEEEE Q ss_conf 36417--86203431342699999999862998507874798-------99999987396029982 Q gi|254780170|r 140 VSQLS--GASICVQAGTTTELTLADYFKAHNMKYHPIVFERV-------EEIDAAYRAHRCDAYTG 196 (342) Q Consensus 140 ~~dL~--G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~-------~~a~~al~~Gr~DA~~~ 196 (342) ...|. |-+|....|| .+|++++|++.+.|..... .+....+.+|++|.++. T Consensus 43 a~~L~~lGf~i~AT~GT------a~~L~~~gi~~~~V~~~~~~~~~~~~~~i~~~i~~g~i~lVIN 102 (143) T 2yvq_A 43 AEQLHNEGFKLFATEAT------SDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVIN 102 (143) T ss_dssp HHHHHTTTCEEEEEHHH------HHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEE T ss_pred HHHHHHCCCEEEECHHH------HHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCEEEEEE T ss_conf 99999749678973589------9999975985189985213676667433999987597599998 No 177 >2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* Probab=21.98 E-value=16 Score=15.98 Aligned_cols=19 Identities=21% Similarity=0.418 Sum_probs=10.6 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 9138999999999999840 Q gi|254780170|r 1 MYKDFFVSILCLIILFFTS 19 (342) Q Consensus 1 M~K~~l~~~l~l~~~~~~~ 19 (342) |||+++..+++.+++.+.. T Consensus 1 mkk~l~~~~~~~~~~~~~~ 19 (130) T 2a3m_A 1 MRKSLFAVMVLALVAAFAL 19 (130) T ss_dssp ------------------- T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 9049999999999999998 No 178 >2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13 Probab=21.83 E-value=36 Score=13.69 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=13.5 Q ss_pred HHHHHCCHHHHHHHHHC-CCCHHHHHHH Q ss_conf 21233015208988622-6717788762 Q gi|254780170|r 251 AEELGITQKNINQVSKD-TTNPDVQRFL 277 (342) Q Consensus 251 Aee~git~~nv~~~~~~-s~~p~i~r~l 277 (342) |+..||++..|..+... ..+|.+.++. T Consensus 38 A~~~gvs~~~is~iE~G~~~~~s~~~L~ 65 (83) T 2a6c_A 38 AELLGVTQPRVSDLMRGKIDLFSLESLI 65 (83) T ss_dssp HHHHTSCHHHHHHHHTTCGGGCCHHHHH T ss_pred HHHHCCCHHHHHHHHCCCCCCCCHHHHH T ss_conf 9998778999999987999998999999 No 179 >3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} Probab=21.83 E-value=36 Score=13.69 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHC-CCCHHHHHHHCCCCCCCCHHHCCCCHHHH Q ss_conf 999887744331121233015208988622-67177887623588765033379986799 Q gi|254780170|r 238 YNIVSWTHYAMVTAEELGITQKNINQVSKD-TTNPDVQRFLGIDKSSNIGEALGLTKDWT 296 (342) Q Consensus 238 ~d~V~W~~~ali~Aee~git~~nv~~~~~~-s~~p~i~r~lg~~~~~~~g~~lgl~~~~~ 296 (342) +.--+|+... .|+..||+..++..+... +.+|.+..+. .+...||++.++. T Consensus 16 r~~~gls~~~--LA~~~Gis~~tis~~e~g~~~~p~~~~l~------kia~~l~v~~~~l 67 (78) T 3b7h_A 16 ITQQNLTINR--VATLAGLNQSTVNAMFEGRSKRPTITTIR------KVCGTLGISVHDF 67 (78) T ss_dssp HHHTTCCHHH--HHHHHTCCHHHHHHHHCTTCCCCCHHHHH------HHHHHHTCCHHHH T ss_pred HHHCCCCHHH--HHHHHCCCHHHHHHHHCCCCCCCHHHHHH------HHHHHHCCCHHHH T ss_conf 9993998999--99988939999999986998896899999------9999989939999 No 180 >1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X Probab=21.56 E-value=27 Score=14.41 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=35.9 Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEE Q ss_conf 202599814310026774396279981243253201102784353223440234630 Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMH 132 (342) Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVr 132 (342) .