Query         gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 342
No_of_seqs    256 out of 2355
Neff          6.3 
Searched_HMMs 23785
Date          Mon May 23 00:32:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780170.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2vha_A Periplasmic binding tra 100.0       0       0  313.8  16.9  231   19-251     2-236 (287)
  2 2v25_A Major cell-binding fact 100.0 1.4E-43       0  295.0  17.0  240    1-248     3-246 (259)
  3 1xt8_A Putative amino-acid tra 100.0 8.1E-43       0  290.2  17.9  246    1-254     1-256 (292)
  4 3hv1_A Polar amino acid ABC up 100.0 1.7E-37 6.9E-42  256.5  19.9  222   16-242     3-227 (268)
  5 2o1m_A Probable amino-acid ABC 100.0 1.3E-35 5.6E-40  244.4  16.1  221   24-250     6-229 (258)
  6 2iee_A ORF2, probable ABC tran 100.0 5.4E-35 2.3E-39  240.6  16.4  219   21-249     8-232 (271)
  7 2pvu_A ARTJ; basic amino acid  100.0   2E-34 8.5E-39  237.0  15.0  216   25-251    33-250 (272)
  8 2q88_A EHUB, putative ABC tran 100.0 2.8E-33 1.2E-37  229.8  18.9  222   23-253     2-230 (257)
  9 1wdn_A GLNBP, glutamine bindin 100.0 6.9E-33 2.9E-37  227.2  18.1  207   34-251     3-210 (226)
 10 3h7m_A Sensor protein; histidi 100.0 1.2E-32 5.2E-37  225.6  17.9  210   31-251     8-218 (234)
 11 3mpk_A Virulence sensor protei 100.0 3.8E-32 1.6E-36  222.5  18.6  224   15-248    13-238 (267)
 12 3g41_A Amino acid ABC transpor 100.0 4.7E-32   2E-36  221.9  18.8  211   28-248     4-217 (246)
 13 3kzg_A Arginine 3RD transport  100.0 9.6E-32   4E-36  220.0  18.9  208   33-249     2-216 (237)
 14 3kbr_A Cyclohexadienyl dehydra 100.0 1.2E-31 4.9E-36  219.5  18.0  217   21-249     2-223 (239)
 15 3k4u_A Binding component of AB 100.0 3.2E-31 1.3E-35  216.7  19.9  210   31-250     2-215 (245)
 16 3del_B Arginine binding protei 100.0 1.7E-31 7.2E-36  218.4  18.3  208   34-251    11-220 (242)
 17 1pb7_A N-methyl-D-aspartate re 100.0 1.6E-33 6.7E-38  231.3   7.2  218   23-249    30-272 (292)
 18 1ii5_A Hypothetical protein SL 100.0 5.2E-30 2.2E-34  209.0  17.9  205   33-249     3-212 (233)
 19 1lst_A Lysine, arginine, ornit 100.0 1.1E-29 4.7E-34  206.9  18.9  210   34-250     4-219 (239)
 20 3i6v_A Periplasmic His/Glu/Gln 100.0 2.2E-28 9.1E-33  198.8  17.4  198   34-249     5-203 (232)
 21 2pyy_A Ionotropic glutamate re 100.0 4.8E-28   2E-32  196.6  15.4  202   34-250     3-209 (228)
 22 2a5s_A N-methyl-D-aspartate re 100.0 2.3E-28 9.6E-33  198.6   9.8  201   47-254    48-270 (284)
 23 1yae_A Glutamate receptor, ion  99.9 8.5E-27 3.6E-31  188.7  10.1  214   30-253     9-277 (312)
 24 1mqi_A Glutamate receptor 2; G  99.9 8.5E-26 3.6E-30  182.3  13.0  208   33-249     3-242 (263)
 25 2rc8_A Glutamate [NMDA] recept  99.9 9.3E-27 3.9E-31  188.4   6.4  189   54-249    66-274 (294)
 26 2v3u_A Glutamate receptor delt  99.9   8E-25 3.4E-29  176.2  14.0  207   34-250     3-245 (265)
 27 3g3k_A Glutamate receptor, ion  99.9 9.5E-22   4E-26  156.7  14.3  206   33-249     3-239 (259)
 28 2ozz_A Hypothetical protein YH  99.6 1.3E-14 5.4E-19  111.5   9.1  212   26-261     8-222 (231)
 29 3ksx_A Nitrate transport prote  99.5 1.4E-12 5.9E-17   98.6  12.8  203   32-255    27-242 (324)
 30 2x26_A Periplasmic aliphatic s  99.3 1.3E-10 5.3E-15   86.2  16.3  175   76-255    32-216 (308)
 31 3kg2_A Glutamate receptor 2; I  99.2   1E-09 4.4E-14   80.4  16.0  213   32-260   382-753 (823)
 32 1us5_A Putative GLUR0 ligand b  99.2 2.5E-10 1.1E-14   84.3  10.0  153   35-198    20-188 (314)
 33 2de3_A Dibenzothiophene desulf  99.1 2.7E-09 1.1E-13   77.8  12.1  127   76-203    47-231 (365)
 34 3n5l_A Binding protein compone  99.0 1.5E-09 6.3E-14   79.4   9.4  203   33-248     3-228 (310)
 35 3ix1_A N-formyl-4-amino-5-amin  99.0 4.1E-09 1.7E-13   76.7   9.8  173   76-255    34-221 (302)
 36 3hn0_A Nitrate transport prote  98.8 1.1E-08 4.7E-13   73.9   6.7  144   34-201     5-154 (283)
 37 3gxa_A Outer membrane lipoprot  98.3 1.1E-05 4.4E-10   55.0  12.1  183   29-235    18-227 (275)
 38 1xs5_A 29 kDa protein, membran  98.3 2.9E-06 1.2E-10   58.6   8.8  181   34-234     3-206 (241)
 39 3myu_A High affinity transport  98.2   2E-07 8.6E-12   65.9   1.0  206   32-248     6-307 (344)
 40 1p99_A Hypothetical protein PG  98.2 1.8E-05 7.4E-10   53.7  10.4  163   33-217    38-224 (295)
 41 3k2d_A ABC-type metal ION tran  98.2 1.6E-05 6.9E-10   53.8   9.7  184   33-234     5-210 (237)
 42 2g29_A Nitrate transport prote  98.0 4.3E-05 1.8E-09   51.2  10.0  185   77-264    64-279 (417)
 43 2hzl_A Trap-T family sorbitol/  97.9 6.3E-05 2.6E-09   50.1   9.3  149   61-220    52-238 (365)
 44 2nxo_A Hypothetical protein SC  97.9 8.4E-06 3.5E-10   55.7   4.2  197   35-255     8-218 (291)
 45 3b50_A Sialic acid-binding per  97.8 0.00035 1.5E-08   45.4  11.3  156   62-230    23-218 (310)
 46 2f5x_A BUGD; periplasmic bindi  97.8  0.0019 8.2E-08   40.7  14.4  233   58-311    30-305 (312)
 47 2zzv_A ABC transporter, solute  97.6 0.00031 1.3E-08   45.7   8.5  149   35-201    35-222 (361)
 48 1h3d_A ATP-phosphoribosyltrans  97.6 0.00063 2.7E-08   43.8   9.8  182   77-277    47-245 (299)
 49 2pfy_A Putative exported prote  97.5 0.00063 2.6E-08   43.8   8.9  156   61-230    21-213 (301)
 50 2pfz_A Putative exported prote  97.5  0.0021   9E-08   40.4  11.5  157   60-230    19-212 (301)
 51 2ql3_A Probable transcriptiona  97.4  0.0077 3.2E-07   36.9  13.1  181   32-235     3-193 (209)
 52 2dvz_A BUGE, putative exported  97.4 0.00052 2.2E-08   44.3   7.0  141   63-203    36-202 (314)
 53 3fxb_A Trap dicarboxylate tran  97.3  0.0013 5.5E-08   41.8   8.6  181   26-230     7-229 (326)
 54 2hpg_A ABC transporter, peripl  97.3  0.0035 1.5E-07   39.1  10.3  175   35-230    10-233 (327)
 55 2vpn_A Periplasmic substrate b  97.2  0.0014   6E-08   41.6   8.1  164   53-231    11-216 (316)
 56 2i49_A Bicarbonate transporter  97.2  0.0012   5E-08   42.0   7.2  215   32-264    34-287 (429)
 57 1xs5_A 29 kDa protein, membran  97.1  0.0011 4.7E-08   42.2   6.4   85  146-233     5-92  (241)
 58 2qpq_A Protein BUG27; alpha/be  97.1  0.0023 9.8E-08   40.2   8.1  145   58-203    21-189 (301)
 59 1nh8_A ATP phosphoribosyltrans  96.7  0.0043 1.8E-07   38.5   6.6  167   77-261    62-239 (304)
 60 2rin_A Putative glycine betain  96.5  0.0071   3E-07   37.1   6.9  132   62-198    24-179 (298)
 61 3gxa_A Outer membrane lipoprot  96.5  0.0047   2E-07   38.3   5.7   86  144-232    23-112 (275)
 62 2vd3_A ATP phosphoribosyltrans  96.5  0.0046 1.9E-07   38.4   5.6  182   77-277    46-235 (289)
 63 2hxr_A HTH-type transcriptiona  96.4   0.057 2.4E-06   31.4  14.9  188   32-244    28-225 (238)
 64 1p99_A Hypothetical protein PG  96.3  0.0086 3.6E-07   36.6   6.3   86  145-232    40-127 (295)
 65 3fzv_A Probable transcriptiona  96.2   0.068 2.9E-06   30.9  12.6  180   33-235    94-282 (306)
 66 3l6g_A Betaine ABC transporter  96.1   0.039 1.7E-06   32.4   8.8  120   76-198    30-166 (256)
 67 2b6d_A Lactotransferrin; compl  95.9  0.0079 3.3E-07   36.9   4.5  175   62-243    15-268 (345)
 68 1twy_A ABC transporter, peripl  95.7    0.11 4.5E-06   29.7   9.7  128   62-191    40-199 (290)
 69 3jv9_A OXYR, transcriptional r  95.5    0.13 5.6E-06   29.1  10.0  198   33-257     3-215 (219)
 70 3ho7_A OXYR; beta-alpha-barrel  95.5   0.082 3.4E-06   30.4   8.3  191   33-248    10-210 (232)
 71 1zbm_A Hypothetical protein AF  95.3    0.12 5.1E-06   29.3   8.7  252   33-342     9-276 (280)
 72 3ir1_A Outer membrane lipoprot  95.2   0.055 2.3E-06   31.5   6.6  174   35-234     2-204 (245)
 73 1al3_A Cys regulon transcripti  95.1    0.18 7.7E-06   28.2  13.6  198   62-277   110-316 (324)
 74 1ixc_A CBNR, LYSR-type regulat  94.9    0.21 8.8E-06   27.8  14.3  185   31-243    88-283 (294)
 75 1ryo_A Serotransferrin; iron t  94.5   0.069 2.9E-06   30.9   5.7  185   62-252    17-271 (327)
 76 2esn_A Probable transcriptiona  94.3    0.29 1.2E-05   26.9  11.2  154   75-236   129-293 (310)
 77 1o63_A ATP phosphoribosyltrans  94.2    0.13 5.3E-06   29.2   6.6  133   77-224    39-171 (219)
 78 2czl_A Hypothetical protein TT  94.2    0.18 7.6E-06   28.2   7.4  115   76-199    30-148 (272)
 79 2fyi_A HTH-type transcriptiona  94.2    0.29 1.2E-05   26.9   9.3  181   32-236    12-201 (228)
 80 3ix1_A N-formyl-4-amino-5-amin  94.1   0.038 1.6E-06   32.5   3.7   58   45-103    97-159 (302)
 81 3oxn_A Putative transcriptiona  94.1    0.31 1.3E-05   26.7  12.7  171   33-228    18-194 (241)
 82 3ecr_A Porphobilinogen deamina  94.1    0.31 1.3E-05   26.7  10.9  148   87-242    83-239 (364)
 83 2b4l_A Glycine betaine-binding  93.8    0.11 4.8E-06   29.5   5.6   83  160-258   110-195 (268)
 84 2x26_A Periplasmic aliphatic s  93.6    0.28 1.2E-05   27.0   7.3   53   51-103   102-159 (308)
 85 3fxq_A LYSR type regulator of   93.5    0.41 1.7E-05   26.0  14.7  196   32-249    90-296 (305)
 86 1gtk_A Porphobilinogen deamina  93.4    0.42 1.8E-05   25.9  12.3  145   87-242    65-217 (313)
 87 3k2d_A ABC-type metal ION tran  93.2     0.1 4.2E-06   29.8   4.6   58  146-203     8-69  (237)
 88 3ir1_A Outer membrane lipoprot  92.8   0.079 3.3E-06   30.5   3.5   81  146-229     3-87  (245)
 89 2vd2_A ATP phosphoribosyltrans  92.6    0.33 1.4E-05   26.5   6.5  129   77-224    48-180 (214)
 90 3ksx_A Nitrate transport prote  92.6    0.34 1.4E-05   26.5   6.5   56   48-103   125-185 (324)
 91 1i6a_A OXYR, hydrogen peroxide  92.0    0.13 5.4E-06   29.2   3.8  179   33-235     4-191 (219)
 92 1iej_A Ovotransferrin; iron, m  91.6    0.27 1.1E-05   27.2   5.1  170   62-236    18-259 (332)
 93 2h9b_A HTH-type transcriptiona  91.5    0.73 3.1E-05   24.4  13.0  166   61-243   106-284 (312)
 94 3o66_A Glycine betaine/carniti  91.3    0.76 3.2E-05   24.3   8.6  138   62-199    26-198 (282)
 95 2h98_A HTH-type transcriptiona  91.0    0.82 3.4E-05   24.1  15.3  189   32-248    88-289 (313)
 96 1z7m_E ATP phosphoribosyltrans  90.8    0.35 1.5E-05   26.4   5.0  137   77-226    43-180 (208)
 97 2hxw_A Major antigenic peptide  90.7    0.74 3.1E-05   24.4   6.6  134   62-199    17-172 (237)
 98 3mpk_A Virulence sensor protei  89.2    0.52 2.2E-05   25.3   4.8   70  158-235    60-129 (267)
 99 1ve4_A ATP phosphoribosyltrans  88.9     1.2   5E-05   23.0   6.6  128   76-224    45-176 (206)
100 2de3_A Dibenzothiophene desulf  88.8   0.086 3.6E-06   30.3   0.6   42   64-105   160-227 (365)
101 1uth_A LYSR-type regulatory pr  87.1     1.5 6.5E-05   22.3  11.5  145   76-231   134-286 (315)
102 1sbp_A Sulfate-binding protein  87.1     1.5 6.5E-05   22.3  10.4  123   76-199    34-194 (310)
103 1sw5_A Osmoprotection protein   86.8     1.6 6.8E-05   22.2   6.6  137   65-201    22-194 (275)
104 1h45_A Lactoferrin; metal tran  83.1     2.3 9.9E-05   21.2   6.5  186   62-253    18-277 (334)
105 3kht_A Response regulator; PSI  82.0     2.6 0.00011   20.9   6.4   58  142-199     2-60  (144)
106 2qmw_A PDT, prephenate dehydra  79.3     2.7 0.00011   20.8   4.8  128   48-196     7-147 (267)
107 3cvg_A Putative metal binding   77.9     3.5 0.00015   20.1   5.0   74   61-134    32-113 (294)
108 2d3i_A Ovotransferrin; aluminu  77.8     3.5 0.00015   20.1   5.1   86   60-151   354-456 (686)
109 3fd3_A Chromosome replication   75.5     4.1 0.00017   19.7  10.5  146   33-198     1-153 (208)
110 2i6e_A Hypothetical protein; N  75.1     4.2 0.00017   19.6   5.6  173   77-265    39-238 (301)
111 1vr5_A Oligopeptide ABC transp  75.0       4 0.00017   19.7   4.7   30  172-201   214-243 (547)
112 1r9l_A Glycine betaine-binding  73.7     4.5 0.00019   19.4   6.3  134   62-199    25-190 (309)
113 3mwb_A Prephenate dehydratase;  73.1     2.8 0.00012   20.7   3.5  129   46-189     8-147 (313)
114 1b43_A Protein (FEN-1); nuclea  70.9     5.2 0.00022   19.0   4.7  135  158-314   133-268 (340)
115 3omb_A Extracellular solute-bi  70.5     2.5  0.0001   21.0   2.8   42   60-104    57-103 (535)
116 3op9_A PLI0006 protein; struct  68.2     3.4 0.00014   20.2   3.0   54  236-297    16-69  (114)
117 2qmx_A Prephenate dehydratase;  67.3     6.2 0.00026   18.5   5.8  133   47-207     9-158 (283)
118 3c9h_A ABC transporter, substr  66.6     6.4 0.00027   18.4  10.4  104  173-277   210-319 (355)
119 3luy_A Probable chorismate mut  62.9     7.5 0.00032   18.0   6.2  111   76-206    36-163 (329)
120 2pju_A Propionate catabolism o  61.7     7.9 0.00033   17.8   6.8  146   44-201     5-165 (225)
121 1blf_A Lactoferrin; transferri  58.8     8.9 0.00037   17.5   7.4  171   61-237   355-605 (689)
122 3mc2_A Inhibitor of carbonic a  55.9     9.9 0.00042   17.2   7.0   88   60-151   351-459 (687)
123 2ict_A Antitoxin HIGA; helix-t  55.3     8.8 0.00037   17.6   3.3   55  237-299    16-70  (94)
124 1atg_A MODA, periplasmic molyb  54.2      11 0.00044   17.0  11.7  136   62-200    16-167 (231)
125 1cb6_A Protein (lactoferrin);   53.8      11 0.00045   17.0   6.7   22  130-151   440-461 (691)
126 1pot_A POTD, spermidine/putres  49.9      12 0.00052   16.6   7.5  194   62-261    18-275 (325)
127 1u7z_A Coenzyme A biosynthesis  48.4      13 0.00055   16.5   4.0   19  180-198   156-174 (226)
128 3f6w_A XRE-family like protein  48.3      12  0.0005   16.7   3.0   45  251-301    34-78  (83)
129 3gzg_A Molybdate-binding perip  45.5      14 0.00061   16.2  10.8  135   62-199    39-192 (253)
130 2p8j_A S-adenosylmethionine-de  45.1      12 0.00049   16.7   2.6   68   35-107    27-100 (209)
131 1xvx_A YFUA; periplasmic iron   44.9      15 0.00062   16.1  13.6  135   62-200    20-199 (312)
132 2r1j_L Repressor protein C2; p  44.9      14  0.0006   16.2   3.0   54  237-298    13-66  (68)
133 2qry_A Thiamine-binding peripl  43.6      15 0.00065   16.0  13.9  201   32-245    21-270 (330)
134 1h76_A Serotransferrin; iron t  42.2      16 0.00068   15.9   6.6   37   62-101   357-394 (696)
135 3ivp_A Putative transposon-rel  41.8      13 0.00055   16.5   2.4   11  181-191    40-50  (126)
136 3cec_A Putative antidote prote  41.7      15 0.00064   16.0   2.7   55  237-299    26-80  (104)
137 2ewt_A BLDD, putative DNA-bind  41.3       9 0.00038   17.5   1.5   52  237-296    16-69  (71)
138 2voz_A FUTA2, periplasmic iron  39.6      18 0.00075   15.6   4.9  224   76-304    55-344 (346)
139 1wn9_A The hypothetical protei  39.2      12 0.00051   16.7   1.9   31  220-257    57-87  (131)
140 3f52_A CLP gene regulator (CLG  39.0      17  0.0007   15.8   2.6   53  237-297    36-88  (117)
141 1y7y_A C.AHDI; helix-turn-heli  37.8      15 0.00065   16.0   2.3   52  237-296    21-72  (74)
142 1adr_A P22 C2 repressor; trans  37.5      19 0.00081   15.4   3.0   43  250-298    24-66  (76)
143 2kpj_A SOS-response transcript  37.4      16 0.00066   15.9   2.3   42  250-297    28-69  (94)
144 3ek3_A Nitroreductase; YP_2117  37.0      10 0.00044   17.1   1.3   46  235-280   108-156 (190)
145 3kxa_A NGO0477 protein, putati  36.3      19 0.00078   15.5   2.5   58  236-301    75-132 (141)
146 3lpm_A Putative methyltransfer  35.7      20 0.00086   15.2   4.7   71   35-106    53-129 (259)
147 3omt_A Uncharacterized protein  35.5      13 0.00053   16.5   1.5   53  236-296    15-67  (73)
148 3bs3_A Putative DNA-binding pr  34.7      13 0.00056   16.4   1.5   51  238-296    19-69  (76)
149 3mlf_A Transcriptional regulat  34.7      13 0.00057   16.4   1.6   53  236-296    30-82  (111)
150 2noo_A NIKA, nickel-binding pe  34.6      21 0.00088   15.2   2.5   26  171-196   194-219 (502)
151 2k9q_A Uncharacterized protein  33.7      21 0.00089   15.1   2.4   38  240-277    11-48  (77)
152 3bdn_A Lambda repressor; repre  32.3      18 0.00075   15.6   1.9   13   59-71     57-69  (236)
153 1vmd_A MGS, methylglyoxal synt  32.2      23 0.00098   14.9   3.5   53  138-196    47-104 (178)
154 3clc_A Regulatory protein; pro  32.2      23 0.00098   14.9   2.6   48  243-298    25-72  (82)
155 3hhg_A Transcriptional regulat  31.8      13 0.00056   16.4   1.2  147   78-235   122-277 (306)
156 3eod_A Protein HNR; response r  31.4      24   0.001   14.8   6.7   55  143-199     5-60  (130)
157 2b5a_A C.BCLI; helix-turn-heli  31.0      24   0.001   14.7   3.7   44  250-299    29-72  (77)
158 1b0n_A Protein (SINR protein);  31.0      24   0.001   14.7   2.4   40  251-296    21-61  (111)
159 3kz3_A Repressor protein CI; f  30.6      17 0.00071   15.7   1.5   41  250-296    31-71  (80)
160 1rxw_A Flap structure-specific  29.8      26  0.0011   14.6   6.3  132  158-312   132-264 (336)
161 1utx_A CYLR2; DNA-binding prot  28.1      27  0.0011   14.4   2.5   51  237-295     9-59  (66)
162 1xxl_A YCGJ protein; structura  27.5      28  0.0012   14.4   3.5   68   35-106    25-97  (239)
163 3dr5_A Putative O-methyltransf  27.4      28  0.0012   14.4   3.2   70   34-103    59-136 (221)
164 2fjr_A Repressor protein CI; g  27.0      29  0.0012   14.3   2.7   13  121-133   117-129 (189)
165 1r69_A Repressor protein CI; g  26.9      27  0.0011   14.5   2.0   52  238-298    10-61  (69)
166 2gpy_A O-methyltransferase; st  26.5      29  0.0012   14.3   2.3   73   30-103    53-133 (233)
167 3f9i_A 3-oxoacyl-[acyl-carrier  26.4      29  0.0012   14.2   6.8   13   95-107    83-95  (249)
168 2eby_A Putative HTH-type trans  26.4      29  0.0012   14.2   2.8   43  250-298    30-72  (113)
169 2rjn_A Response regulator rece  25.7      30  0.0013   14.2   5.8   55  143-199     5-60  (154)
170 2ji4_A Phosphoribosyl pyrophos  25.2      31  0.0013   14.1   6.3  117   61-198    42-177 (379)
171 1zug_A Phage 434 CRO protein;   25.1      30  0.0013   14.2   2.0   42  250-298    22-63  (71)
172 2qm3_A Predicted methyltransfe  25.1      31  0.0013   14.1   3.7   14  171-184   196-209 (373)
173 1wo8_A Methylglyoxal synthase;  24.7      31  0.0013   14.0   3.6   53  138-196    21-78  (126)
174 2jna_A Putative secreted prote  23.4    0.87 3.7E-05   23.9  -6.2   34    1-34      1-34  (104)
175 2v84_A Spermidine/putrescine A  23.0      34  0.0014   13.8   6.0  207   34-260    25-298 (343)
176 2yvq_A Carbamoyl-phosphate syn  23.0      34  0.0014   13.8   3.5   51  140-196    43-102 (143)
177 2a3m_A COG3005: nitrate/TMAO r  22.0      16 0.00065   16.0   0.0   19    1-19      1-19  (130)
178 2a6c_A Helix-turn-helix motif;  21.8      36  0.0015   13.7   1.9   27  251-277    38-65  (83)
179 3b7h_A Prophage LP1 protein 11  21.8      36  0.0015   13.7   2.1   51  238-296    16-67  (78)
180 1ixh_A Phosphate-binding prote  21.6      27  0.0012   14.4   1.2   56   76-132    29-84  (321)
181 1cyd_A Carbonyl reductase; sho  21.3      37  0.0015   13.6   8.6   13   95-107    75-87  (244)
182 3m6m_D Sensory/regulatory prot  21.3      37  0.0015   13.6   5.7   60  138-199     7-67  (143)
183 3eki_A High affinity transport  20.8      24   0.001   14.8   0.8  117  132-251   232-370 (403)
184 3gem_A Short chain dehydrogena  20.7      38  0.0016   13.5   6.1  164  136-316    18-190 (260)

No 1  
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=100.00  E-value=0  Score=313.77  Aligned_cols=231  Identities=19%  Similarity=0.267  Sum_probs=214.6

Q ss_pred             HCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCC----CCEEEEEECCCCCCHHHHHC
Q ss_conf             01244216899985794999871789883068898988015099999999996798----22025998143100267743
Q gi|254780170|r   19 SFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDD----PSKIQYLPLNAKERFLALQS   94 (342)
Q Consensus        19 ~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd----~~kVe~v~~~~~~rf~aL~s   94 (342)
                      ++++++++|++|+++|+|+||++.++|||+|.|++|+++||+|||+++||+.++.+    ..+|+|++++|..++.+|++
T Consensus         2 ~~~aa~~~l~~i~~~g~l~Vg~~~~~~P~~~~d~~G~~~G~~vDl~~~ia~~l~~~l~~~~~~v~~~~~~~~~~~~~L~~   81 (287)
T 2vha_A            2 AAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQN   81 (287)
T ss_dssp             -CCCTTSHHHHHHHHTEEEEEECSEETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHT
T ss_pred             CCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHC
T ss_conf             86655210999970998999986898893689999988886699999999997477377870699998799999999986


Q ss_pred             CCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             96279981243253201102784353223440234630211347536417862034313426999999998629985078
Q gi|254780170|r   95 KQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPI  174 (342)
Q Consensus        95 G~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v  174 (342)
                      |++|++++++++|.+|+  ..+.|+.||++.++++++|+++++++++||+|++|||..||+++..+.+++...+..++++
T Consensus        82 G~~Di~~~~~~~t~~R~--~~~~fs~p~~~~~~~l~~~k~~~i~~~~dL~g~~v~v~~gs~~~~~l~~~~~~~~~~~~iv  159 (287)
T 2vha_A           82 GTFDFECGSTTNNVERQ--KQAAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRII  159 (287)
T ss_dssp             TSCSEECSSCBCCHHHH--TTCEEEEEEEEEEEEEEEETTSSCCSGGGGTTCEEEEETTSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCCEEECCCCCCHHHH--HHCCCCCCCCCCCCEEEEECCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             99643411344664565--4324554300047257775489878987808981221378669999999888737896346


Q ss_pred             EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             74798999999873960299825047999998367800100256444237101000277757999988774433112
Q gi|254780170|r  175 VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA  251 (342)
Q Consensus       175 ~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A  251 (342)
                      .|++..++++++.+||||+++.|.+.+.........++.+.++++.++++|++++|+++|++|.+.++..+..|.+-
T Consensus       160 ~~~~~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~av~k~~~~L~~~in~~l~~l~~~  236 (287)
T 2vha_A          160 SAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTS  236 (287)
T ss_dssp             EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHT
T ss_pred             ECCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             52217899999986994099961499999999657888679937877763189999489999999999999999978


No 2  
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=100.00  E-value=1.4e-43  Score=295.00  Aligned_cols=240  Identities=25%  Similarity=0.323  Sum_probs=209.8

Q ss_pred             CHHHHHHHHHHHHH---HHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECC-CCCEEEEHHHHHHHHHHHHCCCCC
Q ss_conf             91389999999999---99840124421689998579499987178988306889-898801509999999999679822
Q gi|254780170|r    1 MYKDFFVSILCLII---LFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKA-NGDWKGFDVDFCRALSSAIFDDPS   76 (342)
Q Consensus         1 M~K~~l~~~l~l~~---~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~-~G~~~GfDVDl~raiAaal~gd~~   76 (342)
                      |+|.++..+ ++++   +.+.++.++.++|++|+++|+|+||+..++|||+|.|. +|++.||++|+++++|..+++...
T Consensus         3 ~~k~l~~~~-~~~l~~~~~~~~~~~a~~~l~~i~~~~~l~V~~~~~~pP~~~~d~~~g~~~G~~~di~~~ia~~~~~~~~   81 (259)
T 2v25_A            3 FRKSLLKLA-VFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDK   81 (259)
T ss_dssp             ---------------------------CHHHHHHHHTCEEEEECSEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHCCCEEEEEECCCCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCCC
T ss_conf             379999999-9999999872331113265999960998999982897883246678984888986476568887278875


Q ss_pred             EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCH
Q ss_conf             02599814310026774396279981243253201102784353223440234630211347536417862034313426
Q gi|254780170|r   77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTT  156 (342)
Q Consensus        77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~  156 (342)
                      +|++++.+|..+++++++|++|+.+.+++.|++|+  ..++|+.||+.++..+++++++++++++||+|++|||+.||+.
T Consensus        82 ~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~r~--~~~~fs~p~~~~~~~~~~~~~~~i~s~~dL~g~~I~v~~gs~~  159 (259)
T 2v25_A           82 KIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERK--RIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATT  159 (259)
T ss_dssp             SEEEEECCTTTHHHHHHTTSCSEECSSCBCCHHHH--TTEEECSCSEEEEEEEEEEGGGCCCSGGGCTTCEEEEETTCSH
T ss_pred             EEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHH--HCEEECEEEECCCCCEEEECCCCCCCHHHHCCCCCCEECCCCH
T ss_conf             79999833775899997699660033366897881--0114220344045430220357979978926985002347707


Q ss_pred             HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH
Q ss_conf             99999999862998507874798999999873960299825047999998367800100256444237101000277757
Q gi|254780170|r  157 ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE  236 (342)
Q Consensus       157 e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~  236 (342)
                      +..+.++++..+++++++.|++.++++.+|.+|||||++.|...+..+.     ...+.++++.++.||++++++++|++
T Consensus       160 ~~~l~~~~~~~~~~~~~~~~~s~~~~~~~l~~g~vDa~i~d~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~k~~~~  234 (259)
T 2v25_A          160 KKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYV-----DDKSEILPDSFEPQSYGIVTKKDDPA  234 (259)
T ss_dssp             HHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTC-----CTTEEECSCCCSEEEECCEEETTCHH
T ss_pred             HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEEECCHHHHHHHH-----HHCCCCCCCCCCCEEEEEEEECCCHH
T ss_conf             7889999987088444421420788876542783789973599999999-----73974357877732699999589999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999988774433
Q gi|254780170|r  237 WYNIVSWTHYAM  248 (342)
Q Consensus       237 w~d~V~W~~~al  248 (342)
                      |.+.++..+..|
T Consensus       235 l~~~ln~~l~~~  246 (259)
T 2v25_A          235 FAKYVDDFVKEH  246 (259)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999982


No 3  
>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=100.00  E-value=8.1e-43  Score=290.17  Aligned_cols=246  Identities=22%  Similarity=0.299  Sum_probs=208.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHCC----------CCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHH
Q ss_conf             913899999999999984012----------4421689998579499987178988306889898801509999999999
Q gi|254780170|r    1 MYKDFFVSILCLIILFFTSFS----------TNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSA   70 (342)
Q Consensus         1 M~K~~l~~~l~l~~~~~~~~a----------a~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaa   70 (342)
                      ||..+-.++++++++++.++.          ..+++|++|+++|+|+||+..++|||+|.|++|+++||++|++++||++
T Consensus         1 ~k~~~~~~~~~l~l~~~~~~~a~~~~~~~~~~~~~~l~~i~~~g~l~Vgv~~~~pP~~~~d~~G~~~G~~~Dl~~~ia~~   80 (292)
T 1xt8_A            1 MKYLLPTAAAGLLLLAAQPAMAMASGGNSDSKTLNSLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKE   80 (292)
T ss_dssp             ---------------------------------CCHHHHHHHHSSEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHH
T ss_conf             94189999999999999999997257876666557199986099899998589899069999998873068999999998


Q ss_pred             HCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEE
Q ss_conf             67982202599814310026774396279981243253201102784353223440234630211347536417862034
Q gi|254780170|r   71 IFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICV  150 (342)
Q Consensus        71 l~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v  150 (342)
                      ++++..+|+|++++|.+++.+|.+|++|+.++++++|++|+.  .++|+.|||.+++.+++++++++++++||+|++|||
T Consensus        81 Lg~~~~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~~R~~--~~~fs~py~~~~~~~~~~~~~~i~~~~dL~g~~V~v  158 (292)
T 1xt8_A           81 LFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAE--QVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLL  158 (292)
T ss_dssp             HHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHT--TEEECCCCEEEEEEEEEETTCCCCSSGGGTTSEEEE
T ss_pred             HCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHC--CCCCCCCEEECCCEEEEECCCCCCCHHHHHHCEEEE
T ss_conf             558971799996347868999986997711355656711210--246675347415137872245767477770066775


Q ss_pred             EECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC
Q ss_conf             31342699999999862998507874798999999873960299825047999998367800100256444237101000
Q gi|254780170|r  151 QAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI  230 (342)
Q Consensus       151 ~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av  230 (342)
                      +.|++.+..+    .++..+++++.|++.++++++|.+|+||+++.|.+.+......  +|+...+.++.++++|++++|
T Consensus       159 ~~g~~~~~~l----~~~~~~~~~v~~~~~~~~~~~l~~G~vDa~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iav  232 (292)
T 1xt8_A          159 NKGTTADAYF----TQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKD--HPDFKMGIKELGNKDVIAPAV  232 (292)
T ss_dssp             ETTSHHHHHH----HHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHH--CTTEEEEEEEEEEEEEECCEE
T ss_pred             ECCCHHHHHH----HHHHHHHHHEEECCCCCHHHHHHCCCEEEEEECHHHHHHHHHH--CCCCEEECCCCCCCCEEEEEE
T ss_conf             1585899999----9710000000000222011244369369999569999999997--899789414678773399999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             277757999988774433112123
Q gi|254780170|r  231 IQGDTEWYNIVSWTHYAMVTAEEL  254 (342)
Q Consensus       231 r~gD~~w~d~V~W~~~ali~Aee~  254 (342)
                      |++|++|.+.++..+..|.+-.++
T Consensus       233 ~k~~~~L~~~ln~~l~~l~~~G~~  256 (292)
T 1xt8_A          233 KKGDKELKEFIDNLIIKLGQEQFF  256 (292)
T ss_dssp             ETTCHHHHHHHHHHHHHHHTTTHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHCCHH
T ss_conf             799999999999999999977869


No 4  
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=100.00  E-value=1.7e-37  Score=256.52  Aligned_cols=222  Identities=16%  Similarity=0.181  Sum_probs=195.9

Q ss_pred             HHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCC
Q ss_conf             98401244216899985794999871789883068898988015099999999996798220259981431002677439
Q gi|254780170|r   16 FFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK   95 (342)
Q Consensus        16 ~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG   95 (342)
                      +.++.+...+++++++++++|+||++.++|||+|.|++|+++||++|+++++++.++   .+++|++++|..++.+|.+|
T Consensus         3 ~~~~~a~~~~~~~~~~~~~~l~vg~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~lg---~~v~~~~~~~~~~~~~l~~g   79 (268)
T 3hv1_A            3 LRSHFATQKDQWQTYTKEKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKLYG---IDVEWQAIDWDMKETELKNG   79 (268)
T ss_dssp             -CCTTGGGSCCHHHHHHHTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHTTT---CEEEEEECCGGGHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEECCCCHHHHHHHHHCC
T ss_conf             665344544159998609979999878988955899999888729999999999969---96575158889999999869


Q ss_pred             CEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHH---HHHCCCCCC
Q ss_conf             62799812432532011027843532234402346302113475364178620343134269999999---986299850
Q gi|254780170|r   96 QIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADY---FKAHNMKYH  172 (342)
Q Consensus        96 ~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~---~~~~~~~~~  172 (342)
                      ++|++++.+++|++|+  ..+.|+.||+++...+++|+++++++++||+|++|||..||+....+...   .+......+
T Consensus        80 ~~Di~~~~~~~~~~r~--~~~~~s~py~~~~~~~v~~~~~~~~~~~dl~~~~i~v~~gs~~~~~~~~~~~~~~~~~~~~~  157 (268)
T 3hv1_A           80 TIDLIWNGYSVTDERK--QSADFTEPYMVNEQVLVTKKSSGIDSVAGMAGKTLGAQAGSSGYDAFNASPKILKDVVANQK  157 (268)
T ss_dssp             SCSEECSSCBCCHHHH--TTCEECCCCEEECEEEEEEGGGCCCSSGGGTTCCEEEETTCHHHHHHHHCTTTTTTTSGGGC
T ss_pred             CCCCCCCCCCCCHHHH--HCEEECCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf             9760023266785444--11563212135643689868999999789579823886685099999986655543166732


Q ss_pred             EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             7874798999999873960299825047999998367800100256444237101000277757999988
Q gi|254780170|r  173 PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVS  242 (342)
Q Consensus       173 ~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~  242 (342)
                      ++.|++..+++.+|.+||||+++.|...+.......+..+.+.+++..++.+|++++++++|++|.+.++
T Consensus       158 i~~~~~~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in  227 (268)
T 3hv1_A          158 VVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKIN  227 (268)
T ss_dssp             EEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf             4403999999999976975799943899999998589888303337777774389998189999999999


No 5  
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis}
Probab=100.00  E-value=1.3e-35  Score=244.43  Aligned_cols=221  Identities=14%  Similarity=0.204  Sum_probs=186.9

Q ss_pred             CHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC
Q ss_conf             21689998579499987178988306889898801509999999999679822025998143100267743962799812
Q gi|254780170|r   24 ASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN  103 (342)
Q Consensus        24 a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~  103 (342)
                      ..+....++.++|+||++.++|||+|.|++|+++||++|+++++|+.+.|  .+++|++++|..++..|++|++|+++++
T Consensus         6 ~~~~a~~~~~~~i~V~~~~~~pP~~~~~~~g~~~G~~vDl~~~ia~~l~g--~~v~~~~~~~~~~~~~l~~g~~D~i~~~   83 (258)
T 2o1m_A            6 QTTGAGQKKVQTITVGTGTQFPNICFIDEKGDLTGYDVELIKELDKRLPH--YKFTFKTMEFSNLLVSLGQHKVDIVAHQ   83 (258)
T ss_dssp             --------CCEEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHCTT--EEEEEEECCHHHHHHHHHTTSSSEEEEE
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHCCCCCEEEEC
T ss_conf             55655456699899998999798069999996887599999999987289--8589997899999999977998889634


Q ss_pred             CCCCCCCHHCCCCCCCCCCCCCCEEEE-EECC-CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCE-EEECCHH
Q ss_conf             432532011027843532234402346-3021-134753641786203431342699999999862998507-8747989
Q gi|254780170|r  104 TDWTLLREISLGLAFRPITYFDGQGFI-MHKK-KGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHP-IVFERVE  180 (342)
Q Consensus       104 ~T~T~~Rd~~~~v~Fs~~~~~dgq~~l-Vrk~-~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~  180 (342)
                      +++|++|+..  ++|+.|+|+....++ ++++ ..+++++||+|++||++.||+.+..+..+...++..... +.+++.+
T Consensus        84 ~~~~~er~~~--~~fs~~~~~~~~~~~~~~~~~~~i~~~~dL~gk~igv~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~  161 (258)
T 2o1m_A           84 MEKSKEREKK--FLFNKVAYNHFPLKITVLQNNDTIRGIEDLKGKRVITSATSNGALVLKKWNEDNGRPFEIAYEGQGAN  161 (258)
T ss_dssp             ECCCHHHHHH--CEECSSCCEEEEEEEEEETTCCSCSSGGGCTTCEEEECSSSHHHHHHHHHHHHTTCCSEEEECCSSTT
T ss_pred             CCCCHHHHHH--CCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCHH
T ss_conf             7678788753--13675422355428998513676551544579889870787499999999997188742010368899


Q ss_pred             HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999987396029982504799999836780010025644423710100027775799998877443311
Q gi|254780170|r  181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT  250 (342)
Q Consensus       181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~  250 (342)
                      +++.+|.+||+|+++.|...+......  .+.+..++.+.+..+|++++++++|++|.+.++..+..|..
T Consensus       162 ~~~~~L~~grvD~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~ln~~l~~~~~  229 (258)
T 2o1m_A          162 ETANQLKSGRADATISTPFAVDFQNKT--STIKEKTVGNVLSNAKVYFMFNKNEQTLSDDIDKALQEIID  229 (258)
T ss_dssp             HHHHHHHHTSCSBEEECHHHHHHHHHH--CSSCEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEEECHHHHHHHHHH--CCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             999998659546999169999999852--78865881566777518999959999999999999999996


No 6  
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=100.00  E-value=5.4e-35  Score=240.57  Aligned_cols=219  Identities=16%  Similarity=0.103  Sum_probs=183.6

Q ss_pred             CCCCHHHHHHHHCCEEEEEEECCCCCCEEECC---CCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCE
Q ss_conf             24421689998579499987178988306889---898801509999999999679822025998143100267743962
Q gi|254780170|r   21 STNASILGDIKKRGFLKCGINTGLVGFAEVKA---NGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQI   97 (342)
Q Consensus        21 aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~---~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~v   97 (342)
                      ++....+++|+++|+|+||++.++|||+|.|.   +|+++||++|+++++++.++   .+++|++++|+.++.+|++|++
T Consensus         8 ~~~~~~~~~i~~~~~l~V~~~~~~~P~~~~~~~~~~g~~~G~~vDl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~   84 (271)
T 2iee_A            8 DSKDTGWEQIKDKGKIVVATSGTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLG---LKVEFKEMGIDGMLTAVNSGQV   84 (271)
T ss_dssp             ----CCHHHHHHHTEEEEEECSCBTTTBEEETTTTCCEEECHHHHHHHHHHHHTT---CEEEEEECCSTTHHHHHHHTSS
T ss_pred             CCCCCHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCC
T ss_conf             7776539998449979999889988967883689999678879999999999839---9648998999999999976997


Q ss_pred             EEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECC--CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             7998124325320110278435322344023463021--13475364178620343134269999999986299850787
Q gi|254780170|r   98 DILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKK--KGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIV  175 (342)
Q Consensus        98 Dil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~--~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~  175 (342)
                      |+++++++++.+|.  ..+.|+.||++.+..++++++  +.+++++||+|++||+..|+..+..+    +.......++.
T Consensus        85 D~~~~~~~~~~~r~--~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~dl~g~~v~v~~g~~~~~~l----~~~~~~~~i~~  158 (271)
T 2iee_A           85 DAAANDIDVTKDRE--EKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAAGAATTVYMEVA----RKYGAKEVIYD  158 (271)
T ss_dssp             SEECSSCBCCHHHH--TTEEECCCSEEEEEEEEECTTTGGGCSSGGGGTTCEEESCTTSHHHHHH----HHTTCEEEECS
T ss_pred             CEEECCCCCCHHHH--HHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCEEEECCCCHHHHHH----HHCCCCCEEEE
T ss_conf             74402454687887--6542056622157623675047777798788079458971685899999----97089858998


Q ss_pred             ECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             4798999999873960299825047999998367800100256-4442371010002777579999887744331
Q gi|254780170|r  176 FERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIISKSPLAPAIIQGDTEWYNIVSWTHYAMV  249 (342)
Q Consensus       176 ~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~iskEPlg~avr~gD~~w~d~V~W~~~ali  249 (342)
                      +++..+++.+|.+||||+++.|...+.......+... ..+.+ ..+..+|++++++++|++|.+.++..+..|.
T Consensus       159 ~~s~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~L~~~ln~~l~~i~  232 (271)
T 2iee_A          159 NATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLN-ITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMS  232 (271)
T ss_dssp             SCCHHHHHHHHHHTSSCEEEEEHHHHHHHHHHCTTSS-CEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC-EEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             2360889999976953499924999999998689974-6866676656612899994899999999999999999


No 7  
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, thermophilic bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=100.00  E-value=2e-34  Score=236.96  Aligned_cols=216  Identities=18%  Similarity=0.134  Sum_probs=182.1

Q ss_pred             HHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECC
Q ss_conf             16899985794999871789883068898988015099999999996798220259981431002677439627998124
Q gi|254780170|r   25 SILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNT  104 (342)
Q Consensus        25 ~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~  104 (342)
                      +..+.+.++++|+||++.++|||+|.+ +|+++||++|++++||+.++   .+++|++++|..++..|++|++|++++++
T Consensus        33 ~~~~~~~~~~~l~Vg~~~~~~P~~~~~-~G~~~G~~vDl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~d~~~~~~  108 (272)
T 2pvu_A           33 SGGDGGATKKKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAG---LDYELKNIGWDPLFASLQSKEVDMGISGI  108 (272)
T ss_dssp             -----CCCCCCEEEEECCCBTTTBEEE-TTEEESHHHHHHHHHHHHHT---CCEEEEECCHHHHHHHHHHTSSSEECSSC
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCEEEE-CCEEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf             666555558989999899878935856-99778819999999999809---96599977989999999759966895145


Q ss_pred             CCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHH
Q ss_conf             32532011027843532234402346302113475364178620343134269999999986299850787479899999
Q gi|254780170|r  105 DWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDA  184 (342)
Q Consensus       105 T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~  184 (342)
                      ++|++|+.  .++|+.|||+++..+++|+++.+++..+|.|++|+++.|++.+..+..++.   ...+++.+++..+++.
T Consensus       109 ~~t~~R~~--~~~~s~p~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~g~~~~~~~~~~~~---~~~~i~~~~~~~~~~~  183 (272)
T 2pvu_A          109 TITDERKQ--SYDFSDPYFEATQVILVKQGSPVKNALDLKGKTIGVQNATTGQEAAEKLFG---KGPHIKKFETTVVAIM  183 (272)
T ss_dssp             BCCHHHHT--TEEECSCCEEECEEEEEETTCCCCSGGGGTTSCEEEETTSHHHHHHHHHHC---SSTTEEEESSHHHHHH
T ss_pred             CCCHHHHC--CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHC---CCCEEEECCCHHHHHH
T ss_conf             57877741--055674630563789974487678858867985776257639999998734---4873430420899999


Q ss_pred             HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9873960299825047999998367800100256--444237101000277757999988774433112
Q gi|254780170|r  185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA  251 (342)
Q Consensus       185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A  251 (342)
                      +|.+||+|+++.|...+.......++ ....++.  ..++.+++++++++ |++|.+.++..+..|.+-
T Consensus       184 ~l~~GrvD~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~ln~al~~~~~d  250 (272)
T 2pvu_A          184 ELLNGGVDAVITDNAVANEYVKNNPN-KKLQVIEDPKNFASEYYGMIFPK-NSELKAKVDEALKNVINS  250 (272)
T ss_dssp             HHHTTSCSEEEEEHHHHHHHHHHCGG-GCEEEECCTTTSCCEEECCEEET-TCTTHHHHHHHHHHHHHT
T ss_pred             HHHCCCCCEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHC
T ss_conf             99859811652665989999985899-87699516766676159999789-989999999999999969


No 8  
>2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=100.00  E-value=2.8e-33  Score=229.77  Aligned_cols=222  Identities=17%  Similarity=0.167  Sum_probs=179.9

Q ss_pred             CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEE
Q ss_conf             42168999857949998717898830688989880150999999999967982202599814310026774396279981
Q gi|254780170|r   23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSR  102 (342)
Q Consensus        23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~  102 (342)
                      ..++|++|+++|+||||+ .++|||+|.|++|+++||++|+++++|+.++..  .+.+...+|..++.+|++|++|++++
T Consensus         2 ~~~~l~~i~~~g~lrV~~-~~~pP~~~~~~~G~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~~~~~l~~g~~D~~~~   78 (257)
T 2q88_A            2 DENKLEELKEQGFARIAI-ANEPPFTAVGADGKVSGAAPDVAREIFKRLGVA--DVVASISEYGAMIPGLQAGRHDAITA   78 (257)
T ss_dssp             CTTHHHHHHHHTEEEEEE-CCCTTTCEECTTCCEESHHHHHHHHHHHHTTCC--EEEEEECCGGGHHHHHHTTSCSEECS
T ss_pred             CCCHHHHHHCCCEEEEEE-CCCCCCEEECCCCCEEEHHHHHHHHHHHHHCCC--EEEEECCCHHHHHHHHHCCCCCEEEE
T ss_conf             645899998299699998-689994479999988878999999999993997--79984699999999997599884776


Q ss_pred             CCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC--C---CCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             2432532011027843532234402346302113--4---7536417862034313426999999998629985078747
Q gi|254780170|r  103 NTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG--I---SSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFE  177 (342)
Q Consensus       103 ~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~--i---~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~  177 (342)
                      ++++|++|.  ..++|+.||+..++.+++++++.  +   .++.++.|++|++..|++.+..+.   .......+++.|+
T Consensus        79 ~~~~t~~r~--~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~~~---~~~~~~~~i~~~~  153 (257)
T 2q88_A           79 GLFMKPERC--AAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLAL---EAGVPRDRVIVVP  153 (257)
T ss_dssp             CCBCCHHHH--TTSEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHH---HTTCCGGGEEECS
T ss_pred             EEECCHHHC--CHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHH---HCCCCCCCEEEEH
T ss_conf             434154324--31005866112673146753641133313345414785699835856999999---8189866223200


Q ss_pred             CHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC--CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9899999987396029982504799999836780010025644--423710100027775799998877443311212
Q gi|254780170|r  178 RVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI--ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEE  253 (342)
Q Consensus       178 ~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~--iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee  253 (342)
                      +.++++.+|.+||+|+++.|...+.........++ ..+....  ....+++++++++|+++.+.++..+..|..-.+
T Consensus       154 ~~~~~~~~l~~GrvD~~v~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~k~~~~L~~~in~~l~~~~~~G~  230 (257)
T 2q88_A          154 DGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPN-VEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGE  230 (257)
T ss_dssp             SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTT-EEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC-EEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH
T ss_conf             16788899876964799965999999998479998-699615667763116899889999999999999999996949


No 9  
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=100.00  E-value=6.9e-33  Score=227.25  Aligned_cols=207  Identities=20%  Similarity=0.237  Sum_probs=180.1

Q ss_pred             CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC
Q ss_conf             94999871789883068898988015099999999996798220259981431002677439627998124325320110
Q gi|254780170|r   34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS  113 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~  113 (342)
                      .+|+||++.++|||+|.+ +|+++||++|+++++|+.++   .+++|++++|..++.+|.+|++|++++++++|++|+  
T Consensus         3 k~l~v~~~~~~pP~~~~~-~g~~~G~~~dl~~~ia~~~g---~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~--   76 (226)
T 1wdn_A            3 KKLVVATDTAFVPFEFKQ-GDLYVGFDVDLWAAIAKELK---LDYELKPMDFSGIIPALQTKNVDLALAGITITDERK--   76 (226)
T ss_dssp             -CEEEEEESSBTTTBEEE-TTEEESHHHHHHHHHHHHHT---CCEEEEEECGGGHHHHHHTTSSSEEEEEEECCHHHH--
T ss_pred             CEEEEEECCCCCCEEEEE-CCEEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHC--
T ss_conf             509999899978848811-99588879999999999969---966999789999999987699865744212354132--


Q ss_pred             CCCCCCCCCCCCCEEEEEECC-CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEE
Q ss_conf             278435322344023463021-1347536417862034313426999999998629985078747989999998739602
Q gi|254780170|r  114 LGLAFRPITYFDGQGFIMHKK-KGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCD  192 (342)
Q Consensus       114 ~~v~Fs~~~~~dgq~~lVrk~-~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~D  192 (342)
                      ..++|+.||+.++..++++++ ..+++++||+|++||+..|++.+.    +++......+++.+++..+++.++.+||||
T Consensus        77 ~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dl~g~~v~~~~g~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~g~vD  152 (226)
T 1wdn_A           77 KAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVD----YAKANIKTKDLRQFPNIDNAYMELGTNRAD  152 (226)
T ss_dssp             TTSEECSCCEEEEEEEEEETTCCSCSSSTTTTTCEEEEETTSHHHH----HHHHHCCCSEEEEESSHHHHHHHHHTTSCS
T ss_pred             CEEEECCCEEEEEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCC----HHHHHCCCCCEEEECCHHHHHHHHHCCCEE
T ss_conf             5488245569977799999999999997995899999987866420----123430355236507789999887458468


Q ss_pred             EEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99825047999998367800100256444237101000277757999988774433112
Q gi|254780170|r  193 AYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA  251 (342)
Q Consensus       193 A~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A  251 (342)
                      +++.|...+.......+. ..+.+.++.+..+|++++++++|++|.+.++..+..|..-
T Consensus       153 ~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~n~~l~~l~~~  210 (226)
T 1wdn_A          153 AVLHDTPNILYFIKTAGN-GQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLREN  210 (226)
T ss_dssp             EEEEEHHHHHHHHHTTTT-TTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCHHHHHHHHHCCC-CCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             999161888888764156-7405515567776189999799999999999999999979


No 10 
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens}
Probab=100.00  E-value=1.2e-32  Score=225.64  Aligned_cols=210  Identities=16%  Similarity=0.207  Sum_probs=182.0

Q ss_pred             HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             85794999871789883068898988015099999999996798220259981431002677439627998124325320
Q gi|254780170|r   31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR  110 (342)
Q Consensus        31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R  110 (342)
                      .++++|+||++.++|||+|.|++|++.||++|+++++++.++   .+++|++++|...+.++.+|++|++ .++++|++|
T Consensus         8 ~~~~~i~v~~~~~~pP~~~~~~~G~~~G~~~Dl~~~i~~~~g---~~~~~~~~~~~~~~~~l~~g~~D~~-~~~~~~~~r   83 (234)
T 3h7m_A            8 DRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMG---MTVEFRLGAWSEMFSALKSGRVDVL-QGISWSEKR   83 (234)
T ss_dssp             CSSSCEEEEEETEETTTEEECTTSCEESHHHHHHHHHHHHHT---CCEEEEEECGGGHHHHHHTTSSSEE-EEEECCHHH
T ss_pred             HCCCCEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEE-ECCCCCHHH
T ss_conf             569919999899989907999999888769999999999949---9669951799999999977997554-210244433


Q ss_pred             HHCCCCCCCCCCCCCCEEEEEECCC-CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf             1102784353223440234630211-347536417862034313426999999998629985078747989999998739
Q gi|254780170|r  111 EISLGLAFRPITYFDGQGFIMHKKK-GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH  189 (342)
Q Consensus       111 d~~~~v~Fs~~~~~dgq~~lVrk~~-~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G  189 (342)
                      +  ..+.|+.||+..++.+++++++ .+++++||+|++||+..|++...    ++.++....+++.+++..+++++|.+|
T Consensus        84 ~--~~~~fs~p~~~~~~~~~~~~~~~~~~~~~dl~~~~i~v~~g~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~g  157 (234)
T 3h7m_A           84 A--RQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHE----YLAERGYGKDLVLTPTPADALRLLAAG  157 (234)
T ss_dssp             H--TTEEEEEEEEEEEEEEEEESSSCCCSSGGGGTTSCEEEETTSHHHH----HHHTTTCGGGEEEESSHHHHHHHHHTT
T ss_pred             C--CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCCEEEEECCCHHHH----HHHHHCCCCCEEEEEHHHHHHHHHHCC
T ss_conf             1--4346577644245499998403344786784698243437987999----999732577158841157689999769


Q ss_pred             CEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             60299825047999998367800100256444237101000277757999988774433112
Q gi|254780170|r  190 RCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA  251 (342)
Q Consensus       190 r~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A  251 (342)
                      |||+++.|...+.....+.+ ..+..++...++.+|+++++++++++|.+.++..+..|..-
T Consensus       158 ~~D~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~  218 (234)
T 3h7m_A          158 GCDYAVVAMVPGMYIIRENR-LTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKT  218 (234)
T ss_dssp             SSSEEEEEHHHHHHHHHHTT-CTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECHHHHHHHHHHCC-CCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             95699941788999998668-87541025677775289999589999999999999999969


No 11 
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=100.00  E-value=3.8e-32  Score=222.52  Aligned_cols=224  Identities=13%  Similarity=0.086  Sum_probs=186.4

Q ss_pred             HHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHH
Q ss_conf             9984012442168999857949998717898830688989880150999999999967982202599814-310026774
Q gi|254780170|r   15 LFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQ   93 (342)
Q Consensus        15 ~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~   93 (342)
                      +.++.++-...-.+-|++.++|++|+..++|||+|.|++|+++||++|+++++++.++   .+++++++. |...+.+|+
T Consensus        13 ~~~~~p~~t~~e~~wl~~~~~l~v~~~~~~~P~~~~~~~g~~~G~~~dll~~i~~~lg---~~~~~~~~~~~~~~~~~l~   89 (267)
T 3mpk_A           13 LDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTG---LDFEIIGVDTVEELIAKLR   89 (267)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEEEEETEETTTEECCTTCCCBSHHHHHHHHHHHHHC---CEEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHH
T ss_conf             4535778999999999829939999848989956998999887789999999999849---9579998289999999863


Q ss_pred             CCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC-CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCC
Q ss_conf             396279981243253201102784353223440234630211-3475364178620343134269999999986299850
Q gi|254780170|r   94 SKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK-GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYH  172 (342)
Q Consensus        94 sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~-~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~  172 (342)
                      +|++|++ .++++|.+|+  ..+.|+.||+.....+++++++ .+.++++|+|++||+..|++....+    .......+
T Consensus        90 ~g~~Di~-~~~~~t~~r~--~~~~~s~p~~~~~~~~v~~~~~~~~~~~~~l~g~~i~~~~g~~~~~~l----~~~~~~~~  162 (267)
T 3mpk_A           90 SGEADMA-GALFVNSARE--SFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLL----QRRYPQAK  162 (267)
T ss_dssp             HTSCSEE-EEEECCGGGT--TTEEECSCSEEECEEEEEESSTTSCSSGGGCTTCEEEEETTCTHHHHH----HHHCTTSE
T ss_pred             CCCEEEE-ECCCCCHHHH--HCCCCCCCEECCCEEEEEECCCCCCCCHHHHCCCCEEEECCCHHHHHH----HHHCCCCE
T ss_conf             6966599-6478998898--407767621304404542014434579889658730554154056999----97288741


Q ss_pred             EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             7874798999999873960299825047999998367800100256444237101000277757999988774433
Q gi|254780170|r  173 PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAM  248 (342)
Q Consensus       173 ~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~al  248 (342)
                      ++.|++..+++++|.+|||||++.|...+.....+...++..++.+..++..+++++++++|++|.++++.++..|
T Consensus       163 i~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~k~~~~L~~~in~~L~~l  238 (267)
T 3mpk_A          163 VVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSI  238 (267)
T ss_dssp             EEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTS
T ss_pred             EEEECCHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf             7998068987789887986768427999999998389997699504677752699999489999999999999970


No 12 
>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A*
Probab=100.00  E-value=4.7e-32  Score=221.95  Aligned_cols=211  Identities=18%  Similarity=0.149  Sum_probs=176.0

Q ss_pred             HHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCC
Q ss_conf             99985794999871789883068898988015099999999996798220259981431002677439627998124325
Q gi|254780170|r   28 GDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWT  107 (342)
Q Consensus        28 d~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T  107 (342)
                      .+|+++++|+||++.++|||+|.|++|+++||++|+++++|+.++   .+++|+.++|..++.+|++|++|++++++++|
T Consensus         4 ~~~~~~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~d~i~~~~~~~   80 (246)
T 3g41_A            4 SKIDRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEKLG---KQLEVREFAFDALILNLKKHRIDAILAGMSIT   80 (246)
T ss_dssp             ---CCCCEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHHT---CEEEEEECCGGGHHHHHHTTSSSEECSCCBCC
T ss_pred             CHHCCCCCEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             202058959999899889934899999888729999999999969---96699988989999999759988796623158


Q ss_pred             CCCHHCCCCCCCCCCCCCCEEEEEECCC--CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf             3201102784353223440234630211--34753641786203431342699999999862998507874798999999
Q gi|254780170|r  108 LLREISLGLAFRPITYFDGQGFIMHKKK--GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAA  185 (342)
Q Consensus       108 ~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~--~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~a  185 (342)
                      ++|+  ..++|++||+...+.++++++.  .+++.++|+|++|||+.||+.+..+    .. ...++++.|++..+++.+
T Consensus        81 ~~r~--~~~~fs~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~Igv~~gs~~~~~l----~~-~~~~~~~~~~~~~~~~~~  153 (246)
T 3g41_A           81 PSRQ--KEIALLPYYGDEVQELMVVSKRSLETPVLPLTQYSSVAVQTGTYQEHYL----LS-QPGICVRSFDSTLEVIME  153 (246)
T ss_dssp             HHHH--TTSEEEEEECCCBCEEEEEEETTCCSCSCCGGGSSCEEEETTSHHHHHH----HT-STTCCEEEESCHHHHHHH
T ss_pred             HHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHH----HH-CCCCEEEEECHHHHHHHH
T ss_conf             6660--3434342333334332112222344441001234058885153799999----83-887538983407878889


Q ss_pred             HHCCCEEEEEECCHHHHHHHHHCCCCHH-HCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             8739602998250479999983678001-00256444237101000277757999988774433
Q gi|254780170|r  186 YRAHRCDAYTGDISALYALKLTNDRPSE-HVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAM  248 (342)
Q Consensus       186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~-~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~al  248 (342)
                      |.+||+|+++.|...+.......++... ...++.....++++++++++|++|.+.++..+..|
T Consensus       154 L~~GriD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~k~~~~L~~~in~~l~~~  217 (246)
T 3g41_A          154 VRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDL  217 (246)
T ss_dssp             HHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             8759843113069999999985456530232258754430389999698999999999999999


No 13 
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp}
Probab=100.00  E-value=9.6e-32  Score=220.00  Aligned_cols=208  Identities=16%  Similarity=0.150  Sum_probs=174.5

Q ss_pred             CCEEEEEEECCCCCCEEEC-CCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             7949998717898830688-989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVK-ANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d-~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
                      ++.|+||++.++|||+|.+ ++|++.||++|+.+++|+.++   .+++|++.+|..++..|++|++|++++++++|.+|+
T Consensus         2 s~~l~vg~~~~~pP~~~~~~~~g~~~G~~~dl~~~ia~~~g---~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~   78 (237)
T 3kzg_A            2 SLNLTIGTSKFNPPFEVWSGNNSSLYGFDIDLMQEICRRLH---ATCTFEAYIFDDLFPALKNREVDLVIASMIITDERK   78 (237)
T ss_dssp             CCEEEEEEESEETTTEECCCTTSCCBSHHHHHHHHHHHHTT---CEEEEEEECGGGHHHHHHTTSSSEECSSCBCCTTGG
T ss_pred             CCCEEEEECCCCCCCEEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHH
T ss_conf             87589998999898368989999288739999999999969---975999779999999998699877721367997897


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCE
Q ss_conf             10278435322344023463021134753641786203431342699999999862998507874798999999873960
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRC  191 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~  191 (342)
                        ..++|+.|||..+..++++++..++++++|+|++||++.|++.+..+    .......++..+++.++++++|.+|||
T Consensus        79 --~~~~fs~py~~~~~~~~~~~~~~~~~~~~l~g~~i~~~~g~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~Grv  152 (237)
T 3kzg_A           79 --KHFIFSLPYMESNSQYITTVDSKISTFDDLHGKKIGVRKGTPYARQV----LSENRNNQVIFYELIQDMLLGLSNNQV  152 (237)
T ss_dssp             --GTCEECCCSBCCEEEEEEETTCSCCSGGGGTTCEEEEETTSTHHHHH----HHTCSSCEEEEESSHHHHHHHHHTTSS
T ss_pred             --HCCCCCCCEEECCCEEEECCCCCCCCHHHHCCCCCEEECCCHHHHHH----HHHCCCCEEECCCCHHHHHHHHHCCCE
T ss_conf             --30204674340340123315555689889769821432586899999----873456401125888998889865965


Q ss_pred             EEEEECCHHHHHHHHHCCCC-----HHHCCCCCCCC-CCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             29982504799999836780-----01002564442-371010002777579999887744331
Q gi|254780170|r  192 DAYTGDISALYALKLTNDRP-----SEHVILPDIIS-KSPLAPAIIQGDTEWYNIVSWTHYAMV  249 (342)
Q Consensus       192 DA~~~D~s~La~~~~~~~~p-----~~~~il~e~is-kEPlg~avr~gD~~w~d~V~W~~~ali  249 (342)
                      |+++.|...+.....+.+..     ..+.+++..++ .+|+++++++++++|.+.++..+..|.
T Consensus       153 D~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~in~~l~~l~  216 (237)
T 3kzg_A          153 DASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEME  216 (237)
T ss_dssp             SEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHHH
T ss_pred             EEEEECHHHHHHHHHHCCCCCEECCCCEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             7999659999999985896410215320113665556763699988999999999999999999


No 14 
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginosa PA01,structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=100.00  E-value=1.2e-31  Score=219.47  Aligned_cols=217  Identities=18%  Similarity=0.177  Sum_probs=178.0

Q ss_pred             CCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEE
Q ss_conf             24421689998579499987178988306889898801509999999999679822025998143100267743962799
Q gi|254780170|r   21 STNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDIL  100 (342)
Q Consensus        21 aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil  100 (342)
                      .+.+++|++|+++|+||||+..++|||+|.|++|+++||++|+++++++.++   .+++|++++|..++.++.+|++|++
T Consensus         2 ~~~~~~l~~I~~~g~l~V~~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~~g---~~~~~~~~~~~~~~~~~~~g~~d~~   78 (239)
T 3kbr_A            2 NAQESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLG---AKLVVVPTSWPNLMRDFADDRFDIA   78 (239)
T ss_dssp             ---CCHHHHHHHHTEEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHTT---CEEEEEECCTTTHHHHHHTTCCSEE
T ss_pred             CCCHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHCCCCCCC
T ss_conf             8325159998639989999878989914899999887707999999988649---7137885366888999985996522


Q ss_pred             EECCCCCCCCHHCCCCCCCCCCCCCCEEEEEEC--CCCCCCHHHHC--CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             812432532011027843532234402346302--11347536417--86203431342699999999862998507874
Q gi|254780170|r  101 SRNTDWTLLREISLGLAFRPITYFDGQGFIMHK--KKGISSVSQLS--GASICVQAGTTTELTLADYFKAHNMKYHPIVF  176 (342)
Q Consensus       101 ~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk--~~~i~s~~dL~--G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~  176 (342)
                      ++...+|++|.  ..+.|+.|++++.+.+++..  +..+.+.++++  |++||+..|++.+..+    ..+....+++.|
T Consensus        79 ~~~~~~t~~~~--~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~----~~~~~~~~i~~~  152 (239)
T 3kbr_A           79 MSGISINLERQ--RQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFA----RANLKKARILVH  152 (239)
T ss_dssp             CSSCBCCHHHH--TTCEECSCSEEECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHHHHHH----HHHCSSSEEEEC
T ss_pred             CCCCCCCHHHH--HHCCCCCCEEECCCEEEEEECCCCCCCCHHHHHCCCCEEEECCCCHHHHHH----HHCCCCCEEEEE
T ss_conf             33366897774--322567434642521355202567656524443368705765675399999----870876345330


Q ss_pred             CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             798999999873960299825047999998367800100256-4442371010002777579999887744331
Q gi|254780170|r  177 ERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIISKSPLAPAIIQGDTEWYNIVSWTHYAMV  249 (342)
Q Consensus       177 ~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~iskEPlg~avr~gD~~w~d~V~W~~~ali  249 (342)
                      ++..+++++|.+||||+++.|...+......  +|+...+.+ ..++.++++.++++ |++|.+.++..+..|.
T Consensus       153 ~~~~~~l~~L~~grvD~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~in~~l~~l~  223 (239)
T 3kbr_A          153 PDNVTIFQQIVDGKADLMMTDAIEARLQSRL--HPELCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAE  223 (239)
T ss_dssp             CCTTTHHHHHHTTSCSEEEEEHHHHHHHHHH--CTTEEECCCC-CCCCEEECCEECS-CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEEEEECHHHHHHHHHH--CCCCEEEEECCCCCCCEEEEEECC-CHHHHHHHHHHHHHHH
T ss_conf             2327676786369831999548999999997--899638962157775308999769-9999999999999999


No 15 
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: LYS; 2.62A {Wolinella succinogenes}
Probab=100.00  E-value=3.2e-31  Score=216.71  Aligned_cols=210  Identities=21%  Similarity=0.281  Sum_probs=177.9

Q ss_pred             HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             85794999871789883068898988015099999999996798220259981431002677439627998124325320
Q gi|254780170|r   31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR  110 (342)
Q Consensus        31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R  110 (342)
                      +.||+||||+..++|||+|.|++|+++||++|+++++++.++   .+++|++++|..++..+.+|++|++++++++|++|
T Consensus         2 ~~rg~lrvgv~~~~pP~~~~d~~g~~~G~~~Dl~~~i~~~lg---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r   78 (245)
T 3k4u_A            2 SLRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMG---VKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQER   78 (245)
T ss_dssp             -CCSEEEEEECTTSTTTCEEETTTEEESHHHHHHHHHHHHHT---CEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHH
T ss_pred             CCCCEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHH
T ss_conf             988789999828988936899999888729999999999949---96699733708889998669977898678568777


Q ss_pred             HHCCCCCCCCCCCCCCEEEEEECCC--CCCCHHHHCCCC--EEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf             1102784353223440234630211--347536417862--034313426999999998629985078747989999998
Q gi|254780170|r  111 EISLGLAFRPITYFDGQGFIMHKKK--GISSVSQLSGAS--ICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAY  186 (342)
Q Consensus       111 d~~~~v~Fs~~~~~dgq~~lVrk~~--~i~s~~dL~G~~--I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al  186 (342)
                      +  ..++|+.|+++++..+++++++  .+.+..++.+++  +++..|++.+.    +.+......+++.+++..+++.+|
T Consensus        79 ~--~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~l~~L  152 (245)
T 3k4u_A           79 N--LRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEY----AAKRLFKNAKLKTYDTEAEAVQEV  152 (245)
T ss_dssp             H--TTSEECSCSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHH----HHHHHCSSSEEEEESSHHHHHHHH
T ss_pred             H--HHCCCCCCEECCCCCCHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHH----HHHHHCCCCEEEEEECCHHHHHHH
T ss_conf             7--5334678612044110001465444678778514554213477723789----999737786289984217899999


Q ss_pred             HCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             7396029982504799999836780010025644423710100027775799998877443311
Q gi|254780170|r  187 RAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT  250 (342)
Q Consensus       187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~  250 (342)
                      .+||||+++.|...+.......+ +....+++..++.+|+++++|++|++|.+.++..+..|.+
T Consensus       153 ~~GrvD~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~  215 (245)
T 3k4u_A          153 LNGKADMFIFDLPFNVAFMAQKG-QGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKH  215 (245)
T ss_dssp             HSSSSEEEEEEHHHHHHHHHHTT-TTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCEEEECCHHHHHHHHHCC-CCCCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             77996599973277779998648-7664212214777618999969999999999999999996


No 16 
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis}
Probab=100.00  E-value=1.7e-31  Score=218.40  Aligned_cols=208  Identities=16%  Similarity=0.105  Sum_probs=173.0

Q ss_pred             CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC
Q ss_conf             94999871789883068898988015099999999996798220259981431002677439627998124325320110
Q gi|254780170|r   34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS  113 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~  113 (342)
                      ..|+||+++++|||+|.|++|+++||++|+++++|..++   .+++|++++|+.++.+|++|++|+++++++++.+|+. 
T Consensus        11 ~~l~Vg~~~~~pP~~~~~~~G~~~G~~vDi~~~ia~~lg---~~v~~~~~~~~~~~~~l~~g~~d~~~~~~~~~~~r~~-   86 (242)
T 3del_B           11 EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLG---KTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLK-   86 (242)
T ss_dssp             CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHHT---CEEEEEECCGGGHHHHHHTTSSSEECSSBBCCHHHHT-
T ss_pred             CEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-
T ss_conf             969999899889915899999888729999999999969---9769997898999999975986610035769988983-


Q ss_pred             CCCCCCCCCCCCCEEE-EEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEE
Q ss_conf             2784353223440234-630211347536417862034313426999999998629985078747989999998739602
Q gi|254780170|r  114 LGLAFRPITYFDGQGF-IMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCD  192 (342)
Q Consensus       114 ~~v~Fs~~~~~dgq~~-lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~D  192 (342)
                       .+.|+++|+...+.+ +++++..++++++|+|++|||+.||..+..+++     ....+++.|++..+++.+|.+||||
T Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Vgv~~gs~~~~~l~~-----~~~~~i~~~~~~~~~~~~L~~griD  160 (242)
T 3del_B           87 -EILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQS-----LSEVHIRSFDSTLEVLMEVMHGKSP  160 (242)
T ss_dssp             -TEEEEEEEEEEESEEEEEEESCCSCCCCGGGSSCEEEETTSHHHHHHHH-----STTCCEEEESSHHHHHHHHHTTSSS
T ss_pred             -HCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCEEEECCCHHHHHHHH-----CCCCEEEEEECCCHHHHHHHCCCEE
T ss_conf             -1367864323553268863154332134420220024257435899985-----6587079861453125688639743


Q ss_pred             EEEECCHHHHHHHHHCCCCHH-HCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998250479999983678001-00256444237101000277757999988774433112
Q gi|254780170|r  193 AYTGDISALYALKLTNDRPSE-HVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA  251 (342)
Q Consensus       193 A~~~D~s~La~~~~~~~~p~~-~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A  251 (342)
                      +++.|...+.......+.-.. ...+++.....+++++++++|+++.+.++..+..|.+-
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~k~~~~l~~~ln~al~~l~~~  220 (242)
T 3del_B          161 VAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKE  220 (242)
T ss_dssp             EEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHT
T ss_pred             EEEECHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             999669999999985887634542268765432689999489999999999999999978


No 17 
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=100.00  E-value=1.6e-33  Score=231.30  Aligned_cols=218  Identities=13%  Similarity=0.104  Sum_probs=176.9

Q ss_pred             CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-----------------CC
Q ss_conf             4216899985794999871789883068898988015099999999996798220259981-----------------43
Q gi|254780170|r   23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-----------------NA   85 (342)
Q Consensus        23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-----------------~~   85 (342)
                      ...+++.++.++++++|+...+|||++.+++|+|+||||||+++||+.++   .+++|+++                 +|
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~G~~vDl~~~ia~~lg---~~~e~~~~~~~~~g~~~~~~~~~~~~w  106 (292)
T 1pb7_A           30 EEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMN---FTYEVHLVADGKFGTQERVNNSNKKEW  106 (292)
T ss_dssp             CCBCTTSCBCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHHT---CCEEEEECTTCCCCCEEECTTSSCEEE
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf             44434433457428951168888633127999769984999999999839---947999866765454333465566888


Q ss_pred             CCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC--CC----CEEEEECCCHHHH
Q ss_conf             10026774396279981243253201102784353223440234630211347536417--86----2034313426999
Q gi|254780170|r   86 KERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS--GA----SICVQAGTTTELT  159 (342)
Q Consensus        86 ~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~--G~----~I~v~~GTT~e~~  159 (342)
                      ++++++|++|++|++++++++|++|+  ..++|+.||+++++.++||+++.+....+++  ++    .+++..+++.+..
T Consensus       107 ~~~~~~l~~g~~Di~~~~~~~t~eR~--~~~~Fs~Py~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  184 (292)
T 1pb7_A          107 NGMMGELLSGQADMIVAPLTINNERA--QYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIY  184 (292)
T ss_dssp             CHHHHHHHHTSCSEECSSCBCCHHHH--TTEEECSCSEEEEEEEEEETTCCCCSTTCHHHHSCBTTBCEECBTTSHHHHH
T ss_pred             HHHHHHHHCCCEEEEEECCCCCHHHH--HHCCCCCEECCCCEEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf             89999986797679986687998999--4266651012477689998688656453033068633269978664799999


Q ss_pred             HHHHHH--HCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf             999998--629985078747989999998739602998250479999983678001002564442371010002777579
Q gi|254780170|r  160 LADYFK--AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEW  237 (342)
Q Consensus       160 l~~~~~--~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w  237 (342)
                      ++....  ......+++.|++..+++.++.+|++||+..|...+......  + .+++++++.++.+|+++++++|+ .|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~da~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~a~~k~~-~l  260 (292)
T 1pb7_A          185 FRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ--K-CDLVTTGELFFRSGFGIGMRKDS-PW  260 (292)
T ss_dssp             HHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHH--C-TTEEECSSCSEEEEECCEEETTC-SS
T ss_pred             HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHH--C-CCEEEECCCCCCCEEEEEEECCH-HH
T ss_conf             98646665306774699828899999998779735996258999999986--8-98799377666612899990875-99


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999887744331
Q gi|254780170|r  238 YNIVSWTHYAMV  249 (342)
Q Consensus       238 ~d~V~W~~~ali  249 (342)
                      .+.++..+..|.
T Consensus       261 ~~~in~al~~l~  272 (292)
T 1pb7_A          261 KQNVSLSILKSH  272 (292)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 18 
>1ii5_A Hypothetical protein SLR1257; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.97  E-value=5.2e-30  Score=209.01  Aligned_cols=205  Identities=16%  Similarity=0.138  Sum_probs=171.1

Q ss_pred             CCEEEEEEECCCCCCEEECC--CCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCC
Q ss_conf             79499987178988306889--898801509999999999679822025998-143100267743962799812432532
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKA--NGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLL  109 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~--~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~  109 (342)
                      .+.||||+.. .|||+|.++  +|+++||+||+++++|+.++   .+++|+. .+|+..+.+|++|++|++++++++|++
T Consensus         3 a~~LrVg~~~-~pPf~~~~~~~~g~~~G~~vdl~~~ia~~~g---~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~e   78 (233)
T 1ii5_A            3 AMALKVGVVG-NPPFVFYGEGKNAAFTGISLDVWRAVAESQK---WNSEYVRQNSISAGITAVAEGELDILIGPISVTPE   78 (233)
T ss_dssp             SCCEEEEECC-CTTTCEEC-----CEESHHHHHHHHHHHHHT---CCEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHH
T ss_pred             CCCEEEEEEC-CCCCEEEECCCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf             7877999947-9997665349999288789999999999839---97499956999999999986998767411568867


Q ss_pred             CHHCCCCCCCCCCCCCCEEEEEECCCC--CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
Q ss_conf             011027843532234402346302113--475364178620343134269999999986299850787479899999987
Q gi|254780170|r  110 REISLGLAFRPITYFDGQGFIMHKKKG--ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYR  187 (342)
Q Consensus       110 Rd~~~~v~Fs~~~~~dgq~~lVrk~~~--i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~  187 (342)
                      |+....+.|+.|||+.++.++++++..  +.+++||+|++||+..|++.+..+    +.  ...+++.|++.++++.+|.
T Consensus        79 R~~~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dl~g~~i~~~~g~~~~~~~----~~--~~~~i~~~~~~~~~~~~l~  152 (233)
T 1ii5_A           79 RAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWA----NF--YQADVRETNNLTAAITLLQ  152 (233)
T ss_dssp             HHTSTTEEECCCCEEEEEEEEEEGGGTTTCSSGGGGTTCEEEEETTSHHHHHH----HH--TTCEEEEESSHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHH----HC--CCCCCCCCCCHHHHHHHHH
T ss_conf             76443023467742257336885112224566888754230556886899998----55--3664213574799999986


Q ss_pred             CCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             39602998250479999983678001002564442371010002777579999887744331
Q gi|254780170|r  188 AHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV  249 (342)
Q Consensus       188 ~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali  249 (342)
                      +||||+++.|...+.......+. ..+.+.+..++.+|++++++++ ++|.+.++-.+..|.
T Consensus       153 ~grvD~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~~in~~l~~~~  212 (233)
T 1ii5_A          153 KKQVEAVMFDRPALIYYTRQNPN-LNLEVTEIRVSLEPYGFVLKEN-SPLQKTINVEMLNLL  212 (233)
T ss_dssp             TTSCSEEEEEHHHHHHHHHHCGG-GCEEECSCCSEEEEEEEEEETT-CTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHCCC-CCEEECCCCCCCCEEEEEECCC-HHHHHHHHHHHHHHH
T ss_conf             59179997869999999996899-9764245678773499997899-799999999999999


No 19 
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.97  E-value=1.1e-29  Score=206.90  Aligned_cols=210  Identities=19%  Similarity=0.215  Sum_probs=175.0

Q ss_pred             CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC
Q ss_conf             94999871789883068898988015099999999996798220259981431002677439627998124325320110
Q gi|254780170|r   34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS  113 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~  113 (342)
                      .+||||+..++|||+|.|++|+++||++|+++++|+.++   .+++|++.+|..++.++.+|++|+++++.++|.+|.. 
T Consensus         4 ~tirv~~~~~~pP~~~~d~~g~~~G~~~Dl~~~ia~~lg---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~eR~~-   79 (239)
T 1lst_A            4 QTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQ---VKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQ-   79 (239)
T ss_dssp             SEEEEEECSCBTTTBEECTTCCEESHHHHHHHHHHHHHT---CEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHHH-
T ss_pred             CEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHH-
T ss_conf             869999899978925899999888709999999999959---9689998030767899866876789967879978985-


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCC-CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEE
Q ss_conf             27843532234402346302113-47536417862034313426999999998629985078747989999998739602
Q gi|254780170|r  114 LGLAFRPITYFDGQGFIMHKKKG-ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCD  192 (342)
Q Consensus       114 ~~v~Fs~~~~~dgq~~lVrk~~~-i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~D  192 (342)
                       .+.|+.||++....+++++++. +++++||+|++||+..|++.+..+...+...  .++++.+++..+++.++.+|++|
T Consensus        80 -~~~~s~p~~~~~~~~~~~~~~~~~~~~~dL~~~~i~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~vD  156 (239)
T 1lst_A           80 -EIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTK--GVDVVAYANQDLIYSDLTAGRLD  156 (239)
T ss_dssp             -HCEECSCSBCCCEEEEEETTCCCCSSHHHHTTCEEEEETTSHHHHHHHHHTGGG--TCEEEEESSHHHHHHHHHTTSCS
T ss_pred             -HCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHCCC--EEEEEEECCHHHHHHHHHCCCEE
T ss_conf             -201357457414311001588767997896899899985752776666541331--02356308989999999849713


Q ss_pred             EEEECCHHHHHHHHHCCCCHHHCCC-----CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9982504799999836780010025-----644423710100027775799998877443311
Q gi|254780170|r  193 AYTGDISALYALKLTNDRPSEHVIL-----PDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT  250 (342)
Q Consensus       193 A~~~D~s~La~~~~~~~~p~~~~il-----~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~  250 (342)
                      +++.+...+.......+........     ++.+...+++++++++|++|...++..+..|..
T Consensus       157 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~~~~  219 (239)
T 1lst_A          157 AALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQ  219 (239)
T ss_dssp             EEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             999438999999996756665234166444542356407999908999999999999999997


No 20 
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Probab=99.96  E-value=2.2e-28  Score=198.75  Aligned_cols=198  Identities=16%  Similarity=0.130  Sum_probs=162.8

Q ss_pred             CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC
Q ss_conf             94999871789883068898988015099999999996798220259981431002677439627998124325320110
Q gi|254780170|r   34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS  113 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~  113 (342)
                      .+||||+..++|||+|.|++|++.||++|+++++|+.++   .+++|++.+|..++..|.+|++|++++++++|.+|+  
T Consensus         5 ~tlrVg~~~~~pP~~~~d~~g~~~G~~vDl~~~ia~~lg---~~~~~~~~~~~~~~~~l~~g~~D~i~~~~~~t~er~--   79 (232)
T 3i6v_A            5 DTVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAG---LTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERD--   79 (232)
T ss_dssp             -CEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHHHT---CCEEEEECCGGGHHHHHHTTSCSEECSSCBCCHHHH--
T ss_pred             CEEEEEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHH--
T ss_conf             959999879979936999999787759999999999849---967999767488999986799779997786897898--


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE
Q ss_conf             27843532234402346302113475364178620343134269999999986299850787479899999987396029
Q gi|254780170|r  114 LGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA  193 (342)
Q Consensus       114 ~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA  193 (342)
                      ..+.|+.||+..++.+++++++.    .||+|. +++..++.....+    ..  ...+++.|++..+++.+|.+||||+
T Consensus        80 ~~~~~s~p~~~~~~~~~~~~~~~----~dl~~~-~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~L~~grvD~  148 (232)
T 3i6v_A           80 EVIDFTQNYIPPTASSYVATSDG----ADLSGI-VAAQTATIQAGYI----AE--SGATLVEFATPEETIAAVRNGEADA  148 (232)
T ss_dssp             TTSEEEEEEECCCEEEEEESSTT----CCTTSE-EEEETTSHHHHHH----HH--SSSEEEEESSHHHHHHHHHTTSSSE
T ss_pred             HCCCEECCEECCCCEEEEECCCH----HHHCCC-CCEEECCHHHHHH----HC--CCCEEEEECCHHHHHHHHHCCCCEE
T ss_conf             31414032102661589983886----880786-0204253177776----35--6845899699899999997699509


Q ss_pred             EEECCHHHHHHHHHCCCCHHHC-CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             9825047999998367800100-2564442371010002777579999887744331
Q gi|254780170|r  194 YTGDISALYALKLTNDRPSEHV-ILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV  249 (342)
Q Consensus       194 ~~~D~s~La~~~~~~~~p~~~~-il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali  249 (342)
                      ++.|...+.......+  .... +.+.....+|++++++++|+++.+.++..+..|.
T Consensus       149 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~L~~~in~~l~~l~  203 (232)
T 3i6v_A          149 VFADRDYLVPIVAESG--GELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMK  203 (232)
T ss_dssp             EEEEHHHHHHHHHHTT--TSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHCC--CCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             9972899999998669--971993267776641799980899999999999999999


No 21 
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102}
Probab=99.96  E-value=4.8e-28  Score=196.58  Aligned_cols=202  Identities=16%  Similarity=0.252  Sum_probs=167.8

Q ss_pred             CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             94999871789883068898988015099999999996798220259981-43100267743962799812432532011
Q gi|254780170|r   34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      -.|++|+. .+|||+| +++|+++||++|+++++|+.++   .+++|++. +|..++.+|++|++|++++++++|++|+.
T Consensus         3 ~~l~v~~~-~~PPf~~-~~~g~~~G~~~di~~~i~~~lg---~~~~~v~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~   77 (228)
T 2pyy_A            3 QPLLVATR-VIPPFVL-SNKGELSGFSIDLWRSIATQIG---IESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQ   77 (228)
T ss_dssp             -CEEEEEC-CBTTTBB-CC---CBSHHHHHHHHHHHHHT---CCEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHHHH
T ss_pred             CCEEEEEC-CCCCEEE-CCCCEEEEEHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf             64899967-7198187-4499688859999999999969---97399967999999999985997667102557988985


Q ss_pred             CCCCCCCCCCCCCCEEEEEECC----CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf             0278435322344023463021----134753641786203431342699999999862998507874798999999873
Q gi|254780170|r  113 SLGLAFRPITYFDGQGFIMHKK----KGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRA  188 (342)
Q Consensus       113 ~~~v~Fs~~~~~dgq~~lVrk~----~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~  188 (342)
                      .  ++|+.|+|.++..++++++    ..+.++++|+|++|++..|++.+..++    ..  ..+++.+++..+++.+|.+
T Consensus        78 ~--~~~s~p~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~l~----~~--~~~~~~~~~~~~~~~~l~~  149 (228)
T 2pyy_A           78 N--FDFSLPIFASGLQIMVRNLESGTGDIRSIDDLPGKVVATTAGSTAATYLR----EH--HISVLEVPKIEEAYKALQT  149 (228)
T ss_dssp             H--SEECSCSEEEEEEEEEEC-----CCCCSGGGCTTCEEEEETTSHHHHHHH----HT--TCEEEEESSHHHHHHHHHT
T ss_pred             H--CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCEEEECCCCHHHHHHH----HH--HCCCHHHHHHHHHHHHHHC
T ss_conf             3--44678721256136763144565345887882998898438968999998----75--2021113248888878645


Q ss_pred             CCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             96029982504799999836780010025644423710100027775799998877443311
Q gi|254780170|r  189 HRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT  250 (342)
Q Consensus       189 Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~  250 (342)
                      ||||+++.|...+......... ....++...+..+|++++.++ |+++.+.++..+..|..
T Consensus       150 gr~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ln~~l~~l~~  209 (228)
T 2pyy_A          150 KKADAVVFDAPVLLFYAANEGK-GKVEIVGSILREESYGIILPN-NSPYRKPINQALLNLKE  209 (228)
T ss_dssp             TSSSEEEEEHHHHHHHHHTTTT-TTEEEEEEEEEEEEECCEECT-TCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEECHHHHHHHHHHCCC-CCEEECCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
T ss_conf             9467999631888999984688-835883466766328999779-98999999999999997


No 22 
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B*
Probab=99.95  E-value=2.3e-28  Score=198.61  Aligned_cols=201  Identities=12%  Similarity=0.107  Sum_probs=156.5

Q ss_pred             CEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-----------CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCC
Q ss_conf             3068898988015099999999996798220259981-----------43100267743962799812432532011027
Q gi|254780170|r   47 FAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-----------NAKERFLALQSKQIDILSRNTDWTLLREISLG  115 (342)
Q Consensus        47 fs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-----------~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~  115 (342)
                      ....+.++.++||+|||+++||+.++-   ++||+.+           +|++.+.+|.+|++|++++++|+|++|+  ..
T Consensus        48 ~~~~~~~~~~~G~~iDl~~~ia~~lg~---~~e~~~v~d~~~g~~~~~~w~~li~~l~~g~~Di~i~~~tit~eR~--~~  122 (284)
T 2a5s_A           48 NEGMNVKKCCKGFCIDILKKLSRTVKF---TYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERS--EV  122 (284)
T ss_dssp             SCEEEEEEEEESHHHHHHHHHHHHHTC---CEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHH--TT
T ss_pred             CCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHH--HH
T ss_conf             677678876389729999999998499---7799993587657657888899997663885899995880799999--54


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCCCHHHHC---------CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf             84353223440234630211347536417---------862034313426999999998629985078747989999998
Q gi|254780170|r  116 LAFRPITYFDGQGFIMHKKKGISSVSQLS---------GASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAY  186 (342)
Q Consensus       116 v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~---------G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al  186 (342)
                      ++|+.|||..++.++|++++.+....+++         +.++++..|++++.++.+.+...........+++.++++++|
T Consensus       123 vdFs~Py~~~~~~ilv~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  202 (284)
T 2a5s_A          123 VDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSL  202 (284)
T ss_dssp             EEECCCCEEECEEEEEETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHH
T ss_conf             82777624676778986798666635653267033156618999837549999997655431267982489999999999


Q ss_pred             HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7396029982504799999836780010025--6444237101000277757999988774433112123
Q gi|254780170|r  187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEEL  254 (342)
Q Consensus       187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~  254 (342)
                      .+|++||++.|.+.+.....+.+. .+..++  +..++.+++|+++++|++ |.+.++..+..|.+-.++
T Consensus       203 ~~G~vDa~i~d~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~gia~~k~s~-l~~~in~ai~~l~~~G~~  270 (284)
T 2a5s_A          203 KTGKLDAFIYDAAVLNYKAGRDEG-CKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEM  270 (284)
T ss_dssp             HTTSCSEEEEEHHHHHHHHHTCTT-SCEEEEECCCGGGCEEECCEEETTCT-THHHHHHHHHHHHHHTHH
T ss_pred             HCCCCCEEECCHHHHHHHHHHCCC-CCEEEECCCCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCHH
T ss_conf             869987896459999999985899-85899358876576069999818839-999999999999969899


No 23 
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94  E-value=8.5e-27  Score=188.66  Aligned_cols=214  Identities=13%  Similarity=0.063  Sum_probs=160.0

Q ss_pred             HHHCCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEE-------------CCCCCCH
Q ss_conf             985794999871789883068898-------98801509999999999679822025998-------------1431002
Q gi|254780170|r   30 IKKRGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLP-------------LNAKERF   89 (342)
Q Consensus        30 Vk~rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~-------------~~~~~rf   89 (342)
                      ..++++|+||+ ...|||.+.+++       ++++||||||+++||+.++-   +++|+.             .+|..++
T Consensus         9 ~~~~~t~~v~t-~~~pP~~~~~~~~~~~~~n~~~~Gf~vDl~~~ia~~lg~---~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (312)
T 1yae_A            9 SLSNRSLIVTT-ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGF---TYEIRLVEDGKYGAQDDVNGQWNGMV   84 (312)
T ss_dssp             TTCSCEEEEEE-CCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCC---EEEEEECSSCCCCCBCTTTCCBCSHH
T ss_pred             CCCCCEEEEEE-CCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf             23688899998-245996788169987678986688789999999998299---77999905775453233678889987


Q ss_pred             HHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-------------------------CCCHHHHC
Q ss_conf             67743962799812432532011027843532234402346302113-------------------------47536417
Q gi|254780170|r   90 LALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-------------------------ISSVSQLS  144 (342)
Q Consensus        90 ~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-------------------------i~s~~dL~  144 (342)
                      ++|++|++|++++++|+|++|..  .++|+.|||..+++++||++++                         |++++||.
T Consensus        85 ~~l~~g~~Di~i~~~sit~eR~~--~v~FS~PY~~~~~~lvv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~s~~dl~  162 (312)
T 1yae_A           85 RELIDHKADLAVAPLAITYVREK--VIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESPIDSADDLA  162 (312)
T ss_dssp             HHHHTTSCSEECSSCBCCHHHHH--HEEEEEEEEEECEEEEEEC----------------------------CCSHHHHH
T ss_pred             HHHCCCEEEEEEECCEECHHHHH--CCCCCCCEEEECEEEEEECCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCHHHHC
T ss_conf             43224406599864585177741--0564777463047999998987775406662773566687320356658979958


Q ss_pred             CCC---EEEEECCCHHHHHHHHH----H---HCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH
Q ss_conf             862---03431342699999999----8---6299850787479899999987396029982504799999836780010
Q gi|254780170|r  145 GAS---ICVQAGTTTELTLADYF----K---AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH  214 (342)
Q Consensus       145 G~~---I~v~~GTT~e~~l~~~~----~---~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~  214 (342)
                      ++.   +++..|+++...+.+..    .   ..........+....+...++..++.||++.|.+.+.....   ++...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~d~~~~~~~~~---~~~~~  239 (312)
T 1yae_A          163 KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQ---RNCNL  239 (312)
T ss_dssp             TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSSEEEEEEHHHHHHHHT---TCTTE
T ss_pred             CCEEEEEEEEECEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHHH---CCCCE
T ss_conf             983699978812009998765101468899987630443121145688999971898599913899999984---49966


Q ss_pred             CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             025644423710100027775799998877443311212
Q gi|254780170|r  215 VILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEE  253 (342)
Q Consensus       215 ~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee  253 (342)
                      .++++.+..+++|+++|||+ .|++.++-.+..|.+-.+
T Consensus       240 ~~~~~~~~~~~~~~a~~K~s-~L~~~in~aL~~l~~~G~  277 (312)
T 1yae_A          240 TQIGGLIDSKGYGVGTPMGS-PYRDKITIAILQLQEEGK  277 (312)
T ss_dssp             EEESSCSSCEEEEEEEETTC-SSHHHHHHHHHHHHHHTH
T ss_pred             EEECCCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHCCH
T ss_conf             98044467732899992880-999999999999997898


No 24 
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.93  E-value=8.5e-26  Score=182.35  Aligned_cols=208  Identities=15%  Similarity=0.102  Sum_probs=152.2

Q ss_pred             CCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-------------CCCCHHHH
Q ss_conf             794999871789883068898-------9880150999999999967982202599814-------------31002677
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-------------AKERFLAL   92 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-------------~~~rf~aL   92 (342)
                      .++|+|++-. .|||.|.+.+       |+++|||||++++||+.++-   +++|+++.             |+.++++|
T Consensus         3 ~~t~~v~t~~-~pPf~~~~~~~~~~~~n~~~~G~~vDl~~~ia~~lg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   78 (263)
T 1mqi_A            3 NKTVVVTTIL-ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGF---KYKLTIVGDGKYGARDADTKIWNGMVGEL   78 (263)
T ss_dssp             CCCEEEEECC-BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred             CEEEEEEECC-CCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEECCCCCCCEECCCCCCHHHHHHHH
T ss_conf             7399999786-5996667368665478897688689999999998599---77999877876321313567778999865


Q ss_pred             HCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC--
Q ss_conf             439627998124325320110278435322344023463021134753641786203431342699999999862998--
Q gi|254780170|r   93 QSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMK--  170 (342)
Q Consensus        93 ~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~--  170 (342)
                      .+|++|++++++|+|++|+.  .++||.|||.+++.+++++++.+.+..||++++.+.. |++......+++...+..  
T Consensus        79 ~~g~~D~~~~~~t~t~eR~~--~~~FS~py~~~~~~~~~~~~~~~~~~~dl~~~~~~~~-g~~~~~~~~~~~~~~~~~~~  155 (263)
T 1mqi_A           79 VYGKADIAIAPLTITLVREE--VIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAY-GTLDSGSTKEFFRRSKIAVF  155 (263)
T ss_dssp             HTTSCSEECSSCBCCHHHHT--TEEECSCSEEECEEEEEETTCSCCSHHHHHTCSSSEE-ECBSSSHHHHHHHHCCSHHH
T ss_pred             HHCCCCEEEECCEECHHHHH--HCCCCCCEECCCEEEEEECCCCCCCHHHHHCCCCEEE-EEECHHHHHHHHHHCCCCHH
T ss_conf             40232889875460676752--0454576452652898631553234777606723699-88617799999986322046


Q ss_pred             ----------CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             ----------5078747989999998739602998250479999983678001002564442371010002777579999
Q gi|254780170|r  171 ----------YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNI  240 (342)
Q Consensus       171 ----------~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~  240 (342)
                                ...+...+..+.+..+.+++.++.+.+.+....... ..+|.+...+++.++.+|+|+++|++++ |++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ia~~k~~~-L~~~  233 (263)
T 1mqi_A          156 DKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIE-QRKPCDTMKVGGNLDSKGYGIATPKGSS-LGNA  233 (263)
T ss_dssp             HHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTSEEEEEEHHHHHHHT-TSTTCCEEEESCCSCCEEECCEEETTCT-THHH
T ss_pred             HHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCEEEECCHHHHHHHH-HCCCCCEEEECCCCCCCEEEEEEECCHH-HHHH
T ss_conf             6789987515772574260899999985387546633489999999-7299876982456776138999908809-9999


Q ss_pred             HHHHHHHHH
Q ss_conf             887744331
Q gi|254780170|r  241 VSWTHYAMV  249 (342)
Q Consensus       241 V~W~~~ali  249 (342)
                      ++=.+..|.
T Consensus       234 in~aL~~l~  242 (263)
T 1mqi_A          234 VNLAVLKLN  242 (263)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 25 
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, alternative splicing, calcium, cell junction, coiled coil, glycoprotein, ION transport; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.93  E-value=9.3e-27  Score=188.44  Aligned_cols=189  Identities=10%  Similarity=0.028  Sum_probs=141.6

Q ss_pred             CCEEEEHHHHHHHHHHHHCCCCCEEEEE-----------ECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC
Q ss_conf             9880150999999999967982202599-----------81431002677439627998124325320110278435322
Q gi|254780170|r   54 GDWKGFDVDFCRALSSAIFDDPSKIQYL-----------PLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT  122 (342)
Q Consensus        54 G~~~GfDVDl~raiAaal~gd~~kVe~v-----------~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~  122 (342)
                      +.+.||||||+++||+.++   .+++|+           +.+|+.++++|++|++|++++++|+|.+|+  ..++|+.||
T Consensus        66 ~~~~Gf~iDL~~~ia~~lg---~~~e~~~v~d~~~~~~~~~~w~~~i~~l~~g~~Di~i~~~t~t~eR~--~~v~Fs~Py  140 (294)
T 2rc8_A           66 KCCYGYCIDLLEQLAEDMN---FDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARS--QVIDFTSPF  140 (294)
T ss_dssp             EEEESHHHHHHHHHHHHHT---EEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHH--TTSEECSCS
T ss_pred             CCCEEEHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHH--HHCEECCCE
T ss_conf             7738568999999999819---96799980688634536788899999997799659953013687688--531741204


Q ss_pred             CCCCEEEEEECC-CCCCCHHH--HCCCC----EEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC--CEEE
Q ss_conf             344023463021-13475364--17862----034313426999999998629985078747989999998739--6029
Q gi|254780170|r  123 YFDGQGFIMHKK-KGISSVSQ--LSGAS----ICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH--RCDA  193 (342)
Q Consensus       123 ~~dgq~~lVrk~-~~i~s~~d--L~G~~----I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G--r~DA  193 (342)
                      +..++.++++++ ..+.+..|  |.|++    +|+..|++.+..+.+.+.......+...+++.+++++++..|  |+||
T Consensus       141 ~~~~~~i~~~~~~~~~~~~~d~~l~~~~~g~~~Gtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~g~vDa  220 (294)
T 2rc8_A          141 FSTSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDA  220 (294)
T ss_dssp             EEEEEEEEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSE
T ss_pred             ECCCCEEEEECCCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCEEEE
T ss_conf             12660478745887544322124047733238996664289999886404333103553038779999876427815899


Q ss_pred             EEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             98250479999983678001002564442371010002777579999887744331
Q gi|254780170|r  194 YTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMV  249 (342)
Q Consensus       194 ~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali  249 (342)
                      ++.|.+.+.....+.++ .+..++++.++.+++|+++++|+ .|++.++=.+..|.
T Consensus       221 ~i~d~~~~~~~~~~~~~-~~l~~v~~~~~~~~~gia~~k~s-~l~~~in~~l~~l~  274 (294)
T 2rc8_A          221 FIMDKALLDYEVSIDAD-CKLLTVGKPFAIEGYGIGLPPNS-PLTSNISELISQYK  274 (294)
T ss_dssp             EEEEHHHHHHHHHTCSS-SCEEECSCCEEEEEECCEECTTC-THHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHCCC-CCEEEECCCCCCCEEEEEECCCH-HHHHHHHHHHHHHH
T ss_conf             98236889999986899-86899068777621899980984-99999999999999


No 26 
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.93  E-value=8e-25  Score=176.17  Aligned_cols=207  Identities=15%  Similarity=0.094  Sum_probs=156.2

Q ss_pred             CEEEEEEECCCCCCEEECCC-----CCEEEEHHHHHHHHHHHHCCCCCEEEEEECC------------CCCCHHHHHCCC
Q ss_conf             94999871789883068898-----9880150999999999967982202599814------------310026774396
Q gi|254780170|r   34 GFLKCGINTGLVGFAEVKAN-----GDWKGFDVDFCRALSSAIFDDPSKIQYLPLN------------AKERFLALQSKQ   96 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~~d~~-----G~~~GfDVDl~raiAaal~gd~~kVe~v~~~------------~~~rf~aL~sG~   96 (342)
                      .+||||+.. .|||.|.+++     |+++||||||+++||+.++   .+++|+.+.            |...+..+.+|+
T Consensus         3 ~~lrV~~~~-~pP~~~~~~~~~g~~~~~~G~~vdl~~~ia~~lg---~~~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~   78 (265)
T 2v3u_A            3 VVLRVVTVL-EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLG---FNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKR   78 (265)
T ss_dssp             CEEEEEECC-BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHT---CEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS
T ss_pred             CEEEEEECC-CCCCEEECCCCCCCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             689999855-5997798067789999788809999999999839---967999846753143126888899877760685


Q ss_pred             EEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHH----------
Q ss_conf             2799812432532011027843532234402346302113475364178620343134269999999986----------
Q gi|254780170|r   97 IDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKA----------  166 (342)
Q Consensus        97 vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~----------  166 (342)
                      +|++++++|+|++|  ...++|+.|||.+++++++++........++.++. +...|++......+.+..          
T Consensus        79 ~D~~~~~~~~t~~R--~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (265)
T 2v3u_A           79 ADIGISALTITPDR--ENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQT-DIPYGTVLDSAVYQHVRMKGLNPFERDS  155 (265)
T ss_dssp             CSEECSSCBCCHHH--HTTEEECSCSEEECEEEEEETTCCCCSHHHHHTCS-SSCEECBTTSHHHHHHHHHHTCTTCSCT
T ss_pred             EEEEECCCCCCHHH--HHHEEECCCEEECCEEEEECCCCCCCCHHHHCCCE-EEEEEEEECHHHHHHHHHCCCCCCCCCH
T ss_conf             43660446546777--52152046436513344420235532256746862-5664013001799999863875211202


Q ss_pred             ---------CCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf             ---------29985078747989999998739602998250479999983678001002564442371010002777579
Q gi|254780170|r  167 ---------HNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEW  237 (342)
Q Consensus       167 ---------~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w  237 (342)
                               .....+++.+.+..+++.++..|+ |+++.|...+...... ..+.++.++++.++.+|++++++|++ +|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~K~s-~l  232 (265)
T 2v3u_A          156 MYSQMWRMINRSNGSENNVLESQAGIQKVKYGN-YAFVWDAAVLEYVAIN-DPDCSFYTVGNTVADRGYGIALQHGS-PY  232 (265)
T ss_dssp             HHHHHHHHHCC-----CCBSSHHHHHHHHHHSS-CEEEEEHHHHHHHHHH-CTTCCEEEEC---CCEEECCEEETTC-TT
T ss_pred             HHHHHHHHHHCCCCCCEECCCHHHHHHHHHCCC-EEEEECHHHHHHHHHH-CCCCCEEECCCCCCCCEEEEEEECCH-HH
T ss_conf             578999987315540011168999999997699-0999537999999985-78975898157777733899996981-99


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9998877443311
Q gi|254780170|r  238 YNIVSWTHYAMVT  250 (342)
Q Consensus       238 ~d~V~W~~~ali~  250 (342)
                      ++.++..+..|..
T Consensus       233 ~~~~n~~l~~~~~  245 (265)
T 2v3u_A          233 RDVFSQRILELQQ  245 (265)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999997


No 27 
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2i0c_A* 3c31_A* 1txf_A* 3c32_A* 3c33_A* 3c34_A* 3c35_A* 3c36_A* 2wky_A* ...
Probab=99.88  E-value=9.5e-22  Score=156.68  Aligned_cols=206  Identities=11%  Similarity=0.067  Sum_probs=147.0

Q ss_pred             CCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-------------CCCCCHHHH
Q ss_conf             794999871789883068898-------988015099999999996798220259981-------------431002677
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPL-------------NAKERFLAL   92 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~-------------~~~~rf~aL   92 (342)
                      ..+|+|++.. +|||.+.+++       |+++|||||++++||+.++-   +++|+.+             +|+.+++.|
T Consensus         3 ~ktl~v~t~~-~~P~~~~~~~~~~~~~n~~~~G~dvDl~~~ia~~lg~---~~~~~~v~~~~~~~~~~~~~~w~~~~~~l   78 (259)
T 3g3k_A            3 NRSLIVTTIL-EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGF---TYEIRLVEDGKYGAQDDVNGQWNGMVREL   78 (259)
T ss_dssp             CCCEEEEECC-BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred             CEEEEEEECC-CCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             8699999786-4898746468887678995688589999999998099---75899735555453343567889998764