+|.+...-+..-+.++.+|++|+..+.--++.+.....++. ..+...++..++|. T Consensus 29 ~~v~~~~~GSg~G~~~~~~G~~dia~ssr~l~~~e~~~~~~~-~~~~~~~~~~~~v~ 84 (321) T 1ixh_A 29 NKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLF-QFPTVIGGVVLAVN 84 (321) T ss_dssp CEEEEEECCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEE-EEEEEEEEEEEEEC T ss_pred CEEEEECCCCHHHHHHHHCCCCCEEECCHHHCHHHHHHCCCC-EEEEEEEEEEEEEE T ss_conf 868997478699999997499838982842589999776992-13788765899995 No 181 >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Probab=21.29 E-value=37 Score=13.62 Aligned_cols=13 Identities=23% Similarity=0.412 Sum_probs=7.8 Q ss_pred CCEEEEEECCCCC Q ss_conf 9627998124325 Q gi|254780170|r 95 KQIDILSRNTDWT 107 (342) Q Consensus 95 G~vDil~~~~T~T 107 (342) |++|+++.|..++ T Consensus 75 g~iDilVnnAG~~ 87 (244) T 1cyd_A 75 GPVDLLVNNAALV 87 (244) T ss_dssp CCCSEEEECCCCC T ss_pred CCCCEEEECCCCC T ss_conf 9998999899899 No 182 >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Probab=21.28 E-value=37 Score=13.62 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=44.9 Q ss_pred CCHHHHCCCCEEEEECCCH-HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH Q ss_conf 7536417862034313426-9999999986299850787479899999987396029982504 Q gi|254780170|r 138 SSVSQLSGASICVQAGTTT-ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342) Q Consensus 138 ~s~~dL~G~~I~v~~GTT~-e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342) .....|.+.+|-+...... -..+...+...| +++..+++.+++++.+.....|.++.|.. T Consensus 7 ~~~~~lr~lrILiVDD~~~~r~~l~~~L~~~g--~~v~~a~~~~~al~~l~~~~~dlii~D~~ 67 (143) T 3m6m_D 7 RHRARVRSMRMLVADDHEANRMVLQRLLEKAG--HKVLCVNGAEQVLDAMAEEDYDAVIVDLH 67 (143) T ss_dssp --------CEEEEECSSHHHHHHHHHHHHC----CEEEEESSHHHHHHHHHHSCCSEEEEESC T ss_pred CHHCCCCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCCCEEEEECC T ss_conf 00215689979999588999999999999879--99999899999999975289999998388 No 183 >3eki_A High affinity transport system protein P37; TPP, cell membrane, lipoprotein, membrane, transport protein, palmitate; HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A* 3e78_A* Probab=20.82 E-value=24 Score=14.80 Aligned_cols=117 Identities=10% Similarity=0.030 Sum_probs=55.3 Q ss_pred ECCCCCCCHHHHCCCCEEEEECCCHHHHH--HHHHHHC-CCCCCEE------EECCHHHHHHHHHCCCEEEEEE--CCHH Q ss_conf 02113475364178620343134269999--9999862-9985078------7479899999987396029982--5047 Q gi|254780170|r 132 HKKKGISSVSQLSGASICVQAGTTTELTL--ADYFKAH-NMKYHPI------VFERVEEIDAAYRAHRCDAYTG--DISA 200 (342) Q Consensus 132 rk~~~i~s~~dL~G~~I~v~~GTT~e~~l--~~~~~~~-~~~~~~v------~~~~~~~a~~al~~Gr~DA~~~--D~s~ 200 (342) .++...++++||.+++|++..-|++-.++ ..+++++ +.++... .-..+......+..|.+|+.+. |... T Consensus 232 ~kaw~~K~WeDf~~~~I~~~s~SSaSGYiyP~alLkkhFgk~~~dl~~~~~~~~~~y~~s~~~vi~g~~d~~i~FdD~~s 311 (403) T 3eki_A 232 KKAWNDKDWNTFRNFGILHGKDNSSSKFKLEETILKNHFQNKFTTLNEDRSAHPNAYKQKSADTLGTLDDFHIAFSEEGS 311 (403) T ss_dssp HHHHHTTCHHHHHHTCEEECCTTCTTTTHHHHHHHHHHSTTSCSCHHHHHHHSGGGEEECCGGGGGGCTTCCEEEEETTG T ss_pred HHHHCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHH T ss_conf 75121289889848956986798860128899999997088855543101046664303677775046772173041133 Q ss_pred HHHHHHH--CCC---C---HHHCCCC--CCCCCCCEEEECCCC-CHHHHHHHHHHHHHHHHH Q ss_conf 9999983--678---0---0100256--444237101000277-757999988774433112 Q gi|254780170|r 201 LYALKLT--NDR---P---SEHVILP--DIISKSPLAPAIIQG-DTEWYNIVSWTHYAMVTA 251 (342) Q Consensus 201 La~~~~~--~~~---p---~~~~il~--e~iskEPlg~avr~g-D~~w~d~V~W~~~ali~A 251 (342) . .