Q ss_pred             HCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC---CCCEEEEECCCHHHHHHHH------
Q ss_conf             4396279981243253201102784353223440234630211347536417---8620343134269999999------
Q gi|254780170|r   93 QSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS---GASICVQAGTTTELTLADY------  163 (342)
Q Consensus        93 ~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~---G~~I~v~~GTT~e~~l~~~------  163 (342)
                      ++|++|++++++++|.+|  ...++|+.||+.+++.+++++++++....++.   +.++++..+..........      
T Consensus        79 ~~g~~D~~~~~~~~t~eR--~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (259)
T 3g3k_A           79 IDHKADLAVAPLAITYVR--EEVIDFSKPFMTLGISILYRKGTPIDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYD  156 (259)
T ss_dssp             HTTSCSEECSSCBCCHHH--HTTEEECSCSEEECEEEEEESSSSCCSHHHHHTCSSSEEEEETTSHHHHHHHHCCSHHHH
T ss_pred             HCCCCCEEEECCCCCHHH--HHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             102357786358679999--953546687122560455216886553345404542245677242278888872015778


Q ss_pred             --HHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf             --986299850787479899999987396029982504799999836780010025644423710100027775799998
Q gi|254780170|r  164 --FKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIV  241 (342)
Q Consensus       164 --~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V  241 (342)
                        ............+.+..........+. ++++.|.+.+......   ..+..++...+..+++++++++++ .|++.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ia~~k~s-~L~~~i  231 (259)
T 3g3k_A          157 KMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQR---NCNLTQIGGLIDSKGYGVGTPMGS-PYRDKI  231 (259)
T ss_dssp             HHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHH---CTTEEEESSCSSCEEECCEEETTC-THHHHH
T ss_pred             HHHHHHCCHHHHHHHCCHHHHHHHHHCCC-EEEEECHHHHHHHHHC---CCCEEECCCCCCCCEEEEEEECCH-HHHHHH
T ss_conf             99875200024565300788887750576-5998236889998741---650342265667721899992984-999999


Q ss_pred             HHHHHHHH
Q ss_conf             87744331
Q gi|254780170|r  242 SWTHYAMV  249 (342)
Q Consensus       242 ~W~~~ali  249 (342)
                      +=.+..|.
T Consensus       232 n~al~~m~  239 (259)
T 3g3k_A          232 TLAILKLQ  239 (259)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 28 
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=99.56  E-value=1.3e-14  Score=111.53  Aligned_cols=212  Identities=10%  Similarity=0.019  Sum_probs=137.1

Q ss_pred             HHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHCCCEEEEEECC
Q ss_conf             68999857949998717898830688989880150999999999967982202599814-31002677439627998124
Q gi|254780170|r   26 ILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQSKQIDILSRNT  104 (342)
Q Consensus        26 tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~sG~vDil~~~~  104 (342)
                      .|-....++.+.|..     |+.|   ...+.|+.-.+-+    +.  +..+||++... +.+++++|.+|++|+.+.++
T Consensus         8 ~l~~~~~~~~~v~a~-----Pl~~---s~~y~g~a~gl~~----~~--~gl~ve~~~~~g~~~~i~al~sg~~D~a~~~~   73 (231)
T 2ozz_A            8 ALLSHVDINNVVCAM-----PLPY---TRLYEGLASGLKA----QF--DGIPFYYAHMRGADIRVECLLNGVYDMAVVSR   73 (231)
T ss_dssp             HHHTTSSCSSEEEEE-----CCCC---SHHHHHHHHHHHH----TT--TTSCEEEEECSCHHHHHHHHHTTSCSEEEEEH
T ss_pred             HHHHHCCCCCEEEEE-----CCCH---HHHHHHHHHHHHH----HH--CCCCEEEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf             999743637737993-----4431---8888888766999----85--39828999944839999999869947797271


Q ss_pred             CCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHH
Q ss_conf             32532011027843532234402346302113475364178620343134269999999986299850787479899999
Q gi|254780170|r  105 DWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDA  184 (342)
Q Consensus       105 T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~  184 (342)
                      +.+..+.. .+.+ ...+......++++++++|++++||+||+|++..||+.+..|.+..- ..-+++.+.+ +..++..
T Consensus        74 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~dLkGk~Vgv~~~s~~~~~L~~~g~-~~~~v~~v~~-~~~~~~~  149 (231)
T 2ozz_A           74 LAAESYLS-QNNL-CIALELGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFF-GDSDVERVDL-SYHESLQ  149 (231)
T ss_dssp             HHHHHHHH-HSCE-EEEEECCTTSSSCCEEEEEETTCGGGCCEEEECTTCHHHHHHHHHHH-TTSCCEEEEC-CHHHHHH
T ss_pred             HHHHHHHH-CCCC-EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHCCC-CCCCEEEEEC-CHHHHHH
T ss_conf             88999996-6998-59999503332245545667831059999998899869999998499-8455599974-8899999


Q ss_pred             HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC--CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             987396029982504799999836780010025644--42371010002777579999887744331121233015208
Q gi|254780170|r  185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI--ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNI  261 (342)
Q Consensus       185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~--iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv  261 (342)
                      +|.+|++||++.+..........  ++....+..+.  .......+++|++++....+|+    +++.+++.-=.|..+
T Consensus       150 al~~G~iDa~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vi~vrk~~~~l~~lv~----a~v~~~~v~~~Q~~v  222 (231)
T 2ozz_A          150 RIVKGDVDAVIWNVVAENELTML--GLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLR----AVVDKHALLAHQQRV  222 (231)
T ss_dssp             HHHHTSCCEEEEEC-CHHHHHHT--TEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHH----HHCCHHHHHHHHHHH
T ss_pred             HHHCCCEEEEEECCHHHHHHHHC--CCCEEEECCCCCCCCCCEEEEEECCCCHHHHHHHH----HHHHHHHHHHHHHHH
T ss_conf             98719734999683899998637--87437710466555675499999699899999999----998489999999999


No 29 
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=99.46  E-value=1.4e-12  Score=98.61  Aligned_cols=203  Identities=17%  Similarity=0.175  Sum_probs=125.3

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHH--HHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEECCC-CC
Q ss_conf             57949998717898830688989880150999999--9999679822025998143-10026774396279981243-25
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRA--LSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSRNTD-WT  107 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~ra--iAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~~~T-~T  107 (342)
                      +..+||+|+.+.+.|+-              +++.  +-+.-+.+ .+|+|+..+. .....+|.+|++|+...+.+ ..
T Consensus        27 ~~~~lrIg~~~~~~~~~--------------va~~~G~f~~~~~~-~~v~~~~~~~g~~~~~al~sG~~D~~~~~~~~~~   91 (324)
T 3ksx_A           27 EPAQLRIGYQKAVSSLV--------------LAKQHRLLEQRFPR-TKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPL   91 (324)
T ss_dssp             CCSEEEEEEETTCHHHH--------------HHHHHTHHHHHCTT-SEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHH
T ss_pred             CCCEEEEEEECCCCHHH--------------HHHHHCHHHHHCCC-CCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf             99759999616865799--------------99984869783899-8279997897799999998499288964659999


Q ss_pred             CCCHHCCCCCCCC--CCCC--CCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC---CEEEECCHH
Q ss_conf             3201102784353--2234--40234630211347536417862034313426999999998629985---078747989
Q gi|254780170|r  108 LLREISLGLAFRP--ITYF--DGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKY---HPIVFERVE  180 (342)
Q Consensus       108 ~~Rd~~~~v~Fs~--~~~~--dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~  180 (342)
                      ..|  ..+.++..  .++.  .+..++++++++|++++||+||+|++..|++.+..+..++++.|++.   +++.. +..
T Consensus        92 ~~~--~~G~~~~~v~~~~~~~~~~~iv~~~~s~i~s~~DLkGK~v~v~~gs~~~~~l~~~L~~~Gl~~~dV~~v~~-~~~  168 (324)
T 3ksx_A           92 FAQ--AAGADLLYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPA  168 (324)
T ss_dssp             HHH--HTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHH
T ss_pred             HHH--HCCCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEC-CHH
T ss_conf             999--87998599998963798428998089999997893899898756873067999999987997323540125-826


Q ss_pred             HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCC--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998739602998250479999983678001002564442371010002777--579999887744331121233
Q gi|254780170|r  181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGD--TEWYNIVSWTHYAMVTAEELG  255 (342)
Q Consensus       181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD--~~w~d~V~W~~~ali~Aee~g  255 (342)
                      +...+|.+|++|+++.-.+.......   +...+++....-...|....+-..+  .+-.++|+-.+.++..|.++-
T Consensus       169 ~~~~al~~G~vDa~~~~~p~~~~~~~---~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~v~~fl~a~~~a~~~~  242 (324)
T 3ksx_A          169 NARAAFAAGQVDAWAIWDPWYSALTL---DGSARLLANGEGLGLTGGFFLSSRRYATAWGPFVQQVMGTLNQADGLL  242 (324)
T ss_dssp             HHHHHHHTTCCSEEEEETTHHHHHHH---TTSEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCEEEECCHHHHHHHH---CCCCEEEECCCCCCCCCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             66666531350099981579999997---499489971444687664389858888679899999999999999999


No 30 
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=99.33  E-value=1.3e-10  Score=86.25  Aligned_cols=175  Identities=15%  Similarity=0.139  Sum_probs=113.7

Q ss_pred             CEEEEEECC-CCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCC--CCCC--CCEEEEEECCCCCCCHHHHCCCCEEE
Q ss_conf             202599814-310026774396279981243253201102784353--2234--40234630211347536417862034
Q gi|254780170|r   76 SKIQYLPLN-AKERFLALQSKQIDILSRNTDWTLLREISLGLAFRP--ITYF--DGQGFIMHKKKGISSVSQLSGASICV  150 (342)
Q Consensus        76 ~kVe~v~~~-~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~--~~~~--dgq~~lVrk~~~i~s~~dL~G~~I~v  150 (342)
                      .+||++..+ +.....+|.+|++|+.+.+.+.... ....+.++..  ..+.  ....++++++++|++++||+||+|++
T Consensus        32 ~~Ve~~~~~~g~~~~~al~~G~iD~~~~~~~~~l~-~~~~G~~~~~v~~~~~~~~~~~~~~~~~s~i~s~~DLkGK~Iav  110 (308)
T 2x26_A           32 SKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIF-AQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAF  110 (308)
T ss_dssp             SEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHHH-HHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEE
T ss_pred             CEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHH-HHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHCCCCCCC
T ss_conf             80799978987999999984997889957399999-99879897999997057744899987898879988946972233


Q ss_pred             EECCCHHHHHHHHHHHCCCC---CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEE
Q ss_conf             31342699999999862998---507874798999999873960299825047999998367800100256444237101
Q gi|254780170|r  151 QAGTTTELTLADYFKAHNMK---YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLA  227 (342)
Q Consensus       151 ~~GTT~e~~l~~~~~~~~~~---~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg  227 (342)
                      ..|++++..+..++++.|++   ++++.. ...++.++|.+|++||++.-.+.+.-....  . ....+....-...+..
T Consensus       111 ~~g~~~~~~~~~~L~~~Gl~~~dv~~v~~-~~~~~~~al~~g~vda~~~~ep~~~~~~~~--g-~~~~l~~~~~~~~~~~  186 (308)
T 2x26_A          111 QKGSSSHNLLLRALRQAGLKFTDIQPTYL-TPADARAAFQQGNVDAWAIWDPYYSAALLQ--G-GVRVLKDGTDLNQTGS  186 (308)
T ss_dssp             CTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTSSSEEEEETTHHHHHHHH--S-SEEEEEESTTSCCCCE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEEEC-CCHHHHHHHHCCCCCEEEECCHHHHHHHHC--C-CCEEEEECCCCCCCCE
T ss_conf             58865899999999983998424476305-825677776422554899636169999975--9-9489973565687744


Q ss_pred             -EECCCC-CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -000277-7579999887744331121233
Q gi|254780170|r  228 -PAIIQG-DTEWYNIVSWTHYAMVTAEELG  255 (342)
Q Consensus       228 -~avr~g-D~~w~d~V~W~~~ali~Aee~g  255 (342)
                       .++++. =.+-.++|+-.+.++..|-++-
T Consensus       187 ~~~~~~~~~~~~p~~v~~fl~a~~~a~~~~  216 (308)
T 2x26_A          187 FYLAARPYAEKNGAFIQGVLATFSEADALT  216 (308)
T ss_dssp             EEEEEHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             899616888879699999999999999999


No 31 
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.22  E-value=1e-09  Score=80.42  Aligned_cols=213  Identities=15%  Similarity=0.115  Sum_probs=135.3

Q ss_pred             HCCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-------------CCCCCHHH
Q ss_conf             5794999871789883068898-------988015099999999996798220259981-------------43100267
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLPL-------------NAKERFLA   91 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~~-------------~~~~rf~a   91 (342)
                      ....|++++.. .|||.+...+       .+++||.+|+.+.+|+.+.-   ..++...             +|...+..
T Consensus       382 ~~~~l~v~~~~-~~P~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~lnf---~~~~~~~~~~~~g~~~~~~~~~~g~~~~  457 (823)
T 3kg2_A          382 EQKTVVVTTIL-ESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGF---KYKLTIVGDGKYGARDADTKIWNGMVGE  457 (823)
T ss_dssp             CCCCEEEEECC-CTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTC---CEEEEECSSCCCCCBCTTTCCBCHHHHH
T ss_pred             CCCCCCCCCCC-CCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf             67410005545-6981999478888899864535769999998864596---0799987778758765888751456643


Q ss_pred             HHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCC-CH------------------------------
Q ss_conf             74396279981243253201102784353223440234630211347-53------------------------------
Q gi|254780170|r   92 LQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGIS-SV------------------------------  140 (342)
Q Consensus        92 L~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~-s~------------------------------  140 (342)
                      |.+|++|+.++++++|.+|  ...++|+.||+.++..++|++..... ++                              
T Consensus       458 l~~~~~D~ai~~~~it~~r--~~~v~fs~p~~~~~~~~~v~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~~~~~~~~~~  535 (823)
T 3kg2_A          458 LVYGKADIAIAPLTITLVR--EEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVS  535 (823)
T ss_dssp             HHTTSCSEECSCCBCCHHH--HTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC
T ss_pred             HHCCCCCEEEEEEEECHHH--HHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2000234699999970787--51224353114533699997577777208898703638999999999999999999999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780170|r  141 --------------------------------------------------------------------------------  140 (342)
Q Consensus       141 --------------------------------------------------------------------------------  140 (342)
                                                                                                      
T Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~p~s~~~R~l~~~~~l~~lil~~~Y~a~L~s~l  615 (823)
T 3kg2_A          536 RFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL  615 (823)
T ss_dssp             -----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             85546431400025655555421110069999999999986677643346568999999999999999999998777521


Q ss_pred             ------------HHHC--C-CCEEEEECCCHHHHHHHHHHHCCCC------------CCEEEECCHHHHHHHHHCCC-EE
Q ss_conf             ------------6417--8-6203431342699999999862998------------50787479899999987396-02
Q gi|254780170|r  141 ------------SQLS--G-ASICVQAGTTTELTLADYFKAHNMK------------YHPIVFERVEEIDAAYRAHR-CD  192 (342)
Q Consensus       141 ------------~dL~--G-~~I~v~~GTT~e~~l~~~~~~~~~~------------~~~v~~~~~~~a~~al~~Gr-~D  192 (342)
                                  +||.  + ..+++..++..+.    ++......            -....+.+..+.+..+..++ ..
T Consensus       616 t~~~~~~~i~sl~dL~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (823)
T 3kg2_A          616 TVERMVSPIESAEDLSKQTEIAYGTLDSGSTKE----FFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKY  691 (823)
T ss_dssp             HHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHH----HHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSE
T ss_pred             CCCCCCCCCCCHHHHHHCCCCEEEEECCCHHHH----HHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCE
T ss_conf             345457897899999747885599964707999----9986552679999998632474223589999999997269868


Q ss_pred             EEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             99825047999998367800100256444237101000277757999988774433112123301520
Q gi|254780170|r  193 AYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKN  260 (342)
Q Consensus       193 A~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~n  260 (342)
                      |+..|...+...  ...++.++.++++.+...++++++++|= -|++..+..+.-   -.|.|+-+.=
T Consensus       692 a~~~~~~~~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~k~S-p~~~~~n~~i~~---l~e~Gl~~~~  753 (823)
T 3kg2_A          692 AYLLESTMNEYI--EQRKPCDTMKVGGNLDSKGYGIATPKGS-SLGTPVNLAVLK---LSEQGLLDKL  753 (823)
T ss_dssp             EEEEEHHHHHHH--HTSTTCCEEEESCCSSCEEECCEEETTC-SSHHHHHHHHHH---HHHTTHHHHH
T ss_pred             EEEECHHHHHHH--HHCCCCCEEEECCCCCCCCEEEEECCCC-HHHHHHHHHHHH---HHHCCHHHHH
T ss_conf             999627999999--9617988599586145661799989988-418999999999---9747899999


No 32 
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=99.15  E-value=2.5e-10  Score=84.35  Aligned_cols=153  Identities=14%  Similarity=0.171  Sum_probs=101.9

Q ss_pred             EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEECCCCCCC----
Q ss_conf             499987178988306889898801509999999999679822025998143-100267743962799812432532----
Q gi|254780170|r   35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSRNTDWTLL----  109 (342)
Q Consensus        35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~~~T~T~~----  109 (342)
                      .|++|+..  |       .|.|--+-..+|+.+.+..  +...++.++... .+.+..|.+|++|+.+.....-..    
T Consensus        20 ~l~i~tg~--~-------gg~~~~~g~~ia~~~~~~~--~gi~~~~~~t~Gs~~N~~~l~~g~~d~a~~~~~~~~~~~~~   88 (314)
T 1us5_A           20 FITIGSGS--T-------TGVYFPVATGIAKLVNDAN--VGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQG   88 (314)
T ss_dssp             EEEEECCC--T-------TSSHHHHHHHHHHHHHHHT--SSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHT
T ss_pred             EEEEEECC--C-------CCCHHHHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHC
T ss_conf             48999799--9-------9714999999999997358--98489998078889999999769971999750899999846


Q ss_pred             -----CH--HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHHHHHHHHHHHCCCCC---CEEEECC
Q ss_conf             -----01--10278435322344023463021134753641786203431-3426999999998629985---0787479
Q gi|254780170|r  110 -----RE--ISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA-GTTTELTLADYFKAHNMKY---HPIVFER  178 (342)
Q Consensus       110 -----Rd--~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e~~l~~~~~~~~~~~---~~v~~~~  178 (342)
                           .+  ....+.-..+.|.....++||++++|++++||+||+|.+.. |+.++.+....++..++..   ..+.+.+
T Consensus        89 ~g~~~~~~~~~~~lr~v~~~~~~~~~~~v~~ds~I~s~~DL~Gkrv~~g~~gs~~~~~~~~~l~~~g~~~~d~~~v~~~~  168 (314)
T 1us5_A           89 CCIPAFEGKPVKTIRALAALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVS  168 (314)
T ss_dssp             CSSTTTTTCCCTTEEEEEEEEEEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCC
T ss_pred             CCCCCCCCCCCCCEEEEEEECHHHHEEEECCCCCCCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf             68753345754040278870511331330377776778880887751368885136689999998099834463234268


Q ss_pred             HHHHHHHHHCCCEEEEEECC
Q ss_conf             89999998739602998250
Q gi|254780170|r  179 VEEIDAAYRAHRCDAYTGDI  198 (342)
Q Consensus       179 ~~~a~~al~~Gr~DA~~~D~  198 (342)
                      ..++..++.+|++||++.-.
T Consensus       169 ~~~~~~al~~g~iDa~~~~~  188 (314)
T 1us5_A          169 ASQGIQLMQDKRADALFYTV  188 (314)
T ss_dssp             HHHHHHHHHTTSCSEEEEEE
T ss_pred             HHHHHHHHHCCCCCEEEEEC
T ss_conf             88999997479752799825


No 33 
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=99.06  E-value=2.7e-09  Score=77.77  Aligned_cols=127  Identities=15%  Similarity=0.090  Sum_probs=91.3

Q ss_pred             CEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCC--CCCCCC-CCEEEEEECCCCCCCHHHHCCCCEEEE
Q ss_conf             20259981-43100267743962799812432532011027843--532234-402346302113475364178620343
Q gi|254780170|r   76 SKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLREISLGLAF--RPITYF-DGQGFIMHKKKGISSVSQLSGASICVQ  151 (342)
Q Consensus        76 ~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~F--s~~~~~-dgq~~lVrk~~~i~s~~dL~G~~I~v~  151 (342)
                      .+|+++.. .+...+.+|.+|++|+....... ..+....+.+.  ...++. .+++++|+++++|++++||+||+|++.
T Consensus        47 ldV~~~~~~~~~~~~~al~~G~~D~~~~~~~~-~~~a~~~g~~~~~i~~~~~~~~~~l~v~~~s~I~s~~DLkGk~i~v~  125 (365)
T 2de3_A           47 IELDVLSGQQGTVHFTYDQPAYTRFGGEIPPL-LSEGLRAPGRTRLLGITPLLGRQGFFVRDDSPITAAADLAGRRIGVS  125 (365)
T ss_dssp             CEEEECBGGGTTHHHHCCSTTEEEEECSHHHH-HHHHTTCTTSEEEEEEEEECCSEEEEEETTCSCCSGGGGTTCEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHCCCCCEEEECHHH-HHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCCHHHHCCCEEECC
T ss_conf             91799967882799999975983789305899-99997489986999997438850899978877788699789835025


Q ss_pred             --------------------------ECCCHHHHHHHHHHHCCCC---CCEEEECC------------------------
Q ss_conf             --------------------------1342699999999862998---50787479------------------------
Q gi|254780170|r  152 --------------------------AGTTTELTLADYFKAHNMK---YHPIVFER------------------------  178 (342)
Q Consensus       152 --------------------------~GTT~e~~l~~~~~~~~~~---~~~v~~~~------------------------  178 (342)
                                                .||+++..+..+++..|++   +++|..+.                        
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~l~~~l~~~Gl~~~dV~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (365)
T 2de3_A          126 ASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPD  205 (365)
T ss_dssp             HHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTCCCHHHHHHSSBSSHHHHSTT
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             66420135666543102333212457786799999999998499989937620480444444431000013444321234


Q ss_pred             -HHHHHHHHHCCCEEEEEECCHHHHH
Q ss_conf             -8999999873960299825047999
Q gi|254780170|r  179 -VEEIDAAYRAHRCDAYTGDISALYA  203 (342)
Q Consensus       179 -~~~a~~al~~Gr~DA~~~D~s~La~  203 (342)
                       .....++|.+|++||++.-.+...-
T Consensus       206 ~~~~~~aAL~~G~VDA~~~~~P~~~~  231 (365)
T 2de3_A          206 VARGQAAVLASGDVDALYSWLPWAGE  231 (365)
T ss_dssp             HHHHHHHHHHSSSCSEEEEEHHHHHH
T ss_pred             CCHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             42048999976982699965755999


No 34 
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=99.02  E-value=1.5e-09  Score=79.42  Aligned_cols=203  Identities=13%  Similarity=0.085  Sum_probs=125.6

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCC-CCCCC
Q ss_conf             794999871789883068898988015099999999996798220259981-4310026774396279981243-25320
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTD-WTLLR  110 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T-~T~~R  110 (342)
                      ..+|++|+-+...+-       +....--.|.+.+.++++   .+|++++. ++...+.+|.+|++|+.+-+.. +-..+
T Consensus         3 ~~~l~fg~~p~~~~~-------~~~~~~~pl~~~L~~~lG---~~V~~~~~~dy~~~ieal~~g~vDia~~~~~~~~~a~   72 (310)
T 3n5l_A            3 QPVINFGIISTESSQ-------NLKSIWEPFLKDMSQQTG---YQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAV   72 (310)
T ss_dssp             CCEEEEEECCSSCHH-------HHHHHHHHHHHHHHHHHS---SEEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHH
T ss_pred             CCEEEEEECCCCCHH-------HHHHHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHHH
T ss_conf             986999977899999-------999999999999999769---9579997599999999997699868998928999998


Q ss_pred             HHCCCCCCCCCCCCCC-----EEEEEECCCCCCCHHHHC----CCCEEEE-ECCCHHHHHHH--HHHHCCCC----CCEE
Q ss_conf             1102784353223440-----234630211347536417----8620343-13426999999--99862998----5078
Q gi|254780170|r  111 EISLGLAFRPITYFDG-----QGFIMHKKKGISSVSQLS----GASICVQ-AGTTTELTLAD--YFKAHNMK----YHPI  174 (342)
Q Consensus       111 d~~~~v~Fs~~~~~dg-----q~~lVrk~~~i~s~~dL~----G~~I~v~-~GTT~e~~l~~--~~~~~~~~----~~~v  174 (342)
                      +.....-|..+...+|     ..++||+|++|++++||.    |++++.. .+||+--.+..  .+...++.    ++.+
T Consensus        73 ~~~~~~~~~~~~~~~g~~~y~s~liv~~ds~i~sl~DL~gk~kg~~~a~~d~~Stsg~l~p~~~l~~~~gi~~~~~f~~v  152 (310)
T 3n5l_A           73 DRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRT  152 (310)
T ss_dssp             HHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEE
T ss_pred             HCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             60598056652034788761089999688776657777410000000247876327889999999986499840042347


Q ss_pred             EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC-CCHHHCCCCCCCCCCC---EEEECCCC-CHHHHHHHHHHHHHH
Q ss_conf             74798999999873960299825047999998367-8001002564442371---01000277-757999988774433
Q gi|254780170|r  175 VFERVEEIDAAYRAHRCDAYTGDISALYALKLTND-RPSEHVILPDIISKSP---LAPAIIQG-DTEWYNIVSWTHYAM  248 (342)
Q Consensus       175 ~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~-~p~~~~il~e~iskEP---lg~avr~g-D~~w~d~V~W~~~al  248 (342)
                      .+.+++.+..++.+|++||.+.+...+.-+....+ ..++.+|+-+.   +|   ..+++|++ +++.++.++=.+..|
T Consensus       153 ~~~sh~~~~~aV~~G~vDaa~~~~~~~~~~~~~~~~~~~~lrvI~~S---~~iP~~~i~~~~~l~~e~~~~i~~all~~  228 (310)
T 3n5l_A          153 LNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKS---PLIPGDPLVWRNNLSDEQKNKLRDFFFKY  228 (310)
T ss_dssp             EECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEE---EEEECCEEEEETTSCHHHHHHHHHHHHHC
T ss_pred             ECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCHHHHHCCEEEEEC---CCCCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             60783889999986998789851799999998470445162699867---99888738992989999999999999846


No 35 
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=98.97  E-value=4.1e-09  Score=76.69  Aligned_cols=173  Identities=16%  Similarity=0.080  Sum_probs=106.0

Q ss_pred             CEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCC-CCCHHCCCCCC---CCCCCCCCEEEEEECCCCCCCHHHHCCCCEEE
Q ss_conf             20259981-431002677439627998124325-32011027843---53223440234630211347536417862034
Q gi|254780170|r   76 SKIQYLPL-NAKERFLALQSKQIDILSRNTDWT-LLREISLGLAF---RPITYFDGQGFIMHKKKGISSVSQLSGASICV  150 (342)
Q Consensus        76 ~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T-~~Rd~~~~v~F---s~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v  150 (342)
                      .+||+++. ++...+.+|.+|++|+.+.++... ..|  ..+.++   ...+-..+.+++++++++|++++||+||+|++
T Consensus        34 l~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~l~~~~~~~i~~~~DLkGK~v~~  111 (302)
T 3ix1_A           34 LDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILAR--SKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLTVGY  111 (302)
T ss_dssp             EEEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHH--HTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTSEEEE
T ss_pred             CEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHH--HCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHCCCCCCC
T ss_conf             7189995798059999997799898997758999987--33488589985405897369985377988878956762217


Q ss_pred             EECCCHHHHHHHHHHHCCCCC---CEEEECCHHHHHHHHHCCCEEEEEECC--HHHHHHHHHCCCCHHHCCC-CCCCCCC
Q ss_conf             313426999999998629985---078747989999998739602998250--4799999836780010025-6444237
Q gi|254780170|r  151 QAGTTTELTLADYFKAHNMKY---HPIVFERVEEIDAAYRAHRCDAYTGDI--SALYALKLTNDRPSEHVIL-PDIISKS  224 (342)
Q Consensus       151 ~~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~~a~~al~~Gr~DA~~~D~--s~La~~~~~~~~p~~~~il-~e~iskE  224 (342)
                      ..+++++..+..+++..|++.   +++...  .+...+|.+|++||++..-  ......+.. ..  +..++ +....-.
T Consensus       112 ~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~--~~~~~al~~G~iDa~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~g~~  186 (302)
T 3ix1_A          112 PGIPVNEPILKTMVEAAGGDYEQVHLMDVG--FELGASIVSGRADAVVGTYINHEYPVLKHE-GH--DISYFNPVDYGVP  186 (302)
T ss_dssp             CSCTTHHHHHHHHHHHTTCCGGGCEEEECT--TCHHHHHHHSSSSEEEEEETTTHHHHHHHT-TC--CEEEECGGGTTCC
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEECCC--CCHHHHHHCCCCCEECCCCCCCHHHHHHHC-CC--CCCCCCHHHCCCC
T ss_conf             899778999999999728997611784588--438999985997700065466089999862-87--6322258870988


Q ss_pred             CE---EEECCCC-CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10---1000277-7579999887744331121233
Q gi|254780170|r  225 PL---APAIIQG-DTEWYNIVSWTHYAMVTAEELG  255 (342)
Q Consensus       225 Pl---g~avr~g-D~~w~d~V~W~~~ali~Aee~g  255 (342)
                      ++   ..++++. -.+=.++|+-.+.|+..|-++-
T Consensus       187 ~~~~~~~~~~~~~~~~~p~~v~~f~~A~~~a~~~~  221 (302)
T 3ix1_A          187 EYDELVLISNEAYVEESGEVLAAFWRAALKGYEWM  221 (302)
T ss_dssp             CCCSEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEECCHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             87663110469999879699999999999999999


No 36 
>3hn0_A Nitrate transport protein; YP_001302749.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Parabacteroides distasonis}
Probab=98.78  E-value=1.1e-08  Score=73.89  Aligned_cols=144  Identities=15%  Similarity=0.099  Sum_probs=97.0

Q ss_pred             CEEEEEEECCCCC--C-EEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCC
Q ss_conf             9499987178988--3-06889898801509999999999679822025998-143100267743962799812432532
Q gi|254780170|r   34 GFLKCGINTGLVG--F-AEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLL  109 (342)
Q Consensus        34 G~L~vGv~~~~pp--f-s~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~  109 (342)
                      -+||||+-.+.+.  + .....+|...+                 ..+++.. -+......+|.+|++|+....+.....
T Consensus         5 ~~irv~~~~~p~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~s~~~~~~~l~~G~~D~~~~~~~~~~~   67 (283)
T 3hn0_A            5 TVIKVSVLRGPSVIAFADWLENPPIIDN-----------------KKVQVKVVDSPDLAQALLIKQETDIAVLPMINAAN   67 (283)
T ss_dssp             CEEEEEEESSTHHHHTHHHHHSCCEETT-----------------EEEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCC-----------------CCEEEEEECCHHHHHHHHHCCCCCEEEECHHHHHH
T ss_conf             6599992589618999999984474578-----------------98689995799999999977999899736899999


Q ss_pred             CHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHH
Q ss_conf             011027843532234402346302113475364178620343-13426999999998629985078-7479899999987
Q gi|254780170|r  110 REISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYR  187 (342)
Q Consensus       110 Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~  187 (342)
                      - ...++++.-.      +..++....|.+.+||+||+|++. .||+.+..+..+++++|++.+.. .+.+..+..++|.
T Consensus        68 ~-~~~G~~i~ii------a~~~~g~~~ivs~~DLkGk~i~~~~~gs~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~al~  140 (283)
T 3hn0_A           68 L-YNKGIKIKLA------GCPIWGTLYLVEKTPLKEPALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGIL  140 (283)
T ss_dssp             H-HHTTCSCEEE------EEEECCCCEEEECSSCCSCCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHH
T ss_pred             H-HHCCCCEEEE------EEECCCCCEEEEHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf             9-9689974899------98415863486378749899999389978999999999977998440367438288899986


Q ss_pred             CCCEEEEEECCHHH
Q ss_conf             39602998250479
Q gi|254780170|r  188 AHRCDAYTGDISAL  201 (342)
Q Consensus       188 ~Gr~DA~~~D~s~L  201 (342)
                      +|++||.+.-.+..
T Consensus       141 ~g~vDaa~~~eP~~  154 (283)
T 3hn0_A          141 AGKVNRAVLGEPFL  154 (283)
T ss_dssp             HTSCSEEEECTTHH
T ss_pred             CCCCCEEEECCHHH
T ss_conf             79977898443689


No 37 
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=98.34  E-value=1.1e-05  Score=55.05  Aligned_cols=183  Identities=11%  Similarity=0.061  Sum_probs=103.7

Q ss_pred             HHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCC
Q ss_conf             9985794999871789883068898988015099999999996798220259981-431002677439627998124325
Q gi|254780170|r   29 DIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWT  107 (342)
Q Consensus        29 ~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T  107 (342)
                      .-.+..+|++|+.++  |++-         +-.+..+.+++..+   .+||+++. ++.....||.+|++|+-+.....-
T Consensus        18 ~~~~~~~i~ig~~~~--~~~~---------~~~~~v~~~~k~~G---i~Ve~v~f~d~~~~n~AL~~G~iD~n~~q~~p~   83 (275)
T 3gxa_A           18 NGAAKKEIVFGTTVG--DFGD---------MVKEQIQPELEKKG---YTVKLVEFTDYVRPNLALAEGELDINVFQHKPY   83 (275)
T ss_dssp             -----CEEEEEEETT--HHHH---------HHHHTHHHHHHTTT---CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHH
T ss_pred             CCCCCCEEEEEEECC--CHHH---------HHHHHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEECCCCHHH
T ss_conf             778885289996069--8799---------99999899999659---879999957833578998669955431445788


Q ss_pred             CC---CHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHHHHHCCC--------------
Q ss_conf             32---01102784353223440234630211347536417-8620343134269999999986299--------------
Q gi|254780170|r  108 LL---REISLGLAFRPITYFDGQGFIMHKKKGISSVSQLS-GASICVQAGTTTELTLADYFKAHNM--------------  169 (342)
Q Consensus       108 ~~---Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~~~~~~~--------------  169 (342)
                      +.   ++....+....+++....++..+   +++|++||. |++|++...++.+..+-..+...|+              
T Consensus        84 l~~~~~~~g~~l~~v~~~~~~~~glys~---k~ksl~dl~~G~kIaip~d~sn~~raL~~L~~~Gli~l~~~~~~~~~t~  160 (275)
T 3gxa_A           84 LDDFKKEHNLDITEVFQVPTAPLGLYPG---KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASK  160 (275)
T ss_dssp             HHHHHHHHTCCEEEEEECCBCCCEEEES---SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCG
T ss_pred             HHHHHHHCCCCEEEEEEEECCCEEEEEC---CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf             9999997799679985631155066632---6565413589998998248636889999998669531168877554540


Q ss_pred             --------CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCH
Q ss_conf             --------850787479899999987396029982504799999836780010025644423710100027775
Q gi|254780170|r  170 --------KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDT  235 (342)
Q Consensus       170 --------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~  235 (342)
                              .++++..+ ......+|  +.+|+.+...+  ......+ +|.+....+ .-+.-+..+++|++|.
T Consensus       161 ~di~~n~~~l~~~~~~-~~~l~~~l--~dvD~avi~~~--~~~~agl-~~~~~l~~e-~~~~y~nvivvr~~~~  227 (275)
T 3gxa_A          161 ADIAENLKNIKIVELE-AAQLPRSR--ADVDFAVVNGN--YAISSGM-KLTEALFQE-PSFAYVNWSAVKTADK  227 (275)
T ss_dssp             GGEEECTTCCEEEEEC-GGGHHHHT--TTSSEEEECHH--HHHHTTC-CGGGCSEEC-CCCTTCCEEEEEGGGT
T ss_pred             CHHHHCCCCCEEEECC-HHHHHHHC--CCCCEEEECCC--HHHHCCC-CHHHCCCCC-CCCCEEEEEEEECCCC
T ss_conf             0043276564599856-66631312--67558996464--6877599-823400027-7876369999807677


No 38 
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=98.32  E-value=2.9e-06  Score=58.62  Aligned_cols=181  Identities=10%  Similarity=0.022  Sum_probs=102.4

Q ss_pred             CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCC---
Q ss_conf             94999871789883068898988015099999999996798220259981-43100267743962799812432532---
Q gi|254780170|r   34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLL---  109 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~---  109 (342)
                      .+||+|+.+. |...           -.++++...+.-+   .+|||++. ++.+...||.+|++|+.+.+.+..+.   
T Consensus         3 ~ti~iG~~~~-~~~~-----------~l~~~k~~~k~~G---l~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~   67 (241)
T 1xs5_A            3 ETVGVGVLSE-PHAR-----------LLEIAKEEVKKQH---IELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFN   67 (241)
T ss_dssp             EEEEEEECST-THHH-----------HHHHHHHHHHTTT---EEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHH
T ss_pred             CEEEEEECCC-CHHH-----------HHHHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHH
T ss_conf             3299996069-8599-----------9999999999749---88999993881778999976997679855788999988


Q ss_pred             CHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCCC-CC-----------CE---
Q ss_conf             0110278435322344023463021134753641-78620343134269999999986299-85-----------07---
Q gi|254780170|r  110 REISLGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHNM-KY-----------HP---  173 (342)
Q Consensus       110 Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~-~~-----------~~---  173 (342)
                      |.....+-....++..+.+++.++   ++++.|+ +|++|++..+++++..+...+.+.++ ..           .+   
T Consensus        68 ~~~~~~l~~v~~~~~~~~~l~~~~---~~s~~d~~~gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~~~~~~Di~~~  144 (241)
T 1xs5_A           68 QEHNGDLVSVGNVHVEPLALYSRT---YRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQN  144 (241)
T ss_dssp             HHHTCCEEEEEEEEECCCEEECSS---CCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEEC
T ss_pred             HHCCCCEEEEEEECCCCEEEEECC---CCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHC
T ss_conf             546973899988414654888368---67766734887698258882799999999975881343688876776566534


Q ss_pred             ---EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCC
Q ss_conf             ---8747989999998739602998250479999983678001002564442371010002777
Q gi|254780170|r  174 ---IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGD  234 (342)
Q Consensus       174 ---v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD  234 (342)
                         +.+-..+.+..++..|.+|+.+.-.+.+.  ........+..+.++.....+..+++|+.+
T Consensus       145 ~~~~~~~~~~~a~~a~~~~~vda~~~~~p~~~--~a~~~~~~~~l~~~~~~~~~~~~lv~r~~~  206 (241)
T 1xs5_A          145 VRNVVLQEVESALLPRVFDQVDGAVINGNYAI--MAGLSARRDGLAVEPDASAYANVLVVKRGN  206 (241)
T ss_dssp             TTCCEEEEECGGGHHHHGGGSSEEEECHHHHH--HTTCCTTTTCSEECSCGGGGCEEEEEETTC
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCEEEECCCHHH--HHCCCCCCCEEEECCCCCCEEEEEEECCHH
T ss_conf             34454257447677774277757996464899--855887667799637898637999983401


No 39 
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium}
Probab=98.22  E-value=2e-07  Score=65.90  Aligned_cols=206  Identities=12%  Similarity=0.096  Sum_probs=111.0

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCC-CCCC
Q ss_conf             579499987178988306889898801509999999999679822025998-14310026774396279981243-2532
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTD-WTLL  109 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T-~T~~  109 (342)
                      +..+|++|+....      +.+....-|---|++.+.++++ .+.+|+++. .+....+.+|.+|++|+.+-+.. +-..
T Consensus         6 ~~~~l~~~~~~~~------~~~~~~~~~~~pl~~~Ls~~l~-~~V~V~~~~~~Dy~~~ieal~~g~~Dia~~gp~~yv~a   78 (344)
T 3myu_A            6 SDNTLIFNISLDH------NADTSIEKFFTVFSKKLSGKLN-KKINVNFNIVDDSFTKINNIQANKADFAFVNSQAIASN   78 (344)
T ss_dssp             --CEEEEEECCCT------TGGGTHHHHHHHHHHHHHHHHT-SCCEEEEEECCCHHHHHHHHHTTSCSEEEECGGGCCCC
T ss_pred             CCCCEEEEECCCC------CCHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHH
T ss_conf             8881699960488------8578899999999999999868-96589999648799999999779956899790999975


Q ss_pred             CHHCC-----------CCCCC------------------------------------------------CCCCCCCEEEE
Q ss_conf             01102-----------78435------------------------------------------------32234402346
Q gi|254780170|r  110 REISL-----------GLAFR------------------------------------------------PITYFDGQGFI  130 (342)
Q Consensus       110 Rd~~~-----------~v~Fs------------------------------------------------~~~~~dgq~~l  130 (342)
                      ++...           ..+..                                                ...+|.| .++
T Consensus        79 ~~~~~~~~l~~~~~~~~~d~~~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Y~~-~I~  157 (344)
T 3myu_A           79 NWFGYTPLIQTLTTAFKEDLELDYYEDGNLQKKAEKTNLLFLSPPYKEWDDIKQKWTGNRYDFLYEPSKLVSFYRS-MIL  157 (344)
T ss_dssp             TTSSEEEEEEEEEEEETTBCSCCCGGGTHHHHHHHHHHHHHHSSCGGGCCTTTTTBCSSSBGGGEEEEEEESEEEE-EEE
T ss_pred             HHHCCCCHHHEEHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-EEE
T ss_conf             6515530200001013455554222466312322221000124543334443223567554221024567663268-999


Q ss_pred             EE----------CCCCCCCHHHHCCCCEEEEE-CCCHHHHH-HHHHHHCCCC-CC------EEEECCHHHHHHHHHCCCE
Q ss_conf             30----------21134753641786203431-34269999-9999862998-50------7874798999999873960
Q gi|254780170|r  131 MH----------KKKGISSVSQLSGASICVQA-GTTTELTL-ADYFKAHNMK-YH------PIVFERVEEIDAAYRAHRC  191 (342)
Q Consensus       131 Vr----------k~~~i~s~~dL~G~~I~v~~-GTT~e~~l-~~~~~~~~~~-~~------~v~~~~~~~a~~al~~Gr~  191 (342)
                      |+          ++++|++++||+|++|+... +||+--.+ ..++.+++.. .+      .+...+++.+..++.+|++
T Consensus       158 v~~~~~~~~~ikk~s~ik~l~DLkGk~iaf~d~~StSGyl~P~~~L~~~g~~~~~~~~~~~~~~~g~h~~~~~aV~~G~~  237 (344)
T 3myu_A          158 ITGSASEITAIKKAWNEKNWNQFMKFGIGHGQTNSASRFELPDLLFRKHFAKNYPGLQNAINSDPDKFAVVRGREIGINK  237 (344)
T ss_dssp             EEESHHHHHHHHHHHHHTCHHHHHTTCEEECCTTCTTTTHHHHHHHHHHHCTTCCCHHHHHHHCGGGEEECCGGGTTSST
T ss_pred             EECCCHHHHHHHCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEEECCCCHHHHHHHHHCCCC
T ss_conf             80572011001036553788896698788348973122388999999814877761221144037857999999977998


Q ss_pred             EEEEE-CCHHHH-------HHHH-HC---CCCHHHCCCCCCCCCCCE---EEECCCC-CHHHHHHHHHHHHHH
Q ss_conf             29982-504799-------9998-36---780010025644423710---1000277-757999988774433
Q gi|254780170|r  192 DAYTG-DISALY-------ALKL-TN---DRPSEHVILPDIISKSPL---APAIIQG-DTEWYNIVSWTHYAM  248 (342)
Q Consensus       192 DA~~~-D~s~La-------~~~~-~~---~~p~~~~il~e~iskEPl---g~avr~g-D~~w~d~V~W~~~al  248 (342)
                      ||-.+ |...-.       .... ..   ..+++.+|+-+.   +|+   .+++|++ |+++++.++=++..|
T Consensus       238 Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~S---~~iP~~~i~v~~~L~~e~~~~I~~all~l  307 (344)
T 3myu_A          238 NIKIVFDDANSFSWTQNIKGSKRPFYTPIDPNDRLEILTYS---DPLLYDIGIVSNNLSRIYQKAIGEIFIEL  307 (344)
T ss_dssp             TCCEEEEETTGGGGSCCCC---CCSSCCSSTTSEEEEEEEE---EEEECCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEEC---CCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             87987332034431013101345542265655544899978---99888728993899999999999999961


No 40 
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=98.19  E-value=1.8e-05  Score=53.65  Aligned_cols=163  Identities=14%  Similarity=0.142  Sum_probs=87.5

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCC-
Q ss_conf             794999871789883068898988015099999999996798220259981-431002677439627998124325320-
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLR-  110 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~R-  110 (342)
                      ..++++|+.+. +       ...|     +..+..++..+   .+||+++. ++.....||.+|++|+...+....+.- 
T Consensus        38 ~k~i~IG~~~~-~-------~~~~-----~~~~~~~kk~G---l~Ve~~~F~d~~~~~~AL~~G~ID~~~~~~~p~l~~~  101 (295)
T 1p99_A           38 DKKVTIGVASN-D-------TKAW-----EKVKELAKKDD---IDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQY  101 (295)
T ss_dssp             --CEEEEESSS-C-------CHHH-----HHHHHHHGGGT---CCEEEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHH
T ss_pred             CCEEEEEECCC-C-------HHHH-----HHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEEECCCHHHHHHH
T ss_conf             96499996798-3-------8999-----99999999759---8899998178277999997599676751789999999


Q ss_pred             H-HCCCCCC--CCCCCCCCEEEEEECCCCCCCHHH-HCCCCEEEEECCCHHHHHHHHHHHCCC-CC-----------CE-
Q ss_conf             1-1027843--532234402346302113475364-178620343134269999999986299-85-----------07-
Q gi|254780170|r  111 E-ISLGLAF--RPITYFDGQGFIMHKKKGISSVSQ-LSGASICVQAGTTTELTLADYFKAHNM-KY-----------HP-  173 (342)
Q Consensus       111 d-~~~~v~F--s~~~~~dgq~~lVrk~~~i~s~~d-L~G~~I~v~~GTT~e~~l~~~~~~~~~-~~-----------~~-  173 (342)
                      . ...+.++  ..+.+....++  . ...+.++.| ++|++|++..+++++..+-..+...++ +.           .+ 
T Consensus       102 ~k~~~g~~l~~v~~~~~~~~~~--~-~~~~~~i~d~~~Gk~Ia~p~~~s~~~~~l~~l~~~gli~l~~~~~~~~t~~DI~  178 (295)
T 1p99_A          102 KKAHKGTKISALSTTVLAPLGI--Y-SDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDIT  178 (295)
T ss_dssp             HHHCTTCCEEEEEEEEECCCEE--E-CSSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEE
T ss_pred             HHHCCCCEEEEECCCCCCCCCC--C-CCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHH
T ss_conf             9767995599944521123101--2-656663211258985783368728999999998669277458888777876665


Q ss_pred             -----EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC
Q ss_conf             -----87479899999987396029982504799999836780010025
Q gi|254780170|r  174 -----IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL  217 (342)
Q Consensus       174 -----v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il  217 (342)
                           +.+-..+.+..+...|.+||.+.-.+.+  .+... .|....|+
T Consensus       179 ~n~~~~~~~~~~~a~~a~a~~~vDaa~i~~p~~--~~a~~-~~~~~~l~  224 (295)
T 1p99_A          179 SNPKHLKITAVDAQQTARALSDVDIAVINNGVA--TKAGK-DPKNDPIF  224 (295)
T ss_dssp             ECTTCCEEEEECGGGTTGGGGTSSEEEECHHHH--HHTTC-CTTTSCSE
T ss_pred             HCCCCCCCCCCCHHHHHHHCCCCCEEEECCHHH--HHHCC-CCCCCEEE
T ss_conf             444444545640667787327764899554399--98278-86666588


No 41 
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=98.16  E-value=1.6e-05  Score=53.84  Aligned_cols=184  Identities=12%  Similarity=0.005  Sum_probs=105.1

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCC-CC
Q ss_conf             79499987178988306889898801509999999999679822025998-14310026774396279981243253-20
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTL-LR  110 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~-~R  110 (342)
                      ..+||+|+.+. | -+      ..  +. -.++-+.+..+   .+||+++ .++...+.||.+|++|+...+.+... ..
T Consensus         5 ~~~irvG~~~~-~-~~------~~--~~-~~~k~~~e~~G---l~Ve~~~f~~g~~~~~Al~~G~iD~~~~g~~~~~~~~   70 (237)
T 3k2d_A            5 TSKVKVGVMAG-A-EA------QV--AE-VAAKVAKEKYG---LDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQ   70 (237)
T ss_dssp             CCCEEEEEETT-H-HH------HH--HH-HHHHHHHHHHC---CCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHHH
T ss_pred             CCEEEEEEECC-C-HH------HH--HH-HHHHHHHHHCC---CEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHH
T ss_conf             87389996079-8-59------99--99-99777898669---8899998088256899997699777875457899864


Q ss_pred             HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHC-CCCCC-----------E-----
Q ss_conf             110278435322344023463021134753641786203431342699999999862-99850-----------7-----
Q gi|254780170|r  111 EISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAH-NMKYH-----------P-----  173 (342)
Q Consensus       111 d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~-~~~~~-----------~-----  173 (342)
                      ....++.+....-+....+.++.++.++..++++|++|++..+++.+..+...+... +++.+           +     
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kGk~ia~~~~~s~~~~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~~~  150 (237)
T 3k2d_A           71 VEDRDYKLTIAGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENPK  150 (237)
T ss_dssp             HHHHCCCEEEEEECCCCCCEEECSSCSCSTTCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCSSCCGGGEEECTT
T ss_pred             HCCCCCEEEEEECCCCCEEEEECCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf             10589507998425544069983787655464179879995588449999999998499744655444665020554533


Q ss_pred             -EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC
Q ss_conf             -87479899999987396029982504799999836780010025644423710--10002777
Q gi|254780170|r  174 -IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD  234 (342)
Q Consensus       174 -v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD  234 (342)
                       +.+........++..+++|+.+.=.+....  . ...|....++-+-. ..|+  -+++|+.|
T Consensus       151 ~~~~~~~~~~~~a~~~~~~da~~~~~p~~~~--a-~~~~~~~~i~~~~~-~~~~~~~~v~r~~~  210 (237)
T 3k2d_A          151 NITIMELDAAQLPRSLDDVALSIINTTYASS--I-NLTPEKDGVFVEDK-ESPYVNLIVARQDN  210 (237)
T ss_dssp             CCEEEEECGGGHHHHTTTSSEEEECHHHHGG--G-TCCHHHHCSEECCS-SSSCCEEEEEETTT
T ss_pred             CCCCCCCCHHHHHHHHHCCCEEEECCHHHHH--H-CCCCCCCEEEECCC-CCCEEEEEEECCCC
T ss_conf             2243333166779975247636966428887--2-05876555764588-98736999986500


No 42 
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=98.04  E-value=4.3e-05  Score=51.16  Aligned_cols=185  Identities=12%  Similarity=0.079  Sum_probs=101.7

Q ss_pred             EEEEEEC-CCCCCHHHH----HCCCEEEEEEC--CCC--CCCC-HHCCCCCC--CCCCCCCCEEEEE-----------EC
Q ss_conf             0259981-431002677----43962799812--432--5320-11027843--5322344023463-----------02
Q gi|254780170|r   77 KIQYLPL-NAKERFLAL----QSKQIDILSRN--TDW--TLLR-EISLGLAF--RPITYFDGQGFIM-----------HK  133 (342)
Q Consensus        77 kVe~v~~-~~~~rf~aL----~sG~vDil~~~--~T~--T~~R-d~~~~v~F--s~~~~~dgq~~lV-----------rk  133 (342)
                      .|+++.. +|.+...+|    .+|++|+....  +.+  ++.. .....+.+  .......|+.+.+           .+
T Consensus        64 dVel~~~~s~~~~~d~l~~g~a~G~lD~a~~~~~~~~a~~lg~~~~~~~~~~~~~~~~~~~g~~I~~s~~~~~~~~~~~~  143 (417)
T 2g29_A           64 DVEVLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNYKDLKVGTDA  143 (417)
T ss_dssp             TCEEEECSCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGGGGGCCCSCC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCC
T ss_conf             46899657827799999976424661400025116899998776437898889998736687479983232000344565


Q ss_pred             CCCCCCHHHHCCCCEEEEE-CCCHHHHHHHHHHHCCCC----CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Q ss_conf             1134753641786203431-342699999999862998----50787479899999987396029982504799999836
Q gi|254780170|r  134 KKGISSVSQLSGASICVQA-GTTTELTLADYFKAHNMK----YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTN  208 (342)
Q Consensus       134 ~~~i~s~~dL~G~~I~v~~-GTT~e~~l~~~~~~~~~~----~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~  208 (342)
                      ++.+++++||.|+||++.. +|+++..+..++++.|++    ++++.. ...++..+|.+|++|+++.-.+-..-  ...
T Consensus       144 ~~~i~s~~dLkGk~igv~~~~s~~~~~lr~~L~~~Gldp~~DV~iv~~-~p~~~~~aL~~G~iDa~~~~eP~~~~--a~~  220 (417)
T 2g29_A          144 APLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNAMESFCVGEPWPLQ--TVN  220 (417)
T ss_dssp             TTHHHHHHTSSSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHH--HHH
T ss_pred             CCCCCCHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEC-CHHHHHHHHHCCCCCEEEECCHHHHH--HHH
T ss_conf             432109888399989997898649999999999669986664389855-77999999966870389954449999--986


Q ss_pred             CCCHHHCCCCCCCCC-CCE-EEECCCCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             780010025644423-710-10002777-579999887744331121233015208988
Q gi|254780170|r  209 DRPSEHVILPDIISK-SPL-APAIIQGD-TEWYNIVSWTHYAMVTAEELGITQKNINQV  264 (342)
Q Consensus       209 ~~p~~~~il~e~isk-EPl-g~avr~gD-~~w~d~V~W~~~ali~Aee~git~~nv~~~  264 (342)
                      ...+...+....+.. -|- ..++++.= .+=.+.|+-.+.|++.|.++=-..+|-++.
T Consensus       221 ~g~g~~~~~~~di~~~~p~~vl~~~~~~~~~nPe~v~afv~Al~~A~~w~~~~~n~~ea  279 (417)
T 2g29_A          221 QGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQAENKEEM  279 (417)
T ss_dssp             HTSCEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             CCCCEEEEECHHHCCCCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             48858985104632898636999648988539899999999999999998376599999


No 43 
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=97.94  E-value=6.3e-05  Score=50.14  Aligned_cols=149  Identities=13%  Similarity=-0.008  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC--------------
Q ss_conf             99999999996798220259981----431002677439627998124325320110278435322--------------
Q gi|254780170|r   61 VDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT--------------  122 (342)
Q Consensus        61 VDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~--------------  122 (342)
                      -.+++.|.++-.|. .+|++.|.    ...+.+.+++.|.+|+..........+.....+...++.              
T Consensus        52 ~~fa~~V~e~T~G~-v~i~~~~~g~Lg~~~e~~e~v~~G~vd~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~  130 (365)
T 2hzl_A           52 EVLSKMLSEATDGN-FQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALAAAVPFSLSARGINAWHYHG  130 (365)
T ss_dssp             HHHHHHHHHHTTTS-SEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHTTCCTTCCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCE-EEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf             99999999975991-99999618643640658999976997531210112467774045641156768989999998613


Q ss_pred             --------------------CCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHH
Q ss_conf             --------------------344023463021134753641786203431342699999999862998507874798999
Q gi|254780170|r  123 --------------------YFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEI  182 (342)
Q Consensus       123 --------------------~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a  182 (342)
                                          +..|..........|++++||+|++|-+. |.     ..+.++.-|  +.++.. ...|.
T Consensus       131 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~pi~~~~DlkG~kiR~~-~~-----~~~~~~alG--a~pv~~-~~~Ev  201 (365)
T 2hzl_A          131 GGIDLYNEFLSQHNIVAFPGGNTGVQMGGWFRREINTVADMQGLKMRVG-GF-----AGKVMERLG--VVPQQI-AGGDI  201 (365)
T ss_dssp             SHHHHHHHHHGGGTEEEEEEEECCSBCCCEESSCCCSTGGGTTCEEECC-TT-----HHHHHHTTT--CEEECC-CTTSH
T ss_pred             CHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHHCCCEECCC-CH-----HHHHHHHCC--CEEEEC-CCCHH
T ss_conf             1177888878760717999735885045665988667688449873048-46-----899999749--724413-75027


Q ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf             99987396029982504799999836780010025644
Q gi|254780170|r  183 DAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI  220 (342)
Q Consensus       183 ~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~  220 (342)
                      +.+|++|-+|+................. ..+.+++..
T Consensus       202 y~ALqtGvVDg~~~~~~~~~~~~~~~~~-~~~~~~~~~  238 (365)
T 2hzl_A          202 YPALEKGTIDATEWVGPYDDEKLGFFKV-APYYYYPGW  238 (365)
T ss_dssp             HHHHHHTSCSEECCSCHHHHHHHTGGGT-CCEEEECBT
T ss_pred             HHHHHHCCEEEEECCCHHHHHHHCCHHE-EEEEECCCC
T ss_conf             7898718521576266557887055121-468850786


No 44 
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=97.90  E-value=8.4e-06  Score=55.68  Aligned_cols=197  Identities=13%  Similarity=0.013  Sum_probs=96.4

Q ss_pred             EEEEEEECC--CCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             499987178--988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   35 FLKCGINTG--LVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        35 ~L~vGv~~~--~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      .||||.-+-  ..|+.+                ++++  ++-...++++..++.+...+|.+|++|+..-+.. ..-+..
T Consensus         8 ~lRvG~i~~~~~~Pl~~----------------a~e~--~~~~~~~~~~~~~p~~l~~al~sG~iDi~~~~~~-~~~~~~   68 (291)
T 2nxo_A            8 RPRVGHIQFLNCLPLYW----------------GLAR--TGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLV-EFLKNA   68 (291)
T ss_dssp             CCEEEEECSGGGHHHHH----------------HHHH--TSGGGGCEEEEECHHHHHHHHHTTSCSEEEEEHH-HHHHTG
T ss_pred             CCEEEEECCCCCHHHHH----------------HHHH--CCCCCCEEEEECCHHHHHHHHHCCCCCEEECCHH-HHHHHC
T ss_conf             84779875345345999----------------9982--6888766998689999999998699889964299-998614


Q ss_pred             CCCCCCCCCC-CCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHH-HHHHHC-CCCCCEEEECCHHHHHHHHHCC
Q ss_conf             0278435322-344023463021134753641786203431342699999-999862-9985078747989999998739
Q gi|254780170|r  113 SLGLAFRPIT-YFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLA-DYFKAH-NMKYHPIVFERVEEIDAAYRAH  189 (342)
Q Consensus       113 ~~~v~Fs~~~-~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~-~~~~~~-~~~~~~v~~~~~~~a~~al~~G  189 (342)
                      .......... ...|. +.+....++++++||.||+|++..+|++...+. .+++++ +...+.+.... .....+...+
T Consensus        69 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~dLkGkkVav~~~ss~~~~l~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~  146 (291)
T 2nxo_A           69 DDLVAFPDIAVGCDGP-VMSCVIVSQVPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYYTCPP-DLSLMMQEAD  146 (291)
T ss_dssp             GGEEEEEEEEEEESSC-CSSEEEEESSCTTSCSSSEEEEETTCSHHHHHHHHHHHHTSCCCCEEEEECC-CSSCC-----
T ss_pred             CCCEEEEEEEECCCCC-CEEEEEECCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHCCC
T ss_conf             7544756654504688-5578973678978968985998089859999999999855999807986787-3688973689


Q ss_pred             CEEEEEECCHHHHHHHHHCCCCHHHCCCC--CC---CCCC--CEEEE-CCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             60299825047999998367800100256--44---4237--10100-027-77579999887744331121233
Q gi|254780170|r  190 RCDAYTGDISALYALKLTNDRPSEHVILP--DI---ISKS--PLAPA-IIQ-GDTEWYNIVSWTHYAMVTAEELG  255 (342)
Q Consensus       190 r~DA~~~D~s~La~~~~~~~~p~~~~il~--e~---iskE--Plg~a-vr~-gD~~w~d~V~W~~~ali~Aee~g  255 (342)
                      ..+++...  .+....... ...-..+..  +.   .+..  |.+.. ++. -..+-.++++..+.++.+|-++.
T Consensus       147 ~~~~i~~~--~~~~~~~~~-~~~~~~i~d~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~al~~a~~~~  218 (291)
T 2nxo_A          147 AAVLIGDA--ALRANMIDG-PRYGLDVHDLGALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAFLASRNLS  218 (291)
T ss_dssp             CCEEEHHH--HHHHHHTHH-HHTTCEEEEHHHHHHHHHSCCEEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECC--CHHHHHHHC-CCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             61798344--203898740-5786899884786745228986300011133322227899999999999999988


No 45 
>3b50_A Sialic acid-binding periplasmic protein SIAP; periplasmic binding protein, trap, sugar transport, transport, transport protein; HET: SLB; 1.40A {Haemophilus influenzae} PDB: 2v4c_A* 2cey_A 2cex_A
Probab=97.81  E-value=0.00035  Score=45.38  Aligned_cols=156  Identities=14%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC---------------
Q ss_conf             99999999967982202599814----31002677439627998124325320110278435322---------------
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPLN----AKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT---------------  122 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~~----~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~---------------  122 (342)
                      .+++.|.++..|. .+|++-|-.    ..+.+.+|++|.+|+.....+....+.-..++ |..|+               
T Consensus        23 ~fa~~V~e~t~G~-v~v~v~~~g~Lg~~~e~~~av~~G~vd~~~~~~~~~~~~~p~~~~-~~lP~~~~~~~~~~~~~~~~  100 (310)
T 3b50_A           23 MFAKEVKEKSQGK-IEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAV-FALPYVISNYNVAQKALFDT  100 (310)
T ss_dssp             HHHHHHHHHTTTS-EEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGG-GGSTTTSCSHHHHHHHHHSS
T ss_pred             HHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCCHHHH-CCCCCCCCCHHHHHHHHHCC
T ss_conf             9999999976994-999996698748879999999779957897533332445803442-15765679879888887511


Q ss_pred             ---------------------CCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf             ---------------------34402346302113475364178620343134269999999986299850787479899
Q gi|254780170|r  123 ---------------------YFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEE  181 (342)
Q Consensus       123 ---------------------~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~  181 (342)
                                           +..|...+. .+..|++++||+|+||-+..+...    .++++.-|.  +++.. ...+
T Consensus       101 ~~~~~~~~~~~~~~~v~~l~~~~~g~~~~~-~~~pi~s~~DlkG~kiRv~~~~~~----~~~~~~lGa--~pv~~-~~~e  172 (310)
T 3b50_A          101 EFGKDLIKKMDKDLGVTLLSQAYNGTRQTT-SNRAINSIADMKGLKLRVPNAATN----LAYAKYVGA--SPTPM-AFSE  172 (310)
T ss_dssp             HHHHHHHHHHHHHHCEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHHH----HHHHHHTTC--EEEEC-CGGG
T ss_pred             HHHHHHHHHHHHHCCEEEEEECCCCCCCCC-CCCCCCCHHHHCCCEEECCCCCHH----HHHHHHCCC--EEEEE-CCCC
T ss_conf             889999999987569368763157621146-798999968967884643686054----679997397--53673-5641


Q ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC
Q ss_conf             9999873960299825047999998367800100256444237101000
Q gi|254780170|r  182 IDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI  230 (342)
Q Consensus       182 a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av  230 (342)
                      .+.+|++|.+|+..+..+...+.+  +....+|..... ...-+..+++
T Consensus       173 vy~aLq~G~vDg~~~~~~~~~~~~--~~ev~~y~~~~~-~~~~~~~~~~  218 (310)
T 3b50_A          173 VYLALQTNAVDGQENPLAAVQAQK--FYEVQKFLAMTN-HILNDQLYLV  218 (310)
T ss_dssp             HHHHHHTTSSSEEEEEHHHHHHTT--GGGSCSEEECCC-CCEEEEEEEE
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHCC--CEEEEEEEECCC-CCCEEHHEEE
T ss_conf             568987598653327610012033--125546763277-5210001013


No 46 
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.75  E-value=0.0019  Score=40.69  Aligned_cols=233  Identities=12%  Similarity=0.070  Sum_probs=120.7

Q ss_pred             EEHHHHHHHHHHHH---CCCCCEEEEEECCCCCC-HHHHHCCCEE---EEEECC-CCC-CC--CHH-CCC-CCCCCCC--
Q ss_conf             15099999999996---79822025998143100-2677439627---998124-325-32--011-027-8435322--
Q gi|254780170|r   58 GFDVDFCRALSSAI---FDDPSKIQYLPLNAKER-FLALQSKQID---ILSRNT-DWT-LL--REI-SLG-LAFRPIT--  122 (342)
Q Consensus        58 GfDVDl~raiAaal---~gd~~kVe~v~~~~~~r-f~aL~sG~vD---il~~~~-T~T-~~--Rd~-~~~-v~Fs~~~--  122 (342)
                      |.|+ ++|.+|..+   +|.+..|+.+|-..... ...+...+-|   +++.+. ..+ ..  +.. ... -+|.+.-  
T Consensus        30 g~D~-~aR~~a~~l~k~lg~~v~V~N~pGagG~~g~~~~~~~~~Dg~t~~~~~~~~~~~~~l~~~~~~~~~~df~~i~~~  108 (312)
T 2f5x_A           30 PTDN-VARSLAESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLV  108 (312)
T ss_dssp             HHHH-HHHHHHHHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTTSEEEEEEE
T ss_pred             HHHH-HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCE
T ss_conf             8999-999999999998699879997898215999999995699998156521553445200157888848863300100


Q ss_pred             CCCCEEEEEECCCCCCCHHHHC------C--CCEEE-EECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE
Q ss_conf             3440234630211347536417------8--62034-3134269999999986299850787479899999987396029
Q gi|254780170|r  123 YFDGQGFIMHKKKGISSVSQLS------G--ASICV-QAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA  193 (342)
Q Consensus       123 ~~dgq~~lVrk~~~i~s~~dL~------G--~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA  193 (342)
                      ..+...++|++++++++++||-      .  .+++. -.|+........+.+..+.+++.|.|++..+++.++..|++|+
T Consensus       109 ~~~~~~~~v~~~s~~~t~~dli~~ak~~p~~v~~g~~g~gs~~~~~~~~~~~~~G~~~~~V~y~G~~~~~~al~~G~vd~  188 (312)
T 2f5x_A          109 VDVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDL  188 (312)
T ss_dssp             EEEEEEEEECTTCSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCE
T ss_pred             ECCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCC
T ss_conf             04756898679884033789999873387761464378994889999899986398444135677177777753683131


Q ss_pred             EEECCHHHHHHHHHCC-------CCHHHCCCCCC-----------CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9825047999998367-------80010025644-----------42371010002777579999887744331121233
Q gi|254780170|r  194 YTGDISALYALKLTND-------RPSEHVILPDI-----------ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELG  255 (342)
Q Consensus       194 ~~~D~s~La~~~~~~~-------~p~~~~il~e~-----------iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~g  255 (342)
                      .+...+........-.       .+.....+|+.           ...-..++++++|-++  ++|.|...++-      
T Consensus       189 ~~~~~~~~~~~~~~g~l~~La~~~~~r~~~~pdvPT~~E~G~~~~~~~~~~g~~ap~gtp~--~~v~~l~~a~~------  260 (312)
T 2f5x_A          189 MCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPK--PVVDKLVKSLQ------  260 (312)
T ss_dssp             EEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCH--HHHHHHHHHHH------
T ss_pred             CCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCCH--HHHHHHHHHHH------
T ss_conf             2357300144553467549998277655436899980652788750355202532677999--99999999999------


Q ss_pred             CCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCC-HHHHHHHHHHCCCHHHHHH
Q ss_conf             0152089886226717788762358876503337998-6799999997186999878
Q gi|254780170|r  256 ITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLT-KDWTYRIIRHMGNYGEMFD  311 (342)
Q Consensus       256 it~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~-~~~~~~~i~~vGNYgei~~  311 (342)
                             ++   ..||+.+..|--.+ -+.- .-.++ .++...+-.+.-.|+++..
T Consensus       261 -------~~---~~~pe~~~~~~~~g-~~~~-~~~~~~~~~~~~i~~~~~~~~~lik  305 (312)
T 2f5x_A          261 -------AG---LADPKFQERMKQLG-AEVL-TNEANPEALQAKVKQQVPQWAELFK  305 (312)
T ss_dssp             -------HH---HTCHHHHHHHHHTT-CEEC-GGGCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HH---HCCHHHHHHHHHCC-CCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             -------99---73999999999769-9614-7889999999999999999999999


No 47 
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=97.61  E-value=0.00031  Score=45.73  Aligned_cols=149  Identities=16%  Similarity=0.071  Sum_probs=89.2

Q ss_pred             EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             4999871789883068898988015099999999996798220259981----431002677439627998124325320
Q gi|254780170|r   35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLR  110 (342)
Q Consensus        35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~R  110 (342)
                      +|+++..  +|+-     + .+.-..-.+++.|.++..|. .+|++.|-    ...+.+.+++.|.+|+....+.....+
T Consensus        35 tlk~~~~--~p~~-----~-~~~~~~~~f~~~V~e~t~G~-i~i~~~~~g~Lg~~~e~~~~v~~G~~d~~~~~~~~~~~~  105 (361)
T 2zzv_A           35 RWRIQTA--WDAG-----T-VGYSLFQKFTERVKELTDGQ-LEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGR  105 (361)
T ss_dssp             EEEEEES--SCTT-----S-HHHHHHHHHHHHHHHHTTTS-EEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTT
T ss_pred             EEEEECC--CCCC-----C-HHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf             9999837--8998-----7-65799999999999976990-899995586657679999999759875254202224676


Q ss_pred             HHCCCCCCCCCCC-----------------------------------CCCEEEEEECCCCCCCHHHHCCCCEEEEECCC
Q ss_conf             1102784353223-----------------------------------44023463021134753641786203431342
Q gi|254780170|r  111 EISLGLAFRPITY-----------------------------------FDGQGFIMHKKKGISSVSQLSGASICVQAGTT  155 (342)
Q Consensus       111 d~~~~v~Fs~~~~-----------------------------------~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT  155 (342)
                      .-...+...++++                                   ..|...+ ..+..|++++||+|++|-+..+ .
T Consensus       106 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~-~s~kpi~s~~DlkG~kiR~~~~-~  183 (361)
T 2zzv_A          106 MPVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVGPVQHDLNII-HSKKPIRRFEDFKGVKLRVPGG-M  183 (361)
T ss_dssp             CGGGGGSSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEEEECCCCCCE-EESSCCCSGGGGTTCEEECCSH-H
T ss_pred             CCHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCEEEEEEECCCCCEEE-ECCCCCCCCCCCCCCEEEECCC-H
T ss_conf             6077772353124776999999871313678998875246299984047875034-2488765730137957993583-6


Q ss_pred             HHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHH
Q ss_conf             6999999998629985078747989999998739602998250479
Q gi|254780170|r  156 TELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISAL  201 (342)
Q Consensus       156 ~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~L  201 (342)
                          ..+.++..|.  .++.. ...|.+.++++|.+|+...-....
T Consensus       184 ----~~~~~~~lGa--~pv~i-~~~ev~~ALq~G~vDg~~~~~~~~  222 (361)
T 2zzv_A          184 ----IAEVFAAAGA--STVLL-PGGEVYPALERGVIDAADFVGPAV  222 (361)
T ss_dssp             ----HHHHHHHTTC--EEECC-CGGGHHHHHHTTSCSEEECSCHHH
T ss_pred             ----HHHHHHHCCC--CCEEC-CCHHHHHHHHHCCCCEEECCCHHH
T ss_conf             ----8999997699--51445-860467898745634021462655


No 48 
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=97.58  E-value=0.00063  Score=43.79  Aligned_cols=182  Identities=13%  Similarity=0.048  Sum_probs=110.8

Q ss_pred             EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH-------------HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf             02599814310026774396279981243253201-------------10278435322344023463021134753641
Q gi|254780170|r   77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE-------------ISLGLAFRPITYFDGQGFIMHKKKGISSVSQL  143 (342)
Q Consensus        77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd-------------~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL  143 (342)
                      .+++.-+-.++....+..|.+|+.+.+.-|-.|-.             ....+.|...    .-.+.+++++.+.++++|
T Consensus        47 ~i~~~~~R~~DIp~~V~~G~~DlGItG~D~l~E~~~~~~~~~~~~~v~~~~~Lgfg~~----rlvvAvP~~~~~~~~~~l  122 (299)
T 1h3d_A           47 PIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGC----RLSLATPVDEAWDGPLSL  122 (299)
T ss_dssp             SEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHHHHHHHHHTCCCCEEEEEECSCCCE----EEEEEEETTSCCCCGGGG
T ss_pred             CEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHCCCCCCEEEEEECCCCCE----EEEEEECCCCCCCCHHHH
T ss_conf             8799998889999999749966010217877641232010167762588752355745----899970343464464561


Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC
Q ss_conf             78620343134269999999986299850787479899999987396029982504799999836780010025644423
Q gi|254780170|r  144 SGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISK  223 (342)
Q Consensus       144 ~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk  223 (342)
                      +|++|+    |.+....++||+++|++++++......|.  +..-|-+|+++-=.+.=..+++     +..+++.+.+..
T Consensus       123 ~g~RIA----Tkyp~lt~~~~~~~gi~~~iv~~~GavE~--ap~~G~AD~IvDiv~TG~TLr~-----NgLk~i~~Il~S  191 (299)
T 1h3d_A          123 NGKRIA----TSYPHLLKRYLDQKGISFKSCLLNGSVEV--APRAGLADAICDLVSTGATLEA-----NGLREVEVIYRS  191 (299)
T ss_dssp             TTCEEE----ESCHHHHHHHHHHHTCCCEEEECSSCTTH--HHHTTSCSEEEEEESSCHHHHH-----TTEEEEEEEEEE
T ss_pred             CCCEEE----EHHHHHHHHHHHHCCCEEEEEECCCCEEC--CCCCCCEEEEEEECCCHHHHHH-----CCCEECCEEEEE
T ss_conf             784885----20145999999984980799325572111--6788850089997068577998-----799403348877


Q ss_pred             CCEEEECCCC-CH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             7101000277-75---799998877443311212330152089886226717788762
Q gi|254780170|r  224 SPLAPAIIQG-DT---EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL  277 (342)
Q Consensus       224 EPlg~avr~g-D~---~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l  277 (342)
                      +..=++=++. ++   ++.+-.---+.+-+.|..+=.-.-|+.    .+.-.++..+|
T Consensus       192 ~a~LI~n~~~~~~~k~~~i~~l~~rl~gvl~Ar~~~~i~~n~p----~~~l~~v~~~l  245 (299)
T 1h3d_A          192 KACLIQRDGEMEESKQQLIDKLLTRIQGVIQARESKYIMMHAP----TERLDEVIALL  245 (299)
T ss_dssp             CEEEEEESSCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCC----TTTHHHHHHHS
T ss_pred             EEEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECC----HHHHHHHHHHC
T ss_conf             9999992502010079999999999999996644889999787----77799999847


No 49 
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=97.50  E-value=0.00063  Score=43.81  Aligned_cols=156  Identities=11%  Similarity=-0.036  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCC-----------
Q ss_conf             99999999996798220259981----431002677439627998124325320110278435322344-----------
Q gi|254780170|r   61 VDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFD-----------  125 (342)
Q Consensus        61 VDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~d-----------  125 (342)
                      -.+++.|.++..|+ .+|++.+.    ...+.+.+|++|.+|+.....+....+.-...+ |..|++++           
T Consensus        21 ~~fa~~V~~~t~G~-v~i~~~~~g~L~~~~e~~~~v~~G~vd~~~~~~~~~~~~~P~~~~-~~lP~l~~~~~~~~~~~~~   98 (301)
T 2pfy_A           21 RQFADEVKAATAGA-LEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEI-DSVPFLASSFNESEKLWKA   98 (301)
T ss_dssp             HHHHHHHHHHTTTS-EEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGG-GGSTTTSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCCCEECHHHHHCCCCCHHC-CCCCCCCCCHHHHHHHHHH
T ss_conf             99999999875990-899995687658879999999769877522104665224730102-5676354779999987744


Q ss_pred             ----------------------CEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf             ----------------------0234630211347536417862034313426999999998629985078747989999
Q gi|254780170|r  126 ----------------------GQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEID  183 (342)
Q Consensus       126 ----------------------gq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~  183 (342)
                                            +...+. .+..|.+++||+|+||-+. |+..    .++++.-|  +.++..+ ..|.+
T Consensus        99 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~-~~~pi~s~~DlkG~kiR~~-~~~~----~~~~~~lG--a~pv~~~-~~evy  169 (301)
T 2pfy_A           99 TRPLLAQRLDKQGIVLVYGSPWPPQGIY-TKKPVAALADLKGTRFRAY-SAST----SHMAALMG--AVPTTVQ-TPEVP  169 (301)
T ss_dssp             HHHHHHHHHHTTTEEEEEEEECCCCEEE-ESSCCSSGGGGTTCEEEEC-SHHH----HHHHHHTT--SEEEECC-GGGHH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCEEE-ECCCCCCHHHHCCCEEECC-CHHH----HHHHHHCC--CCCCCCC-CCCHH
T ss_conf             4689999997359079775167761367-5799899689769867347-4569----99999758--8510244-42014


Q ss_pred             HHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC
Q ss_conf             99873960299825047999998367800100256444237101000
Q gi|254780170|r  184 AAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI  230 (342)
Q Consensus       184 ~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av  230 (342)
                      .+|++|.+|+..+..+.+...+..  .-.+|.+.. .....+..+++
T Consensus       170 ~aLq~G~vDg~~~~~~~~~~~~~~--ev~~~~~~~-~~~~~~~~~~~  213 (301)
T 2pfy_A          170 QAFSTGVIDAMLTSPATGVDSQAW--DYVKYYYDA-QAFIPQSFVIA  213 (301)
T ss_dssp             HHHHTTSCSBEEECHHHHHHTTGG--GTCCEEEEC-CCCCCEEEEEE
T ss_pred             HHHHCCCEECCCCCCCCCCCCCCC--EEEEEEECC-CCCHHHHHHHH
T ss_conf             677658410342473000123342--144577338-85204889998


No 50 
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=97.49  E-value=0.0021  Score=40.43  Aligned_cols=157  Identities=16%  Similarity=0.018  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCC----------
Q ss_conf             099999999996798220259981----431002677439627998124325320110278435322344----------
Q gi|254780170|r   60 DVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFD----------  125 (342)
Q Consensus        60 DVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~d----------  125 (342)
                      --++++.|.++-.|. .+|++.+.    ...+.+.++++|.+|+..........+.....+ |..|++++          
T Consensus        19 ~~~fa~~V~e~t~G~-v~i~i~~~g~L~~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~~-~~lPf~~~~~~~~~~~~~   96 (301)
T 2pfz_A           19 LTQFVKDVDSLSGGK-LKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYEL-DGLPFLATGYDASFKLYQ   96 (301)
T ss_dssp             HHHHHHHHHHHHTTS-CEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTG-GGSTTSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEE-EECCCCCCCHHHHHHHHH
T ss_conf             999999999875991-999996698678869999999769877100022464541754036-635767687688999863


Q ss_pred             -----------------------CEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHH
Q ss_conf             -----------------------023463021134753641786203431342699999999862998507874798999
Q gi|254780170|r  126 -----------------------GQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEI  182 (342)
Q Consensus       126 -----------------------gq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a  182 (342)
                                             +...+. ....|++++||+|+||-+. |.+    ..++++.-|  ..++..+ ..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~~~pi~~~~DlkG~kiR~~-~~~----~~~~~~~~G--a~pv~~~-~~ev  167 (301)
T 2pfz_A           97 AQKPFLEKKLASQGMMLLYSVAWPPQGIF-ANRDIKQVSDMKGLKWRAY-SPV----TAKIAELVG--AQPVTVQ-QAEL  167 (301)
T ss_dssp             HHHHHHHHHHHTTTEEEEEEEECCCCEEE-ESSCCSSGGGGTTCEEEES-SHH----HHHHHHHHT--CEEEECC-GGGH
T ss_pred             HHHHHHHHHHHHCCEEEEEECCCCCEEEE-CCCCCCCHHHHCCCEEEEC-CHH----HHHHHHHCC--CCCCCCC-CHHH
T ss_conf             04899998764232579875277622224-2889999588679858716-824----999999818--8744565-4068


Q ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC
Q ss_conf             999873960299825047999998367800100256444237101000
Q gi|254780170|r  183 DAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI  230 (342)
Q Consensus       183 ~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av  230 (342)
                      +.+|++|.+|+..+..+.....+.  ..-..|..... ..-.+..+++
T Consensus       168 ~~aLq~G~vDg~~~~~~~~~~~~~--~e~~~~~~~~~-~~~~~~~~~~  212 (301)
T 2pfz_A          168 AQAMATGVIDSYMSSGSTGFDTKT--YEYIKKFYDTE-AWLPKNAVLV  212 (301)
T ss_dssp             HHHHHTTSCSEEEECHHHHHHTTG--GGTCCEEECCC-CCCCEEEEEE
T ss_pred             HHHHHHCCCHHHCCCHHHHHHCCC--CEEEEEEEECC-CCCCHHHHHC
T ss_conf             999982531020057044431156--14420487358-7464144350


No 51 
>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP}
Probab=97.37  E-value=0.0077  Score=36.93  Aligned_cols=181  Identities=9%  Similarity=-0.025  Sum_probs=112.5

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
                      -+|.|++|+.+.....           +-.++.+.+.+.-  ...++++...++.+....|.+|++|+.+....   .. 
T Consensus         3 ~~G~lrIg~~~~~~~~-----------~l~~~l~~f~~~~--P~v~l~i~~~~~~~l~~~l~~g~~Dl~i~~~~---~~-   65 (209)
T 2ql3_A            3 VAGPIAVGCYPALGPT-----------ILPSMLYAFTAEY--PRASVEFREDTQNRLRTQLEGGELDVAIVYDL---DL-   65 (209)
T ss_dssp             CCEEEEEEECGGGTTT-----------THHHHHHHHHHHC--TTEEEEEEECCHHHHHHHHHTTSCSEEEEESS---SC-
T ss_pred             CCEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCEEEEEECC---CC-
T ss_conf             4289999968899999-----------9999999999988--79389999898289998760798358853046---54-


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCC------CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf             102784353223440234630211------347536417862034313426999999998629985078-7479899999
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKK------GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA  184 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~------~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~  184 (342)
                       ...+.+. +.+.+...++++++.      +.-++++|.+.......+......+.+++.+.+...+++ .+++...+..
T Consensus        66 -~~~~~~~-~~~~~~~~~v~~~~~~la~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (209)
T 2ql3_A           66 -SPEWQTV-PLMTREPMVVLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARA  143 (209)
T ss_dssp             -CTTEEEE-EEEEECCEEEEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHH
T ss_pred             -CCCHHEE-CCCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf             -2000000-01211222224689834517996679988339856328995188999999974999506998263777899


Q ss_pred             HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCC-CCCCEEEECCCCCH
Q ss_conf             9873960299825047999998367800100256--444-23710100027775
Q gi|254780170|r  185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DII-SKSPLAPAIIQGDT  235 (342)
Q Consensus       185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~i-skEPlg~avr~gD~  235 (342)
                      ...+|..=+++.+.....    ...+.....+.|  +.. ..-++..+.|++..
T Consensus       144 lv~~g~Gi~~lp~~~~~~----~~~~~~~~~~~pl~~~~~~~~~i~l~~~~~~~  193 (209)
T 2ql3_A          144 FVGRGLGWTLLLQRPRVD----VTYEGLPVVVKPIAEPKPASVAVVVAWHQEAT  193 (209)
T ss_dssp             HHHHTSCBEEESCCCSSC----BCTTSCBEEEEEBCSSCCCCEEEEEEEETTCC
T ss_pred             HHHCCCEEEEEEHHHHHH----HHHCCCCEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf             998199599902688877----86479978999778888744799999919897


No 52 
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.36  E-value=0.00052  Score=44.34  Aligned_cols=141  Identities=9%  Similarity=0.031  Sum_probs=83.6

Q ss_pred             HHHHHHHHH---CCCCCEEEEEECCCCC-CHHHHHCCC---EEEEEECC-CCCC---CCHHCCC----CCCCCCCC--CC
Q ss_conf             999999996---7982202599814310-026774396---27998124-3253---2011027----84353223--44
Q gi|254780170|r   63 FCRALSSAI---FDDPSKIQYLPLNAKE-RFLALQSKQ---IDILSRNT-DWTL---LREISLG----LAFRPITY--FD  125 (342)
Q Consensus        63 l~raiAaal---~gd~~kVe~v~~~~~~-rf~aL~sG~---vDil~~~~-T~T~---~Rd~~~~----v~Fs~~~~--~d  125 (342)
                      ++|.+|..+   +|.+..|+.+|-.... -...+.+.+   .-+++.+. +++.   -+.....    -||.+.-.  .+
T Consensus        36 ~aR~~a~~l~k~~g~~v~V~N~pGagG~~g~~~~~~~~~Dg~ti~~~~~~~~~~~~~~~~~~~~~d~~~d~~~v~~~~~~  115 (314)
T 2dvz_A           36 IARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANT  115 (314)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEECCCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCTTTSEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHEEECC
T ss_conf             99999999999869987999669827899999998569999847761240544334541357898768875554202204


Q ss_pred             CEEEEEECCCCCCCHHHHC------C--CCEEEE-ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEE
Q ss_conf             0234630211347536417------8--620343-134269999999986299850787479899999987396029982
Q gi|254780170|r  126 GQGFIMHKKKGISSVSQLS------G--ASICVQ-AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTG  196 (342)
Q Consensus       126 gq~~lVrk~~~i~s~~dL~------G--~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~  196 (342)
                      ...++|++++++++++||-      .  .+++.. .|+........+.+..+++++.|+|++..++++++.+|+||+.+.
T Consensus       116 ~~v~~v~~~s~~~t~~e~i~~ak~~p~~l~~g~~~~gs~~~~~~~~l~~~~G~~~~~Vpy~g~~~~~~all~G~vd~~~~  195 (314)
T 2dvz_A          116 ANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFD  195 (314)
T ss_dssp             CEEEEECTTSSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEE
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEEEC
T ss_conf             30343167777567899999986399845762046642245679999998599759940488424468886794789851


Q ss_pred             CCHHHHH
Q ss_conf             5047999
Q gi|254780170|r  197 DISALYA  203 (342)
Q Consensus       197 D~s~La~  203 (342)
                      ..+....
T Consensus       196 ~~~~~~~  202 (314)
T 2dvz_A          196 NLPSSMP  202 (314)
T ss_dssp             EHHHHHH
T ss_pred             CCHHHHH
T ss_conf             3211111


No 53 
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, membrane, transport protein; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=97.31  E-value=0.0013  Score=41.77  Aligned_cols=181  Identities=14%  Similarity=0.165  Sum_probs=104.8

Q ss_pred             HHHHHHHCCEEEEEEECCCCCCEEECCCCCEEE-EHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEE
Q ss_conf             689998579499987178988306889898801-5099999999996798220259981----43100267743962799
Q gi|254780170|r   26 ILGDIKKRGFLKCGINTGLVGFAEVKANGDWKG-FDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDIL  100 (342)
Q Consensus        26 tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~G-fDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil  100 (342)
                      -.++++.+-++|.+...  |       .|.+.| +--.+++.|.++-.|   +|++-|.    ...+.+.++++|.+|+.
T Consensus         7 ~~~~~~~~~t~~~a~~~--~-------~~~~~~~~~~~fa~~Vee~t~G---~I~i~p~g~Lg~~~e~~~~v~~G~id~~   74 (326)
T 3fxb_A            7 QFEKIEGRDTWRYAFEE--A-------MTDVQGVYAQKFKEEIEANSDH---EIQLFPYGTLGESADIMEQTQDGILQFV   74 (326)
T ss_dssp             --------CCCEEECSS--C-------TTSHHHHHHHHHHHHHHHSSSC---CCEEECTTSSCSHHHHHHHHHHTSCSEE
T ss_pred             HHHHHCCCCEEEEECCC--C-------CCCHHHHHHHHHHHHHHHHCCC---EEEEEECCCCCCHHHHHHHHHCCCCCEE
T ss_conf             03341625579996789--9-------9987899999999999976598---7999879836887999999976985289


Q ss_pred             EECCCCCCCCHHCCCCCCCCCCCC-------------------------------------CCEEEEEECCCCCCCHHHH
Q ss_conf             812432532011027843532234-------------------------------------4023463021134753641
Q gi|254780170|r  101 SRNTDWTLLREISLGLAFRPITYF-------------------------------------DGQGFIMHKKKGISSVSQL  143 (342)
Q Consensus       101 ~~~~T~T~~Rd~~~~v~Fs~~~~~-------------------------------------dgq~~lVrk~~~i~s~~dL  143 (342)
                      ....+......-...+ |..|+.+                                     .|...+. .+..|++++||
T Consensus        75 ~~~~~~~~~~~p~~~i-~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~g~~~~~-s~kpi~s~~Dl  152 (326)
T 3fxb_A           75 DQSPGFTGSLIPEAQV-FFVPYLLPTDQDHLARFFKESKAINDMFKPLYADQGLELLNMFPEGEVAMT-TKTPVTTCSDL  152 (326)
T ss_dssp             ECCHHHHTTTSGGGGG-GGSTTCSCSCHHHHHHHHHHCHHHHTTSHHHHHTTTEEEEEEEEEEEEEEE-ESSCCSSGGGS
T ss_pred             EECCCHHCCCCCHHHH-HCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEE-CCCCCCCHHHH
T ss_conf             7514001224614665-307645773099999985136999999999988619714322103624664-69899997997


Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC
Q ss_conf             78620343134269999999986299850787479899999987396029982504799999836780010025644423
Q gi|254780170|r  144 SGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISK  223 (342)
Q Consensus       144 ~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk  223 (342)
                      +|+||-+..+..    ..++++.-|.  +++.. ...|.+.+|++|.+|++.+-.+.+.+.+  +..-.+|.+... +..
T Consensus       153 kG~kiR~~~s~~----~~~~~~~~Ga--~pv~i-~~~Ev~~aLq~G~vDg~~~~~~~~~~~~--~~ev~~y~t~~~-~~~  222 (326)
T 3fxb_A          153 DEVKFRVMTNPL----LVESYKAFGA--TPTPL-PWGEVYGGLQTNVIQGQENPTFFLYSTK--IYEVTDYITYAG-HNN  222 (326)
T ss_dssp             TTCEEEECSCHH----HHHHHHHHTS--EEEEC-CGGGHHHHHHTTSCCEEEEEHHHHHHTT--GGGSCSEEEECC-CCE
T ss_pred             CCCCEECCCCCH----HHHHHHHCCC--CCCCC-CCCCHHHHHHCCCCCEEECCCHHHCCCC--CCCCCCEEEECC-CCC
T ss_conf             687120048606----8999997599--75256-5100447986688661322612212434--323034587346-423


Q ss_pred             CCEEEEC
Q ss_conf             7101000
Q gi|254780170|r  224 SPLAPAI  230 (342)
Q Consensus       224 EPlg~av  230 (342)
                      -+..+++
T Consensus       223 ~~~~~~~  229 (326)
T 3fxb_A          223 FTTAVMA  229 (326)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEE
T ss_conf             2001476


No 54 
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=97.26  E-value=0.0035  Score=39.05  Aligned_cols=175  Identities=13%  Similarity=0.098  Sum_probs=99.0

Q ss_pred             EEEEEEECCCCCCEEECCCCCEEE-EHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCC
Q ss_conf             499987178988306889898801-5099999999996798220259981----43100267743962799812432532
Q gi|254780170|r   35 FLKCGINTGLVGFAEVKANGDWKG-FDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLL  109 (342)
Q Consensus        35 ~L~vGv~~~~ppfs~~d~~G~~~G-fDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~  109 (342)
                      +||.+.  .+||       |.+.+ -...+++.|.++-.|. .+|++.+.    ...+.+.++++|.+|+...+...-..
T Consensus        10 tlk~~~--~~p~-------~~~~~~~~~~fa~~v~e~s~G~-v~i~v~~~g~Lg~~~e~~~~v~~G~vd~~~~~~~~~~~   79 (327)
T 2hpg_A           10 TLRFGH--VLAP-------GEPYHQAFLKWAKAVEEKTNGD-VRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGM   79 (327)
T ss_dssp             EEEEEC--CCST-------TSHHHHHHHHHHHHHHHHTTTS-EEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTT
T ss_pred             EEEEEC--CCCC-------CCHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf             999978--8899-------8989999999999999876992-99999668766887999999976997067324301212


Q ss_pred             CHHC--------------------------------------------CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCC
Q ss_conf             0110--------------------------------------------27843532234402346302113475364178
Q gi|254780170|r  110 REIS--------------------------------------------LGLAFRPITYFDGQGFIMHKKKGISSVSQLSG  145 (342)
Q Consensus       110 Rd~~--------------------------------------------~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G  145 (342)
                      ....                                            .++-+-..++..+..++.. +..|++++||+|
T Consensus        80 ~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~-~~pi~s~~DlkG  158 (327)
T 2hpg_A           80 YVKDIGVMNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRHFVT-NKPIRKPEDLNG  158 (327)
T ss_dssp             TSGGGGGGGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEE-SSCCSSGGGGTT
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEC-CCCCCCHHHHCC
T ss_conf             5666320234200466555888999999999864989999999998862984231212576056765-888899799779


Q ss_pred             CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCC
Q ss_conf             62034313426999999998629985078747989999998739602998250479999983678001002564442371
Q gi|254780170|r  146 ASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSP  225 (342)
Q Consensus       146 ~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEP  225 (342)
                      +||-+. |+..   ..++++.-|.  ++|.. ...|.+.+|++|.+|+..+-.+.+...+  +..--+|.+.+. ...-+
T Consensus       159 ~kiR~~-g~~~---~~~~~~~~Ga--~pv~~-~~~ev~~aLqtG~iDg~~~~~~~~~~~~--~~e~~~~~t~~~-~~~~~  228 (327)
T 2hpg_A          159 LRIRTP-GAPA---WQESIRSLGA--IPVAV-NFGEIYTAVQTRAVDGAELTYANVYNGG--LYEVLKYMSETG-HFLLI  228 (327)
T ss_dssp             CEEECC-SSHH---HHHHHHHHTS--EEECC-CGGGHHHHHHTTSCSEEEECHHHHHHTT--GGGTCCEEEEEE-EEEEE
T ss_pred             CEEEEC-CCHH---HHHHHHHCCC--CCCCC-CCCCHHHHHHCCCEEEEEECCCCCCCCC--CEEEECEEECCC-CCCCH
T ss_conf             859844-8747---8999997388--31046-7641667987586458972420001355--000204586289-75420


Q ss_pred             EEEEC
Q ss_conf             01000
Q gi|254780170|r  226 LAPAI  230 (342)
Q Consensus       226 lg~av  230 (342)
                      ...++
T Consensus       229 ~~~~~  233 (327)
T 2hpg_A          229 NFEIV  233 (327)
T ss_dssp             EEEEE
T ss_pred             HHHHH
T ss_conf             58871


No 55 
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=97.24  E-value=0.0014  Score=41.57  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=94.0

Q ss_pred             CCCEEE-EHHHHHHHHHHHHCCCCCEEEEEE----CCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCC---
Q ss_conf             898801-509999999999679822025998----143100267743962799812432532011027843532234---
Q gi|254780170|r   53 NGDWKG-FDVDFCRALSSAIFDDPSKIQYLP----LNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYF---  124 (342)
Q Consensus        53 ~G~~~G-fDVDl~raiAaal~gd~~kVe~v~----~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~---  124 (342)
                      .|.+.+ +--.+++.|.++-.|   +|++-|    ....+.+.++++|.+|+.....+....+.-...+ |..|+++   
T Consensus        11 ~g~~~~~~~~~fa~~v~e~t~G---~v~i~~~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~v-~~lP~~~~s~   86 (316)
T 2vpn_A           11 EGDVQDVFAQAFKGYVEDNSDH---TVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQI-FFIPYLMPTD   86 (316)
T ss_dssp             TTSHHHHHHHHHHHHHHHSSSC---EEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGG-GGSTTCSCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHCCC---EEEEEECCEECCHHHHHHHHHCCCCCEEEECHHHHHHHCHHHHH-HHCCHHHHHH
T ss_conf             9998899999999999986698---79999899127779999999779838898766665102512566-6162254669


Q ss_pred             ----------------------------------CCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf             ----------------------------------4023463021134753641786203431342699999999862998
Q gi|254780170|r  125 ----------------------------------DGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMK  170 (342)
Q Consensus       125 ----------------------------------dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~  170 (342)
                                                        .|...+. .+..|++++||+|+||-+..+.+.    .++++..|. 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~L~~~~~g~~~~~-t~~pi~s~~DLkG~kiR~~~~~~~----~~~~~~lGa-  160 (316)
T 2vpn_A           87 MDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPLL----AETYKAFGA-  160 (316)
T ss_dssp             HHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHHH----HHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEE-CCCCCCCHHHHCCCEEEECCCCHH----HHHHHHCCC-
T ss_conf             99999853005789999999998619677787147853553-698889978976880762488058----999997598-


Q ss_pred             CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECC
Q ss_conf             5078747989999998739602998250479999983678001002564442371010002
Q gi|254780170|r  171 YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAII  231 (342)
Q Consensus       171 ~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr  231 (342)
                       .++.. ...+.+.+|++|.+|+..+..+.+.+.  ++..--+|.+.+. +..-+..+++.
T Consensus       161 -~pv~~-p~~evy~aLq~G~iDg~~~~~~~~~~~--~~~ev~~y~~~~~-~~~~~~~~~~n  216 (316)
T 2vpn_A          161 -TPTPL-PWGEVYGGLQTGIIDGQENPIFWIESG--GLYEVSPNLTFTS-HGWFTTAMMAN  216 (316)
T ss_dssp             -EEEEC-CGGGHHHHHHHTSCSEEEEEHHHHHHT--TGGGTCCEEEECC-CCEEEEEEEEE
T ss_pred             -CCCCC-CCCCCCHHHHCCCEEEEECCCCCCCCC--CEEEEECCEECCC-CCCCHHHHHHH
T ss_conf             -43245-300123065358610475252100122--0011104413143-33433687743


No 56 
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic solute-binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=97.17  E-value=0.0012  Score=42.05  Aligned_cols=215  Identities=12%  Similarity=0.028  Sum_probs=111.1

Q ss_pred             HCCEEEEEEEC--CCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCC----EEEEEECC
Q ss_conf             57949998717--8988306889898801509999999999679822025998-14310026774396----27998124
Q gi|254780170|r   32 KRGFLKCGINT--GLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQ----IDILSRNT  104 (342)
Q Consensus        32 ~rG~L~vGv~~--~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~----vDil~~~~  104 (342)
                      ++.+|++|.-+  +..|+-.-.++|            +-++.+.|  .|+++. .+|.+...+|.+|.    +|......
T Consensus        34 Ek~~l~iG~iP~~d~aPl~VA~ekG------------fF~~~GLd--~V~l~~~~s~a~~~d~l~~G~~dg~lD~a~~la   99 (429)
T 2i49_A           34 ETANIKLGYIPIVEAAPLIIAQEKG------------FFAKYGMT--GVEVSKQANWASARDNVTIGSQGGGIDGGQWQM   99 (429)
T ss_dssp             SCSEEEEEECSSGGGHHHHHHHHTT------------HHHHTTCC--EEEEEECSSHHHHHHHHHHTGGGTSCSEEEECT
T ss_pred             CCCEEEEEEEECHHHHHHHHHHHCC------------HHHHCCCC--EEEEEECCCHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf             7746999987744369999999779------------48875997--588995587799999998142257621564154


Q ss_pred             CC----CCC-CHHCCCCCCCCC--CCCCCEEEEE--------------ECCCCCCCHHHHCCCCEEEE---ECCCHHHHH
Q ss_conf             32----532-011027843532--2344023463--------------02113475364178620343---134269999
Q gi|254780170|r  105 DW----TLL-REISLGLAFRPI--TYFDGQGFIM--------------HKKKGISSVSQLSGASICVQ---AGTTTELTL  160 (342)
Q Consensus       105 T~----T~~-Rd~~~~v~Fs~~--~~~dgq~~lV--------------rk~~~i~s~~dL~G~~I~v~---~GTT~e~~l  160 (342)
                      ..    +.. .....++.+..+  ....|+++.+              +.++.++++.+|+||++.+.   .+|+++..|
T Consensus       100 p~p~a~~~gl~~~~~~~p~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~i~~~~dl~Gk~~~i~~~~~~s~~~~~l  179 (429)
T 2i49_A          100 PMPHLITEGIITNGNKVPMYVLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHTFPNVNQDFWI  179 (429)
T ss_dssp             THHHHHHTTTTTTTCCCCEEEEEECCBCCEEEEECGGGTTTTCSSCCGGGHHHHHTHHHHHSSCCEEEESSTTSHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCCEEEEHHHHCCCCEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCHHHHHH
T ss_conf             30899887776237788957633230588617851212025744212450565531887259861026789985899999


Q ss_pred             HHHHHHCCCC----CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCC-CCCCE-EEECCCC
Q ss_conf             9999862998----507874798999999873960299825047999998367800100256-444-23710-1000277
Q gi|254780170|r  161 ADYFKAHNMK----YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DII-SKSPL-APAIIQG  233 (342)
Q Consensus       161 ~~~~~~~~~~----~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~i-skEPl-g~avr~g  233 (342)
                      ..++++.|++    ++++.. ...++..+|.+|++|+++.-.+-..  +......+ +.++. .-+ ..-|. ..+++++
T Consensus       180 ~~~L~~~Gldp~~DV~iv~~-~p~~~~~aL~~G~IDa~~v~eP~~~--~a~~~g~g-~~~~~~~di~~~~~~~vl~~~~~  255 (429)
T 2i49_A          180 RYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGTMDAFSTGDPWPY--RIVTENIG-YMAGLTAQIWPYHPEEYLAIRAD  255 (429)
T ss_dssp             HHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTCCCEEEEETTHHH--HHHHTTSC-EEEEEHHHHSTTCCCCEEEEEHH
T ss_pred             HHHHHHCCCCCCCEEEEEEC-CHHHHHHHHHCCCCCEEEECCHHHH--HHHHCCCC-EEEECHHHHCCCCCCEEEEECHH
T ss_conf             99999669987640698746-7889999996598457971644999--99961887-36511677468986527996399


Q ss_pred             C-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             7-579999887744331121233015208988
Q gi|254780170|r  234 D-TEWYNIVSWTHYAMVTAEELGITQKNINQV  264 (342)
Q Consensus       234 D-~~w~d~V~W~~~ali~Aee~git~~nv~~~  264 (342)
                      - .+=-++|+-.+.|++.|-++==...|-++.
T Consensus       256 ~~~~nPe~v~a~l~Al~~A~~w~~~~~n~~e~  287 (429)
T 2i49_A          256 WVDKNPKATKALLKGIMEAQQWIDDPKNRPEV  287 (429)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99768799999999999999998468899999


No 57 
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=97.10  E-value=0.0011  Score=42.24  Aligned_cols=85  Identities=11%  Similarity=0.074  Sum_probs=60.2

Q ss_pred             CCEEEEECCCHHH--HHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE-EECCHHHHHHHHHCCCCHHHCCCCCCCC
Q ss_conf             6203431342699--999999862998507874798999999873960299-8250479999983678001002564442
Q gi|254780170|r  146 ASICVQAGTTTEL--TLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY-TGDISALYALKLTNDRPSEHVILPDIIS  222 (342)
Q Consensus       146 ~~I~v~~GTT~e~--~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~-~~D~s~La~~~~~~~~p~~~~il~e~is  222 (342)
                      .+||...++-.+.  ..+++|++.|++++++.|.+..++.+||.+|++|+. ++..+.|.+....  ++-+.+++. ..+
T Consensus         5 i~iG~~~~~~~~~l~~~k~~~k~~Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~~~--~~~~l~~v~-~~~   81 (241)
T 1xs5_A            5 VGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQE--HNGDLVSVG-NVH   81 (241)
T ss_dssp             EEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHH--HTCCEEEEE-EEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHH--CCCCEEEEE-EEC
T ss_conf             99996069859999999999997498899999388177899997699767985578899998854--697389998-841


Q ss_pred             CCCEEEECCCC
Q ss_conf             37101000277
Q gi|254780170|r  223 KSPLAPAIIQG  233 (342)
Q Consensus       223 kEPlg~avr~g  233 (342)
                      .+|++++.+++
T Consensus        82 ~~~~~l~~~~~   92 (241)
T 1xs5_A           82 VEPLALYSRTY   92 (241)
T ss_dssp             ECCCEEECSSC
T ss_pred             CCCEEEEECCC
T ss_conf             46548883686


No 58 
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.10  E-value=0.0023  Score=40.20  Aligned_cols=145  Identities=10%  Similarity=0.112  Sum_probs=85.4

Q ss_pred             EEHHHHHHHHHHHH---CCCCCEEEEEECCCCCC-HHHHHC---CCEEEEEECCCCC--C--CCHHCC-C-CCCCCC--C
Q ss_conf             15099999999996---79822025998143100-267743---9627998124325--3--201102-7-843532--2
Q gi|254780170|r   58 GFDVDFCRALSSAI---FDDPSKIQYLPLNAKER-FLALQS---KQIDILSRNTDWT--L--LREISL-G-LAFRPI--T  122 (342)
Q Consensus        58 GfDVDl~raiAaal---~gd~~kVe~v~~~~~~r-f~aL~s---G~vDil~~~~T~T--~--~Rd~~~-~-v~Fs~~--~  122 (342)
                      |.|+ +||.+|..+   +|.+.-|+.+|-..... ...+..   .-..+++.+.+..  .  .++... . -+|.+.  .
T Consensus        21 g~D~-~aR~~a~~l~~~lg~~vvV~N~pGagG~~g~~~~~~~~~dg~t~l~~~~~~~~~~~~~~~~~~~~~~d~~~v~~~   99 (301)
T 2qpq_A           21 GTDM-LARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKKDFAAVINV   99 (301)
T ss_dssp             HHHH-HHHHHHHHHHHGGGSCEEEEECCTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSCTTTTEEEEEEE
T ss_pred             HHHH-HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHEEEHHHCCCCCCCHHHHHHEEEEE
T ss_conf             8999-999999999998799879996799611999999985688998257723312341755088988826642012331