+... ... | ++.+|+. ++|-.. .++||++ ++++.+.+.=++..|-.. T Consensus 312 ~-awt~~k~~~k~~~~~~n~kVrVI~~T~pIPnD--~Isvrk~Ls~e~~~~IskAfinl~kt 370 (403) T 3eki_A 312 F-AWTHNKSATKPFETKANEKMEALIVTNPIPYD--VGVFRKSVNQLEQNLIVQTFINLAKN 370 (403) T ss_dssp G-GGSCTTCTTCTTCCCTTCEEEEEEECCCBCCC--EEEEETTBCHHHHHHHHHHHHHHHHT T ss_pred H-HCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--EEEEECCCCHHHHHHHHHHHHHHHCC T ss_conf 4-23220025675677777728999958887688--38990899999999999999987506 No 184 >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Probab=20.71 E-value=38 Score=13.54 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=66.4 Q ss_pred CCCCHHHHCCCCEEEEECCCHH-HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------H Q ss_conf 3475364178620343134269-9999999862998507874798999999873960299825047999998-------3 Q gi|254780170|r 136 GISSVSQLSGASICVQAGTTTE-LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKL-------T 207 (342) Q Consensus 136 ~i~s~~dL~G~~I~v~~GTT~e-~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~-------~ 207 (342) .++...+|+||+|-|.-|+..- ..+...|.++|.++- +.+.+.+.....+....+.++..|.+.-..... . T Consensus 18 ~~~~~~~l~gk~ilITGgs~GIG~aia~~la~~G~~Vi-i~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 96 (260) T 3gem_A 18 YFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVI-ISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQ 96 (260) T ss_dssp ---------CCCEEESSTTSHHHHHHHHHHHHTTCCEE-EEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHH T ss_conf 66687686989899978967999999999998899899-99798289999998579879993079999999999999997 Q ss_pred CCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHH Q ss_conf 67800100256444237101000277757999988774433112123301520898862267177887623588765033 Q gi|254780170|r 208 NDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGE 287 (342) Q Consensus 208 ~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~ 287 (342) .... |..|-.-.+ +++.......++|....+=-+.+.+. +++.-+..|.+ ..++.| +- ...... T Consensus 97 ~g~i-DilVnnAg~---~~~~~~~~~~~~~~~~~~vNl~~~~~-----l~~~~~~~m~~-~~~g~i---i~---isS~~~ 160 (260) T 3gem_A 97 TSSL-RAVVHNASE---WLAETPGEEADNFTRMFSVHMLAPYL-----INLHCEPLLTA-SEVADI---VH---ISDDVT 160 (260) T ss_dssp CSCC-SEEEECCCC---CCCCCTTCHHHHHHHHHHHHTHHHHH-----HHHHHHHHHHT-SSSCEE---EE---ECCGGG T ss_pred HCCC-EEEEECCCC---CCCCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-CCCCCE---EE---EECHHH T ss_conf 0995-099978823---67888779999999999886334789-----99999876430-377843---89---852132 Q ss_pred HCCCCHHHHHHHHHH-CCCHHHHHHHHCCC Q ss_conf 379986799999997-18699987886488 Q gi|254780170|r 288 ALGLTKDWTYRIIRH-MGNYGEMFDRNLGN 316 (342) Q Consensus 288 ~lgl~~~~~~~~i~~-vGNYgei~~rnlg~ 316 (342) ..+.+.-.+|-+-|+ +=.+-..+.+.|++ T Consensus 161 ~~~~~~~~~Y~asKaal~~ltk~lA~el~~ 190 (260) T 3gem_A 161 RKGSSKHIAYCATKAGLESLTLSFAARFAP 190 (260) T ss_dssp GTCCSSCHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 578999706899999999999999999789 Done!