Q ss_pred             CCCCEEEEEECCCCCCCHHHHC-------C-CCEEEE-ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE
Q ss_conf             3440234630211347536417-------8-620343-134269999999986299850787479899999987396029
Q gi|254780170|r  123 YFDGQGFIMHKKKGISSVSQLS-------G-ASICVQ-AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA  193 (342)
Q Consensus       123 ~~dgq~~lVrk~~~i~s~~dL~-------G-~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA  193 (342)
                      ..+...++|++++++++++||-       | .+++.. .|+........+.+..+++++.|.|++..+++.++..|++|+
T Consensus       100 ~~~~~~lvv~~ds~~~t~~el~~~ak~~p~~~~~g~~g~g~~~~~~~~~~~~~~g~~~~~Vpy~G~~~~~~all~G~vd~  179 (301)
T 2qpq_A          100 AYVPSVFVVPAGSKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGL  179 (301)
T ss_dssp             EEEEEEEEEETTCSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSC
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCEEEE
T ss_conf             35656999737777440267777643103234251378987999999999861456623661178588888875584455


Q ss_pred             EEECCHHHHH
Q ss_conf             9825047999
Q gi|254780170|r  194 YTGDISALYA  203 (342)
Q Consensus       194 ~~~D~s~La~  203 (342)
                      .+...+....
T Consensus       180 ~~~~~~~~~~  189 (301)
T 2qpq_A          180 AVVTASSAIP  189 (301)
T ss_dssp             EEEEHHHHHH
T ss_pred             EECCHHHHHH
T ss_conf             5346787664


No 59 
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protein structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=96.68  E-value=0.0043  Score=38.53  Aligned_cols=167  Identities=13%  Similarity=0.130  Sum_probs=101.0

Q ss_pred             EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC----CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE
Q ss_conf             0259981431002677439627998124325320110----278435322344023463021134753641786203431
Q gi|254780170|r   77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS----LGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA  152 (342)
Q Consensus        77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~----~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~  152 (342)
                      .+++.-+-.++.-..+..|.+|+.+.+.-|-.|....    ..+.|...    .-.+.++.++.+ +..||+|++|+   
T Consensus        62 ~i~v~~~R~~DIp~~V~~G~~DlGItG~D~l~E~~~~v~~~~~LgfG~c----rL~vAvP~~~~~-~~~dl~~~rIA---  133 (304)
T 1nh8_A           62 NVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSS----SFRYAAPAGRNW-TTADLAGMRIA---  133 (304)
T ss_dssp             TEEEEEECGGGHHHHHHHSSCSEEEEEHHHHHHHTCCEEEEEECSCCCE----EEEEEEETTSCC-CGGGGTTCEEE---
T ss_pred             CEEEEEECHHHHHHHHHCCCCCEEECCHHHHHCCCCCCCHHHHCCCCCE----EEEEEEECCCCC-CHHHHCCCEEE---
T ss_conf             8799998889999999769987623214566417854451433598863----589996068877-83672698999---


Q ss_pred             CCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCC-CCCCEEEECC
Q ss_conf             342699999999862998507874798999999873960299825047999998367800100256444-2371010002
Q gi|254780170|r  153 GTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDII-SKSPLAPAII  231 (342)
Q Consensus       153 GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~i-skEPlg~avr  231 (342)
                       |.+....++||.+++++++++......|..  -..|-+|+++.=.+.=..++..     ..++..+.+ |.+.  ..+.
T Consensus       134 -TkYp~ltr~yf~~~gi~~~iv~~~GavE~a--P~~G~AD~IvDivsTG~TLr~N-----gLk~i~~il~sS~a--lii~  203 (304)
T 1nh8_A          134 -TAYPNLVRKDLATKGIEATVIRLDGAVEIS--VQLGVADAIADVVGSGRTLSQH-----DLVAFGEPLCDSEA--VLIE  203 (304)
T ss_dssp             -ESCHHHHHHHHHHHTCCCEEEECSSCCTHH--HHTTSCSEEEEEESSSHHHHHT-----TEEEEEEEEEEECE--EEEE
T ss_pred             -ECCHHHHHHHHHHCCCEEEEEECCCCCEEC--CCCCCEEEEEEECCCHHHHHHC-----CCEECCEEHHHHHH--HEEE
T ss_conf             -716258877798679826999758980652--5788030898752667889987-----99875013101255--6180


Q ss_pred             CC---CHH---HHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             77---757---9999887744331121233015208
Q gi|254780170|r  232 QG---DTE---WYNIVSWTHYAMVTAEELGITQKNI  261 (342)
Q Consensus       232 ~g---D~~---w~d~V~W~~~ali~Aee~git~~nv  261 (342)
                      +.   |++   ..+.+---+.+-+.|.++=.-..|+
T Consensus       204 ~~~~~~~~k~~~i~~l~~ri~gvl~A~~~~~v~~N~  239 (304)
T 1nh8_A          204 RAGTDGQDQTEARDQLVARVQGVVFGQQYLMLDYDC  239 (304)
T ss_dssp             EC--------CHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEC
T ss_conf             544688658999999999999999865277889547


No 60 
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=96.53  E-value=0.0071  Score=37.13  Aligned_cols=132  Identities=14%  Similarity=0.162  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH-------HCCCCCCCCCCCCC-CEEEEEEC
Q ss_conf             99999999967982202599814310026774396279981243253201-------10278435322344-02346302
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE-------ISLGLAFRPITYFD-GQGFIMHK  133 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd-------~~~~v~Fs~~~~~d-gq~~lVrk  133 (342)
                      .+.+.+-.++|   -+|+.++.+....+.+|.+|+||+....  |.+...       ....+.-..+.+.. .+++.|++
T Consensus        24 ~i~~~vLe~~G---y~Ve~~~~~~~~~~~al~~GdID~~~e~--W~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~   98 (298)
T 2rin_A           24 ATATTILEALG---YETDVKVLSVPVTYTSLKNKDIDVFLGN--WMPTMEADIAPYREDKSVETVRENLAGAKYTLATNA   98 (298)
T ss_dssp             HHHHHHHHHHT---CEEEEECCCHHHHHHHHHHTSCCEEEEE--EETTTHHHHHHHHTTTSEEEEEEEEEEEEEEEEEEH
T ss_pred             HHHHHHHHHCC---CCEEEEECCHHHHHHHHHCCCCEEEEEC--CCCCCHHHHHHHHHHCCCEECCCCCCCCEEEEEECC
T ss_conf             99999999869---9248986870999999987998088404--664001667998861453111444568615887530


Q ss_pred             C---CCCCCHHHHC-------CCCEEEEECCCHHHHHHHHHHHCCCCC--CEEEECCHH----HHHHHHHCCCEEEEEEC
Q ss_conf             1---1347536417-------862034313426999999998629985--078747989----99999873960299825
Q gi|254780170|r  134 K---KGISSVSQLS-------GASICVQAGTTTELTLADYFKAHNMKY--HPIVFERVE----EIDAAYRAHRCDAYTGD  197 (342)
Q Consensus       134 ~---~~i~s~~dL~-------G~~I~v~~GTT~e~~l~~~~~~~~~~~--~~v~~~~~~----~a~~al~~Gr~DA~~~D  197 (342)
                      .   .+|++++||.       +..++...|..............++..  ..+...+..    +...++.+|+++++..=
T Consensus        99 ~~a~~~i~sisDL~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~a~l~~A~~~~~~~v~~~w  178 (298)
T 2rin_A           99 KGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGMLAQVARAEKSGDPIVFLGW  178 (298)
T ss_dssp             HHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEECCCHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             44442767477776535523774672256422243314566650268876542046467799999999846885799826


Q ss_pred             C
Q ss_conf             0
Q gi|254780170|r  198 I  198 (342)
Q Consensus       198 ~  198 (342)
                      .
T Consensus       179 ~  179 (298)
T 2rin_A          179 E  179 (298)
T ss_dssp             E
T ss_pred             C
T ss_conf             8


No 61 
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=96.48  E-value=0.0047  Score=38.28  Aligned_cols=86  Identities=9%  Similarity=0.039  Sum_probs=59.8

Q ss_pred             CCCCEEEEECCCHHHH---HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCCHHHCCCCC
Q ss_conf             7862034313426999---9999986299850787479899999987396029-98250479999983678001002564
Q gi|254780170|r  144 SGASICVQAGTTTELT---LADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA-YTGDISALYALKLTNDRPSEHVILPD  219 (342)
Q Consensus       144 ~G~~I~v~~GTT~e~~---l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA-~~~D~s~La~~~~~~~~p~~~~il~e  219 (342)
                      .-.+|++..|.-++..   ++..+++.|++++++.|.+..+...||.+|++|+ +....+-|......  +..+.+++..
T Consensus        23 ~~i~ig~~~~~~~~~~~~~v~~~~k~~Gi~Ve~v~f~d~~~~n~AL~~G~iD~n~~q~~p~l~~~~~~--~g~~l~~v~~  100 (275)
T 3gxa_A           23 KEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKE--HNLDITEVFQ  100 (275)
T ss_dssp             CEEEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHH--HTCCEEEEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEECCCCHHHHHHHHHH--CCCCEEEEEE
T ss_conf             52899960698799999998999996598799999578335789986699554314457889999997--7996799856


Q ss_pred             CCCCCCEEEECCC
Q ss_conf             4423710100027
Q gi|254780170|r  220 IISKSPLAPAIIQ  232 (342)
Q Consensus       220 ~iskEPlg~avr~  232 (342)
                       ...+|+|...++
T Consensus       101 -~~~~~~glys~k  112 (275)
T 3gxa_A          101 -VPTAPLGLYPGK  112 (275)
T ss_dssp             -CCBCCCEEEESS
T ss_pred             -EECCCEEEEECC
T ss_conf             -311550666326


No 62 
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, cytoplasm, histidine, magnesium; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=96.47  E-value=0.0046  Score=38.36  Aligned_cols=182  Identities=15%  Similarity=0.096  Sum_probs=110.8

Q ss_pred             EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC----CCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEE
Q ss_conf             0259981431002677439627998124325320110----278435322344023463021134753641-78620343
Q gi|254780170|r   77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS----LGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQ  151 (342)
Q Consensus        77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~----~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~  151 (342)
                      .+++.-+-.++.-..+..|.+|+.+.+.-|-.|....    +.+.|...    .-.+.++++..+.+++|| .|++|+  
T Consensus        46 ~i~~~~~R~~DIp~~V~~G~~DlGItG~D~l~E~~~~v~~l~dLgfG~c----rlvvAvP~~~~~~~~~dl~~~~rIA--  119 (289)
T 2vd3_A           46 QIEVMFSRAADIPEFVADGAADLGITGYDLIVERGSDVEILEDLKYGRA----SLVLAAPEDSTIRGPEDIPRGAVIA--  119 (289)
T ss_dssp             TEEEEEECTTTHHHHHHHTSSSEEEEEHHHHHHHTCCCEEEEECSCSCE----EEEEEEETTSSCCSGGGCCTTCEEE--
T ss_pred             CEEEEEECHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCEEEECCCCCCE----EEEEEECCCCCCCCHHHHCCCCEEE--
T ss_conf             8799998889999999859866135430443340267157102487767----9999952766547876833584898--


Q ss_pred             ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECC
Q ss_conf             13426999999998629985078747989999998739602998250479999983678001002564442371010002
Q gi|254780170|r  152 AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAII  231 (342)
Q Consensus       152 ~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr  231 (342)
                        |.+....++||.++|++++++......|..  -.-|-+|+++.=.+.=..++..     ..+++.+.+..+..=++=+
T Consensus       120 --TkYp~it~~~~~~~gi~~~iv~l~GavE~a--P~lG~AD~IvDivsTG~TLr~N-----gL~~i~~il~ssa~LI~n~  190 (289)
T 2vd3_A          120 --TEFPGITENYLREHGIDAEVVELTGSTEIA--PFIGVADLITDLSSTGTTLRMN-----HLRVIDTILESSVKLIANR  190 (289)
T ss_dssp             --ESCHHHHHHHHHHTTCCCEEEECSSCGGGT--TTTTSCSEEEEEESSTHHHHHT-----TEEEEEEEEEECEEEEECH
T ss_pred             --EEHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCEEEEECCCHHHHHHC-----CCEECCCEEHEEHHHEECC
T ss_conf             --514669999999819537999657875468--7878441768861788889987-----6987402000136231656


Q ss_pred             C---CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             7---775799998877443311212330152089886226717788762
Q gi|254780170|r  232 Q---GDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL  277 (342)
Q Consensus       232 ~---gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l  277 (342)
                      +   ...+..+..---+.+.+.|+++-.-.-|+.    .+.-.++..+|
T Consensus       191 ~s~~~k~~~i~~l~~rl~~vl~a~~~~~i~~n~p----~~~l~~v~~~l  235 (289)
T 2vd3_A          191 ESYATKSGIIEELRTGIRGVIDAEGKRLVMLNID----RKNLDRVRALM  235 (289)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHTTTEEEEEEEEE----GGGHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECC----HHHHHHHHHHC
T ss_conf             4432348999999999853774530899999687----76699999857


No 63 
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR structural genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli K12} PDB: 3hfu_A
Probab=96.37  E-value=0.057  Score=31.43  Aligned_cols=188  Identities=9%  Similarity=0.065  Sum_probs=115.8

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
                      .+|+|++|+...+..           .+=.++.+.+.++-  ....+++...+..+....|.+|++|+.+......    
T Consensus        28 ~~g~l~Ig~~~~~~~-----------~~l~~~l~~f~~~~--P~i~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~~----   90 (238)
T 2hxr_A           28 TRGSLRIAVTPTFTS-----------YFIGPLMADFYARY--PSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVH----   90 (238)
T ss_dssp             ---CEEEEECHHHHT-----------TTHHHHHHHHHHHC--TTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCC----
T ss_pred             CCEEEEEEEEHHHHH-----------HHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHCCCCHHHHHCCCCC----
T ss_conf             842899995378999-----------99999999999988--9988997328879999999869830012025544----


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf             1027843532234402346302113-----475364178620343-13426999999998629985078-7479899999
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA  184 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~  184 (342)
                       ..++.+. +.+.+...++++++..     .-+++||.+....+. .++.....+.++++..+...+++ .+++...+..
T Consensus        91 -~~~~~~~-~l~~~~~~~~~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (238)
T 2hxr_A           91 -SPELEAI-PLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLE  168 (238)
T ss_dssp             -CTTEEEE-EEEEEEEEEEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHH
T ss_pred             -CCCHHHH-HHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHH
T ss_conf             -3104333-34554223213200466540358799981396898489985799999999976998752123687799999


Q ss_pred             HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHHHHHH
Q ss_conf             9873960299825047999998367800100256444237101000277757---99998877
Q gi|254780170|r  185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNIVSWT  244 (342)
Q Consensus       185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~V~W~  244 (342)
                      ...+|..=++....  ++ .  ...+-....+.+..+ .-+++.+.|++...   -+.+++|.
T Consensus       169 ~v~~g~gi~~~p~~--~~-~--~~~~~~~~~~~~~~~-~~~~~li~~~~~~~s~~~~~fi~~~  225 (238)
T 2hxr_A          169 LIRRTSLSTLLPAA--IA-T--QHDGLKAISLAPPLL-ERTAVLLRRKNSWQTAAAKAFLHMA  225 (238)
T ss_dssp             HHHHSSCBEEEETH--HH-H--HCTTEEEEEESSCSC-EEEEEEEEETTSCCCHHHHHHHHHH
T ss_pred             HHHHCCEEEEEHHH--HH-H--HCCCCEEEECCCCCC-EEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf             99939979970299--86-0--378933997889986-2499999989597899999999999


No 64 
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=96.31  E-value=0.0086  Score=36.60  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=55.6

Q ss_pred             CCCEEEEECCCHH-HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE-EECCHHHHHHHHHCCCCHHHCCCCCCCC
Q ss_conf             8620343134269-9999999862998507874798999999873960299-8250479999983678001002564442
Q gi|254780170|r  145 GASICVQAGTTTE-LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY-TGDISALYALKLTNDRPSEHVILPDIIS  222 (342)
Q Consensus       145 G~~I~v~~GTT~e-~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~-~~D~s~La~~~~~~~~p~~~~il~e~is  222 (342)
                      -.+||++...... ..+++.+++.|++++++.|.+..+..+||.+|++|+- +.+.+.|........ ..+.+++. ...
T Consensus        40 ~i~IG~~~~~~~~~~~~~~~~kk~Gl~Ve~~~F~d~~~~~~AL~~G~ID~~~~~~~p~l~~~~k~~~-g~~l~~v~-~~~  117 (295)
T 1p99_A           40 KVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHK-GTKISALS-TTV  117 (295)
T ss_dssp             CEEEEESSSCCHHHHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHHHCT-TCCEEEEE-EEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEECCCHHHHHHHHHHCC-CCEEEEEC-CCC
T ss_conf             4999967983899999999999759889999817827799999759967675178999999997679-95599944-521


Q ss_pred             CCCEEEECCC
Q ss_conf             3710100027
Q gi|254780170|r  223 KSPLAPAIIQ  232 (342)
Q Consensus       223 kEPlg~avr~  232 (342)
                      .+|++...++
T Consensus       118 ~~~~~~~~~~  127 (295)
T 1p99_A          118 LAPLGIYSDK  127 (295)
T ss_dssp             ECCCEEECSS
T ss_pred             CCCCCCCCCC
T ss_conf             1231012656


No 65 
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=96.22  E-value=0.068  Score=30.92  Aligned_cols=180  Identities=10%  Similarity=-0.008  Sum_probs=108.4

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      +|.+++|+......           .+-.++.+.+.+.-  ...++++...+..+.+..|.+|++|+.+.......    
T Consensus        94 ~~~~~i~~~~~~~~-----------~~l~~~l~~~~~~~--P~i~l~~~~~~~~~~~~~L~~~~~Di~i~~~~~~~----  156 (306)
T 3fzv_A           94 AGQIDIGCFETVAP-----------LYLPGLIAGFRQAY--PGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLD----  156 (306)
T ss_dssp             CEEEEEEEEGGGHH-----------HHHHHHHHHHHHHC--TTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCC----
T ss_pred             CCEEEEEEEHHHHH-----------HHHHHHHHHHHHHC--CCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCCC----
T ss_conf             75268885047899-----------99899999998538--97499999787799999998599736888357899----


Q ss_pred             CCCCCCCCCCCCC-CEEEEEECCCC-----CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHH
Q ss_conf             0278435322344-02346302113-----4753641786203431342699999999862998507-874798999999
Q gi|254780170|r  113 SLGLAFRPITYFD-GQGFIMHKKKG-----ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAA  185 (342)
Q Consensus       113 ~~~v~Fs~~~~~d-gq~~lVrk~~~-----i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~a  185 (342)
                       ...... +.+.. -..+.++++..     ..+++||.+..+....+......+.+++...+..... ..+++......+
T Consensus       157 -~~~~~~-~l~~~~~~~v~~~~~~~l~~~~~~~~~dl~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  234 (306)
T 3fzv_A          157 -STIETE-PLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGM  234 (306)
T ss_dssp             -TTEEEE-ESSCCBCCEEEEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHH
T ss_pred             -CCCEEE-EECCCCEEEEEECCCHHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             -872589-921462689996264265337889999981799898459876510455676538775425467888999999


Q ss_pred             HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf             873960299825047999998367800100256--44423710100027775
Q gi|254780170|r  186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT  235 (342)
Q Consensus       186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~  235 (342)
                      +..|..=++..+.....    ...+....+++|  +......+.++.+++..
T Consensus       235 v~~g~gi~~lp~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~  282 (306)
T 3fzv_A          235 VGQGFGFSLLVTRPHSE----CTYDGKKVVMVDLAEPVSTSGLAAAWLKRAQ  282 (306)
T ss_dssp             HHTTSCBEEECCCCSCS----BCTTSCBEEEEEESSCCCBCCCEEEEETTSC
T ss_pred             HHCCCEEEEEEHHHHHH----HHHCCCCEEEEECCCCCCCCEEEEEEECCCC
T ss_conf             98099499942587889----8756997799867788764279999989898


No 66 
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=96.11  E-value=0.039  Score=32.43  Aligned_cols=120  Identities=11%  Similarity=0.128  Sum_probs=72.2

Q ss_pred             CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH------HCCCCCCCCCCCCC-CEEEEEECCCCCCCHHHHCCCCE
Q ss_conf             202599814310026774396279981243253201------10278435322344-02346302113475364178620
Q gi|254780170|r   76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE------ISLGLAFRPITYFD-GQGFIMHKKKGISSVSQLSGASI  148 (342)
Q Consensus        76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd------~~~~v~Fs~~~~~d-gq~~lVrk~~~i~s~~dL~G~~I  148 (342)
                      .+||.+..+....+++|.+|+||+....  |.+...      ...++.-..+.+.. .+++.|++..++++++||++..-
T Consensus        30 y~Ve~~~~~~~~~~~al~~G~iDi~~e~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vp~~~~i~si~dl~~~~~  107 (256)
T 3l6g_A           30 FDVKTTALDNAVAWQTVANGQADGMVSA--WLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQAN  107 (256)
T ss_dssp             EEEEEEECCHHHHHHHHHTTSSSEEEEE--EETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEETTSCCCBGGGCSSGGG
T ss_pred             CCEEEEECCCHHHHHHHHCCCCCEEEEC--CCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             9459987884899999987998298511--43245566676326765880224678626898755124025778765664


Q ss_pred             EEEECCCHH----HHHHHHHHHCCC--CCCEEEECCHH----HHHHHHHCCCEEEEEECC
Q ss_conf             343134269----999999986299--85078747989----999998739602998250
Q gi|254780170|r  149 CVQAGTTTE----LTLADYFKAHNM--KYHPIVFERVE----EIDAAYRAHRCDAYTGDI  198 (342)
Q Consensus       149 ~v~~GTT~e----~~l~~~~~~~~~--~~~~v~~~~~~----~a~~al~~Gr~DA~~~D~  198 (342)
                      ....|....    ......+...+.  .++++ ..+..    +...|+.+|+++.+..-.
T Consensus       108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~A~~~~~~~v~~~w~  166 (256)
T 3l6g_A          108 KTITGIEPGAGVMAASEKTLNSYDNLKDWKLV-PSSSGAMTVALGEAIKQHKDIVITGWS  166 (256)
T ss_dssp             GEEECCCTTCHHHHHHHHHHTTCGGGTTCEEE-CCCHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             HCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEE-CCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             04436786544241137677540345443120-465077899999997647977999506


No 67 
>2b6d_A Lactotransferrin; complex, drugs, lactoferrin; HET: NAG MAN BMA DIF; 1.40A {Bos taurus} SCOP: c.94.1.2 PDB: 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A* 2dwa_A* 2dwh_A* 2dwi_A* 2dwj_A* 2dxr_A* 2dxy_A* 2dyx_A* 2e0s_A* 2e1s_A* 2fa7_A* 2g5j_A* 2g93_A* 2h4i_A* ...
Probab=95.92  E-value=0.0079  Score=36.86  Aligned_cols=175  Identities=10%  Similarity=0.027  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECC--CCCCCCHHCCCCCCC----------------CCC
Q ss_conf             9999999996798220259981-431002677439627998124--325320110278435----------------322
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNT--DWTLLREISLGLAFR----------------PIT  122 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~--T~T~~Rd~~~~v~Fs----------------~~~  122 (342)
                      +=|..+++++.   .+|+.+.. +..+-+.+|.+|++|+++-.-  .++..+.....+-+.                ...
T Consensus        15 ~KC~~ls~~~~---~~v~Cv~~~s~~~Ci~~I~~g~ADi~~ld~~~~~~A~k~~l~~vvae~~~~~~~~~~~~~~~~~~~   91 (345)
T 2b6d_A           15 KKCQQWSQQSG---QNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEG   91 (345)
T ss_dssp             HHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHHTTCEEEEEEEECCSSSCSSCGGGSCCCC
T ss_pred             HHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             99999999639---986999679999999999769987899781782222033895322123236876545300246771


Q ss_pred             CCCCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHHHHHH-HHH-HHCCCCC--------------------C-------
Q ss_conf             344023463021134753641786203431-342699999-999-8629985--------------------0-------
Q gi|254780170|r  123 YFDGQGFIMHKKKGISSVSQLSGASICVQA-GTTTELTLA-DYF-KAHNMKY--------------------H-------  172 (342)
Q Consensus       123 ~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e~~l~-~~~-~~~~~~~--------------------~-------  172 (342)
                      ||  ...+||+++.+.++.||.||+.|-.- ++|.--++- .++ ....+..                    +       
T Consensus        92 y~--avaVvkk~s~~~~~~dLkGKksChtg~~~taGw~iP~~~Li~~~~~~~~~~fF~~sC~pg~~~~~~lc~lc~~~~~  169 (345)
T 2b6d_A           92 YL--AVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQ  169 (345)
T ss_dssp             EE--EEEEEETTSTTCCGGGCTTSEEEESCTTCTTTTHHHHHHHHHHHTCSCTTSSSSEEECTTSCTTSGGGTTCCCSTT
T ss_pred             EE--EEEEEECCCCCCCHHHHCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf             58--9998616888777777079740325888664533334432368865553322134316475673023444068876


Q ss_pred             ---------EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH--------HCCCCHHHCCCCC-------------CCC
Q ss_conf             ---------7874798999999873960299825047999998--------3678001002564-------------442
Q gi|254780170|r  173 ---------PIVFERVEEIDAAYRAHRCDAYTGDISALYALKL--------TNDRPSEHVILPD-------------IIS  222 (342)
Q Consensus       173 ---------~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~--------~~~~p~~~~il~e-------------~is  222 (342)
                               .-.|-.+.-|++=|..|.-|.-....+.+.-.-.        ..-++++|.+|-.             .+.
T Consensus       170 ~~~~C~~~~~~~Y~G~~GAlrCL~eg~GDVAFv~~~~v~~~~~~~~~~~~~~~~~~~dy~lLC~dG~~~~~~~~~~C~l~  249 (345)
T 2b6d_A          170 GLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLA  249 (345)
T ss_dssp             SCSTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHHTSTTSCCCTTTTTCCGGGEEEECTTSCEEEGGGGGGSCSE
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCHHHHCCCCCHHEECCCCCCCCCCCCCCCCCC
T ss_conf             55556799888775603578998718984589853408875388763210110475433106889980467888766550


Q ss_pred             CCCEEEECCCCCHHHHHHHHH
Q ss_conf             371010002777579999887
Q gi|254780170|r  223 KSPLAPAIIQGDTEWYNIVSW  243 (342)
Q Consensus       223 kEPlg~avr~gD~~w~d~V~W  243 (342)
                      +.|-..+|-+.|  +.+.|..
T Consensus       250 ~~P~~~vv~~~~--~~~~v~~  268 (345)
T 2b6d_A          250 VAPNHAVVSRSD--RAAHVEQ  268 (345)
T ss_dssp             EECCCEEEECHH--HHHHHHH
T ss_pred             CCCCCEEEECCC--HHHHHHH
T ss_conf             068823796674--1689999


No 68 
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=95.74  E-value=0.11  Score=29.66  Aligned_cols=128  Identities=14%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHCCC--CCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC----
Q ss_conf             9999999996798--2202599814310026774396279981243253201102784353223440234630211----
Q gi|254780170|r   62 DFCRALSSAIFDD--PSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK----  135 (342)
Q Consensus        62 Dl~raiAaal~gd--~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~----  135 (342)
                      .+.++++++--..  ..+|++....+..-+..|.+|++|+.+..-.++.+ +....+. ..+.-+++..++|.++.    
T Consensus        40 ~l~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~s~~~~~~-e~~~~~~-~~~ia~~~~~ivv~~~n~~~~  117 (290)
T 1twy_A           40 RIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTES-EAQNTLH-TFTLAFDGLAIVVNQANPVTN  117 (290)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESSCCCTT-TCCTTCE-EEEEEEEEEEEEECTTCCCCE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHH-HHHCCCE-EEEEEECCEEEEECCCCCCCC
T ss_conf             99999999999888895799971686799999982686412255400134-6634505-677886025764057785234


Q ss_pred             ------------CCCCHHHHCC--CCEEEE---ECCCHHHHHHHHHHH---------CCCCCCEEEECCHHHHHHHHHCC
Q ss_conf             ------------3475364178--620343---134269999999986---------29985078747989999998739
Q gi|254780170|r  136 ------------GISSVSQLSG--ASICVQ---AGTTTELTLADYFKA---------HNMKYHPIVFERVEEIDAAYRAH  189 (342)
Q Consensus       136 ------------~i~s~~dL~G--~~I~v~---~GTT~e~~l~~~~~~---------~~~~~~~v~~~~~~~a~~al~~G  189 (342)
                                  .|+.|+|+.|  ..|.+.   .+|.+.....++...         ....-.....++.......+..+
T Consensus       118 ls~~~L~~i~~g~it~W~~~~~~~~~i~~~~r~~~Sgt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~  197 (290)
T 1twy_A          118 LTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHN  197 (290)
T ss_dssp             ECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCHHHHHHHHHHTCEEEETTEEEECSCTTSEEESSHHHHHHHHHHC
T ss_pred             CCHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCC
T ss_conf             58989856442876753104899884178527999727999999961044212121023577127943848999999648


Q ss_pred             CE
Q ss_conf             60
Q gi|254780170|r  190 RC  191 (342)
Q Consensus       190 r~  191 (342)
                      .-
T Consensus       198 ~~  199 (290)
T 1twy_A          198 TQ  199 (290)
T ss_dssp             TT
T ss_pred             CC
T ss_conf             88


No 69 
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.54  E-value=0.13  Score=29.09  Aligned_cols=198  Identities=12%  Similarity=0.071  Sum_probs=115.5

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      +|.|++|+......+           +=..+.+.+.+.-  ...++++...+..+.+..|.+|++|+.+.....  .   
T Consensus         3 ~G~lrIG~~~s~~~~-----------~lp~~l~~f~~~~--P~v~l~i~~~~~~~l~~~l~~g~~D~~i~~~~~--~---   64 (219)
T 3jv9_A            3 EGAFKLGLIFTVAPY-----------LLPKLIVSLRRTA--PKMPLMLEENYTHTLTESLKRGDVDAIIVAEPF--Q---   64 (219)
T ss_dssp             CCCEEEEEETTTHHH-----------HHHHHHHHHHHHS--TTCCEEEEEECHHHHHHHHHHTSSSEEEEESSC--C---
T ss_pred             CEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHCCCEEEEEECCCC--C---
T ss_conf             028999977788999-----------9999999999988--892899998873777765616958887502687--7---


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCC-----C-CEEEECCHH
Q ss_conf             02784353223440234630211-----347536417862-03431342699999999862998-----5-078747989
Q gi|254780170|r  113 SLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMK-----Y-HPIVFERVE  180 (342)
Q Consensus       113 ~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~-----~-~~v~~~~~~  180 (342)
                      ..++.+. +.+.+...++++++.     ...+.+++.... +....+......+...+...+.+     . .....++..
T Consensus        65 ~~~~~~~-~l~~e~~~lv~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (219)
T 3jv9_A           65 EPGIVTE-PLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSIN  143 (219)
T ss_dssp             CTTEEEE-EEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHH
T ss_pred             CCCEEEE-EECCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCHH
T ss_conf             7874898-503310899975664212245421133322774446888526789999999758985313455626778799


Q ss_pred             HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CC-CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999873960299825047999998367800100256--44-4237101000277757999988774433112123301
Q gi|254780170|r  181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DI-ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGIT  257 (342)
Q Consensus       181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~-iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git  257 (342)
                      ...+...+|-.=++.-... +   +  ..+.....++|  +. .+. .+..+.|++-. -...+++.+..+.+++-.||+
T Consensus       144 ~~~~lv~~G~Gi~~lP~~~-~---~--~~~~~~l~~~pl~~~~~~~-~i~lv~~k~~~-~~~~~~~~~~~l~~~~~~~~~  215 (219)
T 3jv9_A          144 TIRHMVASGLAISVLPATA-L---T--ENDHMLFSIIPFEGTPPSR-RVVLAYRRNFV-RPKALSAMKAAIMQSQLHGVS  215 (219)
T ss_dssp             HHHHHHHHTSCEEEEEGGG-C---C--TTCTTTEEEECCSSSCCEE-EEEEEEETTCS-CHHHHHHHHHHHHTSCCSSCE
T ss_pred             HHHHHHHCCCEEEECCHHH-H---H--HCCCCCEEEEECCCCCCEE-EEEEEEECCCC-CCHHHHHHHHHHHHHCCCCCC
T ss_conf             9999998599899871889-7---1--1427998999888998545-99999989498-899999999999973556765


No 70 
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.46  E-value=0.082  Score=30.41  Aligned_cols=191  Identities=8%  Similarity=0.073  Sum_probs=109.6

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      +|.|++|+.+....+           +=.++.+++.+.- - ..++++....+.+.+..|.+|++|+.+.......    
T Consensus        10 ~G~l~ig~~~s~~~~-----------~lp~~l~~f~~~~-P-~v~l~l~~~~~~~~~~~L~~g~iD~~i~~~~~~~----   72 (232)
T 3ho7_A           10 TGRLNIAVLPTIAPY-----------LLPRVFPIWKKEL-A-GLEIHVSEMQTSRCLASLLSGEIDMAIIASKAET----   72 (232)
T ss_dssp             CEEEEEEECTTTHHH-----------HHHHHHHHHHHHS-T-TEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCC----
T ss_pred             EEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC-C-CCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCC----
T ss_conf             279999943778999-----------9999999999988-8-9689999898289999997798428986347655----


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCC-CCE-EEECCHHHHHH
Q ss_conf             02784353223440234630211-----347536417862034-31342699999999862998-507-87479899999
Q gi|254780170|r  113 SLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASICV-QAGTTTELTLADYFKAHNMK-YHP-IVFERVEEIDA  184 (342)
Q Consensus       113 ~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~-~~~-v~~~~~~~a~~  184 (342)
                       .++.+- +.+-+.-.++++++.     ..-+.++|....... ..++.....+.+++...+.. .++ ...++...+..
T Consensus        73 -~~l~~~-~l~~~~~~lv~~~~h~l~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (232)
T 3ho7_A           73 -EGLEDD-LLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMR  150 (232)
T ss_dssp             -TTEEEE-EEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHH
T ss_pred             -CCCEEE-EECCHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             -430034-200010222111345433222221333145537982599742679999999759988765013588899999


Q ss_pred             HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             9873960299825047999998367800100256--444237101000277757999988774433
Q gi|254780170|r  185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAM  248 (342)
Q Consensus       185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~al  248 (342)
                      ...+|-.=++.-... +    ....+.+...+.|  +....-+++.+.|++... ...++|.+..+
T Consensus       151 lv~~g~Gia~lP~~~-~----~~~~~~~~l~~~p~~~~~~~~~i~lv~~~~~~~-~~~~~~fi~~l  210 (232)
T 3ho7_A          151 LVESGQGITFIPQLT-V----EQLSPSQKELVRPFGMPRPVREVRLAVRQDYSR-RKLREQLIGLL  210 (232)
T ss_dssp             HHHTTCCEEEEEGGG-G----GGSCHHHHTTEECBCSSEEEEEEEEEEETTCSC-HHHHHHHHHHH
T ss_pred             HHHHCCEEEEECHHH-H----HHHCCCCCEEEEECCCCCCEEEEEEEEECCCCC-CHHHHHHHHHH
T ss_conf             999399899830999-9----855027988999889998655999999893988-99999999999


No 71 
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1
Probab=95.29  E-value=0.12  Score=29.35  Aligned_cols=252  Identities=17%  Similarity=0.115  Sum_probs=118.7

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      +-+||+|.+++ |             .|.=+--++..-.+.....++++..+..+.-..+.+|++|+...+ +...-|-.
T Consensus         9 ~~~i~ig~sp~-~-------------~d~~~f~al~~g~~~~~~~~e~~~~d~~~LN~~l~~G~lDv~~iS-s~~y~~~~   73 (280)
T 1zbm_A            9 SHKIRVAHTPD-A-------------DDAFMFYAMTHGKVDTWLEIEHVIEDIETLNRKAFNAEYEVTAIS-AHAYALLD   73 (280)
T ss_dssp             TCEEEEEECSS-H-------------HHHHHHHHHHTTCSCCSCEEEEEECCHHHHHHHGGGTCCSEEEEE-HHHHTTST
T ss_pred             CCEEEEEECCC-C-------------CHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCCEEEHH-HHHHHHCC
T ss_conf             64179997799-9-------------638887899839978998635864799999999986999997171-99999442


Q ss_pred             C-C-CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCC
Q ss_conf             0-2-7843532234402346302113475364178620343134269999999986299850787479899999987396
Q gi|254780170|r  113 S-L-GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHR  190 (342)
Q Consensus       113 ~-~-~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr  190 (342)
                      . + -+... -..-+|.+.+|-.    ++..+|+|++|++..-+|+...|-..+-.   .+..+. ....+...++..|+
T Consensus        74 ~~y~lLp~~-s~~~~g~~~~v~~----~~~~~L~gk~ial~~~stTs~~Ll~ill~---~~~~~~-~~~~~~~~al~~g~  144 (280)
T 1zbm_A           74 DKYRILSAG-ASVGDGYGPVVVA----KSEISLDGKRIAVPGRYTTANLLLKLAVE---DFEPVE-MPFDRIIQAVLDEE  144 (280)
T ss_dssp             TTEEECSSC-CEEESSCCCEEEE----SSCCCCTTCEEEESCTTSHHHHHHHHHCS---SCEEEE-CCGGGHHHHHHTTS
T ss_pred             CCEEECCCE-EEEECCCEEEEEE----CCCCCCCCCEEEECCCCCHHHHHHHHHHH---CCCCCC-CCHHHCCCHHHCCC
T ss_conf             406687863-8840476148996----77667789879856987199999999985---167613-68653350544488


Q ss_pred             EEEE--EECCHHHHHHHHHCCCCHHHCCC--CC---CCCCCCE--E-EECCCC-CHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             0299--82504799999836780010025--64---4423710--1-000277-75799998877443311212330152
Q gi|254780170|r  191 CDAY--TGDISALYALKLTNDRPSEHVIL--PD---IISKSPL--A-PAIIQG-DTEWYNIVSWTHYAMVTAEELGITQK  259 (342)
Q Consensus       191 ~DA~--~~D~s~La~~~~~~~~p~~~~il--~e---~iskEPl--g-~avr~g-D~~w~d~V~W~~~ali~Aee~git~~  259 (342)
                      +||.  +.|.. |..   .  ..+-+.+.  .+   ..+.-|+  | .++|++ +++..   .-+..++.+|-+++.  +
T Consensus       145 ~Da~llIgd~a-l~~---~--~~~~~~v~DLge~W~~~tglP~vfa~~~vrr~~~~~~~---~~~~~al~~s~~~~~--~  213 (280)
T 1zbm_A          145 VDAGLLIHEGQ-ITY---A--DYGLKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQ---EEFLRAMRESIAFAI--E  213 (280)
T ss_dssp             SSEEEECSGGG-GTG---G--GGTCEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHH---HHHHHHHHHHHHHHH--H
T ss_pred             CCCCEECCHHH-HCC---C--CCCCCEEEEHHHHHCCCCCCCEEEEEEEEECCCCHHHH---HHHHHHHHHHHHHHH--H
T ss_conf             87031557588-440---0--24990896626676357798716578875033799999---999999999999999--7


Q ss_pred             HHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHH---CCCCC
Q ss_conf             089886226717788762358876503337998679999999718699987886488899988755760342---89530
Q gi|254780170|r  260 NINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDRNLGNQSELKIPRGYNALWS---KGGLM  336 (342)
Q Consensus       260 nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~rnlg~~s~l~~~r~~N~lw~---~gGl~  336 (342)
                      |.++...        ....        ...||+.....+-+   ..|=+.+.-+||+.    --+|++..|.   +=||+
T Consensus       214 ~~~e~~~--------~~~~--------~~~~l~~~~~~~y~---~~Y~~~~sy~l~~~----~~~gL~~f~~~a~~~Gli  270 (280)
T 1zbm_A          214 NPDEAIE--------YAMK--------YSRGLDRERAKRFA---MMYVNDYTYNMPES----VDAALKKLYEMAEAKGLI  270 (280)
T ss_dssp             SHHHHHH--------HHGG--------GCTTCCHHHHHHHH---HHHSSHHHHSCCHH----HHHHHHHHHHHHHTTTCC
T ss_pred             CHHHHHH--------HHHH--------HHCCCCHHHHHHHH---HHHHHHEEECCCHH----HHHHHHHHHHHHHHCCCC
T ss_conf             9899999--------9999--------81399999999999---99887716489999----999999999999987999


Q ss_pred             CCCCCC
Q ss_conf             378889
Q gi|254780170|r  337 YAPPIR  342 (342)
Q Consensus       337 y~pp~r  342 (342)
                      =.||++
T Consensus       271 ~~P~l~  276 (280)
T 1zbm_A          271 KMPKLD  276 (280)
T ss_dssp             ------
T ss_pred             CCCCCC
T ss_conf             999877


No 72 
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=95.17  E-value=0.055  Score=31.49  Aligned_cols=174  Identities=12%  Similarity=0.071  Sum_probs=94.0

Q ss_pred             EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHCCCEEEEEECCCCCCCC---
Q ss_conf             49998717898830688989880150999999999967982202599814-31002677439627998124325320---
Q gi|254780170|r   35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQSKQIDILSRNTDWTLLR---  110 (342)
Q Consensus        35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~sG~vDil~~~~T~T~~R---  110 (342)
                      +|++|++.+.  ++-         .--+.++..+++.+   .+||++..+ +.+.-.||.+|++|+-+.....-++-   
T Consensus         2 ~i~vg~~~~p--~~~---------~~~e~vk~~~k~~G---i~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~   67 (245)
T 3ir1_A            2 EIVFGTTVGD--FGD---------MVKEQIQPELEKKG---YTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKK   67 (245)
T ss_dssp             EEEEEEETTH--HHH---------HHHHTHHHHHHTTT---CEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHH
T ss_pred             EEEEEECCCC--HHH---------HHHHHHHHHHHHCC---CEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHH
T ss_conf             5999807898--799---------99999889999659---769999956852177998669965231227999999999


Q ss_pred             HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCCC--------------------
Q ss_conf             110278435322344023463021134753641-78620343134269999999986299--------------------
Q gi|254780170|r  111 EISLGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHNM--------------------  169 (342)
Q Consensus       111 d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~--------------------  169 (342)
                      +....+.-..+.|+.+.++.-+   ++++++|| +|.+|++....+++.-.-..+.+.|+                    
T Consensus        68 ~~g~~L~~v~~~~~~p~glYS~---k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~GlI~lk~~~~~~~~t~~DI~~N  144 (245)
T 3ir1_A           68 EHNLDITEVFQVPTAPLGLYPG---KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAEN  144 (245)
T ss_dssp             HHTCCEEEEEECCBCCCEEEES---SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEEC
T ss_pred             HCCCCEEEEEEEEECCEEEECC---CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCC
T ss_conf             8599669986654424276516---8686656799998997458658999999998789389658988664776454155


Q ss_pred             --CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC
Q ss_conf             --850787479899999987396029982504799999836780010025644423710--10002777
Q gi|254780170|r  170 --KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD  234 (342)
Q Consensus       170 --~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD  234 (342)
                        +++++..+. .+..++|  ..+|+.+....  ....+.+ +|.+..+.+.   .+||  .+++|++|
T Consensus       145 pk~l~~~ev~~-a~l~~al--~dvD~avi~~~--~~~~agl-~~~~~l~~e~---~~~y~~~~vvr~~d  204 (245)
T 3ir1_A          145 LKNIKIVELEA-AQLPRSR--ADVDFAVVNGN--YAISSGM-KLTEALFQEP---SFAYVNWSAVKTAD  204 (245)
T ss_dssp             TTCCEEEEECG-GGSGGGG--GTSSEEEECHH--HHHHTTC-CGGGCSEECC---CCTTCCEEEEEGGG
T ss_pred             CCCCEEEECCH-HHHHHHC--CCCCEEEECCH--HHHHCCC-CHHHCEEECC---CCCEEEEEEEECCC
T ss_conf             64665787688-8855532--56778997140--6978797-8234001078---88728999980766


No 73 
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=95.09  E-value=0.18  Score=28.20  Aligned_cols=198  Identities=11%  Similarity=0.056  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-----
Q ss_conf             999999999679822025998143100267743962799812432532011027843532234402346302113-----
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-----  136 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-----  136 (342)
                      +++..+...-  ....+++...+..+.+..|.+|++|+.+...... .+   . .....+.+.+...+++.++..     
T Consensus       110 ~~l~~~~~~~--P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~-~~---~-~~~~~~l~~~~~~~~~~~~~~l~~~~  182 (324)
T 1al3_A          110 GVIKGFIERY--PRVSLHMHQGSPTQIAEAVSKGNADFAIATEALH-LY---D-DLVMLPCYHWNRSIVVTPEHPLATKG  182 (324)
T ss_dssp             HHHHHHHHHC--TEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCC-TT---S-CEEEEEEEEECEEEEECTTSTTTTTS
T ss_pred             HHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCC-CC---C-CEEEEEEEEEEEEEEECCCCHHCCCC
T ss_conf             9999999758--9828999979879998667479825886306767-76---6-50589865300579974652210399


Q ss_pred             CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH
Q ss_conf             47536417862034-313426999999998629985078-7479899999987396029982504799999836780010
Q gi|254780170|r  137 ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH  214 (342)
Q Consensus       137 i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~  214 (342)
                      .-+++||.+..... ..++.....+..++...+...++. .+++...+.+.+.+|.+-++..... . .   ...++. .
T Consensus       183 ~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lp~~~-~-~---~~~~~~-l  256 (324)
T 1al3_A          183 SVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMA-V-D---PVSDPD-L  256 (324)
T ss_dssp             CCCHHHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTSCEEEEEGGG-C-C---TTTCTT-S
T ss_pred             CCCHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCEEEECHHHH-H-H---HHHCCC-E
T ss_conf             99999996287720489984899999999976998756999999999999999399799725989-7-3---874899-8


Q ss_pred             CC--CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             02--5644423710100027775799998877443311212330152089886226717788762
Q gi|254780170|r  215 VI--LPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL  277 (342)
Q Consensus       215 ~i--l~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l  277 (342)
                      +.  +++...+-++..+.|++.. ....+++-+..+  +|+  ++..-+++...-..+.++++++
T Consensus       257 v~~~~~~~~~~~~~~l~~r~~~~-~s~~~~~fi~~~--~~~--l~r~~~~~~~~~~~~~~~~~~~  316 (324)
T 1al3_A          257 VKLDANGIFSHSTTKIGFRRSTF-LRSYMYDFIQRF--APH--LTRDVVDTAVALRSNEDIEAMF  316 (324)
T ss_dssp             EEEECBTTBCCEEEEEEEETTCC-CCHHHHHHHHHH--CTT--CCHHHHHHHHHCCCHHHHHHHH
T ss_pred             EEEECCCCCCCCEEEEEEECCCC-CCHHHHHHHHHH--HHH--HCHHHHHHHHCCCCHHHHHHHH
T ss_conf             99958788865579999969685-699999999999--987--4799898775079979999875


No 74 
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=94.87  E-value=0.21  Score=27.82  Aligned_cols=185  Identities=11%  Similarity=0.037  Sum_probs=114.3

Q ss_pred             HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             85794999871789883068898988015099999999996798220259981431002677439627998124325320
Q gi|254780170|r   31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR  110 (342)
Q Consensus        31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R  110 (342)
                      +.+|.+++|+.....-           .+-..+..++.+.-  ...+++++...+.+.+..|.+|++|+.+.......  
T Consensus        88 ~~~~~i~~~~~~~~~~-----------~~l~~~~~~~~~~~--p~v~~~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~--  152 (294)
T 1ixc_A           88 GDVGELSVAYFGTPIY-----------RSLPLLLRAFLTST--PTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRH--  152 (294)
T ss_dssp             TCCEEEEEEECSGGGG-----------THHHHHHHHHHHHC--TTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCC--
T ss_pred             CCCCEEEEECCCCHHH-----------HHHHHHHHHHHHCC--CCCCCCCEEECCHHCCCCCCCCCEEEEEECCCCCC--
T ss_conf             6652378732530799-----------99999999975318--76444304520310032114796468885167778--


Q ss_pred             HHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEEE---ECCCHHHHHHHHHHHCCCCCCEE-EECCHHH
Q ss_conf             11027843532234402346302113-----475364178620343---13426999999998629985078-7479899
Q gi|254780170|r  111 EISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICVQ---AGTTTELTLADYFKAHNMKYHPI-VFERVEE  181 (342)
Q Consensus       111 d~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v~---~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~  181 (342)
                         .++.+. +.+.+.-.++++++..     --+++|+.+......   .+++....+.++++..+...+++ .+++...
T Consensus       153 ---~~l~~~-~l~~~~~~~~~~~~h~~~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  228 (294)
T 1ixc_A          153 ---PGIEIV-NIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATA  228 (294)
T ss_dssp             ---TTEEEE-EEEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHH
T ss_pred             ---CCCCCC-CCCCCEEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf             ---754222-0135207999827307653999999998189979963876751467777765324547744688657999


Q ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCC--CCCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             99998739602998250479999983678001002--564442371010002777579999887
Q gi|254780170|r  182 IDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVI--LPDIISKSPLAPAIIQGDTEWYNIVSW  243 (342)
Q Consensus       182 a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~i--l~e~iskEPlg~avr~gD~~w~d~V~W  243 (342)
                      +.+...+|..-+++.+.  ++    ....+ +..+  +++.--.-++..+.+++..  ...++|
T Consensus       229 ~~~lv~~g~gia~lp~~--~~----~~~~~-~~~~~~l~~~~~~~~~~li~~~~~~--~p~~~~  283 (294)
T 1ixc_A          229 ALALTMAGAASSIVPAS--VA----AIRWP-DIAFARIVGTRVKVPISCIFRKEKQ--PPILAR  283 (294)
T ss_dssp             HHHHHHTTSCBEEEEHH--HH----TSCCT-TEEEEEECCTTCEEEEEEEEESSSC--CHHHHH
T ss_pred             HHHHHHHCCEEEECCHH--HH----HHHCC-CEEEEECCCCCCEEEEEEEEECCCC--CHHHHH
T ss_conf             99999949979981088--98----55229-8599977898860389999979999--989999


No 75 
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=94.48  E-value=0.069  Score=30.86  Aligned_cols=185  Identities=11%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             HHHHHHHHHH----CCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCC--CCC-CCHHCCCCCCC---------CCCCC
Q ss_conf             9999999996----79822025998-14310026774396279981243--253-20110278435---------32234
Q gi|254780170|r   62 DFCRALSSAI----FDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTD--WTL-LREISLGLAFR---------PITYF  124 (342)
Q Consensus        62 Dl~raiAaal----~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T--~T~-~Rd~~~~v~Fs---------~~~~~  124 (342)
                      +=|+.++.+.    .+....++-|. .+..+-+.+|..|++|+++-.-.  +.. .|+..+..-.+         ..+||
T Consensus        17 ~KC~~l~~~~~a~~~~~~p~~~Cv~~~~~~~C~~~I~~G~AD~~~ld~~~~~~A~~~~~~L~pi~aE~~~~~~~~~~~Y~   96 (327)
T 1ryo_A           17 TKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYY   96 (327)
T ss_dssp             HHHHHHHHHHHHHSCTTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEEEEEEEECSSSEESEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEE
T ss_conf             99999999988632578986699957999999999977998889978699998753458977878872047778851799


Q ss_pred             CCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHH--------------------HHHHHHHHHCCCC------CC-----
Q ss_conf             4023463021134753641786203431-34269--------------------9999999862998------50-----
Q gi|254780170|r  125 DGQGFIMHKKKGISSVSQLSGASICVQA-GTTTE--------------------LTLADYFKAHNMK------YH-----  172 (342)
Q Consensus       125 dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e--------------------~~l~~~~~~~~~~------~~-----  172 (342)
                        ...+|++++.+ ++.+|.||+.|-.- |.|.-                    ..+.+||...=.+      +.     
T Consensus        97 --aVavVkk~s~~-~~~~LkGKksChtG~~~taGw~~Pv~~l~~~~~~~~~~~~~~v~~fF~~sC~pg~~~~~~~~lC~l  173 (327)
T 1ryo_A           97 --AVAVVKKDSGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQL  173 (327)
T ss_dssp             --EEEEEETTCCC-CGGGCTTCCEEESCTTCTTTTHHHHHHHGGGSCSCCCSHHHHHHHHSSSEECTTSCTTTCGGGGTT
T ss_pred             --EEEEEECCCCC-CHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             --99999678744-465626995021588885211157889975258888750456787606654678677665421346


Q ss_pred             --------EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCC-------------CCCCCCEEEECC
Q ss_conf             --------78747989999998739602998250479999983678001002564-------------442371010002
Q gi|254780170|r  173 --------PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPD-------------IISKSPLAPAII  231 (342)
Q Consensus       173 --------~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e-------------~iskEPlg~avr  231 (342)
                              .-.|-.+..++.-|..|.-|.-....+.+.-.-....++++|.+|=.             .+.+.|-..++-
T Consensus       174 C~~~~~~~~~~Y~G~~GAlrCL~eg~GDVAFv~~~~v~~~~~~~~~~~dy~llC~dg~~~~~~~~~~C~~~~~P~~~v~~  253 (327)
T 1ryo_A          174 CPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVA  253 (327)
T ss_dssp             STTCCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCSHHHHTTEEEECTTSCEEEGGGGGGSCSEEEECCEEEE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             77878898656648077899998589846998541154430354677534118899997455556667510577842798


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             777579999887744331121
Q gi|254780170|r  232 QGDTEWYNIVSWTHYAMVTAE  252 (342)
Q Consensus       232 ~gD~~w~d~V~W~~~ali~Ae  252 (342)
                      +.|..+.+.|.   ..|..+.
T Consensus       254 ~~~~~~~~~i~---~~L~~~~  271 (327)
T 1ryo_A          254 RSMGGKEDLIW---ELLNQAQ  271 (327)
T ss_dssp             CSSSCCHHHHH---HHHHHHH
T ss_pred             CCCCCCHHHHH---HHHHHHH
T ss_conf             89855089999---9999999


No 76 
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=94.27  E-value=0.29  Score=26.94  Aligned_cols=154  Identities=11%  Similarity=0.017  Sum_probs=91.5

Q ss_pred             CCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEE
Q ss_conf             22025998143100267743962799812432532011027843532234402346302113-----4753641786203
Q gi|254780170|r   75 PSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASIC  149 (342)
Q Consensus        75 ~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~  149 (342)
                      ..++.++..+..+....|.+|++|+.+...... .+ ...++.+. +.+.+.-.++++++..     +....+++..-+.
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~g~~D~ai~~~~~~-~~-~~~~l~~~-~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  205 (310)
T 2esn_A          129 GVRLRLVNAERKLSVEALASGRIDFALGYDEEH-ER-LPEGIQAH-DWFADRYVVVARRDHPRLAGAPTLEGYLAERHAV  205 (310)
T ss_dssp             TCEEEEECCSSSCCHHHHHHTSSSEEEECCSTT-CC-CCTTEEEE-EEEEECEEEEEESSCTTCSSSCCHHHHHTSEEEE
T ss_pred             CCCCEEECCCCHHHHHHHCCCCCCEEEEECCCC-CC-CCCCCEEE-EEEEEEEEEECCCCCHHHCCCCCHHHHHCCCCEE
T ss_conf             632112115503332221057740589824765-55-77774268-8245447873277884235999978981398189


Q ss_pred             EEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC--CE
Q ss_conf             431342699999999862998507-874798999999873960299825047999998367800100256444237--10
Q gi|254780170|r  150 VQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS--PL  226 (342)
Q Consensus       150 v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE--Pl  226 (342)
                      +.........+.+++...+...++ +..++...+...+.+|..=++.-+.   .+...  .+-....++|-++...  ++
T Consensus       206 ~~~~~~~~~~~~~~~~~~g~~~~i~~~~~s~~~~l~~v~~g~~i~~lP~~---~~~~~--~~~~~l~~~~~p~~~~~~~i  280 (310)
T 2esn_A          206 VTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRH---AARAL--AEAAGLALYPAPFDIPPYVL  280 (310)
T ss_dssp             ECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTSSCEEEEEHH---HHHHH--HHHHTEEEECCSSCCCCEEE
T ss_pred             EECCCCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCEEEHHHHH---HHHHH--HHCCCEEEECCCCCCCCEEE
T ss_conf             83798862377789997499987259969899999999939978836899---99988--55599799828989986689


Q ss_pred             EEEC---CCCCHH
Q ss_conf             1000---277757
Q gi|254780170|r  227 APAI---IQGDTE  236 (342)
Q Consensus       227 g~av---r~gD~~  236 (342)
                      ..+.   +++|+.
T Consensus       281 ~l~~h~~~~~~p~  293 (310)
T 2esn_A          281 RLYSHVQHVGRDA  293 (310)
T ss_dssp             EEEEECC--CCHH
T ss_pred             EEEECCCCCCCHH
T ss_conf             9998988779989


No 77 
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=94.25  E-value=0.13  Score=29.20  Aligned_cols=133  Identities=21%  Similarity=0.077  Sum_probs=80.1

Q ss_pred             EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCH
Q ss_conf             02599814310026774396279981243253201102784353223440234630211347536417862034313426
Q gi|254780170|r   77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTT  156 (342)
Q Consensus        77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~  156 (342)
                      .+++.-+-..+....+..|-+|+.+.+.-|-.|.+.....-..-.+-..-..+.++++..+.+    ..++|+    |.+
T Consensus        39 ~i~i~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~v~~~~~L~~g~c~l~vA~p~~~~~~~----~~~rIA----TkY  110 (219)
T 1o63_A           39 DIVCFMVRPFDVPTYLVHGVADIGFCGTDVLLEKETSLIQPFFIPTNISRMVLAGPKGRGIPE----GEKRIA----TKF  110 (219)
T ss_dssp             TEEEEEECGGGHHHHHHTTSCSEEEEEHHHHHHSCCCCBCCSEEEEEEEEEEEEEETTTCCCS----SCEEEE----ESC
T ss_pred             CEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCEEEEEECCCCCCCCC----CCCEEE----EHH
T ss_conf             969999788999999984998646550777754336523553145550247862154456555----562653----221


Q ss_pred             HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf             99999999862998507874798999999873960299825047999998367800100256444237
Q gi|254780170|r  157 ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS  224 (342)
Q Consensus       157 e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE  224 (342)
                      ....++||+.++++++++......|.  |...|-+|+++.=.+.=..++.     +..+++.+.+...
T Consensus       111 pnit~~ff~~~gi~~~ii~l~GavE~--Ap~~G~AD~IVDivsTG~TLk~-----N~Lk~i~~il~ss  171 (219)
T 1o63_A          111 PNVTQRYCESKGWHCRIIPLKGSVEL--APIAGLSDLIVDITETGRTLKE-----NNLEILDEIFVIR  171 (219)
T ss_dssp             HHHHHHHHHHHTCCEEEEECSSCTTH--HHHHTSCSEEEEEESSSHHHHH-----TTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCEEEEEEEECCHHHHHH-----CCCEECCEEEEEE
T ss_conf             44999999983993489975697767--8889832178888357588998-----7899830176217


No 78 
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=94.24  E-value=0.18  Score=28.21  Aligned_cols=115  Identities=10%  Similarity=0.045  Sum_probs=65.4

Q ss_pred             CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC--HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEEC
Q ss_conf             20259981431002677439627998124325320--1102784353223440234630211347536417862034313
Q gi|254780170|r   76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR--EISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAG  153 (342)
Q Consensus        76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R--d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~G  153 (342)
                      ..++++..+.++.-..+..|++|+..-+ ++..-|  +.-.-+. +....-.++++++-.+   ..+++|+|++|++...
T Consensus        30 ~~~~~~~~~p~~LN~~l~~g~~Dv~~iS-s~~y~~~~~~y~llp-siss~G~v~sv~l~s~---~p~~~l~~~~Ial~~~  104 (272)
T 2czl_A           30 VPLEPVLEDVETLNRWALEGRLPLTKLS-YAAYAQVRDRYVALR-SGGALGRGVGPLVVAR---GPLQALEGLRVAVPGR  104 (272)
T ss_dssp             SCEEEEECCHHHHHHHHHTTCCSEEEEE-HHHHTTCTTTEEECS-SSCEEESSCCCEEEES---SCCSCCTTCEEEESCT
T ss_pred             CCCEEEECCHHHHHHHHHCCCCCEEEHH-HHHHHHCCCCEEECC-CEEECCCCCCEEEEEC---CCHHHCCCCEEEECHH
T ss_conf             8516853799999999984999886060-999972727687837-4664589767599936---9845516985974717


Q ss_pred             CCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE--EECCH
Q ss_conf             42699999999862998507874798999999873960299--82504
Q gi|254780170|r  154 TTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY--TGDIS  199 (342)
Q Consensus       154 TT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~--~~D~s  199 (342)
                      |+|-.+|-..+-......+    ....+...++..|++||.  ++|..
T Consensus       105 s~TS~~Llrill~~~~~~~----~~~~~~~~~~~~~~~da~LlIGD~A  148 (272)
T 2czl_A          105 HTTAYFLLSLYAQGFVPVE----VRYDRILPMVAQGEVEAGLIIHESR  148 (272)
T ss_dssp             TSHHHHHHHHHCSSCEEEE----CCGGGHHHHHHTTSSSEEEECTTHH
T ss_pred             HHHHHHHHHHHHHHCCCCC----CCCCCCCCHHHCCCCCEEEECCHHH
T ss_conf             7789999999997567655----7701467444438877236607177


No 79 
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=94.23  E-value=0.29  Score=26.89  Aligned_cols=181  Identities=10%  Similarity=0.081  Sum_probs=111.9

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
                      .+|.||+|+......+           +=.++...+.+. . ...++++...+..+....|.+|++|+.+......  . 
T Consensus        12 ~~G~lrIg~~~~~a~~-----------~Lp~~l~~f~~~-~-P~i~l~i~~~~~~~l~~~L~~g~~D~ai~~~~~~--~-   75 (228)
T 2fyi_A           12 TSGVLTIATTHTQARY-----------SLPEVIKAFREL-F-PEVRLELIQGTPQEIATLLQNGEADIGIASERLS--N-   75 (228)
T ss_dssp             CCEEEEEEECHHHHHH-----------THHHHHHHHHHH-C-TTEEEEEEECCHHHHHHHHHHTSCSEEEESSSST--T-
T ss_pred             CCCEEEEEEEHHHHHH-----------HHHHHHHHHHHH-C-CCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCC--C-
T ss_conf             9717999975889999-----------999999999998-8-9948999967659999998668833233311235--6-


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf             102784353223440234630211-----3475364178620343-13426999999998629985078-7479899999
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA  184 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~  184 (342)
                       ..++.+ .+.+.+...++++++.     ..-++.||.+..+.+. .++.....+.+++...+...+++ .+++...+..
T Consensus        76 -~~~~~~-~~l~~~~~~~v~~~~~~~~~~~~i~~~dL~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (228)
T 2fyi_A           76 -DPQLVA-FPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKT  153 (228)
T ss_dssp             -CTTEEE-EEEEEECEEEEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHH
T ss_pred             -CCCCEE-EEEEECCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf             -865336-773203430113564200034444478872597212689981788899876503877753478478999999


Q ss_pred             HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHH
Q ss_conf             9873960299825047999998367800100256--444237101000277757
Q gi|254780170|r  185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTE  236 (342)
Q Consensus       185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~  236 (342)
                      .+.+|..=++..+..  +   ....++ ..+.+|  +...+-++..+.+++...
T Consensus       154 ~v~~g~gi~~lp~~~--~---~~~~~~-~lv~l~~~~~~~~~~~~l~~~~~~~~  201 (228)
T 2fyi_A          154 YVALGLGIGLVAEQS--S---GEQEEE-NLIRLDTRHLFDANTVWLGLKRGQLQ  201 (228)
T ss_dssp             HHHHTSCEEEEEGGG--G---STTCCT-TEEEECCTTTSCCEEEEEEEETTCCB
T ss_pred             HHHCCCEEEECCHHH--H---HHHHCC-CEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf             986599999863999--8---565459-98999687777640899999896867


No 80 
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=94.12  E-value=0.038  Score=32.55  Aligned_cols=58  Identities=10%  Similarity=0.019  Sum_probs=40.0

Q ss_pred             CCCEEECCCCCEEEEH-----HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC
Q ss_conf             8830688989880150-----9999999999679822025998143100267743962799812
Q gi|254780170|r   45 VGFAEVKANGDWKGFD-----VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN  103 (342)
Q Consensus        45 ppfs~~d~~G~~~GfD-----VDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~  103 (342)
                      +-.+..|-+|+-.|+-     --+.+...+.-+.++.++++++.... ...+|.+|++|.++..
T Consensus        97 ~i~~~~DLkGK~v~~~~~~~~~~~l~~~l~~~Gl~~~~v~~v~~~~~-~~~al~~G~iDa~~~~  159 (302)
T 3ix1_A           97 DFDSPADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFE-LGASIVSGRADAVVGT  159 (302)
T ss_dssp             CCSSGGGGTTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTTC-HHHHHHHSSSSEEEEE
T ss_pred             CCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC-HHHHHHCCCCCEECCC
T ss_conf             98887895676221789977899999999972899761178458843-8999985997700065


No 81 
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.12  E-value=0.31  Score=26.75  Aligned_cols=171  Identities=10%  Similarity=-0.043  Sum_probs=96.6

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      +|++++|+.....           ..+=..+++.+.+.--  ...+++.+.+..+....|..|++|+.+........   
T Consensus        18 ~~~~rI~~~~~~~-----------~~~lp~ll~~l~~~~P--~v~i~l~~~~~~~~~~~L~~g~iDl~I~~~~~~~~---   81 (241)
T 3oxn_A           18 DQTFTIATTDYAM-----------QTILPFALPRIYQEAP--NVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVE---   81 (241)
T ss_dssp             CCEEEEEECSHHH-----------HHTHHHHHHHHHHHCT--TCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCT---
T ss_pred             CCEEEEEECHHHH-----------HHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCC---
T ss_conf             8689999737999-----------9999999999999886--92899997987999999975985422202678741---


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCC----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCC-EEEECCHHHHHHHH
Q ss_conf             027843532234402346302113----47536417862-0343134269999999986299850-78747989999998
Q gi|254780170|r  113 SLGLAFRPITYFDGQGFIMHKKKG----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYH-PIVFERVEEIDAAY  186 (342)
Q Consensus       113 ~~~v~Fs~~~~~dgq~~lVrk~~~----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~-~v~~~~~~~a~~al  186 (342)
                        .+.+ .+.+-+.-.++++++..    --+++|+.... |.+..+......+..++.. +..-+ .+..++...+...+
T Consensus        82 --~l~~-~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~lv  157 (241)
T 3oxn_A           82 --PLRS-EILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALID-KPQRKMVLRAYHLEAALAIV  157 (241)
T ss_dssp             --TEEE-EEEECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTT-SCCCEEEEECSSTHHHHHHC
T ss_pred             --CCCC-CCCCCCCCEEECCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHH-CCCCCCEEEECCHHHHHHHH
T ss_conf             --0113-5432236402237665032025889999529869995799862399999996-79998559967899999999


Q ss_pred             HCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEE
Q ss_conf             739602998250479999983678001002564442371010
Q gi|254780170|r  187 RAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAP  228 (342)
Q Consensus       187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~  228 (342)
                      ..|..=+++...  ++...   .+....+++|-++...|+-.
T Consensus       158 ~~~~~i~ilP~~--~~~~~---~~~~~L~~~plp~~~p~~~~  194 (241)
T 3oxn_A          158 DTLPIIITVPAD--LAYLV---AERYDLVVKPLPFQFTPFDY  194 (241)
T ss_dssp             --CCCEEEEEHH--HHHHH---HHHTTEEEECCSSCCCCCCE
T ss_pred             HCCCEEEEHHHH--HHHHH---HHCCCEEEECCCCCCCCEEE
T ss_conf             759979987999--99988---65399699848999897689


No 82 
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=94.09  E-value=0.31  Score=26.72  Aligned_cols=148  Identities=11%  Similarity=0.069  Sum_probs=82.8

Q ss_pred             CCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC-CCCCEEEEE-ECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHH
Q ss_conf             002677439627998124325320110278435322-344023463-0211347536417-8620343134269999999
Q gi|254780170|r   87 ERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT-YFDGQGFIM-HKKKGISSVSQLS-GASICVQAGTTTELTLADY  163 (342)
Q Consensus        87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~-~~dgq~~lV-rk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~  163 (342)
                      +.-.+|.+|++|+.+.++---+... ..++....+. =-|..-++| +++...+++.+|. |.+|+    |++-.- +.+
T Consensus        83 ele~aLl~g~iDiAVHSlKDlP~~~-~~gl~i~a~~~R~dprD~lv~~~~~~~~~l~~lp~ga~IG----TSS~RR-~aq  156 (364)
T 3ecr_A           83 ELEHALEKNEVDLVVHSLKDLPTVL-PPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVG----TSSLRR-AAQ  156 (364)
T ss_dssp             HHHHHHHTTSCSEEEEEGGGSCSSC-CTTEEEEEECCCCCCCEEEEECTTCTTCCTTTSCTTCEEE----CCCHHH-HHH
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCC-CCCCCEECCCCCCCCCCEEEECCCCCCCCHHHCCCCCEEE----CCCHHH-HHH
T ss_conf             9999996499888987256577645-7876211234779825468865630000274579988860----372679-999


Q ss_pred             HHHCCCCCCEEEECCHH-HHHHHHH-CCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCC----CCCCEEEECCCCCHHH
Q ss_conf             98629985078747989-9999987-3960299825047999998367800100256444----2371010002777579
Q gi|254780170|r  164 FKAHNMKYHPIVFERVE-EIDAAYR-AHRCDAYTGDISALYALKLTNDRPSEHVILPDII----SKSPLAPAIIQGDTEW  237 (342)
Q Consensus       164 ~~~~~~~~~~v~~~~~~-~a~~al~-~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~i----skEPlg~avr~gD~~w  237 (342)
                      ++...++.+++.+..+- .-+..|. .|..||++--...|  .|..+.+.-.+.+-|+.+    ..--+|+-.|++|.+.
T Consensus       157 l~~~~pdl~i~~iRGNIdTRl~KL~~~ge~DaiILA~AGl--~RLgl~~~~~~~l~~~~~~PA~gQGaiaie~r~~d~~~  234 (364)
T 3ecr_A          157 LQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGL--QRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDI  234 (364)
T ss_dssp             HHHHCTTSEEECCCSCHHHHHHHHHHSSSCSEEEEEHHHH--HHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHH
T ss_pred             HHHHCCCCCEEECCCCHHHHHHHHHCCCCCCEEEEHHHHH--HHHHHHHCCCCCCCHHHCCCCCCCCEEEEEEECCCHHH
T ss_conf             9886772624532587999999863348731897656677--77664220231468566176545202799980577888


Q ss_pred             HHHHH
Q ss_conf             99988
Q gi|254780170|r  238 YNIVS  242 (342)
Q Consensus       238 ~d~V~  242 (342)
                      .++++
T Consensus       235 ~~ll~  239 (364)
T 3ecr_A          235 LDLVG  239 (364)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99988


No 83 
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=93.76  E-value=0.11  Score=29.52  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=34.3

Q ss_pred             HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHH---HCCCCCCCCCCCEEEECCCCCHH
Q ss_conf             999998629985078747989999998739602998250479999983678001---00256444237101000277757
Q gi|254780170|r  160 LADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSE---HVILPDIISKSPLAPAIIQGDTE  236 (342)
Q Consensus       160 l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~---~~il~e~iskEPlg~avr~gD~~  236 (342)
                      +.++++...++     -+...++......|+      | +.=++.+.-..||+.   ++--.+....+|+-++.    ..
T Consensus       110 a~~~l~~~~~t-----~~~~~~l~~~i~~g~------~-~~~aA~~Wl~~n~~~v~~Wl~g~~~~~~~~i~i~~----~~  173 (268)
T 2b4l_A          110 AAKLLSQFKWT-----QDEMGEIMIKVEEGE------K-PAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINLAY----VA  173 (268)
T ss_dssp             HHHHHHTCCCC-----HHHHHHHHHHHHTTC------C-HHHHHHHHHHHCHHHHHHHTTTCCCCSSCEEEEEE----CC
T ss_pred             HHHHHHHCCCC-----HHHHHHHHHHHHCCC------C-HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEE----CC
T ss_conf             99999974889-----999999999998599------9-99999999997929999885165467777515642----48


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             9999887744331121233015
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQ  258 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~  258 (342)
                      |-+..-=+.-+-...|++|.+-
T Consensus       174 W~~~~a~t~v~~~iLe~~Gy~V  195 (268)
T 2b4l_A          174 WDSEIASTNVIGKVLEDLGYEV  195 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCE
T ss_conf             7618999999999999869953


No 84 
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=93.56  E-value=0.28  Score=27.02  Aligned_cols=53  Identities=15%  Similarity=0.015  Sum_probs=37.4

Q ss_pred             CCCCCEEEEH----HH-HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC
Q ss_conf             8989880150----99-99999999679822025998143100267743962799812
Q gi|254780170|r   51 KANGDWKGFD----VD-FCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN  103 (342)
Q Consensus        51 d~~G~~~GfD----VD-l~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~  103 (342)
                      |-+|+-.|+.    .+ +++.+.+.-+.++.+|+++.+...+...+|.+|++|..+..
T Consensus       102 DLkGK~Iav~~g~~~~~~~~~~L~~~Gl~~~dv~~v~~~~~~~~~al~~g~vda~~~~  159 (308)
T 2x26_A          102 DLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIW  159 (308)
T ss_dssp             GGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSEEEEE
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEC
T ss_conf             9469722335886589999999998399842447630582567777642255489963


No 85 
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=93.46  E-value=0.41  Score=26.01  Aligned_cols=196  Identities=8%  Similarity=0.012  Sum_probs=119.1

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
                      .+|.|++|+.......           +-.++..++...-  ....++++..+..+.+..|.+|++|+.+...... .. 
T Consensus        90 ~~~~l~I~~~~~~~~~-----------~l~~~i~~~~~~~--p~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~-~~-  154 (305)
T 3fxq_A           90 WEGHITFAASPAIALA-----------ALPLALASFAREF--PDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKH-DI-  154 (305)
T ss_dssp             HHTEEEEEECHHHHHT-----------HHHHHHHHHHHHC--TTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGG-GS-
T ss_pred             CCCEEEEEECCCHHHH-----------HHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCC-CC-
T ss_conf             6625999624630276-----------7899999999978--9976765744817777787559734899840554-35-


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCCC---CCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCC-CCE-EEECCHHHHHHH
Q ss_conf             1027843532234402346302113---475364178620343-1342699999999862998-507-874798999999
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKKG---ISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMK-YHP-IVFERVEEIDAA  185 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~~---i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~-~~~-v~~~~~~~a~~a  185 (342)
                       ...+.+ .+.+.+...++++++..   ..++++|.....+.. .++..-..+.++++..++. ..+ ..+++.......
T Consensus       155 -~~~l~~-~~l~~~~~~~~~~~~hpl~~~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  232 (305)
T 3fxq_A          155 -DTDLEA-QPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGV  232 (305)
T ss_dssp             -CTTEEE-EEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHH
T ss_pred             -CCCCEE-EECCCCCEEEEECCCCCCCCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             -688437-871444179998688845689895675302145523776531257789997198632233333679999999


Q ss_pred             HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC---HHHHHHHHHHHHHHH
Q ss_conf             873960299825047999998367800100256--4442371010002777---579999887744331
Q gi|254780170|r  186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD---TEWYNIVSWTHYAMV  249 (342)
Q Consensus       186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD---~~w~d~V~W~~~ali  249 (342)
                      +.+|..-++..+..  +   ......++.+.+|  +..-..++..+.+++-   +.-..+++|.-.-..
T Consensus       233 v~~g~gi~~lp~~~--~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~fi~~i~~~~~  296 (305)
T 3fxq_A          233 VAHSDLLTTMPRTL--Y---ERNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHAL  296 (305)
T ss_dssp             HHTSSCEEEEEHHH--H---HSSTTGGGEEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHCC
T ss_pred             HHCCCEEEECCHHH--H---HHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             97499899811999--9---8551379989996888887768999998969889999999999999999


No 86 
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=93.38  E-value=0.42  Score=25.93  Aligned_cols=145  Identities=15%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             CCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC-CCCCEEEEEECCCCCCCHHHHC-CCCEEEEECCCHHHHHHHHH
Q ss_conf             002677439627998124325320110278435322-3440234630211347536417-86203431342699999999
Q gi|254780170|r   87 ERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT-YFDGQGFIMHKKKGISSVSQLS-GASICVQAGTTTELTLADYF  164 (342)
Q Consensus        87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~-~~dgq~~lVrk~~~i~s~~dL~-G~~I~v~~GTT~e~~l~~~~  164 (342)
                      +.-.+|.+|++|+.+.++---+... ..++..+.+. =-|..-+++.+  ...++.+|. |.+||    |++-.- +..+
T Consensus        65 ele~aLl~g~iDiAVHSlKDlP~~~-~~gl~i~av~~R~d~rD~li~~--~~~~l~~lp~g~~IG----TsS~RR-~aql  136 (313)
T 1gtk_A           65 ELEVALLENRADIAVHSMKDVPVEF-PQGLGLVTICEREDPRDAFVSN--NYDSLDALPAGSIVG----TSSLRR-QCQL  136 (313)
T ss_dssp             HHHHHHHTTSCSEEEEEGGGSCSCC-CTTEEEEEECCCCCCCEEEECS--SCSSGGGCCTTCEEE----CCCHHH-HHHH
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCHHHHHCCC--CCCCHHHCCCCCEEE----CCCHHH-HHHH
T ss_conf             9999986387648975136577546-9985699995678888875037--635562489989883----188889-9999


Q ss_pred             HHCCCCCCEEEECC-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC-CCCC----CCCCEEEECCCCCHHHH
Q ss_conf             86299850787479-899999987396029982504799999836780010025-6444----23710100027775799
Q gi|254780170|r  165 KAHNMKYHPIVFER-VEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL-PDII----SKSPLAPAIIQGDTEWY  238 (342)
Q Consensus       165 ~~~~~~~~~v~~~~-~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il-~e~i----skEPlg~avr~gD~~w~  238 (342)
                      +...++.+++.+.. .+.-+..|.+|++||++--...|  .|..+...- +.++ ++.+    ..--+|+-.|++|++..
T Consensus       137 ~~~~pdl~i~~iRGNVdTRl~KL~~g~~DaiILA~AGl--~RLgl~~~~-~~~l~~~~~~PA~gQGaiave~r~~d~~~~  213 (313)
T 1gtk_A          137 AERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGL--KRLGLESRI-RAALPPEISLPAVGQGAVGIECRLDDSRTR  213 (313)
T ss_dssp             HHHCTTSEEECCCSCHHHHHHHHHTTSCSEEEEEHHHH--HHTTCGGGC-SEECCTTTSCCCTTTTCEEEEEETTCHHHH
T ss_pred             HHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEECCHH--CCCCCCCCC-EEECCCHHCCCCCCCCEEEEEECCCCHHHH
T ss_conf             98689993775647699999997678977898640012--101211330-486160204664100125665517858899


Q ss_pred             HHHH
Q ss_conf             9988
Q gi|254780170|r  239 NIVS  242 (342)
Q Consensus       239 d~V~  242 (342)
                      +++.
T Consensus       214 ~~l~  217 (313)
T 1gtk_A          214 ELLA  217 (313)
T ss_dssp             HHHG
T ss_pred             HHHH
T ss_conf             9998


No 87 
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=93.23  E-value=0.1  Score=29.83  Aligned_cols=58  Identities=14%  Similarity=0.060  Sum_probs=42.8

Q ss_pred             CCEEEEECCCHHHH--H-HHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEE-CCHHHHH
Q ss_conf             62034313426999--9-999986299850787479899999987396029982-5047999
Q gi|254780170|r  146 ASICVQAGTTTELT--L-ADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTG-DISALYA  203 (342)
Q Consensus       146 ~~I~v~~GTT~e~~--l-~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~-D~s~La~  203 (342)
                      .|||...+......  . +.++++.|++++.+.|.+..++++||.+|++|+... ..+.+..
T Consensus         8 irvG~~~~~~~~~~~~~~k~~~e~~Gl~Ve~~~f~~g~~~~~Al~~G~iD~~~~g~~~~~~~   69 (237)
T 3k2d_A            8 VKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDR   69 (237)
T ss_dssp             EEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHH
T ss_conf             89996079859999999777898669889999808825689999769977787545789986


No 88 
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=92.77  E-value=0.079  Score=30.49  Aligned_cols=81  Identities=10%  Similarity=0.054  Sum_probs=53.4

Q ss_pred             CCEEEEECCCHHH---HHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE-EECCHHHHHHHHHCCCCHHHCCCCCCC
Q ss_conf             6203431342699---999999862998507874798999999873960299-825047999998367800100256444
Q gi|254780170|r  146 ASICVQAGTTTEL---TLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY-TGDISALYALKLTNDRPSEHVILPDII  221 (342)
Q Consensus       146 ~~I~v~~GTT~e~---~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~-~~D~s~La~~~~~~~~p~~~~il~e~i  221 (342)
                      .+||+..|.-.+.   .++..+++.|++.+++.|+++.+.-.||.+|++|+- ....+-|......  +..+.+.+. .+
T Consensus         3 i~vg~~~~p~~~~~~e~vk~~~k~~Gi~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~~--~g~~L~~v~-~~   79 (245)
T 3ir1_A            3 IVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKE--HNLDITEVF-QV   79 (245)
T ss_dssp             EEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHH--HTCCEEEEE-EC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHHH--CCCCEEEEE-EE
T ss_conf             999807898799999998899996597699999568521779986699652312279999999998--599669986-65


Q ss_pred             CCCCEEEE
Q ss_conf             23710100
Q gi|254780170|r  222 SKSPLAPA  229 (342)
Q Consensus       222 skEPlg~a  229 (342)
                      -.+|+|+.
T Consensus        80 ~~~p~glY   87 (245)
T 3ir1_A           80 PTAPLGLY   87 (245)
T ss_dssp             CBCCCEEE
T ss_pred             EECCEEEE
T ss_conf             44242765


No 89 
>2vd2_A ATP phosphoribosyltransferase; HISG, cytoplasm, glycosyltransferase, histidine biosynthesis, amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=92.58  E-value=0.33  Score=26.54  Aligned_cols=129  Identities=14%  Similarity=0.076  Sum_probs=77.2

Q ss_pred             EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCC----CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE
Q ss_conf             02599814310026774396279981243253201102----78435322344023463021134753641786203431
Q gi|254780170|r   77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISL----GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA  152 (342)
Q Consensus        77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~----~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~  152 (342)
                      .+++.-+-..+.-..+..|.+|+.+.+.-|-.|.+...    .+.|...    ...+.++.+....+    .+++|+   
T Consensus        48 ~i~~~~~r~~DIp~~v~~G~~DlGI~G~D~l~E~~~~v~~l~dLg~G~c----~l~vA~p~~~~~~~----~~~rIA---  116 (214)
T 2vd2_A           48 NLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKC----HLAVAGLPNTDWSG----VAPRIA---  116 (214)
T ss_dssp             TEEEEEECTTHHHHHHHHTSSSEEECCTHHHHSCSCSSEEEEECTTSCC----EEEEEECTTCCCCS----SSCEEE---
T ss_pred             CEEEEEECCCCHHHHHHCCCCCCCEEEEHHHCCCCCCCCEEEECCCCCE----EEEEEECCCCCCCC----CCCEEE---
T ss_conf             8799996522199999759988134774662430146657886466748----99997348633245----455776---


Q ss_pred             CCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf             342699999999862998507874798999999873960299825047999998367800100256444237
Q gi|254780170|r  153 GTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS  224 (342)
Q Consensus       153 GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE  224 (342)
                       |.+....++||.++|++++++......|.  |...|-+|+++.=.+.    -.++.. +..+++.+.+...
T Consensus       117 -TkYp~it~~ff~~~gi~~~iv~~~GsvE~--ap~~g~AD~IvDiv~T----G~TLk~-N~L~~i~~il~ss  180 (214)
T 2vd2_A          117 -TKYPNVASSYFREQGEQVEIIKLNGSIEL--APLIGLADRIVDIVST----GQTLKE-NGLVETEHICDIT  180 (214)
T ss_dssp             -ESCHHHHHHHHHHHCCCCEEEECCSCTTH--HHHTTSCSEEEEEECC----SSSSCT-TSCEEEEEEEECC
T ss_pred             -EHHHHHHHHHHHHCCCCEEEEECCCHHHC--CCCCCCCCEEEEEECC----HHHHHH-CCCEEEEEEEEEE
T ss_conf             -40254899999984997269975283115--6899961289976077----588998-7899744576678


No 90 
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=92.57  E-value=0.34  Score=26.52  Aligned_cols=56  Identities=14%  Similarity=0.047  Sum_probs=39.2

Q ss_pred             EEECCCCCEEEEHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC
Q ss_conf             06889898801509-----999999999679822025998143100267743962799812
Q gi|254780170|r   48 AEVKANGDWKGFDV-----DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN  103 (342)
Q Consensus        48 s~~d~~G~~~GfDV-----Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~  103 (342)
                      +..|=+|+-.|+..     .+...+.++-+.++.+|+++.++..+...+|++|++|..+..
T Consensus       125 s~~DLkGK~v~v~~gs~~~~~l~~~L~~~Gl~~~dV~~v~~~~~~~~~al~~G~vDa~~~~  185 (324)
T 3ksx_A          125 TVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIW  185 (324)
T ss_dssp             SGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTCCSEEEEE
T ss_pred             CHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCEEEEC
T ss_conf             9789389989875687306799999998799732354012582666666531350099981


No 91 
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=92.00  E-value=0.13  Score=29.17  Aligned_cols=179  Identities=9%  Similarity=0.057  Sum_probs=105.8

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      +|.|++|+.+....+           +=.++.+.+.++- - ..++++...++.+.+..|.+|++|+.+.....   .  
T Consensus         4 ~G~lrIg~~~~~~~~-----------~lp~~l~~f~~~~-P-~v~i~i~~~~~~~l~~~l~~~~~d~~~~~~~~---~--   65 (219)
T 1i6a_A            4 SGPLHIGLIPTVGPY-----------LLPHIIPMLHQTF-P-KLEMYLHEAQTHQLLAQLDSGKLDAVILALVK---E--   65 (219)
T ss_dssp             CEEEEEEECTTTHHH-----------HHHHHHHHHHHHC-T-TEEEEEEECCHHHHHHHHHHTSCSEEEEECCG---G--
T ss_pred             EEEEEEEEEHHHHHH-----------HHHHHHHHHHHHC-C-CCEEEEEECCCHHHHHHHHCCCCHHHHCCCCC---C--
T ss_conf             189999837779999-----------9999999999988-8-96899998884888888753640101023553---2--


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHH
Q ss_conf             027843532234402346302113-----475364178620343-13426999999998629985078-74798999999
Q gi|254780170|r  113 SLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAA  185 (342)
Q Consensus       113 ~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~a  185 (342)
                      ..++.+. +.+.+...++++++..     .-+++||....+... .+......+..++.+.+...+++ .+++...+...
T Consensus        66 ~~~~~~~-~l~~~~~~~v~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  144 (219)
T 1i6a_A           66 SEAFIEV-PLFDEPMLLAIYEDHPWANREAVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNM  144 (219)
T ss_dssp             GTTSEEE-EEEEEEEEEEEETTSGGGGCSCEEGGGGTTSEEECCTTTTCSSCTTSSCSSCTTSEEECTTTTSCHHHHHHH
T ss_pred             CCCCCCC-CCCCCCEEEEEECCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf             3453234-344553699992597111699989899804768984587531567778999738998704774899999999


Q ss_pred             HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf             873960299825047999998367800100256--44423710100027775
Q gi|254780170|r  186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT  235 (342)
Q Consensus       186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~  235 (342)
                      ..+|..=++.-+...    . .....+..+.+|  +..-+-+++.+.|++.+
T Consensus       145 v~~g~gi~~lp~~~~----~-~~~~~~~l~~l~~~~~~~~~~~~lv~~~~~~  191 (219)
T 1i6a_A          145 VAAGSGITLLPALAV----P-PERKRDGVVYLPAIKPEPRRTIGLVYRPGSP  191 (219)
T ss_dssp             HHTTSCBEEEEGGGS----C-SSSEETTEEEECEESSCCEEEEEEEECTTCT
T ss_pred             HHHCCEEEEECHHHH----H-HHHHCCCEEEEECCCCCCEEEEEEEEECCCC
T ss_conf             980998999038999----7-5510798899988899853599999979196


No 92 
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=91.59  E-value=0.27  Score=27.15  Aligned_cols=170  Identities=13%  Similarity=0.183  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECC--CCCCC-CHHCCC-CCC--------CCCCCCCCEE
Q ss_conf             9999999996798220259981-431002677439627998124--32532-011027-843--------5322344023
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNT--DWTLL-REISLG-LAF--------RPITYFDGQG  128 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~--T~T~~-Rd~~~~-v~F--------s~~~~~dgq~  128 (342)
                      .=|..++++.-.....++-|.. +..+-+.+++.|+.|+++-.-  -++.. ++..+. +-.        ..++||  ..
T Consensus        18 ~KC~~m~~~~~~~~~~i~Cv~~~s~~~C~~~I~~g~AD~~~ld~~~vy~A~~~~~~L~pi~~E~y~~~~~~~~~y~--av   95 (332)
T 1iej_A           18 KKCNNLRDLTQQERISLTCVQKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYY--AV   95 (332)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEEEEEEECSSSEESEEE--EE
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEE--EE
T ss_conf             9999999986215987698858999999999976998889978599888532536888757621037788843789--99


Q ss_pred             EEEECCCCCCCHHHHCCCCEEEEE-CCCH-------------------------HHHHHHHHHHC---C-----------
Q ss_conf             463021134753641786203431-3426-------------------------99999999862---9-----------
Q gi|254780170|r  129 FIMHKKKGISSVSQLSGASICVQA-GTTT-------------------------ELTLADYFKAH---N-----------  168 (342)
Q Consensus       129 ~lVrk~~~i~s~~dL~G~~I~v~~-GTT~-------------------------e~~l~~~~~~~---~-----------  168 (342)
                      .+|++++.+ ++.+|.||+.|-.- |.|.                         +..+.+||.+.   |           
T Consensus        96 avvkk~s~~-~~~~L~GkksCHtG~~~taGw~~Pv~~L~~~~~i~~~~~~~~~~~~~~~~FF~~sC~PG~~~~~~lC~lC  174 (332)
T 1iej_A           96 AVVKKGTEF-TVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSASCVPGATIEQKLCRQC  174 (332)
T ss_dssp             EEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCCGGGCCHHHHHHHHSSEEECTTCCSCGGGGTTC
T ss_pred             EEEECCCCC-CHHHHCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             999468865-4666358850304899874047999999866887765788644889999860145123666775410147


Q ss_pred             ----CC--CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC-------------CCCCCEEEE
Q ss_conf             ----98--50787479899999987396029982504799999836780010025644-------------423710100
Q gi|254780170|r  169 ----MK--YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI-------------ISKSPLAPA  229 (342)
Q Consensus       169 ----~~--~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~-------------iskEPlg~a  229 (342)
                          ..  -.--.|-.+..|++-|..|.-|.-....+.+.-  ....++++|.+|=.-             +.+-|-..+
T Consensus       175 ~g~~~~~c~~~~~Y~Gy~GA~rCL~eg~GDVAFvk~~tv~~--~~~~~~~d~~lLC~dg~~~~~~~~~~C~l~~~P~~~v  252 (332)
T 1iej_A          175 KGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNE--NAPDQKDEYELLCLDGSRQPVDNYKTCNWARVAAHAV  252 (332)
T ss_dssp             CSCTTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHH--HCTTSGGGEEEECTTSCEEEGGGTTTSCSEEEECCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECHHHHH--HCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCEE
T ss_conf             89887768988867562017999974997479986421443--0445555414587789816755686674125777437


Q ss_pred             CCCCCHH
Q ss_conf             0277757
Q gi|254780170|r  230 IIQGDTE  236 (342)
Q Consensus       230 vr~gD~~  236 (342)
                      +.+.|..
T Consensus       253 v~r~d~~  259 (332)
T 1iej_A          253 VARDDNK  259 (332)
T ss_dssp             EECSSTT
T ss_pred             EECCCCC
T ss_conf             9888622


No 93 
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=91.45  E-value=0.73  Score=24.38  Aligned_cols=166  Identities=11%  Similarity=0.029  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC----
Q ss_conf             9999999999679822025998143100267743962799812432532011027843532234402346302113----
Q gi|254780170|r   61 VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG----  136 (342)
Q Consensus        61 VDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~----  136 (342)
                      ..+..++.+.-  ...++++...+..+.+..|.+|++|+.+......     ...+.+ .+.+.+...++++++..    
T Consensus       106 ~~~l~~~~~~~--p~v~l~~~~~~~~~l~~~l~~g~~Dlai~~~~~~-----~~~~~~-~~l~~~~~~~~~~~~~~l~~~  177 (312)
T 2h9b_A          106 PRIIHLYRQAH--PNLRIELYEMGTKAQTEALKEGRIDAGFGRLKIS-----DPAIKH-SLLRNERLMVAVHASHPLNQM  177 (312)
T ss_dssp             HHHHHHHHHTC--TTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCC-----CTTEEE-EEEEEEEEEEEEETTSGGGGG
T ss_pred             HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC-----CCCCEE-EEECCCEEEEEECCCCHHHHC
T ss_conf             99999999978--9977853135507799999769964799606889-----876179-981130599996378846653


Q ss_pred             ---CCCHHHHCCCCEEEE---ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
Q ss_conf             ---475364178620343---13426999999998629985078-74798999999873960299825047999998367
Q gi|254780170|r  137 ---ISSVSQLSGASICVQ---AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTND  209 (342)
Q Consensus       137 ---i~s~~dL~G~~I~v~---~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~  209 (342)
                         ..+++||......+.   .++.....+..++...+....++ .+++...+.+.+.+|.+=++.-... .     ...
T Consensus       178 ~~~~~~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~g~gi~ilP~~~-~-----~~~  251 (312)
T 2h9b_A          178 KDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPAST-Q-----SIQ  251 (312)
T ss_dssp             TTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTTSCBEEEEGGG-G-----GBC
T ss_pred             CCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEEEEECHHH-H-----HHH
T ss_conf             3432025564379779842876651246666666650788614653167999999998399599920988-7-----453


Q ss_pred             CCHHHCCC--CCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             80010025--64442371010002777579999887
Q gi|254780170|r  210 RPSEHVIL--PDIISKSPLAPAIIQGDTEWYNIVSW  243 (342)
Q Consensus       210 ~p~~~~il--~e~iskEPlg~avr~gD~~w~d~V~W  243 (342)
                      . .+.+.+  ++..-.-++.++.|++..  ...+++
T Consensus       252 ~-~~l~~~pl~~~~~~~~~~l~~r~~~~--~~~~~~  284 (312)
T 2h9b_A          252 L-FNLSYVPLLDPDAITPIYIAVRNMEE--STYIYS  284 (312)
T ss_dssp             C-TTEEEEEBCSTTCEEEEEEEEETTCC--CHHHHH
T ss_pred             H-CCEEEEECCCCCCEEEEEEEEECCCC--CHHHHH
T ss_conf             3-88799985798863289999979999--989999


No 94 
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp}
Probab=91.32  E-value=0.76  Score=24.30  Aligned_cols=138  Identities=13%  Similarity=0.084  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHCCCCCEEEEEE--CCCCCCHHHHHCCCEEEEEECCCCC---C-----------------CCH--HCCCCC
Q ss_conf             999999999679822025998--1431002677439627998124325---3-----------------201--102784
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLP--LNAKERFLALQSKQIDILSRNTDWT---L-----------------LRE--ISLGLA  117 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~--~~~~~rf~aL~sG~vDil~~~~T~T---~-----------------~Rd--~~~~v~  117 (342)
                      .+.+.+-..-++...+++...  .+..-.+.+|.+|+||+....-|-|   .                 .+.  ...++.
T Consensus        26 ~i~~~iLe~~g~~~v~~~~~~~~g~~~~~~~al~~GdiDv~~e~w~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (282)
T 3o66_A           26 HMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQT  105 (282)
T ss_dssp             HHHHHHHHHHTTTSCCCEEEEEESSHHHHHHHHHHTSCSEEEEEEHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHSEE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf             99999998545983488865777628999999986997184042044577766335665787999999986565327836


Q ss_pred             CCCCCCC-CCEEEEEECC----CCCCCHHHHCCC----CEEEEECCCHHH--HHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf             3532234-4023463021----134753641786----203431342699--9999998629985078747989999998
Q gi|254780170|r  118 FRPITYF-DGQGFIMHKK----KGISSVSQLSGA----SICVQAGTTTEL--TLADYFKAHNMKYHPIVFERVEEIDAAY  186 (342)
Q Consensus       118 Fs~~~~~-dgq~~lVrk~----~~i~s~~dL~G~----~I~v~~GTT~e~--~l~~~~~~~~~~~~~v~~~~~~~a~~al  186 (342)
                      ...|..+ +.+++.|++.    .+++++.||...    .++...+..+..  .+....+..++...-..--+......|+
T Consensus       106 ~~~~~~~~~~~~~~v~~~~a~~~~i~~i~dl~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~a~~~~A~  185 (282)
T 3o66_A          106 FFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDAL  185 (282)
T ss_dssp             ECCCCSCBCCEEEEECHHHHHHHTCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHHHHHCCCCSEEEEECGGGHHHHH
T ss_pred             EECCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf             50564323455543568786334802201001333111123475444544203566654045566554222378899998


Q ss_pred             HCCCEEEEEECCH
Q ss_conf             7396029982504
Q gi|254780170|r  187 RAHRCDAYTGDIS  199 (342)
Q Consensus       187 ~~Gr~DA~~~D~s  199 (342)
                      .+|+++++..=.+
T Consensus       186 ~~~~~~v~~~w~p  198 (282)
T 3o66_A          186 NTEKLDVALGYST  198 (282)
T ss_dssp             HTTSCSEEEEETT
T ss_pred             HCCCCEEEEECCC
T ss_conf             6489769980488


No 95 
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A*
Probab=90.96  E-value=0.82  Score=24.08  Aligned_cols=189  Identities=13%  Similarity=0.072  Sum_probs=110.0

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
                      .+|.+++|+...+..           .+-.++.+++.+.-  ....+++...++.+....|.+|++|+.+.....+..  
T Consensus        88 ~~~~l~i~~~~~~~~-----------~~l~~~l~~~~~~~--P~v~i~i~~~~~~~~~~~l~~~~~Di~i~~~~~~~~--  152 (313)
T 2h98_A           88 VSQTLRIGYVSSLLY-----------GLLPEIIYLFRQQN--PEIHIELIECGTKDQINALKQGKIDLGFGRLKITDP--  152 (313)
T ss_dssp             -CCEEEEEECGGGGG-----------TTHHHHHHHHHHHC--TTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCT--
T ss_pred             CCCEEEEEECHHHHH-----------HHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHCCCCCCEEEECCCCCC--
T ss_conf             662399986105678-----------89999999998629--933432112782789999742155513530356673--


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCCC-------CCCHHHHCCCCEEE---EECCCHHHHHHHHHHHCCCCCCEE-EECCHH
Q ss_conf             1027843532234402346302113-------47536417862034---313426999999998629985078-747989
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKKG-------ISSVSQLSGASICV---QAGTTTELTLADYFKAHNMKYHPI-VFERVE  180 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-------i~s~~dL~G~~I~v---~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~  180 (342)
                         ++. ..+.+.+...++++++..       --+.++|.......   ..+......+..+++..+....++ .+++..
T Consensus       153 ---~~~-~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (313)
T 2h98_A          153 ---AIR-RIMLHKEQLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQ  228 (313)
T ss_dssp             ---TEE-EEEEEEEEEEEEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHH
T ss_pred             ---HHH-HHHHHHHHHEEECCCCCHHHHCCCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCHH
T ss_conf             ---134-5543332203420477624433578758899808987984145676410256677886389874001349899


Q ss_pred             HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             9999987396029982504799999836780010025--6444237101000277757999988774433
Q gi|254780170|r  181 EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDTEWYNIVSWTHYAM  248 (342)
Q Consensus       181 ~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~~w~d~V~W~~~al  248 (342)
                      .+.....+|..=++.....  +    .. ..++.+.+  ++.--.-|++.+.|+++.  ...++|.+..+
T Consensus       229 ~~~~~v~~g~gi~~lP~~~--~----~~-~~~~l~~~pl~~~~~~~~i~l~~r~~~~--~~~~~~f~~~~  289 (313)
T 2h98_A          229 LALGLVAAGEGVCIVPASA--M----DI-GVKNLLYIPILDDDAYSPISLAVRNMDH--SNYIPKILACV  289 (313)
T ss_dssp             HHHHHHHTTSCBEEEEGGG--G----GS-CCTTEEEEEBCSTTCEEEEEEEEETTCC--CTHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEEEHHHH--H----HH-HCCCEEEEECCCCCCCEEEEEEEECCCC--CHHHHHHHHHH
T ss_conf             9999999499699713889--8----44-3099899987899860079999989988--97999999999


No 96 
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=90.77  E-value=0.35  Score=26.43  Aligned_cols=137  Identities=15%  Similarity=0.056  Sum_probs=81.1

Q ss_pred             EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEE-EEEECCCCCCCHHHHCCCCEEEEECCC
Q ss_conf             0259981431002677439627998124325320110278435322344023-463021134753641786203431342
Q gi|254780170|r   77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQG-FIMHKKKGISSVSQLSGASICVQAGTT  155 (342)
Q Consensus        77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~-~lVrk~~~i~s~~dL~G~~I~v~~GTT  155 (342)
                      .+++.-+-..+.-..+..|.+|+.+.+.-|-.|.+.......  -.+--|.. +.|-........+.+.+++|+    |.
T Consensus        43 ~i~~~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~~~~~l--~~L~~G~c~l~vA~~~~~~~~~~~~~~rIA----Tk  116 (208)
T 1z7m_E           43 DLQIIFGKPNDVITFLEHGIVDIGFVGKDTLDENDFDDYYEL--LYLKIGQCIFALASYPDFSNKNFQRHKRIA----SK  116 (208)
T ss_dssp             SCCEEEECHHHHHHHHHTTSCSEEEEEHHHHHHSSCCCEEEE--EEETTCCCEEEEEECGGGGGCCCSSCEEEE----ES
T ss_pred             CEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEE--ECCCCCCEEEEECCCCCCCCHHCCCCCEEE----EH
T ss_conf             859999888999999976987622003877631677417988--012578179997540013310011375884----22


Q ss_pred             HHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE
Q ss_conf             69999999986299850787479899999987396029982504799999836780010025644423710
Q gi|254780170|r  156 TELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL  226 (342)
Q Consensus       156 ~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl  226 (342)
                      +....+.||.+++++++++......|.  |-..|-+|+++.=.+.=..++.     +..+++.+.+..+.-
T Consensus       117 Yp~it~~~~~~~gi~~~ii~l~GsvE~--aP~~G~AD~IvDivsTG~TLk~-----N~L~~i~~i~~ssa~  180 (208)
T 1z7m_E          117 YPRVTKKYFAQKQEDIEIIKLEGSVEL--GPVVGLADAIVDIVETGNTLSA-----NGLEVIEKISDISTR  180 (208)
T ss_dssp             CHHHHHHHHHHTTCCEEEEECSSCTTH--HHHTTSCSEEEEEESSSHHHHT-----TTCEEEEEEEECCEE
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCEEEEEEECCCHHHHHH-----CCCEECEEEEEEEEE
T ss_conf             368999999983994479967777767--6787820288886178889998-----879985158765889


No 97 
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=90.69  E-value=0.74  Score=24.37  Aligned_cols=134  Identities=15%  Similarity=0.140  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCC-CC-CHHC-CCCC--CCCCCCCCCEEEEEECCC-
Q ss_conf             9999999996798220259981431002677439627998124325-32-0110-2784--353223440234630211-
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWT-LL-REIS-LGLA--FRPITYFDGQGFIMHKKK-  135 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T-~~-Rd~~-~~v~--Fs~~~~~dgq~~lVrk~~-  135 (342)
                      +++++.-+.-+   .+|+++..........+++| .|+++..-... .. ++.. ..++  ...+..+...+++++++. 
T Consensus        17 ~l~~~Fek~tG---i~V~~~~~~s~~l~~~i~~~-aDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~   92 (237)
T 2hxw_A           17 DIANKYSEKTG---VKVNVNFGPQATWFEKAKKD-ADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQKGNP   92 (237)
T ss_dssp             HHHHHHHHHHC---CCEEEEESSHHHHHHHHHHH-CSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEEEESTTCT
T ss_pred             HHHHHHHHHHC---CEEEEEECCCHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCC
T ss_conf             99999988019---75999977829999997659-999998460478999886104677772799994329999979997


Q ss_pred             -CCCCHHHHCCCCEEEE--E--CC--CHHHHH-HHHH-HHCCC-------CCCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf             -3475364178620343--1--34--269999-9999-86299-------850787479899999987396029982504
Q gi|254780170|r  136 -GISSVSQLSGASICVQ--A--GT--TTELTL-ADYF-KAHNM-------KYHPIVFERVEEIDAAYRAHRCDAYTGDIS  199 (342)
Q Consensus       136 -~i~s~~dL~G~~I~v~--~--GT--T~e~~l-~~~~-~~~~~-------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s  199 (342)
                       .+++++||....+...  .  +.  +....+ .... .....       .-.++.+.+..++..++.+|++|+.+.-.+
T Consensus        93 ~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~d~~i~~~~  172 (237)
T 2hxw_A           93 LKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWID  172 (237)
T ss_dssp             TCCCSHHHHHHSCCCEEECCCTTSSCCTTTTHHHHHHHTTCCHHHHHHHHHTEEEECCCCTTC--CTTTTTCSEEEEEHH
T ss_pred             CCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCHHHHHHHHHHCCCEEEEEEHH
T ss_conf             67652356642031066513688732227999999862222088999743570586588899999997077709987445


No 98 
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=89.20  E-value=0.52  Score=25.34  Aligned_cols=70  Identities=13%  Similarity=0.075  Sum_probs=47.1

Q ss_pred             HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCH
Q ss_conf             999999986299850787479899999987396029982504799999836780010025644423710100027775
Q gi|254780170|r  158 LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDT  235 (342)
Q Consensus       158 ~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~  235 (342)
                      ..++..++..+++++++.+++..+++.++.+|+||.+.+-...        +...++.....++...+.+.++|++++
T Consensus        60 dll~~i~~~lg~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~t--------~~r~~~~~~s~p~~~~~~~~v~~~~~~  129 (267)
T 3mpk_A           60 AVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVN--------SARESFLSFSRPYVRNGMVIVTRQDPD  129 (267)
T ss_dssp             HHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEEEEEECC--------GGGTTTEEECSCSEEECEEEEEESSTT
T ss_pred             HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCC--------HHHHHCCCCCCCEECCCEEEEEECCCC
T ss_conf             9999999984995799982899999998636966599647899--------889840776762130440454201443


No 99 
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=88.86  E-value=1.2  Score=23.02  Aligned_cols=128  Identities=15%  Similarity=0.037  Sum_probs=78.0

Q ss_pred             CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCC----CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEE
Q ss_conf             202599814310026774396279981243253201102----7843532234402346302113475364178620343
Q gi|254780170|r   76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISL----GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQ  151 (342)
Q Consensus        76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~----~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~  151 (342)
                      ..+++.-+-..+.-..+..|.+|+.+.+.-|-.|.+...    .+.|...-    -.+.++.      .+..++++|+  
T Consensus        45 ~~i~~~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~v~~l~dL~fG~cr----l~va~~~------~~~~~~~rIA--  112 (206)
T 1ve4_A           45 GGVALLELRNKDVPIYVDLGIAEIGVVGKDVLLDSGRDLFEPVDLGFGACR----LSLIRRP------GDTGPIRRVA--  112 (206)
T ss_dssp             TSEEEEEECGGGHHHHHHTTSSSEEEEEHHHHHHCCSCCEEEEECCCSCEE----EEEEECT------TCCSCCCEEE--
T ss_pred             CCEEEEEECHHHHHHHHHCCCCCEEECCHHHHHHCCCCCCEEEEEEEECEE----EEEEEEC------CCCCCCCEEE--
T ss_conf             987999977476999998498752002166665138986277435786669----9999860------5468740542--


Q ss_pred             ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf             1342699999999862998507874798999999873960299825047999998367800100256444237
Q gi|254780170|r  152 AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS  224 (342)
Q Consensus       152 ~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE  224 (342)
                        |.+....++||++++++++++......|  .|-..|-+|+++.=.+.=..++.     +..+++.+.+..+
T Consensus       113 --TkYpnit~~~~~~~gi~~~ii~l~GsvE--~ap~~g~AD~IvDiv~TG~TLk~-----N~L~~i~~Il~s~  176 (206)
T 1ve4_A          113 --TKYPNFTARLLKERGWAADVVELSGNIE--LAAVTGLADAVVDVVQTGATLRA-----AGLVEVEVLAHST  176 (206)
T ss_dssp             --ESCHHHHHHHHHHTTCCCEEEECSSCTH--HHHHTTSSSEEEEEESSSHHHHH-----TTCEEEEEEEEEC
T ss_pred             --EHHHHHHHHHHHHCCCCCEEEECCCCCC--CCCCCCCCEEEEEEECCHHHHHH-----CCCEEEEEEEEEE
T ss_conf             --0269999999997499724996868603--54678851089998468999998-----7997515898648


No 100
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=88.76  E-value=0.086  Score=30.28  Aligned_cols=42  Identities=12%  Similarity=0.028  Sum_probs=30.0

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCC--------------------------CHHHHHCCCEEEEEECCC
Q ss_conf             999999967982202599814310--------------------------026774396279981243
Q gi|254780170|r   64 CRALSSAIFDDPSKIQYLPLNAKE--------------------------RFLALQSKQIDILSRNTD  105 (342)
Q Consensus        64 ~raiAaal~gd~~kVe~v~~~~~~--------------------------rf~aL~sG~vDil~~~~T  105 (342)
                      .+..-+..+.++.+|+++++...+                          ...+|.+|+||..+..-.
T Consensus       160 l~~~l~~~Gl~~~dV~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aAL~~G~VDA~~~~~P  227 (365)
T 2de3_A          160 LLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLP  227 (365)
T ss_dssp             HHHHHHHTTCCGGGSEEEECCCTTTCCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEEEHH
T ss_pred             HHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCH
T ss_conf             99999984999899376204804444444310000134443212344204899997698269996575


No 101
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=87.12  E-value=1.5  Score=22.35  Aligned_cols=145  Identities=13%  Similarity=0.006  Sum_probs=91.5

Q ss_pred             CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEE
Q ss_conf             2025998143100267743962799812432532011027843532234402346302113-----47536417862034
Q gi|254780170|r   76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICV  150 (342)
Q Consensus        76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v  150 (342)
                      .+++++..+....+..|.+|++|+.+.....   -  ...+.+ .+.+.+.-.++++++..     ......++-..+.+
T Consensus       134 ~~i~i~~~~~~~~~~~l~~g~~D~~i~~~~~---~--~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (315)
T 1uth_A          134 IQISTLRPNAGNLKEDMESGAVDLALGLLPE---L--QTGFFQ-RRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGV  207 (315)
T ss_dssp             CEEEEECTTSSCHHHHHHHTSCCEEEECCTT---C--CTTEEE-EEEEEECEEEEEETTCSSCCSSCCHHHHHHSEEEEE
T ss_pred             CCEEEEEECHHHHHHHHHCCCCEEEEEECCC---C--CCCCEE-EEEEEEEEEEEECCCCHHHCCCCCHHHHHHCCEEEE
T ss_conf             6328997044889999867995299980799---9--998289-997611069996287554328988367741871798


Q ss_pred             EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCC--CCCEE
Q ss_conf             313426999999998629985078-747989999998739602998250479999983678001002564442--37101
Q gi|254780170|r  151 QAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIIS--KSPLA  227 (342)
Q Consensus       151 ~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~is--kEPlg  227 (342)
                      ..+.+....+..+++..+...+++ .+++...+...+.+|..=++..+.   ....  .....+.+++|-++.  .-++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lP~~---~~~~--~~~~~~l~~~~~~~~~~~~~~~  282 (315)
T 1uth_A          208 VALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQR---FAVR--CEVPFGLTTSPHPAKLPDIAIN  282 (315)
T ss_dssp             CCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTSSCBEEEEHH---HHHH--HTTTTTEEEEECSSCCCCEEEE
T ss_pred             ECCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCEEEECCHH---HHHH--HHHCCCEEEECCCCCCCCEEEE
T ss_conf             5598615899999997699873379528578899999809999980199---9997--7446997997789888966899


Q ss_pred             EECC
Q ss_conf             0002
Q gi|254780170|r  228 PAII  231 (342)
Q Consensus       228 ~avr  231 (342)
                      .+.+
T Consensus       283 l~~~  286 (315)
T 1uth_A          283 LFWH  286 (315)
T ss_dssp             EEEE
T ss_pred             EEEC
T ss_conf             9986


No 102
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=87.10  E-value=1.5  Score=22.34  Aligned_cols=123  Identities=10%  Similarity=0.046  Sum_probs=63.3

Q ss_pred             CEEEEEE--CCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCCCC-------CCC--CCCCCCCEEEEEECCC--CCCCHH
Q ss_conf             2025998--1431002677439-627998124325320110278-------435--3223440234630211--347536
Q gi|254780170|r   76 SKIQYLP--LNAKERFLALQSK-QIDILSRNTDWTLLREISLGL-------AFR--PITYFDGQGFIMHKKK--GISSVS  141 (342)
Q Consensus        76 ~kVe~v~--~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~~v-------~Fs--~~~~~dgq~~lVrk~~--~i~s~~  141 (342)
                      .+|+++.  ..+..+..++..| +.||++......+++-...+.       .|.  ...|+....++++++.  .++++.
T Consensus        34 ~~V~v~~~~ggSg~~~~~i~~g~~aDV~~~a~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~w~  113 (310)
T 1sbp_A           34 DNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRIDKNWIKRLPDDSAPYTSTIVFLVRKGNPKQIHDWN  113 (310)
T ss_dssp             CEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHHHHHHHHHTTSSCTTGGGGSHHHHCSEEBCEEEEEETTCTTCCCSGG
T ss_pred             CCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCHH
T ss_conf             97799964786199999997499989898577788999997799872033430357403661258997079855666578


Q ss_pred             HHCCCCE--EEEECCC--HH----HHHH---------------HHHHHCCCCCCEEEECCHHH-HHHHHHCCCEEEEEEC
Q ss_conf             4178620--3431342--69----9999---------------99986299850787479899-9999873960299825
Q gi|254780170|r  142 QLSGASI--CVQAGTT--TE----LTLA---------------DYFKAHNMKYHPIVFERVEE-IDAAYRAHRCDAYTGD  197 (342)
Q Consensus       142 dL~G~~I--~v~~GTT--~e----~~l~---------------~~~~~~~~~~~~v~~~~~~~-a~~al~~Gr~DA~~~D  197 (342)
                      ||.....  ....-.+  .-    ..+.               ++++...-+ ..+...+..+ ....+.+|++|+...-
T Consensus       114 DL~~~~~k~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~n-~~~~~~~~~~~~~~~v~~Ge~~~~i~~  192 (310)
T 1sbp_A          114 DLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAEDFVKALFKN-VEVLDSGARGSTNTFVERGIGDVLIAW  192 (310)
T ss_dssp             GGGSTTCCEECCCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-EEECCSSHHHHHHHHHTSCCCSEEEEE
T ss_pred             HHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCEECCCCHHHHHHHHHCCCCCEEEEE
T ss_conf             7612232425416776641169999999988640377589999999986315-733035766899999975987179885


Q ss_pred             CH
Q ss_conf             04
Q gi|254780170|r  198 IS  199 (342)
Q Consensus       198 ~s  199 (342)
                      .+
T Consensus       193 ~~  194 (310)
T 1sbp_A          193 EN  194 (310)
T ss_dssp             HH
T ss_pred             CC
T ss_conf             11


No 103
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A
Probab=86.76  E-value=1.6  Score=22.22  Aligned_cols=137  Identities=12%  Similarity=0.148  Sum_probs=78.1

Q ss_pred             HHHHHHHCCC-CCEEEEEEC--CCCCCHHHHHCCCEEEEEECCCCC----CCCH-------------------HCCCCCC
Q ss_conf             9999996798-220259981--431002677439627998124325----3201-------------------1027843
Q gi|254780170|r   65 RALSSAIFDD-PSKIQYLPL--NAKERFLALQSKQIDILSRNTDWT----LLRE-------------------ISLGLAF  118 (342)
Q Consensus        65 raiAaal~gd-~~kVe~v~~--~~~~rf~aL~sG~vDil~~~~T~T----~~Rd-------------------~~~~v~F  118 (342)
                      -.|++.++.+ --+||.++.  +....|.+|.+|++|+......-.    ....                   ...++-+
T Consensus        22 a~i~~~~Le~~Gy~Ve~~~~~~~~~~~~~al~~GdiDv~~e~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (275)
T 1sw5_A           22 ANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVV  101 (275)
T ss_dssp             HHHHHHHHHHTTCCEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             99999999986996599864786088999997699778973021046787764465435667789998764312677588


Q ss_pred             CCCC-CCCCEEEEEECC----CCCCCHHHHCCCCEEEEECCCHH-----HHHHHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf             5322-344023463021----13475364178620343134269-----9999999862998507874798999999873
Q gi|254780170|r  119 RPIT-YFDGQGFIMHKK----KGISSVSQLSGASICVQAGTTTE-----LTLADYFKAHNMKYHPIVFERVEEIDAAYRA  188 (342)
Q Consensus       119 s~~~-~~dgq~~lVrk~----~~i~s~~dL~G~~I~v~~GTT~e-----~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~  188 (342)
                      ..++ +-+..++.|++.    .++.++.||++......-|...+     ..........++.++...-...+...+|+.+
T Consensus       102 ~~~~~~~~~~~~~v~~~~a~~~~~~~~~dl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~~A~~~  181 (275)
T 1sw5_A          102 AAKLGFRDDYALAVRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKN  181 (275)
T ss_dssp             EEEEEEECCEEEEEEHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHT
T ss_pred             ECCCCCCCCCEEEECHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
T ss_conf             25654468523667678742148566765101023541202776421465789888844986566434444788999865


Q ss_pred             CCEEEEEECCHHH
Q ss_conf             9602998250479
Q gi|254780170|r  189 HRCDAYTGDISAL  201 (342)
Q Consensus       189 Gr~DA~~~D~s~L  201 (342)
                      |+..++..=.+.-
T Consensus       182 ~~~~v~~~w~P~~  194 (275)
T 1sw5_A          182 KQVDVIPAYTTDS  194 (275)
T ss_dssp             TSCSEEEEETTCH
T ss_pred             CCCEEEEECCCCC
T ss_conf             8974998258875


No 104
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=83.12  E-value=2.3  Score=21.18  Aligned_cols=186  Identities=12%  Similarity=0.138  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHCCC-CCEEEEEEC-CCCCCHHHHHCCCEEEEEECCC--CCC-CCHHCCCCCCC---------CCCCCCCE
Q ss_conf             9999999996798-220259981-4310026774396279981243--253-20110278435---------32234402
Q gi|254780170|r   62 DFCRALSSAIFDD-PSKIQYLPL-NAKERFLALQSKQIDILSRNTD--WTL-LREISLGLAFR---------PITYFDGQ  127 (342)
Q Consensus        62 Dl~raiAaal~gd-~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T--~T~-~Rd~~~~v~Fs---------~~~~~dgq  127 (342)
                      +=|++++.+.-.+ ...++-+.. +..+-+.+++.|+.|+++-.-.  ++. .|+..+..-..         ..+|+  .
T Consensus        18 ~KC~~l~~a~~~~~~p~i~Cv~~~~~~~C~~~I~~g~AD~~~ld~~~~y~A~~~~~~L~pi~~E~~~~~~~~~~~y~--a   95 (334)
T 1h45_A           18 TKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYY--A   95 (334)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEEECSSSEESEEE--E
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEE--E
T ss_conf             99999999876347988599958999999999976998889978399887405656988767651267778862799--9


Q ss_pred             EEEEECCCCCCCHHHHCCCCEEEEE-CCCH----------------------HHHHHHHHHHC---CC---C--------
Q ss_conf             3463021134753641786203431-3426----------------------99999999862---99---8--------
Q gi|254780170|r  128 GFIMHKKKGISSVSQLSGASICVQA-GTTT----------------------ELTLADYFKAH---NM---K--------  170 (342)
Q Consensus       128 ~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~----------------------e~~l~~~~~~~---~~---~--------  170 (342)
                      ..+|++++.+ ++.+|.||+.|-.- +.|.                      +..+.+||...   |.   .        
T Consensus        96 Vavvkk~s~~-~~~~LkGkksChtg~~~~aGw~~Pi~~L~~~~~~~~~~~~~~~a~~~FF~~sC~PG~~~~~~~~LC~lC  174 (334)
T 1h45_A           96 VAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLDWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLC  174 (334)
T ss_dssp             EEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHGGGSCCCCTTSCHHHHHHHHSSEEECTTSCTTTCGGGTTTC
T ss_pred             EEEEECCCCC-CHHHHCCCCCCCCCCCCCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             9998347865-466745885004688876652345787754056578885188899876402235587766564301227


Q ss_pred             ---------C-CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC-------------CCCCCEE
Q ss_conf             ---------5-0787479899999987396029982504799999836780010025644-------------4237101
Q gi|254780170|r  171 ---------Y-HPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI-------------ISKSPLA  227 (342)
Q Consensus       171 ---------~-~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~-------------iskEPlg  227 (342)
                               . .--.|-.+.-++.=|..|.-|.-....+.+........++++|.+|=.-             +.+.|-.
T Consensus       175 ~g~~~~~C~~~~~~~Y~G~~GAlrCL~eg~GDVAFv~~~~v~~~~~~~~~~~d~~lLC~dg~~~~~~~~~~C~l~~~P~~  254 (334)
T 1h45_A          175 AGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIGESTVFEDLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSH  254 (334)
T ss_dssp             CCCGGGTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHCCCHHHHTTEEEEETTTEEEEGGGGGGSCSEEEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             79888877789888776741168899719986799741454421355466667378888998646667765742016772


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             00027775799998877443311212
Q gi|254780170|r  228 PAIIQGDTEWYNIVSWTHYAMVTAEE  253 (342)
Q Consensus       228 ~avr~gD~~w~d~V~W~~~ali~Aee  253 (342)
                      .++-+.|..+.+.+.   ..|..+.+
T Consensus       255 ~v~~~~~~~~~~~i~---~~L~~~~~  277 (334)
T 1h45_A          255 AVVARSVNGKEDAIW---NLLRQAQE  277 (334)
T ss_dssp             EEEEESSSCCHHHHH---HHHHHHHH
T ss_pred             EEEECCCCCCHHHHH---HHHHHHHH
T ss_conf             589888744299999---99999999


No 105
>3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396}
Probab=82.03  E-value=2.6  Score=20.92  Aligned_cols=58  Identities=9%  Similarity=0.088  Sum_probs=48.5

Q ss_pred             HHCCCCEEEEECCCHH-HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf             4178620343134269-999999986299850787479899999987396029982504
Q gi|254780170|r  142 QLSGASICVQAGTTTE-LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS  199 (342)
Q Consensus       142 dL~G~~I~v~~GTT~e-~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s  199 (342)
                      .|.|++|-+....... ..+...+...++.+++..+++..+++..+.....|.++.|..
T Consensus         2 sl~~krILlVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~dliilD~~   60 (144)
T 3kht_A            2 SLRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG   60 (144)
T ss_dssp             ---CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCC
T ss_conf             98899899995899999999999996899829999899999999997179999998699


No 106
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureus subsp. aureus MU50, structural genomics; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=79.25  E-value=2.7  Score=20.84  Aligned_cols=128  Identities=10%  Similarity=0.100  Sum_probs=62.4

Q ss_pred             EEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCC------CCCHHCCCCCC--
Q ss_conf             068898988015099999999996798220259981-431002677439627998124325------32011027843--
Q gi|254780170|r   48 AEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWT------LLREISLGLAF--  118 (342)
Q Consensus        48 s~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T------~~Rd~~~~v~F--  118 (342)
                      +|..+.|.++       ...|...+++ ..++++|. +..+.|.++.+|++|..+-..--+      ..-|....-+.  
T Consensus         7 ~ylGp~GsfS-------~~Aa~~~f~~-~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~DlL~~~~~~I   78 (267)
T 2qmw_A            7 YYLGPKGTFS-------YLACRQYFSE-NEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFA   78 (267)
T ss_dssp             EEECSTTSHH-------HHHHHHHCCT-TSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEE
T ss_pred             EECCCCCHHH-------HHHHHHHCCC-CCCEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEECCHHHHHHCCCCEE
T ss_conf             9838897199-------9999986476-7854650599999999997799888999871648138354343212479789


Q ss_pred             C-CCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHH---HHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE
Q ss_conf             5-32234402346302113475364178620343134269999---9999862998507874798999999873960299
Q gi|254780170|r  119 R-PITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTL---ADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY  194 (342)
Q Consensus       119 s-~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l---~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~  194 (342)
                      . ..+.--.+-++++++..+..+     ++|-     ++.+.+   .+|+..+.+  ++...++..++.+....+ ..|+
T Consensus        79 ~~e~~~~i~~~ll~~~~~~~~~I-----~~V~-----SHpqal~QC~~~l~~~~~--~~~~~~s~a~a~~~~~~~-~aai  145 (267)
T 2qmw_A           79 HGEIRLDINFALYGNGTDSISDI-----KKVY-----SIAPAISQTTNYIHQHQF--DYDYVDSTIQSLTKIENG-VAAI  145 (267)
T ss_dssp             EEEEEEECCEEEECCSSCCSTTC-----CEEE-----ECHHHHHHSHHHHHHTTC--EEEECSSHHHHHHTCBTT-EEEE
T ss_pred             EEEEEEEEEEHHHCCCCCCCCCC-----CEEE-----EECHHHHHHHHHHHHCCC--CEEEHHHHHHHHHHHCCC-CHHH
T ss_conf             99999877101132688763454-----0689-----754889999999987255--325348799999974236-0146


Q ss_pred             EE
Q ss_conf             82
Q gi|254780170|r  195 TG  196 (342)
Q Consensus       195 ~~  196 (342)
                      .+
T Consensus       146 as  147 (267)
T 2qmw_A          146 AP  147 (267)
T ss_dssp             EE
T ss_pred             HH
T ss_conf             77


No 107
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS}
Probab=77.87  E-value=3.5  Score=20.10  Aligned_cols=74  Identities=12%  Similarity=0.146  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHCC-------CCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCC-CCCCCCCEEEEEE
Q ss_conf             9999999999679-------8220259981431002677439627998124325320110278435-3223440234630
Q gi|254780170|r   61 VDFCRALSSAIFD-------DPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFR-PITYFDGQGFIMH  132 (342)
Q Consensus        61 VDl~raiAaal~g-------d~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs-~~~~~dgq~~lVr  132 (342)
                      ..|++++|.+--.       ...+|+|....+...+.+|.+|.+|+++.....+.......+.... .+.++++..+++.
T Consensus        32 ~~l~~~la~aF~k~~~~~~~tgi~V~~~~~GSg~~i~~l~~G~~Di~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~viv~  111 (294)
T 3cvg_A           32 SGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAFRDHFMLIG  111 (294)
T ss_dssp             HTHHHHHHHHHHHHHHSCC---CEEEEEECCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCEEECCCCCEEEEC
T ss_conf             88999999999975532368983899996882999999865898468631702368999738786523632567299988


Q ss_pred             CC
Q ss_conf             21
Q gi|254780170|r  133 KK  134 (342)
Q Consensus       133 k~  134 (342)
                      ..
T Consensus       112 ~~  113 (294)
T 3cvg_A          112 PP  113 (294)
T ss_dssp             CT
T ss_pred             CC
T ss_conf             98


No 108
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=77.84  E-value=3.5  Score=20.06  Aligned_cols=86  Identities=14%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEE--CCCCCCCCHHCCCCCCCCCCCCC-----------
Q ss_conf             099999999996798220259981-4310026774396279981--24325320110278435322344-----------
Q gi|254780170|r   60 DVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSR--NTDWTLLREISLGLAFRPITYFD-----------  125 (342)
Q Consensus        60 DVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~--~~T~T~~Rd~~~~v~Fs~~~~~d-----------  125 (342)
                      +.+.|..++.+...   +|+-+.. +..+-+.++..|+.|+++-  +..|+. |+..+. -+..-+|-+           
T Consensus       354 E~~KC~~ls~~~~~---~i~Cv~~~s~~~Ci~~I~~g~ADi~~lDg~~~y~A-~ky~L~-pv~aE~y~~~~~~~~~~~~~  428 (686)
T 2d3i_A          354 EKSKCDRWSVVSNG---DVECTVVDETKDCIIKIMKGEADAVALDGGLVYTA-GVCGLV-PVMAERYDDESQCSKTDERP  428 (686)
T ss_dssp             HHHHHHHHHHHTTT---SEEEEEESSHHHHHHHHHHTSCCBEEECHHHHHHH-HHTTCE-EEEEEECSCGGGC------C
T ss_pred             HHHHHHHHHHHCCC---CEEEEECCCHHHHHHHHHCCCCCEEEECCHHHHHH-HHCCCE-EEEEEECCCCCCCCCCCCCC
T ss_conf             89999999987089---73899479999999998769987899781887657-654988-87875126665533456766


Q ss_pred             ---CEEEEEECCCCCCCHHHHCCCCEEEE
Q ss_conf             ---02346302113475364178620343
Q gi|254780170|r  126 ---GQGFIMHKKKGISSVSQLSGASICVQ  151 (342)
Q Consensus       126 ---gq~~lVrk~~~i~s~~dL~G~~I~v~  151 (342)
                         ....+||+++. .++.+|.||+.|-.
T Consensus       429 ~~y~~VAVvkkd~~-~~~~~LrGkksCHt  456 (686)
T 2d3i_A          429 ASYFAVAVARKDSN-VNWNNLKGKKSCHT  456 (686)
T ss_dssp             CCEEEEEEEESSSC-CCTTSCTTSEEEES
T ss_pred             CCEEEEEEEECCCC-CCHHHHCCCCCCCC
T ss_conf             54069999844778-78678378976457


No 109
>3fd3_A Chromosome replication initiation inhibitor protein; structural genomics, LYSR, PSI-2, protein structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=75.52  E-value=4.1  Score=19.66  Aligned_cols=146  Identities=9%  Similarity=-0.056  Sum_probs=84.6

Q ss_pred             CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf             79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r   33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI  112 (342)
Q Consensus        33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~  112 (342)
                      |++||+++..+.-..        |   =.....++.++   -+.++++...+....+..|++|++|+.+.....   .+.
T Consensus         1 r~tlria~~~~sl~~--------w---l~P~L~~f~~~---~pi~l~l~~~~~~~~~~~l~~g~~D~aI~~~~~---~~~   63 (208)
T 3fd3_A            1 RVTLNIATNADSLGT--------W---FLDAVSKFTGG---SDYLVNIAVDDQDHTVEWLRGGRVLAAVTAHDK---PVQ   63 (208)
T ss_dssp             CCEEEEEECHHHHTT--------T---HHHHHHHHHHT---SSCEEEEEECCSSCHHHHHHTTSCSEEEESCCS---CCT
T ss_pred             CEEEEEEECHHHHHH--------H---HHHHHHHHHHH---CCCEEEEEEECCHHHHHHHHCCCEEEEEECCCC---CCC
T ss_conf             957899877387898--------8---99999999997---979799999456627888757975999983899---999


Q ss_pred             CCCCCCCCCCCCCCEEEEEECC------CCCCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf             0278435322344023463021------1347536417862034-31342699999999862998507874798999999
Q gi|254780170|r  113 SLGLAFRPITYFDGQGFIMHKK------KGISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAA  185 (342)
Q Consensus       113 ~~~v~Fs~~~~~dgq~~lVrk~------~~i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~a  185 (342)
                      .  +.+ .+.+-+...+++..+      ....+.+||.+...-. ..++.....................+++......+
T Consensus        64 ~--l~~-~~L~~~~~~~vasp~~~~~~~~~~~~~~dL~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (208)
T 3fd3_A           64 G--CRV-TPLGVLRYHATASPDFMARHFADGVTPAALARAPGLTFNQKDRLQASWIRTALGEDVSYPTHWLPSTDGFVKA  140 (208)
T ss_dssp             T--CEE-EEEEEEEEEEEECHHHHHHHCTTCSCHHHHTTSCEEESSTTCCHHHHHHHHHHSSCCCCCEEECCCHHHHHHH
T ss_pred             C--EEE-EEEEEEEEEEEECHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCHHHHHHH
T ss_conf             8--699-9946027999983499986379999999995086332256664113556641476654433788889999999


Q ss_pred             HHCCCEEEEEECC
Q ss_conf             8739602998250
Q gi|254780170|r  186 YRAHRCDAYTGDI  198 (342)
Q Consensus       186 l~~Gr~DA~~~D~  198 (342)
                      ..+|..=++.-+.
T Consensus       141 v~~G~Gia~lP~~  153 (208)
T 3fd3_A          141 SLAGMGWGLNPVQ  153 (208)
T ss_dssp             HHTTSCBEEEEHH
T ss_pred             HHHCCCEEECCHH
T ss_conf             9939947748599


No 110
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=75.15  E-value=4.2  Score=19.60  Aligned_cols=173  Identities=16%  Similarity=0.084  Sum_probs=86.4

Q ss_pred             EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC-CC-C-CCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEEC
Q ss_conf             0259981431002677439627998124325320110-27-8-4353223440234630211347536417862034313
Q gi|254780170|r   77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS-LG-L-AFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAG  153 (342)
Q Consensus        77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~-~~-v-~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~G  153 (342)
                      .++++.-.+++.-..|.+|++|+..-. ++...|-.. +. + +++..-+-.+.++++-++     .....+++|.+...
T Consensus        39 ~~~~v~~~P~~Ln~~l~~GelDva~iS-s~~y~~~~d~y~llp~~~i~s~G~V~sv~l~s~-----~p~~~~~~Ial~~~  112 (301)
T 2i6e_A           39 GVTAITGVPTQMNAALLSGEVDIANVS-AVEFIRHADTLAALPDFSVAVLGPVYSVNLFHT-----CPLPELRRVALTSQ  112 (301)
T ss_dssp             TCCCEECCHHHHHHHHHHSSCSEEEEE-HHHHHHTTTTEEEEEEEEEEESSCCSSEEEEES-----SCGGGCCEEEECTT
T ss_pred             CEEEEECCHHHHHHHHHCCCCCEEECC-HHHHHHCCCCEEECCCCEEEEECCCCCEEEEEC-----CCCCCCCEEEECCC
T ss_conf             768987898999999983998798728-999985528389858847998778778699947-----87200885883898


Q ss_pred             CCHHHHHH-HHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE--EEECCHHHHHHHHH------------CCCC-HHHCCC
Q ss_conf             42699999-99986299850787479899999987396029--98250479999983------------6780-010025
Q gi|254780170|r  154 TTTELTLA-DYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA--YTGDISALYALKLT------------NDRP-SEHVIL  217 (342)
Q Consensus       154 TT~e~~l~-~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA--~~~D~s~La~~~~~------------~~~p-~~~~il  217 (342)
                      |+|-..|- -.++..+...+.+.++...+   ....+.+||  +++|.. |.+....            +... ....++
T Consensus       113 s~TS~~Llrill~~~~~~p~~~~~~~~~~---~~~~~~~da~LlIGD~A-L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  188 (301)
T 2i6e_A          113 SAMSVALLEVLLRQKGLSPVLERAEGTAE---SLLAAGYDGVLRIGDDA-LREWYGVVGPLTPERTMTSLPHTGRGITVT  188 (301)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEECCSCHH---HHHTTTCSEEEEESHHH-HHHHHHHSCCCCSSSCGGGCCSEETTEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEECCCCHH---HHHCCCCCEEEECCHHH-HHHHHHCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf             87999999999996189853797688667---75134678689727898-764330243334321000001267884897


Q ss_pred             C-----CCCCCCC--EE-EECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             6-----4442371--01-00027775799998877443311212330152089886
Q gi|254780170|r  218 P-----DIISKSP--LA-PAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVS  265 (342)
Q Consensus       218 ~-----e~iskEP--lg-~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~  265 (342)
                      +     ...+.-|  +| .++|++-++    ..+...++.++-++|.  +|.++..
T Consensus       189 DLG~~W~~~TGlP~vfa~~vvrr~~~~----~~~l~~~l~~S~~~~~--~~~~e~~  238 (301)
T 2i6e_A          189 DLAQEWFDLTGHPFTFAVWAYRKDNPP----PAALLQAMREARRRGI--GHLAEVS  238 (301)
T ss_dssp             EHHHHHHHHHSSCEEEEEEEEETTSCC----CHHHHHHHHHHHHHHH--HTHHHHH
T ss_pred             EHHHHHHHHHCCCCEEEEEEEECCCCH----HHHHHHHHHHHHHHHH--HCHHHHH
T ss_conf             889999897799850434777268517----8999999999999987--5999999


No 111
>1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} SCOP: c.94.1.1
Probab=75.03  E-value=4  Score=19.69  Aligned_cols=30  Identities=3%  Similarity=-0.228  Sum_probs=18.1

Q ss_pred             CEEEECCHHHHHHHHHCCCEEEEEECCHHH
Q ss_conf             078747989999998739602998250479
Q gi|254780170|r  172 HPIVFERVEEIDAAYRAHRCDAYTGDISAL  201 (342)
Q Consensus       172 ~~v~~~~~~~a~~al~~Gr~DA~~~D~s~L  201 (342)
                      ....+.+.+..+++|.+|++|......+.+
T Consensus       214 ~~~~~~~~~~~~~al~~G~vD~~~~~~~~~  243 (547)
T 1vr5_A          214 VELRVLSNNVAVGMLMKGELDWSNFFLPGV  243 (547)
T ss_dssp             EEECCSCHHHHHHHHHHTSCCEECSCCTTH
T ss_pred             EEEEECCCHHHHHHHHCCCCCEECCCCHHH
T ss_conf             998724606778998606652440573356


No 112
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=73.69  E-value=4.5  Score=19.38  Aligned_cols=134  Identities=11%  Similarity=0.017  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEE-ECCCCCCHHHHHCCCEEEEEECCCCCCCC------HHCCCCCCCCCCCC-CCEEEEEEC
Q ss_conf             99999999967982202599-81431002677439627998124325320------11027843532234-402346302
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYL-PLNAKERFLALQSKQIDILSRNTDWTLLR------EISLGLAFRPITYF-DGQGFIMHK  133 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v-~~~~~~rf~aL~sG~vDil~~~~T~T~~R------d~~~~v~Fs~~~~~-dgq~~lVrk  133 (342)
                      ++.+.+-.++|   -+|+.+ .++....+++|.+|+||+..-...-+..-      +....++-. +++. ..+++.|++
T Consensus        25 ei~~~~Le~~G---y~V~~~~~~~~~~~~~al~~G~iDi~~E~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~vp~  100 (309)
T 1r9l_A           25 LLVSRALEKLG---YTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREG-VFVNGAAQGYLIDK  100 (309)
T ss_dssp             HHHHHHHHHTT---CEECCCEECCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEECS-CSEEEEEEEEEEEH
T ss_pred             HHHHHHHHHCC---CCEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCCEEEEC-CCCCCCCEEEEECH
T ss_conf             99999999869---964751478739999999869975998443461004656430444068703-45556620476324


Q ss_pred             CC----CCCCHHHHC---------------CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEC-CH----HHHHHHHHCC
Q ss_conf             11----347536417---------------862034313426999999998629985078747-98----9999998739
Q gi|254780170|r  134 KK----GISSVSQLS---------------GASICVQAGTTTELTLADYFKAHNMKYHPIVFE-RV----EEIDAAYRAH  189 (342)
Q Consensus       134 ~~----~i~s~~dL~---------------G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~-~~----~~a~~al~~G  189 (342)
                      -.    ++.+..++.               |+-++...+-..........+..++........ +.    .....++..+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ygl~~~~~~~~~s~~~~~~~~~~a~~~~  180 (309)
T 1r9l_A          101 KTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEG  180 (309)
T ss_dssp             HHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEEEECSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCC
T ss_conf             16765575407665345677651433333433223676301122166665430554312440467578999999864336


Q ss_pred             CEEEEEECCH
Q ss_conf             6029982504
Q gi|254780170|r  190 RCDAYTGDIS  199 (342)
Q Consensus       190 r~DA~~~D~s  199 (342)
                      +...+..-.+
T Consensus       181 ~~i~~~~w~p  190 (309)
T 1r9l_A          181 KPVFYYTWTP  190 (309)
T ss_dssp             CCCEEEEEES
T ss_pred             CCEEEEEECC
T ss_conf             7669996144


No 113
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=73.11  E-value=2.8  Score=20.73  Aligned_cols=129  Identities=7%  Similarity=-0.005  Sum_probs=64.2

Q ss_pred             CCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCC------CHHCC---C
Q ss_conf             8306889898801509999999999679822025998-143100267743962799812432532------01102---7
Q gi|254780170|r   46 GFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLL------REISL---G  115 (342)
Q Consensus        46 pfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~------Rd~~~---~  115 (342)
                      -++|..+.|.++       ..-|...++. ..++++| -++.+.|.++.+|++|..+=..--+.+      -|...   .
T Consensus         8 tiayLGp~GtfS-------~~Aa~~~f~~-~~~~~vp~~s~~evf~aV~~g~~d~gVvPIENS~~G~V~~t~D~L~~~~~   79 (313)
T 3mwb_A            8 TYTFLGPQGTFT-------EAALMQVPGA-ADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQE   79 (313)
T ss_dssp             EEEEESSTTSHH-------HHHHTTSTTG-GGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSC
T ss_pred             EEEECCCCCCHH-------HHHHHHHCCC-CCCEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCC
T ss_conf             799758997299-------9999974588-87447667999999999977998779997314566663778998651558


Q ss_pred             CCCC-CCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
Q ss_conf             8435-3223440234630211347536417862034313426999999998629985078747989999998739
Q gi|254780170|r  116 LAFR-PITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH  189 (342)
Q Consensus       116 v~Fs-~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G  189 (342)
                      +.-. ..++--.+.++.+++..+   +++  ++|....-  ....-.+|++.+.+..+++...+...+...+...
T Consensus        80 l~I~~E~~l~I~h~Ll~~~~~~l---~~I--k~V~SHpq--al~QC~~fL~~~~p~~~~~~~~sta~aA~~~~~~  147 (313)
T 3mwb_A           80 LRIIREALVPITFVLVARPGVEL---SDI--KRISTHGH--AWAQCRLWVDEHLPNADYVPGSSTAASAMGLLED  147 (313)
T ss_dssp             CEEEEEEEEECCCEEEECTTCCG---GGC--SEEEECHH--HHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTST
T ss_pred             CEEEEEEEEEEEHHHHHCCCCCH---HHC--EEEEECHH--HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC
T ss_conf             56999887765455563689987---887--48995589--9999999987248862799617679999999864


No 114
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=70.89  E-value=5.2  Score=18.97  Aligned_cols=135  Identities=14%  Similarity=0.071  Sum_probs=73.6

Q ss_pred             HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCCCCCEEEECCCCCHH
Q ss_conf             9999999862998507874798999999873960299825047999998367800100256-444237101000277757
Q gi|254780170|r  158 LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIISKSPLAPAIIQGDTE  236 (342)
Q Consensus       158 ~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~iskEPlg~avr~gD~~  236 (342)
                      ..+.+.++..|+++-.-+++-.+++-.....|.||++.++.+-+...    ..|....-+. ....+.+..........+
T Consensus       133 ~~~~~lL~~~gi~~i~Ap~ea~aq~a~l~~~g~vd~v~s~D~D~l~~----g~~~v~~~l~~~~~~~~~~~~~~~~~~~~  208 (340)
T 1b43_A          133 EDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLF----GAPRLVRNLTITGKRKLPGKNVYVEIKPE  208 (340)
T ss_dssp             HHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHT----TCSEEEESTTTCEEEECTTSSCEEEECCE
T ss_pred             HHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCEEEEEECCCCHHHC----CCCCEEEEEECCCCCCCCCCCCCCCCCEE
T ss_conf             99999999879778980828999999999759858999237213211----46641788675776446676653323128


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHC
Q ss_conf             999988774433112123301520898862267177887623588765033379986799999997186999878864
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDRNL  314 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~rnl  314 (342)
                      |.+..       -.-|++|+|....-.         +.=+.|.+  -+..---|+.+.=|++.|++-||..++|+...
T Consensus       209 ~~~~~-------~v~~~lgl~~~q~id---------~all~G~d--yn~~gi~giG~ktA~~li~~~~~~~~~~~~~~  268 (340)
T 1b43_A          209 LIILE-------EVLKELKLTREKLIE---------LAILVGTD--YNPGGIKGIGLKKALEIVRHSKDPLAKFQKQS  268 (340)
T ss_dssp             EEEHH-------HHHHHHTCCHHHHHH---------HHHHHCCT--TSTTCSTTCCHHHHHHHHHTCSSGGGGTGGGC
T ss_pred             EEEHH-------HHHHHCCCCHHHHHH---------HHHHCCCC--CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCC
T ss_conf             97299-------978863999999989---------99971875--68555798279999999999599999987501


No 115
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=70.50  E-value=2.5  Score=21.03  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCC---CH-HHHHCCCE-EEEEECC
Q ss_conf             0999999999967982202599814310---02-67743962-7998124
Q gi|254780170|r   60 DVDFCRALSSAIFDDPSKIQYLPLNAKE---RF-LALQSKQI-DILSRNT  104 (342)
Q Consensus        60 DVDl~raiAaal~gd~~kVe~v~~~~~~---rf-~aL~sG~v-Dil~~~~  104 (342)
                      +-.+.+.+.+..+   .+|+++.+++.+   .+ ..+.+|+. ||+..+.
T Consensus        57 ~~~~~~~~e~~~g---i~v~~~~~~~~~~~~kl~~~~asg~~PDi~~~~~  103 (535)
T 3omb_A           57 NMQWAKDLEADCD---CKIEWQEVTREAWAQQKNATLASGDIADVNLNGY  103 (535)
T ss_dssp             GCHHHHHHHHHHT---SEEEEEEEEHHHHHHHHHHHHHHTCCCSEEESSC
T ss_pred             HHHHHHHHHHCCC---CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             9999999986649---7899997892689999999997899886999893


No 116
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=68.19  E-value=3.4  Score=20.17  Aligned_cols=54  Identities=15%  Similarity=0.240  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH
Q ss_conf             79999887744331121233015208988622671778876235887650333799867999
Q gi|254780170|r  236 EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY  297 (342)
Q Consensus       236 ~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~  297 (342)
                      +||.--.|+..-+  ||..|||.+.|.........|.+..+.      .+.+.||++.+|..
T Consensus        16 ~~R~~~gltq~el--A~~~gvs~~~vs~~E~g~~~Ps~~~l~------~ia~~l~vs~~~Ll   69 (114)
T 3op9_A           16 RLKKEHGLKNHQI--AELLNVQTRTVAYYMSGETKPDIEKLI------RLATYFHLSIDELV   69 (114)
T ss_dssp             HHHHHHTCCHHHH--HHHHTSCHHHHHHHHHTSSCCCHHHHH------HHHHHHTCCHHHHH
T ss_pred             HHHHHCCCCHHHH--HHHHCCCCCHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHH
T ss_conf             9999859999999--761088732799996587899999999------99999599899992


No 117
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=67.30  E-value=6.2  Score=18.50  Aligned_cols=133  Identities=10%  Similarity=0.041  Sum_probs=59.7

Q ss_pred             CEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCC------CCCCCHHCCCCCC-
Q ss_conf             306889898801509999999999679822025998-14310026774396279981243------2532011027843-
Q gi|254780170|r   47 FAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTD------WTLLREISLGLAF-  118 (342)
Q Consensus        47 fs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T------~T~~Rd~~~~v~F-  118 (342)
                      .+|..+.|.++       . .|+..++     +.+| -++.+.|.++.+|++|..+=..-      ++..-|....-++ 
T Consensus         9 IaylGp~GtfS-------~-~Aa~~~~-----~~~~~~si~~v~~av~~g~~d~gVvPiENS~~G~V~~t~D~L~~~~l~   75 (283)
T 2qmx_A            9 IAYQGEPGAYS-------E-IAALRFG-----EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVV   75 (283)
T ss_dssp             EEEESCTTSHH-------H-HHHHHHS-----EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEE
T ss_pred             EEEECCCCCHH-------H-HHHHHHC-----CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCE
T ss_conf             99989997389-------9-9999847-----147889999999999779987799975042323566788686518980


Q ss_pred             -CC-CCCCCCEEEEEECCCCCCCHHHHCC-CCEEEEECCCHHHHH---HHHHHHCCCCCCEEEECCHHHHHHHHHC---C
Q ss_conf             -53-2234402346302113475364178-620343134269999---9999862998507874798999999873---9
Q gi|254780170|r  119 -RP-ITYFDGQGFIMHKKKGISSVSQLSG-ASICVQAGTTTELTL---ADYFKAHNMKYHPIVFERVEEIDAAYRA---H  189 (342)
Q Consensus       119 -s~-~~~~dgq~~lVrk~~~i~s~~dL~G-~~I~v~~GTT~e~~l---~~~~~~~~~~~~~v~~~~~~~a~~al~~---G  189 (342)
                       .. .+.--.+.++++++..      ++. ++|-     ++.+.+   +.|++++ ...+.+.+.+...+...+..   .
T Consensus        76 I~~E~~l~I~h~Ll~~~~~~------~~~I~~V~-----SHpqal~QC~~~l~~~-~~~~~~~~~sta~aa~~~~~~~~~  143 (283)
T 2qmx_A           76 ILAETFVKVEHCLLGLPGAS------VETATKAM-----SHPQALVQCHNFFATH-PQIRAEAAYDTAGSAKMVAESRDK  143 (283)
T ss_dssp             EEEEEEEECCCEEEECSSCC------TTTCCEEE-----ECHHHHHHTHHHHHHC-TTSEEEECSCHHHHHHHHHHTTCT
T ss_pred             EEEEEEEEHHHHHHCCCCCC------HHHCCEEE-----CCHHHHHHHHHHHHHC-CCCCEEEECCCHHHHHHHHHHCCC
T ss_conf             78888864213855378999------78750110-----3889999999989867-986148834879999998751666


Q ss_pred             CEEEEEECCHHHHHHHHH
Q ss_conf             602998250479999983
Q gi|254780170|r  190 RCDAYTGDISALYALKLT  207 (342)
Q Consensus       190 r~DA~~~D~s~La~~~~~  207 (342)
                      .+-|+.+.   +++....
T Consensus       144 ~~AAI~s~---~aa~~yg  158 (283)
T 2qmx_A          144 SALAIASK---RAGELYG  158 (283)
T ss_dssp             TEEEEECH---HHHHHTT
T ss_pred             CEEECCHH---HHHHHHC
T ss_conf             40010418---8987718


No 118
>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=66.64  E-value=6.4  Score=18.42  Aligned_cols=104  Identities=11%  Similarity=-0.018  Sum_probs=50.5

Q ss_pred             EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHHHHHHHH---
Q ss_conf             7874798999999873960299825047999998367800100256444237101000277757---9999887744---
Q gi|254780170|r  173 PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNIVSWTHY---  246 (342)
Q Consensus       173 ~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~V~W~~~---  246 (342)
                      ...+....+....+..|++.....-.............+....+.++.-..-+.+.++.++-.+   =..+++|.+-   
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~I~~~s~~~eaA~~Fi~fl~s~e~  289 (355)
T 3c9h_A          210 VKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEG  289 (355)
T ss_dssp             CEEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEEECCSSCEEEECCEEEEETTBSCHHHHHHHHHHHHSHHH
T ss_pred             CCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHH
T ss_conf             76656778999887526750799841188887764188716993258846633346887899988999999999779999


Q ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             3311212330152089886226717788762
Q gi|254780170|r  247 AMVTAEELGITQKNINQVSKDTTNPDVQRFL  277 (342)
Q Consensus       247 ali~Aee~git~~nv~~~~~~s~~p~i~r~l  277 (342)
                      --+.||+.|+-..+-+.. .....++..+..
T Consensus       290 Q~~~a~~~~~~p~~~~v~-~~~~~~~~~~~~  319 (355)
T 3c9h_A          290 QTIMARQLQIPAVSPEVA-GENTANTMQAIH  319 (355)
T ss_dssp             HHHHHHHSCCCBCCTTCC-SSSBHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCC-CCCCCCHHHHHC
T ss_conf             999998378677885557-864430122201


No 119
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3- phenylpyruvate, PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=62.86  E-value=7.5  Score=17.97  Aligned_cols=111  Identities=5%  Similarity=-0.061  Sum_probs=51.1

Q ss_pred             CEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCC------CCHHCCCCCCCCCCCCCC-------EEEEEECCCCCCCHH
Q ss_conf             20259981-4310026774396279981243253------201102784353223440-------234630211347536
Q gi|254780170|r   76 SKIQYLPL-NAKERFLALQSKQIDILSRNTDWTL------LREISLGLAFRPITYFDG-------QGFIMHKKKGISSVS  141 (342)
Q Consensus        76 ~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~------~Rd~~~~v~Fs~~~~~dg-------q~~lVrk~~~i~s~~  141 (342)
                      ..+++++. +..+.|.++++|. |..+=..--+.      .-|..  ++.... +--+       +.+++.++..   ++
T Consensus        36 ~~~~~~~~~si~~vf~av~~g~-d~gVvPIENS~~G~V~~tlD~L--~~~~~l-~i~~E~~l~I~~~Ll~~~~~~---~~  108 (329)
T 3luy_A           36 QGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDAL--IDAKDL-VGFARVGVNVEFDAYVAQGAD---PA  108 (329)
T ss_dssp             TCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHH--HTCSSC-EEEEEEEEECCCEEEEETTCC---GG
T ss_pred             CCCCEEECCCHHHHHHHHHCCC-CEEEEEEECCCCEEECCHHHHH--HCCCCE-EEEEEECCCEEEEHHCCCCCC---CC
T ss_conf             7631364499999999974699-7699997355837673420376--456880-899997454551001078888---55


Q ss_pred             HHCCCCEEEEECCCHHHHH---HHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH
Q ss_conf             4178620343134269999---9999862998507874798999999873960299825047999998
Q gi|254780170|r  142 QLSGASICVQAGTTTELTL---ADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKL  206 (342)
Q Consensus       142 dL~G~~I~v~~GTT~e~~l---~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~  206 (342)
                      +.  ++|-     ++.+.|   ++|++++++  +.+.+.+...+.+....+ +.|+.+.   +++...
T Consensus       109 ~I--k~Vy-----SHPqAl~QC~~~L~~~~~--~~~~~~sta~aa~~~~~~-~aAI~s~---~aae~y  163 (329)
T 3luy_A          109 EA--RIAT-----AHPHGLAQCKRFIAEHRL--STQPATSNAAACRDLIPG-EIAFGPA---ICGELY  163 (329)
T ss_dssp             GC--CEEE-----ECHHHHHHTHHHHHHTTC--EEEECSSHHHHHHTCCTT-EEEEECT---THHHHS
T ss_pred             CE--EEEE-----ECHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCC-CCCCCHH---HHHHHH
T ss_conf             40--6999-----524699999999997587--554525567777654213-3220438---899987


No 120
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=61.74  E-value=7.9  Score=17.84  Aligned_cols=146  Identities=14%  Similarity=0.154  Sum_probs=79.9

Q ss_pred             CCCCEEECCCCCEE-EEHH--HHHHHHHHHHCCCCCEEEEEECCCCCCHHH----HHCCCEEEEEE-CCCCCCCCHHCCC
Q ss_conf             98830688989880-1509--999999999679822025998143100267----74396279981-2432532011027
Q gi|254780170|r   44 LVGFAEVKANGDWK-GFDV--DFCRALSSAIFDDPSKIQYLPLNAKERFLA----LQSKQIDILSR-NTDWTLLREISLG  115 (342)
Q Consensus        44 ~ppfs~~d~~G~~~-GfDV--Dl~raiAaal~gd~~kVe~v~~~~~~rf~a----L~sG~vDil~~-~~T~T~~Rd~~~~  115 (342)
                      .||+.-.+.-.-|. |..=  ++++.|+... .+...++.+...+.+-...    +..+.+|++++ +.|-..=|+.   
T Consensus         5 ~~~~~~~~~p~i~~~~~srL~~l~~~i~~e~-~~~a~i~v~~~~~edav~~~~~~~~~~~~DviISRG~ta~~Ir~~---   80 (225)
T 2pju_A            5 HPPRLNDDKPVIWTVSVTRLFELFRDISLEF-DHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSR---   80 (225)
T ss_dssp             --------CCEEEEECCHHHHHHHHHHHTTT-TTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTT---
T ss_pred             CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHH---
T ss_conf             9997788998899986799999999999974-467569998274789999999998649986999685689999985---


Q ss_pred             CCCCCCCCCCCEEEEEECC-CC-CCCHHHH--CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHH---HHHHC
Q ss_conf             8435322344023463021-13-4753641--7862034313426999999998629985078747989999---99873
Q gi|254780170|r  116 LAFRPITYFDGQGFIMHKK-KG-ISSVSQL--SGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEID---AAYRA  188 (342)
Q Consensus       116 v~Fs~~~~~dgq~~lVrk~-~~-i~s~~dL--~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~---~al~~  188 (342)
                      ++.  |.      +.++-. -+ ...+...  -+.+|++..=...-..+..+..--+++++...|.+.+++.   ..+..
T Consensus        81 ~~i--PV------VeI~vs~~Dil~aL~~a~~~~~kIavVgf~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~  152 (225)
T 2pju_A           81 LSV--PV------ILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA  152 (225)
T ss_dssp             CSS--CE------EEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCC--CE------EEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             899--88------9970787689999999997589889993764036999999996994499996688999999999998


Q ss_pred             CCEEEEEECCHHH
Q ss_conf             9602998250479
Q gi|254780170|r  189 HRCDAYTGDISAL  201 (342)
Q Consensus       189 Gr~DA~~~D~s~L  201 (342)
                      ..||++++|....
T Consensus       153 ~G~~vVVG~~~~~  165 (225)
T 2pju_A          153 NGTEAVVGAGLIT  165 (225)
T ss_dssp             TTCCEEEESHHHH
T ss_pred             CCCCEEECCHHHH
T ss_conf             6997999885899


No 121
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=58.81  E-value=8.9  Score=17.52  Aligned_cols=171  Identities=10%  Similarity=0.043  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECC--CCCCCCHHCCCCCCCC-----------------
Q ss_conf             99999999996798220259981-431002677439627998124--3253201102784353-----------------
Q gi|254780170|r   61 VDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNT--DWTLLREISLGLAFRP-----------------  120 (342)
Q Consensus        61 VDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~--T~T~~Rd~~~~v~Fs~-----------------  120 (342)
                      -.-|..++..+..   +++-+.. +..+-+.+++.|+.|+++-.-  .|+. +...+.--+..                 
T Consensus       355 ~~KC~~~s~~~~p---~i~Cv~~~s~~~Cm~~I~~g~ADi~~lD~~~~y~A-~k~~L~Pv~aE~y~~~~~~~~~~~~~~~  430 (689)
T 1blf_A          355 QKKCQQWSQQSGQ---NVTCATASTTDDCIVLVLKGEADALNLDGGYIYTA-GKCGLVPVLAENRKSSKHSSLDCVLRPT  430 (689)
T ss_dssp             HHHHHHHHHHTTS---SEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHH-HTTTCEEEEEEECCCSSCSSSCTTTSCC
T ss_pred             HHHHHHHHHHCCC---CEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH-HHCCCEEEHHHHCCCCCCCCCCCCCCCC
T ss_conf             9999999997189---74899469999999998769987897370877656-5449885001213556666554111466


Q ss_pred             CCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHHHHH-HHHHHHCC--------------CCC-------C-----
Q ss_conf             22344023463021134753641786203431-34269999-99998629--------------985-------0-----
Q gi|254780170|r  121 ITYFDGQGFIMHKKKGISSVSQLSGASICVQA-GTTTELTL-ADYFKAHN--------------MKY-------H-----  172 (342)
Q Consensus       121 ~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e~~l-~~~~~~~~--------------~~~-------~-----  172 (342)
                      ..||  ...+|+|++...++.+|.||+.|-.. +.+.--++ -.++..++              +..       +     
T Consensus       431 ~~y~--aVAvvkk~~~~~~~~~LkGkksCHtg~~~~aGw~~P~g~L~~~~~~~~~~~fF~~sC~pg~~~~s~lc~lc~g~  508 (689)
T 1blf_A          431 EGYL--AVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGD  508 (689)
T ss_dssp             CCEE--EEEEEETTSTTCCSGGGTTSEEEESCTTCTTTTHHHHHHHHHHHTCSCGGGTSSEEECTTSCTTSTTSTTCCCS
T ss_pred             CCEE--EEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf             6427--99996278776637662688652358898443011367661588876622122565278988765321121488


Q ss_pred             -----------EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH--------HCCCCHHHCCCCC-------------C
Q ss_conf             -----------7874798999999873960299825047999998--------3678001002564-------------4
Q gi|254780170|r  173 -----------PIVFERVEEIDAAYRAHRCDAYTGDISALYALKL--------TNDRPSEHVILPD-------------I  220 (342)
Q Consensus       173 -----------~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~--------~~~~p~~~~il~e-------------~  220 (342)
                                 --.|-.+.-+++=|..|.-|.-....+.+.-.-.        ..-+++||.+|=.             .
T Consensus       509 ~~~~~~C~~~~~~~Y~Gy~GA~rCL~eg~GDVAFv~~~tv~~~~~g~~~~~wa~~l~~~d~~lLCpdG~r~~v~~~~~C~  588 (689)
T 1blf_A          509 DQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLNREDFRLLCLDGTRKPVTEAQSCH  588 (689)
T ss_dssp             SSCCSTTCSSTTSTTCHHHHHHHHHHTTSSSEEEEEHHHHHHTSTTSCCSTTTTTCCGGGEEEECTTSCEEETTCCSSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             65555555677777655565114220388414673152066524875542134416845507888999837665664543


Q ss_pred             CCCCCEEEECCCCCHHH
Q ss_conf             42371010002777579
Q gi|254780170|r  221 ISKSPLAPAIIQGDTEW  237 (342)
Q Consensus       221 iskEPlg~avr~gD~~w  237 (342)
                      +.+-|-..+|-+.|..+
T Consensus       589 l~~vp~~~vv~r~~~~~  605 (689)
T 1blf_A          589 LAVAPNHAVVSRSDRAA  605 (689)
T ss_dssp             SEEECCCEEEECTTTHH
T ss_pred             CCCCCCCEEEECCCCCH
T ss_conf             42467734897788638


No 122
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=55.90  E-value=9.9  Score=17.22  Aligned_cols=88  Identities=11%  Similarity=0.030  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEEC--CCCCCCCHHCCCCCCCCCCCC------------
Q ss_conf             099999999996798220259981-43100267743962799812--432532011027843532234------------
Q gi|254780170|r   60 DVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRN--TDWTLLREISLGLAFRPITYF------------  124 (342)
Q Consensus        60 DVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~--~T~T~~Rd~~~~v~Fs~~~~~------------  124 (342)
                      +-+.|..++++...   +++-+.. +..+-+.++..|++|+++-.  ..|+. ++..+.--....|..            
T Consensus       351 E~~KC~~ls~~~~~---~i~Cv~~~s~~~Cm~~I~~g~ADi~~lDg~~~y~A-~ky~L~pil~E~y~~~~~~~~~~~~~~  426 (687)
T 3mc2_A          351 ERTKCDQWSAVSGG---ALACATEETPEDCIAATMKGEADAMSLDGGFAYVA-GHCGLVPVLAENYLSTHSSGRLGSKCV  426 (687)
T ss_dssp             HHHHHHHHHHHTTT---SEEEEEESSHHHHHHHHHHTSSCBEEECHHHHHHH-HHTTCEEEEECCBCCCSCSSCCSTTST
T ss_pred             HHHHHHHHHHHHCC---CEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             99999999997378---87999589999999998769987898574889888-765985654000046665544553102


Q ss_pred             ------CCEEEEEECCCCCCCHHHHCCCCEEEE
Q ss_conf             ------402346302113475364178620343
Q gi|254780170|r  125 ------DGQGFIMHKKKGISSVSQLSGASICVQ  151 (342)
Q Consensus       125 ------dgq~~lVrk~~~i~s~~dL~G~~I~v~  151 (342)
                            ....-+|++++...++++|.||+.|-.
T Consensus       427 ~~~~~~y~aVAVvkk~s~~~~~~~LrGkksCHt  459 (687)
T 3mc2_A          427 NAPLEGYYVVAVVKKSDVGITWKSLQGKKSCHT  459 (687)
T ss_dssp             TCCCCCEEEEEEEESSCSCCCTTCCTTSCEEES
T ss_pred             CCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCC
T ss_conf             677664048999517876665677468843245


No 123
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=55.27  E-value=8.8  Score=17.55  Aligned_cols=55  Identities=5%  Similarity=0.062  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf             999988774433112123301520898862267177887623588765033379986799999
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRI  299 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~  299 (342)
                      ++.--.|+...  .|+.+||+.+.|.........|....++      .+...||.+.+|-.+.
T Consensus        16 ~r~~~gltq~~--lA~~lgvs~~~is~~e~G~~~~s~~~~~------~la~~lgvs~~~ll~~   70 (94)
T 2ict_A           16 SLDELNVSLRE--FARAMEIAPSTASRLLTGKAALTPEMAI------KLSVVIGSSPQMWLNL   70 (94)
T ss_dssp             HHHHHTCCHHH--HHHHHTCCHHHHHHHHHTSSCCCHHHHH------HHHHHTCSCHHHHHHH
T ss_pred             HHHHCCCCHHH--HHHHCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHCC
T ss_conf             99996999999--9998496389986987276447299999------9999999099999743


No 124
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=54.18  E-value=11  Score=17.04  Aligned_cols=136  Identities=7%  Similarity=-0.033  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCCC-CCC--CCCCCCCCEEEEEECC-CC
Q ss_conf             9999999996798220259981431002677439-62799812432532011027-843--5322344023463021-13
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK-QIDILSRNTDWTLLREISLG-LAF--RPITYFDGQGFIMHKK-KG  136 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~~-v~F--s~~~~~dgq~~lVrk~-~~  136 (342)
                      +++++..++-+   .+|+++...+......++.| ..|+.+....-..+.-...+ .+.  ..++......+.+.++ ..
T Consensus        16 ~l~~~Fek~tG---i~V~~~~g~sg~l~~~i~~g~~~D~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   92 (231)
T 1atg_A           16 QLAGQFAKQTG---HAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLV   92 (231)
T ss_dssp             HHHHHHHHHHC---CCEEEEEECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEESSTTTS
T ss_pred             HHHHHHHHHHC---CEEEEEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCCCCEEEEECCEEEEEECCCCCC
T ss_conf             99999998529---889999888899999998499984999666666788986144234642676302289862477778


Q ss_pred             CCCHHHHCC---CCEEEEECCCH--HHHHHHHHHHCCC------CCCEEEECCHHHHHHHHHCCCEEEEEECCHH
Q ss_conf             475364178---62034313426--9999999986299------8507874798999999873960299825047
Q gi|254780170|r  137 ISSVSQLSG---ASICVQAGTTT--ELTLADYFKAHNM------KYHPIVFERVEEIDAAYRAHRCDAYTGDISA  200 (342)
Q Consensus       137 i~s~~dL~G---~~I~v~~GTT~--e~~l~~~~~~~~~------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~  200 (342)
                      ..++++|..   ++|++....+.  -..........+.      ..+++...+..+....+..|++|+.+.-.+.
T Consensus        93 ~~~~~~l~~~~~~~i~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~s~  167 (231)
T 1atg_A           93 DNQGKVLAGNGWRHIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVALAQ  167 (231)
T ss_dssp             CTTSGGGGSSSCSCEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHHTTSSSEEEEEGGG
T ss_pred             CCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHCEEECCCCHHHHHHHHCCCCCEEEEHHHH
T ss_conf             886888277547879996898782068999999872822555543106210231478888870775345105778


No 125
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=53.75  E-value=11  Score=17.00  Aligned_cols=22  Identities=9%  Similarity=0.297  Sum_probs=13.4

Q ss_pred             EEECCCCCCCHHHHCCCCEEEE
Q ss_conf             6302113475364178620343
Q gi|254780170|r  130 IMHKKKGISSVSQLSGASICVQ  151 (342)
Q Consensus       130 lVrk~~~i~s~~dL~G~~I~v~  151 (342)
                      +|++++.+.++.+|.||+.|-.
T Consensus       440 Vvkk~s~~~~~~~LrGKksCHt  461 (691)
T 1cb6_A          440 VVRRSDTSLTWNSVKGKKSCHT  461 (691)
T ss_dssp             EEESSCTTCCGGGCTTSEEEES
T ss_pred             EECCCCCCCCHHHHCCCCCCCC
T ss_conf             8506876650555058865456


No 126
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=49.93  E-value=12  Score=16.62  Aligned_cols=194  Identities=11%  Similarity=0.094  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHC---CCEEEEEECCCCCCCCHHC----------------------C-
Q ss_conf             9999999996798220259981431-00267743---9627998124325320110----------------------2-
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPLNAK-ERFLALQS---KQIDILSRNTDWTLLREIS----------------------L-  114 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~~~~-~rf~aL~s---G~vDil~~~~T~T~~Rd~~----------------------~-  114 (342)
                      +++++..++-+   .+|+++..+.. ..+..+++   +.+||+..+.++. .|-..                      . 
T Consensus        18 ~ii~~Fek~~g---i~V~~~~~~~~~~~~~~~~a~~~~~~Dvv~~~~~~~-~~~~~~g~~~~ld~~~~~~~~~~~~~~~~   93 (325)
T 1pot_A           18 GLLEQFTKETG---IKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYV-DKMRKEGMIQKIDKSKLTNFSNLDPDMLN   93 (325)
T ss_dssp             THHHHHHHHHC---EEEEEEEESCHHHHHHHHTTCSSSCSSBBCCBGGGH-HHHHHHTCBCCCCTTSCTTGGGBCGGGSC
T ss_pred             HHHHHHHHHHC---CEEEEEECCCHHHHHHHHHHCCCCCCEEEEECHHHH-HHHHHCCCCCCCCHHCCCCCCCCCHHHHC
T ss_conf             99999999969---989999689999999999806999984999486899-99997695213550004450002877750


Q ss_pred             -----CCCCCCCCCCCCEEEEEECC----CCCCCHHHHCCC----CEEEEECCC-----------------HHHHHHHHH
Q ss_conf             -----78435322344023463021----134753641786----203431342-----------------699999999
Q gi|254780170|r  115 -----GLAFRPITYFDGQGFIMHKK----KGISSVSQLSGA----SICVQAGTT-----------------TELTLADYF  164 (342)
Q Consensus       115 -----~v~Fs~~~~~dgq~~lVrk~----~~i~s~~dL~G~----~I~v~~GTT-----------------~e~~l~~~~  164 (342)
                           +=.+..|+.+...++..+++    .+++++.+|-..    +++......                 .+......+
T Consensus        94 ~~~~~g~~~~vP~~~~~~~l~Yn~d~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (325)
T 1pot_A           94 KPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAY  173 (325)
T ss_dssp             CTTSTTCSSCEEEEEEEEEEEEETTTSCTTTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEEEECCEEECHHHCCCCCCCCHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             44589983699997541212321644288765768884587756975014762017899999862353457757777899


Q ss_pred             -HHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHH
Q ss_conf             -862998507874798999999873960299825047999998367800100256444237101000277757---9999
Q gi|254780170|r  165 -KAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNI  240 (342)
Q Consensus       165 -~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~  240 (342)
                       ....+......+.. .+..+++.+|++.....-......... ...|-.+.+.++.-.--+-+.+|.++=++   =..+
T Consensus       174 ~~~~~~~~~~~~~~~-~~~~~~~~~Ge~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~~~i~k~s~~~e~A~~f  251 (325)
T 1pot_A          174 NELKKLMPNVAAFNS-DNPANPYMEGEVNLGMIWNGSAFVARQ-AGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKL  251 (325)
T ss_dssp             HHHHHTGGGEEEECS-SCTHHHHHTTSCSEEEEEHHHHHHHHT-TSCCEEEECCTTCCEEEEEEEBCBTTCTTHHHHHHH
T ss_pred             HHHHHHHHCCCCCCC-HHHHHHHHCCCCCEEEEECHHHHHHHH-CCCCEEEEECCCCCEEEEEEEEEECCCCCHHHHHHH
T ss_conf             999886220220140-567788760652458861066899974-279803994368860544546877899998999999


Q ss_pred             HHHHHH---HHHHHHHHHCCHHHH
Q ss_conf             887744---331121233015208
Q gi|254780170|r  241 VSWTHY---AMVTAEELGITQKNI  261 (342)
Q Consensus       241 V~W~~~---ali~Aee~git~~nv  261 (342)
                      ++|.+-   ....+|+.|.-..|.
T Consensus       252 i~~l~S~e~q~~~~~~~g~~p~~~  275 (325)
T 1pot_A          252 INFLLRPDVAKQVAETIGYPTPNL  275 (325)
T ss_dssp             HHHHHSHHHHHHHHHHHCCCCSBS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             999834999999999738888687


No 127
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=48.43  E-value=13  Score=16.47  Aligned_cols=19  Identities=11%  Similarity=-0.085  Sum_probs=14.0

Q ss_pred             HHHHHHHHCCCEEEEEECC
Q ss_conf             9999998739602998250
Q gi|254780170|r  180 EEIDAAYRAHRCDAYTGDI  198 (342)
Q Consensus       180 ~~a~~al~~Gr~DA~~~D~  198 (342)
                      +.+...+....||+++.-.
T Consensus       156 e~A~~Kl~~K~~D~IVAN~  174 (226)
T 1u7z_A          156 EYARQKRIRKNLDLICAND  174 (226)
T ss_dssp             HHHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEECC
T ss_conf             8999999853999899605


No 128
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=48.34  E-value=12  Score=16.69  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             HHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHH
Q ss_conf             212330152089886226717788762358876503337998679999999
Q gi|254780170|r  251 AEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIR  301 (342)
Q Consensus       251 Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~  301 (342)
                      |+..||++..|..+.....+|.+..|.      .+.+.||++..+...-+.
T Consensus        34 A~~~gvs~~~is~~E~g~~~~~~~~l~------~la~~l~v~~~~l~~~~~   78 (83)
T 3f6w_A           34 AARLGRPQSFVSKTENAERRLDVIEFM------DFCRGIGTDPYALLSKLE   78 (83)
T ss_dssp             HHHHTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTCCHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHHHHH
T ss_conf             989738999999998799899999999------999995999999985301


No 129
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=45.48  E-value=14  Score=16.18  Aligned_cols=135  Identities=7%  Similarity=-0.104  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCCCCC-CCCC--CCCCCEEEEEECCC--
Q ss_conf             9999999996798220259981431002677439-6279981243253201102784-3532--23440234630211--
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK-QIDILSRNTDWTLLREISLGLA-FRPI--TYFDGQGFIMHKKK--  135 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~~v~-Fs~~--~~~dgq~~lVrk~~--  135 (342)
                      +++++.-++-+   .+|+++.....+....++.| ..|+++....-..++....+.. ...+  .++....+.+.+..  
T Consensus        39 ~i~~~Fe~~tg---i~V~~~~~gs~~l~~~i~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (253)
T 3gzg_A           39 EAATAYEKATG---TPVRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLVAPASSKL  115 (253)
T ss_dssp             HHHHHHHHHHS---CCEEEEEECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEEEETTCCC
T ss_pred             HHHHHHHHHHC---CEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             99999988429---779999787599999997399965999675767888751575222430000146300244213323


Q ss_pred             -----CCCCHHHHC--CCCEEEEECCCHH--HHHHHHHHHCCC----CCCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf             -----347536417--8620343134269--999999986299----850787479899999987396029982504
Q gi|254780170|r  136 -----GISSVSQLS--GASICVQAGTTTE--LTLADYFKAHNM----KYHPIVFERVEEIDAAYRAHRCDAYTGDIS  199 (342)
Q Consensus       136 -----~i~s~~dL~--G~~I~v~~GTT~e--~~l~~~~~~~~~----~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s  199 (342)
                           ...++.++.  +.++++..-.+.-  ......+...+.    ......++........+..|++|+.+...+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~g~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  192 (253)
T 3gzg_A          116 RVDPRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGS  192 (253)
T ss_dssp             CCCTTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred             CCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEHHH
T ss_conf             45865403288615888759996898883599999999995724441332110455540035421465537750434


No 130
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=45.06  E-value=12  Score=16.75  Aligned_cols=68  Identities=12%  Similarity=0.153  Sum_probs=45.3

Q ss_pred             EEEEEEECCCCCCEE-ECCCCCEEEEHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCC
Q ss_conf             499987178988306-889898801509-----9999999996798220259981431002677439627998124325
Q gi|254780170|r   35 FLKCGINTGLVGFAE-VKANGDWKGFDV-----DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWT  107 (342)
Q Consensus        35 ~L~vGv~~~~ppfs~-~d~~G~~~GfDV-----Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T  107 (342)
                      +|=||.-.+..-+.. .....+.+|.|+     +.|+..++...   .+++|+..+..+ ++ +.++.+|++++..+..
T Consensus        27 VLDiGcG~G~~~~~~~~~~~~~v~gvD~S~~~i~~a~~~~~~~~---~~v~~~~~d~~~-l~-~~~~sfD~I~s~~~l~  100 (209)
T 2p8j_A           27 VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRK-LP-FKDESMSFVYSYGTIF  100 (209)
T ss_dssp             EEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCTTS-CC-SCTTCEEEEEECSCGG
T ss_pred             EEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC---CEEEEECCEEEC-CC-CCCCCCCHHHHHHHHH
T ss_conf             99972788999999998589989999597999999986220357---436530020223-68-5434233888766787


No 131
>1xvx_A YFUA; periplasmic iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=44.92  E-value=15  Score=16.13  Aligned_cols=135  Identities=12%  Similarity=0.057  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHC----CCEEEEEECCCCCCCCHHCCCC--------------CC-----
Q ss_conf             999999999679822025998143100267743----9627998124325320110278--------------43-----
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQS----KQIDILSRNTDWTLLREISLGL--------------AF-----  118 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~s----G~vDil~~~~T~T~~Rd~~~~v--------------~F-----  118 (342)
                      .++.+..++-+   .||+++..++.+.+..|.+    ..+||++..-.....+-...++              .|     
T Consensus        20 ~l~~~FeketG---IkV~~~~~~~~~~~~ki~aeg~~~~~Dv~~~~~~~~~~~~~~~gl~~~~~~~~~~~i~~~~~~~~~   96 (312)
T 1xvx_A           20 SWVDGFTKDTG---IKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLDAVTQAQVAQEYRPEHG   96 (312)
T ss_dssp             HHHHHHHHHHC---CCEEEEECCHHHHHHHHHHHGGGCCCSEEEESSSHHHHHHHHTTCBCCCCHHHHHHBCGGGSCSSS
T ss_pred             HHHHHHHHHHC---CEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCC
T ss_conf             99999888659---889999898099999999638999963999887789888775152454311002222365266798


Q ss_pred             -CCCCCCCCEEEEEECCC----C-CCCHHHHC-----CCCEEEEE-CCCHHHHHHHHHHHCC----------CCCCEEEE
Q ss_conf             -53223440234630211----3-47536417-----86203431-3426999999998629----------98507874
Q gi|254780170|r  119 -RPITYFDGQGFIMHKKK----G-ISSVSQLS-----GASICVQA-GTTTELTLADYFKAHN----------MKYHPIVF  176 (342)
Q Consensus       119 -s~~~~~dgq~~lVrk~~----~-i~s~~dL~-----G~~I~v~~-GTT~e~~l~~~~~~~~----------~~~~~v~~  176 (342)
                       ..++.+...+++.+++.    + .+++.||.     |+ ++... +.+....+.......+          +.-.+...
T Consensus        97 ~~~~~~~~~~~~~yn~~~~~~~~~P~t~~dl~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  175 (312)
T 1xvx_A           97 RWTGIAARSTVFVYNPEKISEAELPKSIMDLAKPEWKGR-WAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTNFTAY  175 (312)
T ss_dssp             SCEEEEEEEEEEEECTTTSCGGGSCSSGGGGGSGGGTTS-EEECTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEC
T ss_pred             EEEEEEEEEEEEEECHHHCCCCCCCCCHHHHHCCHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             089998646999971001465669878998714021242-1012014568899887664133567999998631044144


Q ss_pred             CCHHHHHHHHHCCCEEEEEECCHH
Q ss_conf             798999999873960299825047
Q gi|254780170|r  177 ERVEEIDAAYRAHRCDAYTGDISA  200 (342)
Q Consensus       177 ~~~~~a~~al~~Gr~DA~~~D~s~  200 (342)
                      .+......++.+|+|+..+.....
T Consensus       176 ~~~~~~~~~~~~G~~~~~~~~~~~  199 (312)
T 1xvx_A          176 KGNSTVMKAVNAGQIDGGVIYHYY  199 (312)
T ss_dssp             SSHHHHHHHHHTTSSSEEEEETHH
T ss_pred             ECCCHHHHHHHCCCCCEEEEHHHH
T ss_conf             126266666647975531310547


No 132
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=44.86  E-value=14  Score=16.20  Aligned_cols=54  Identities=19%  Similarity=0.348  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH
Q ss_conf             99998877443311212330152089886226717788762358876503337998679999
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR  298 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~  298 (342)
                      ++..-.|+...+  |+..||+...+..+...-..|.+..+.      .+...||.+.+|...
T Consensus        13 ~R~~~glsq~~l--a~~~gvs~~~i~~~e~g~~~p~~~~l~------~la~~l~v~~~~ll~   66 (68)
T 2r1j_L           13 RRKKLKIRQAAL--GKMVGVSNVAISQWERSETEPNGENLL------ALSKALQCSPDYLLK   66 (68)
T ss_dssp             HHHHHTCCHHHH--HHHHTSCHHHHHHHHTTSSCCBHHHHH------HHHHHTTSCHHHHHH
T ss_pred             HHHHCCCCHHHH--HHHCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHC
T ss_conf             999859999999--887399999999998799899999999------999997997999858


No 133
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=43.58  E-value=15  Score=16.00  Aligned_cols=201  Identities=11%  Similarity=0.050  Sum_probs=94.6

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHH----CCCEEEEEECCCC
Q ss_conf             57949998717898830688989880150999999999967982202599814-310026774----3962799812432
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLN-AKERFLALQ----SKQIDILSRNTDW  106 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~-~~~rf~aL~----sG~vDil~~~~T~  106 (342)
                      ++.+|+|-....+.     .+.    |-.-++.++.-++-+   .+|+++... ..+.+..|+    +.++||++..-..
T Consensus        21 ~~~~l~Vy~~~~~~-----~~~----~~~~~i~~~FE~~~g---i~V~~~~~~s~~~ll~kl~~e~~~~~~DVv~~~~~~   88 (330)
T 2qry_A           21 MKPVLTVYTYDSFA-----ADW----GPGPVVKKAFEADCN---CELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNN   88 (330)
T ss_dssp             -CCEEEEEECHHHH-----STT----SSHHHHHHHHHTTSC---SEEEEEECSCHHHHHHHHHHHGGGCCCSEEEEEEGG
T ss_pred             CCCEEEEEECCCCC-----CCC----CCCHHHHHHHHHHHC---CEEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCHH
T ss_conf             79879999787655-----355----777799999999879---789999589989999999972799983299975677


Q ss_pred             CCCCHHCCCC---------------CCCCCCC----CCCEEEEEECC---CCCCCHHHHC----CCCEEEEECCCH---H
Q ss_conf             5320110278---------------4353223----44023463021---1347536417----862034313426---9
Q gi|254780170|r  107 TLLREISLGL---------------AFRPITY----FDGQGFIMHKK---KGISSVSQLS----GASICVQAGTTT---E  157 (342)
Q Consensus       107 T~~Rd~~~~v---------------~Fs~~~~----~dgq~~lVrk~---~~i~s~~dL~----G~~I~v~~GTT~---e  157 (342)
                      ...|-...++               .+..+++    +..-++..+++   ...++++||-    ..+|+....+++   .
T Consensus        89 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yn~~~~~~~p~s~~dL~~p~~~gki~~~~~~~~~~~~  168 (330)
T 2qry_A           89 LLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGL  168 (330)
T ss_dssp             GHHHHHHHTCBCCCCCCGGGCCCTTCCCCSSCEEEEEEEEEEEEETTTCSSCCSSHHHHHHCSSCCCEEEECTTTCHHHH
T ss_pred             HHHHHHHCCCCCCCCCCHHHHCCCHHHCCCCEEEECCCEEEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf             89999874752124576333036423236650320452478874332256899778998514024125742775347789


Q ss_pred             HHHH---H--------HHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH-HHHHHHHHCCCCHHHCCCCCCCCCCC
Q ss_conf             9999---9--------9986299850787479899999987396029982504-79999983678001002564442371
Q gi|254780170|r  158 LTLA---D--------YFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS-ALYALKLTNDRPSEHVILPDIISKSP  225 (342)
Q Consensus       158 ~~l~---~--------~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s-~La~~~~~~~~p~~~~il~e~iskEP  225 (342)
                      ..+.   .        ++.+.. +.......+..+++..+.+|++++...-.. ...........+-.+.+.++...-.+
T Consensus       169 ~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Ge~~i~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~~~~  247 (330)
T 2qry_A          169 GLLLWMQKVYGDDAPQAWQKLA-KKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQV  247 (330)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHH-TTEEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEEE
T ss_pred             HHHHHHHHHCCCHHHHHHHHHH-HHCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEECCCCEEEEE
T ss_conf             9999999857956999999998-726766666468887650477538999515799999855798510440678707721


Q ss_pred             EEEECCCCCHHH---HHHHHHHH
Q ss_conf             010002777579---99988774
Q gi|254780170|r  226 LAPAIIQGDTEW---YNIVSWTH  245 (342)
Q Consensus       226 lg~avr~gD~~w---~d~V~W~~  245 (342)
                      -+.++.++=++=   ..+++|.+
T Consensus       248 ~~~~I~k~a~~~~~A~~Fidfll  270 (330)
T 2qry_A          248 EVAARTAASKQPELAQKFLQFMV  270 (330)
T ss_dssp             EEEEEBTTCSCHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             46665348997699999999975


No 134
>1h76_A Serotransferrin; iron transport, glycoprotein, metal-binding; HET: NAG; 2.15A {Sus scrofa} SCOP: c.94.1.2 c.94.1.2 PDB: 1jnf_A 2hav_A* 2hau_A* 1suv_E
Probab=42.19  E-value=16  Score=15.86  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEE
Q ss_conf             9999999996798220259981-431002677439627998
Q gi|254780170|r   62 DFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILS  101 (342)
Q Consensus        62 Dl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~  101 (342)
                      .-|.+++..+..   +++-+.. +..+-+.+++.|+.|+++
T Consensus       357 ~KC~~~s~~~~~---~i~Cv~~~s~~dCm~~I~~g~ADi~~  394 (696)
T 1h76_A          357 QKCDAWSINSGG---KIECVSAENTEDCIAKIVKGEADAMS  394 (696)
T ss_dssp             HHHHHHHHHTTT---SEEEEEESSHHHHHHHHHHTSCCBEE
T ss_pred             HHHHHHHHHCCC---CEEEEECCCHHHHHHHHHCCCCCEEE
T ss_conf             999999986078---66999479999999998769987899


No 135
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=41.83  E-value=13  Score=16.46  Aligned_cols=11  Identities=0%  Similarity=-0.221  Sum_probs=4.6

Q ss_pred             HHHHHHHCCCE
Q ss_conf             99999873960
Q gi|254780170|r  181 EIDAAYRAHRC  191 (342)
Q Consensus       181 ~a~~al~~Gr~  191 (342)
                      ..+..+.+|+.
T Consensus        40 s~is~~E~G~~   50 (126)
T 3ivp_A           40 RYLTNIENKGQ   50 (126)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHHCCC
T ss_conf             79999970777


No 136
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=41.66  E-value=15  Score=16.04  Aligned_cols=55  Identities=20%  Similarity=0.250  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf             999988774433112123301520898862267177887623588765033379986799999
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRI  299 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~  299 (342)
                      ++.--+|+...  .|+.+||+.+++..+......|...-++      .++..||.+.+|..+.
T Consensus        26 ~~~~~gisq~e--LA~~lGvs~~~is~~e~G~~~~s~~~a~------~La~~lgvs~~~~l~l   80 (104)
T 3cec_A           26 ILDDLDINTAN--FAEILGVSNQTIQEVINGQRSITVDIAI------RLGKALGNGPRLWLNL   80 (104)
T ss_dssp             HHHHHTCCHHH--HHHHHTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTSCHHHHHHH
T ss_pred             HHHHCCCCHHH--HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHHH
T ss_conf             99987998999--9999783789999997588789899999------9999989199999850


No 137
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=41.32  E-value=9  Score=17.49  Aligned_cols=52  Identities=10%  Similarity=0.068  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH
Q ss_conf             9999887744331121233--01520898862267177887623588765033379986799
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELG--ITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT  296 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~g--it~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~  296 (342)
                      +|.--.|+...+  ||..|  |++..+.........|.+.++.      .+...||++.+|.
T Consensus        16 ~R~~~gltq~el--A~~~g~~is~~~is~~E~G~~~ps~~~l~------~la~~l~v~~~~L   69 (71)
T 2ewt_A           16 IRTQQGLSLHGV--EEKSQGRWKAVVVGSYERGDRAVTVQRLA------ELADFYGVPVQEL   69 (71)
T ss_dssp             HHHHTTCCHHHH--HHHTTTSSCHHHHHHHHHTCSCCCHHHHH------HHHHHHTSCGGGG
T ss_pred             HHHHCCCCHHHH--HHHHCCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH
T ss_conf             998849989999--98988874799999998599667689999------9999989689997


No 138
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=39.59  E-value=18  Score=15.61  Aligned_cols=224  Identities=12%  Similarity=0.034  Sum_probs=99.0

Q ss_pred             CEEEEEECCCCCCHHHHHC----CCEEEEEECCCCCCCCHHCCC-------------C--C------CCCCCCCCCEEEE
Q ss_conf             2025998143100267743----962799812432532011027-------------8--4------3532234402346
Q gi|254780170|r   76 SKIQYLPLNAKERFLALQS----KQIDILSRNTDWTLLREISLG-------------L--A------FRPITYFDGQGFI  130 (342)
Q Consensus        76 ~kVe~v~~~~~~rf~aL~s----G~vDil~~~~T~T~~Rd~~~~-------------v--~------Fs~~~~~dgq~~l  130 (342)
                      .||+++..+..+.+.-|++    .++||++........+....+             +  .      +..++++.+..+.
T Consensus        55 ekv~~i~~~~~~~~~kl~a~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (346)
T 2voz_A           55 GEVNLIEASAEELIERIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNERIPENLRHPDGLWYGFTQRARVLY  134 (346)
T ss_dssp             SEEEEEECCHHHHHHHHHHTGGGCCCSEEEEESHHHHHHHHHTTCBCCCCCHHHHHHSCGGGBCTTSSCEEEEEEEEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHCHHHHCCCCCCCEEEEEEEEEEE
T ss_conf             16888987829999999964789996399606889999998668745467077886380754388755123334347888


Q ss_pred             EECC----CCCCCHHHHCC----CCEEEEECCCH--HHHH------------HHHHHHCCCCCCEEEECCHHHHHHHHHC
Q ss_conf             3021----13475364178----62034313426--9999------------9999862998507874798999999873
Q gi|254780170|r  131 MHKK----KGISSVSQLSG----ASICVQAGTTT--ELTL------------ADYFKAHNMKYHPIVFERVEEIDAAYRA  188 (342)
Q Consensus       131 Vrk~----~~i~s~~dL~G----~~I~v~~GTT~--e~~l------------~~~~~~~~~~~~~v~~~~~~~a~~al~~  188 (342)
                      .+++    ..+++++||-.    .+|.....+..  ...+            .+.+....................++..
T Consensus       135 ~~~~~~~~~~p~sw~dL~~~~~kgki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (346)
T 2voz_A          135 YSRDRVNPADLSTYEALADPQWRGKILVRPSSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQIRAIAA  214 (346)
T ss_dssp             EETTTCCGGGCCCSGGGGSGGGTTTEECCCTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHTBSSSCCSCHHHHHHHHHT
T ss_pred             EECCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf             73134577898706762398758965126888518999999999850761145678899874101023542367888763


Q ss_pred             CCEEEEEECCHHHHHHHHHCCC-------CHHHCCCCCCCCCC-----CEEEECCCCCHH---HHHHHHHHHHHHHH---
Q ss_conf             9602998250479999983678-------00100256444237-----101000277757---99998877443311---
Q gi|254780170|r  189 HRCDAYTGDISALYALKLTNDR-------PSEHVILPDIISKS-----PLAPAIIQGDTE---WYNIVSWTHYAMVT---  250 (342)
Q Consensus       189 Gr~DA~~~D~s~La~~~~~~~~-------p~~~~il~e~iskE-----Plg~avr~gD~~---w~d~V~W~~~ali~---  250 (342)
                      |..|..................       +.+.......+-+|     |-++++.+|-++   =..+++|.+-.=++   
T Consensus       215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~i~k~a~n~e~A~~Fi~fllspe~Q~~~  294 (346)
T 2voz_A          215 GIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRDAAIAFLEYLASDDAQRYF  294 (346)
T ss_dssp             TSCSEEEEEHHHHHHHHHCCCHHHHHHHHHEEEECCSCSTTSCCBCEEEEEEEEBTTCTTHHHHHHHHHHHTSHHHHHHH
T ss_pred             CCCCCCHHCHHHHHHHHHCCCCHHHHCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf             54320010102455553013203331144443003454347888469887433026999989999999997699999999


Q ss_pred             HHHHHCCHHHHHHHHHCCCCHHHHHHHCCCC-CCCCHHHCCCCHHHHHHHHHHCC
Q ss_conf             2123301520898862267177887623588-76503337998679999999718
Q gi|254780170|r  251 AEELGITQKNINQVSKDTTNPDVQRFLGIDK-SSNIGEALGLTKDWTYRIIRHMG  304 (342)
Q Consensus       251 Aee~git~~nv~~~~~~s~~p~i~r~lg~~~-~~~~g~~lgl~~~~~~~~i~~vG  304 (342)
                      ||+.+.--.|-    .....|++..+.-..+ .-++..-....++| .+.|..||
T Consensus       295 a~~~~~~Pv~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  344 (346)
T 2voz_A          295 AEGNNEYPVIP----GVPIDPVLAAHGQLKGDPLNVSNLGRYQPDS-ARLMNEVG  344 (346)
T ss_dssp             HHHTTCEESST----TSCCCHHHHTTCCCCBCCSCTHHHHHTHHHH-HHHHHHTT
T ss_pred             HHHCCEEECCC----CCCCCHHHCCCCCCCCCCCCHHHHHHCCHHH-HHHHHHCC
T ss_conf             97274531789----9999800167332687878999997532999-99999728


No 139
>1wn9_A The hypothetical protein (TT1805); X-RAY crystallography, thermus thermophillus, structural genomics; 1.58A {Thermus thermophilus HB8} SCOP: d.319.1.1 PDB: 1wna_A
Probab=39.19  E-value=12  Score=16.66  Aligned_cols=31  Identities=16%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             44237101000277757999988774433112123301
Q gi|254780170|r  220 IISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGIT  257 (342)
Q Consensus       220 ~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git  257 (342)
                      .+|..-+||+++.||....++|+|..       |.|++
T Consensus        57 ll~~dAFGPafp~G~~ALaELv~wl~-------~~G~r   87 (131)
T 1wn9_A           57 LLVPDAFGPAFPGGEEALSELVGLLL-------AQGAR   87 (131)
T ss_dssp             EEEEEEESTTSTTHHHHHHHHHHHHH-------HTTCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCC
T ss_conf             21565558788436899999999999-------84883


No 140
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=39.05  E-value=17  Score=15.81  Aligned_cols=53  Identities=11%  Similarity=0.088  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH
Q ss_conf             9999887744331121233015208988622671778876235887650333799867999
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY  297 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~  297 (342)
                      ++.--.|+...  .|+..||++..+......-..|.+..+.      .+.+.||++.+|..
T Consensus        36 ~R~~~glSq~~--lA~~~gis~~~ls~~E~g~~~ps~~~l~------~ia~~l~v~~~~ll   88 (117)
T 3f52_A           36 FRADKGVTLRE--LAEASRVSPGYLSELERGRKEVSSELLA------SVCHALGASVADVL   88 (117)
T ss_dssp             HHHHHTCCHHH--HHHHTTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTCCHHHHH
T ss_pred             HHHHCCCCHHH--HHHHHHHHHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHH
T ss_conf             99981999999--9988533399999998699899999999------99999899799996


No 141
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=37.84  E-value=15  Score=16.00  Aligned_cols=52  Identities=13%  Similarity=0.164  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH
Q ss_conf             999988774433112123301520898862267177887623588765033379986799
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT  296 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~  296 (342)
                      ++..-.|+...+  |+..||+...+..+......|.+..+.      .+...||++.++.
T Consensus        21 ~R~~~gltq~~l--A~~~gis~~~i~~~E~g~~~p~~~~l~------~ia~~l~v~~~~l   72 (74)
T 1y7y_A           21 LRTAKGLSQETL--AFLSGLDRSYVGGVERGQRNVSLVNIL------KLATALDIEPREL   72 (74)
T ss_dssp             HHHHTTCCHHHH--HHHHTCCHHHHHHHHTTCSCCBHHHHH------HHHHHTTSCGGGG
T ss_pred             HHHHCCCCHHHH--HHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH
T ss_conf             999819999999--989697999999998799899999999------9999989399998


No 142
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=37.46  E-value=19  Score=15.40  Aligned_cols=43  Identities=21%  Similarity=0.431  Sum_probs=31.9

Q ss_pred             HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH
Q ss_conf             1212330152089886226717788762358876503337998679999
Q gi|254780170|r  250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR  298 (342)
Q Consensus       250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~  298 (342)
                      .|+..||+...+..+...-.+|.+..+.      .+.+.||++.+|...
T Consensus        24 la~~~gvs~~~i~~~e~G~~~p~~~~l~------~ia~~~~v~~~~ll~   66 (76)
T 1adr_A           24 LGKMVGVSNVAISQWERSETEPNGENLL------ALSKALQCSPDYLLK   66 (76)
T ss_dssp             HHHHHTSCHHHHHHHHTTSSCCCHHHHH------HHHHHTTSCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHC
T ss_conf             9999796999999998799899999999------999996988999957


No 143
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=37.36  E-value=16  Score=15.93  Aligned_cols=42  Identities=14%  Similarity=0.292  Sum_probs=27.8

Q ss_pred             HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH
Q ss_conf             121233015208988622671778876235887650333799867999
Q gi|254780170|r  250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY  297 (342)
Q Consensus       250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~  297 (342)
                      .|+.+||+.+.+.........|.+..+.      .+...||++.+|..
T Consensus        28 lA~~lgvs~~~is~~e~G~~~ps~~~l~------~la~~l~v~~~~l~   69 (94)
T 2kpj_A           28 IAKSIGVSPQTFNTWCKGIAIPRMGKVQ------ALADYFNINKSDLI   69 (94)
T ss_dssp             HHHHHTCCHHHHHHHHTTSCCCCHHHHH------HHHHHHTCCTHHHH
T ss_pred             HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHH
T ss_conf             9998892883699997376799999999------99999897899990


No 144
>3ek3_A Nitroreductase; YP_211706.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=36.99  E-value=10  Score=17.08  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHH---HHHHHCCC
Q ss_conf             57999988774433112123301520898862267177---88762358
Q gi|254780170|r  235 TEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPD---VQRFLGID  280 (342)
Q Consensus       235 ~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~---i~r~lg~~  280 (342)
                      ....|..-+..+.++.|+++|+.+.-+..+.....+|+   ++.+||+.
T Consensus       108 ~~~~d~~~a~~n~~L~a~~~Glgt~~~~~~~~~~~~~~~~~~~~~l~lp  156 (190)
T 3ek3_A          108 WAGMDCACAIENMFLAATSLGIASCWINQLGTTCDDPEVRAYLTSLGVP  156 (190)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCEEEEECTTTTTTTSHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCCCHHHHHHHHHHCCC
T ss_conf             6762599999999999998699733000012104575599999981939


No 145
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=36.32  E-value=19  Score=15.48  Aligned_cols=58  Identities=12%  Similarity=0.166  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHH
Q ss_conf             799998877443311212330152089886226717788762358876503337998679999999
Q gi|254780170|r  236 EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIR  301 (342)
Q Consensus       236 ~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~  301 (342)
                      +++.--.|+...+  |+..||+...+..+.....+|.+..+.      .+...||++.++.+.-..
T Consensus        75 ~lR~~~glTQ~el--A~~~gis~~~is~iE~G~~~ps~~~l~------kia~~lgvs~~el~~~~e  132 (141)
T 3kxa_A           75 SLRMKKGFTQSEL--ATAAGLPQPYLSRIENSKQSLQDKTVQ------KLANALGVSPLEVRAAFE  132 (141)
T ss_dssp             HHHHHTTCCHHHH--HHHTTCCHHHHHHHHHTCSCCCHHHHH------HHHHHHTCCHHHHHHHHG
T ss_pred             HHHHHCCCCHHHH--HHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHHHHH
T ss_conf             9999829989999--999896999999998799789999999------999994998999986554


No 146
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=35.69  E-value=20  Score=15.22  Aligned_cols=71  Identities=10%  Similarity=0.187  Sum_probs=43.4

Q ss_pred             EEEEEEECCCCCCEEE-CCCCCEEEEHHH-----HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCC
Q ss_conf             4999871789883068-898988015099-----99999999679822025998143100267743962799812432
Q gi|254780170|r   35 FLKCGINTGLVGFAEV-KANGDWKGFDVD-----FCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDW  106 (342)
Q Consensus        35 ~L~vGv~~~~ppfs~~-d~~G~~~GfDVD-----l~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~  106 (342)
                      +|-+|.-.+.-.+... ...++.+|.|+|     +++.-++.-.. ..+|+++..+..+....+..+++|++++|..+
T Consensus        53 vLDlG~G~G~~~l~la~~~~~~v~~vDi~~~~~~~A~~N~~~n~l-~~~v~~~~~D~~~~~~~~~~~~fD~Iv~NPPy  129 (259)
T 3lpm_A           53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL-EDQIEIIEYDLKKITDLIPKERADIVTCNPPY  129 (259)
T ss_dssp             EEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC-TTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CHHHEEEEHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf             999725858999999867898899999989999999999986073-30112330011100010355425478857885


No 147
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=35.48  E-value=13  Score=16.55  Aligned_cols=53  Identities=15%  Similarity=0.215  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH
Q ss_conf             7999988774433112123301520898862267177887623588765033379986799
Q gi|254780170|r  236 EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT  296 (342)
Q Consensus       236 ~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~  296 (342)
                      +++..-.|+-  --.|+.+||+...+.........|.+..+.      .+...||++.+|.
T Consensus        15 ~~r~~~g~tq--~~lA~~lgis~~~is~~e~G~~~p~~~~l~------~ia~~~~v~~~~L   67 (73)
T 3omt_A           15 SVLAEKGKTN--LWLTETLDKNKTTVSKWCTNDVQPSLETLF------DIAEALNVDVREL   67 (73)
T ss_dssp             HHHHHHTCCH--HHHHHHTTCCHHHHHHHHTTSSCCCHHHHH------HHHHHHTSCGGGG
T ss_pred             HHHHHCCCCH--HHHHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH
T ss_conf             9999939989--999998599866789998498899867999------9999989489998


No 148
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=34.72  E-value=13  Score=16.39  Aligned_cols=51  Identities=16%  Similarity=0.262  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH
Q ss_conf             99988774433112123301520898862267177887623588765033379986799
Q gi|254780170|r  238 YNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT  296 (342)
Q Consensus       238 ~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~  296 (342)
                      +.--.|+...  .|+..||++..+.........|.+..+.      .+...|+++.+|.
T Consensus        19 r~~~gltq~~--lA~~~gvs~~tis~~e~g~~~p~~~~l~------~ia~~l~v~~~~l   69 (76)
T 3bs3_A           19 LAEKQRTNRW--LAEQMGKSENTISRWCSNKSQPSLDMLV------KVAELLNVDPRQL   69 (76)
T ss_dssp             HHHTTCCHHH--HHHHHTCCHHHHHHHHTTSSCCCHHHHH------HHHHHHTSCGGGG
T ss_pred             HHHCCCCHHH--HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH
T ss_conf             9990998999--9999888999999998599999999999------9999979979999


No 149
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=34.68  E-value=13  Score=16.37  Aligned_cols=53  Identities=17%  Similarity=0.167  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH
Q ss_conf             7999988774433112123301520898862267177887623588765033379986799
Q gi|254780170|r  236 EWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT  296 (342)
Q Consensus       236 ~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~  296 (342)
                      ++|..-.|+...+  |+.+||+++.+..+......|.+..+.      .+...||++.+|.
T Consensus        30 ~lR~~~glTq~el--A~~lgvs~~tis~~E~G~~~Ps~~~L~------kla~~l~vs~~~l   82 (111)
T 3mlf_A           30 ELRTDYGLTQKEL--GDLFKVSSRTIQNMEKDSTNIKDSLLS------KYMSAFNVKYDDI   82 (111)
T ss_dssp             HHHHHTTCCHHHH--HHHHTSCHHHHHHHHHCCTTCCHHHHH------HHHHHHTCCGGGE
T ss_pred             HHHHHCCCCHHHH--HHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH
T ss_conf             9999859999999--999698999999998499999999999------9999989489999


No 150
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 1zlq_A* 3dp8_A* 3e3k_A* 1uiu_A 1uiv_A
Probab=34.62  E-value=21  Score=15.17  Aligned_cols=26  Identities=15%  Similarity=0.070  Sum_probs=14.3

Q ss_pred             CCEEEECCHHHHHHHHHCCCEEEEEE
Q ss_conf             50787479899999987396029982
Q gi|254780170|r  171 YHPIVFERVEEIDAAYRAHRCDAYTG  196 (342)
Q Consensus       171 ~~~v~~~~~~~a~~al~~Gr~DA~~~  196 (342)
                      +++..+.+....++++.+|++|.+..
T Consensus       194 I~~~~~~~~~~~~~~l~~G~vd~~~~  219 (502)
T 2noo_A          194 ITFNVIPDPTTRAVAFETGDIDLLYG  219 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHSSCCEEEE
T ss_pred             EEEEEECCHHHHHHHHHCCCEEEEEC
T ss_conf             99998588999999986797558815


No 151
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=33.73  E-value=21  Score=15.12  Aligned_cols=38  Identities=24%  Similarity=0.457  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             98877443311212330152089886226717788762
Q gi|254780170|r  240 IVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL  277 (342)
Q Consensus       240 ~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l  277 (342)
                      -+|-.+.|--.|||+||+++.+-.+..+.+-|.+-++.
T Consensus        11 rirlsltaksvaeemgisrqqlcnieqsetapvvvkyi   48 (77)
T 2k9q_A           11 RIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYI   48 (77)
T ss_dssp             HHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHH
T ss_pred             EEEEEEEHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHH
T ss_conf             66775226778998484598834741136577348889


No 152
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=32.28  E-value=18  Score=15.59  Aligned_cols=13  Identities=8%  Similarity=0.112  Sum_probs=5.6

Q ss_pred             EHHHHHHHHHHHH
Q ss_conf             5099999999996
Q gi|254780170|r   59 FDVDFCRALSSAI   71 (342)
Q Consensus        59 fDVDl~raiAaal   71 (342)
                      ..++....+|.++
T Consensus        57 ~~~~~l~~ia~~l   69 (236)
T 3bdn_A           57 LNAYNAALLAKIL   69 (236)
T ss_dssp             CCHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHC
T ss_conf             6799999752202


No 153
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=32.20  E-value=23  Score=14.87  Aligned_cols=53  Identities=15%  Similarity=0.084  Sum_probs=36.2

Q ss_pred             CCHHHH-CCCCEEEEECCCHHHHHHHHHHHC-CCCCCEEEE---CCHHHHHHHHHCCCEEEEEE
Q ss_conf             753641-786203431342699999999862-998507874---79899999987396029982
Q gi|254780170|r  138 SSVSQL-SGASICVQAGTTTELTLADYFKAH-NMKYHPIVF---ERVEEIDAAYRAHRCDAYTG  196 (342)
Q Consensus       138 ~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~-~~~~~~v~~---~~~~~a~~al~~Gr~DA~~~  196 (342)
                      +...+| .|-+|....||      .+++.++ ++..+.+..   ....+....+.+|++|+++.
T Consensus        47 k~~~~lL~Gf~LvAT~GT------a~~L~e~ggl~v~~v~~~~~gg~p~I~d~I~~geI~lVIN  104 (178)
T 1vmd_A           47 SFNLGTLSKHELYATGTT------GALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIF  104 (178)
T ss_dssp             HHSHHHHTTSEEEECHHH------HHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEE
T ss_pred             HHHHHHHCCCEEEEECCH------HHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEE
T ss_conf             999999649749970538------9999873597489864037888852999998698218998


No 154
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=32.17  E-value=23  Score=14.86  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH
Q ss_conf             77443311212330152089886226717788762358876503337998679999
Q gi|254780170|r  243 WTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR  298 (342)
Q Consensus       243 W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~  298 (342)
                      |+...  .|+..||+...+..+.....+|.+..+.      .+...||++.++...
T Consensus        25 lsq~~--lA~~~gis~~~i~~~E~G~~~ps~~~l~------~la~~l~i~~~~l~~   72 (82)
T 3clc_A           25 MTQED--LAYKSNLDRTYISGIERNSRNLTIKSLE------LIMKGLEVSDVVFFE   72 (82)
T ss_dssp             CCHHH--HHHHHTSCHHHHHHHHTTCCCCBHHHHH------HHHHHHTCCHHHHHH
T ss_pred             CCHHH--HHHCCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHC
T ss_conf             99999--9570399887999998599899999999------999997988999977


No 155
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=31.85  E-value=13  Score=16.39  Aligned_cols=147  Identities=14%  Similarity=0.076  Sum_probs=75.4

Q ss_pred             EEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEEE-
Q ss_conf             2599814310026774396279981243253201102784353223440234630211-----3475364178620343-
Q gi|254780170|r   78 IQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASICVQ-  151 (342)
Q Consensus        78 Ve~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I~v~-  151 (342)
                      +.+. +...+++..|.+|++|+.+...   ...  ...+.+. +.+.+.-.+++.++.     .-.++++|.+...... 
T Consensus       122 ~~~~-~~~~~~~~~L~~~~~Dl~i~~~---~~~--~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~  194 (306)
T 3hhg_A          122 IRLS-LVSSEGYINLIERKVDIALRAG---ELD--DSGLRAR-HLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFT  194 (306)
T ss_dssp             EEEE-EECCSSSHHHHTTSSSCEEESC---CCC--CSSCEEE-EEEEEEEEEEECHHHHHHHCCCSSTTGGGGSCBCEES
T ss_pred             CEEE-EEECCHHHHHHCCCCEEEEECC---CCC--CCCEEEE-EEEEEEEEEEEECHHHHHCCCCCCHHHHCCCCEEEEC
T ss_conf             4599-9737478898749903999817---888--8984899-9630359999806477645998997896148479856


Q ss_pred             ECCCHHHHHHHHHHHCCCCCC-EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC--CEEE
Q ss_conf             134269999999986299850-7874798999999873960299825047999998367800100256444237--1010
Q gi|254780170|r  152 AGTTTELTLADYFKAHNMKYH-PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS--PLAP  228 (342)
Q Consensus       152 ~GTT~e~~l~~~~~~~~~~~~-~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE--Plg~  228 (342)
                      .++........++...+...+ ....++......++.+|..=++.....  +.....  ...-..++|+.....  ++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lp~~~--~~~~l~--~~~lv~i~~~~~~~~~~~~~l  270 (306)
T 3hhg_A          195 EPGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGCGIVCLSDFL--VDNDIA--EGKLIPLLAEQTSDKTHPFNA  270 (306)
T ss_dssp             STTTSCEEEEECSSSCEEECCCSSEESSHHHHHHHHHTTSCEEEEEHHH--HHHHHH--HTSSEECSTTTBCCCEEEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCEEECCHHH--HHHHHH--CCCEEEECCCCCCCCEEEEEE
T ss_conf             9986036788763057655454310268999999998199289923999--999997--798699567456787138999


Q ss_pred             ECCCCCH
Q ss_conf             0027775
Q gi|254780170|r  229 AIIQGDT  235 (342)
Q Consensus       229 avr~gD~  235 (342)
                      +.+++..
T Consensus       271 v~~~~~~  277 (306)
T 3hhg_A          271 VYYSDKA  277 (306)
T ss_dssp             EECSGGG
T ss_pred             EEECCCC
T ss_conf             9979987


No 156
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.44  E-value=24  Score=14.79  Aligned_cols=55  Identities=15%  Similarity=0.118  Sum_probs=43.8

Q ss_pred             HCCCCEEEEECCCHH-HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf             178620343134269-999999986299850787479899999987396029982504
Q gi|254780170|r  143 LSGASICVQAGTTTE-LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS  199 (342)
Q Consensus       143 L~G~~I~v~~GTT~e-~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s  199 (342)
                      |.|++|-+.-..... ..+.++++..|  +++....+..++++.+...+.|.+..|..
T Consensus         5 l~g~kILiVDD~~~~r~~l~~~L~~~g--~~v~~a~~g~~Al~~l~~~~~dlvi~D~~   60 (130)
T 3eod_A            5 LVGKQILIVEDEQVFRSLLDSWFSSLG--ATTVLAADGVDALELLGGFTPDLMICDIA   60 (130)
T ss_dssp             TTTCEEEEECSCHHHHHHHHHHHHHTT--CEEEEESCHHHHHHHHTTCCCSEEEECCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCCCEEHHHHC
T ss_conf             899989999698999999999999889--99999899999999985289887457421


No 157
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=31.03  E-value=24  Score=14.75  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf             12123301520898862267177887623588765033379986799999
Q gi|254780170|r  250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRI  299 (342)
Q Consensus       250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~  299 (342)
                      .|+..||+...|..+.....+|.+..+.      .+...||++.++...-
T Consensus        29 lA~~~gvs~~~i~~~E~g~~~ps~~~l~------~la~~l~v~~~~l~~~   72 (77)
T 2b5a_A           29 LADLAGLHRTYISEVERGDRNISLINIH------KICAALDIPASTFFRK   72 (77)
T ss_dssp             HHHHHTCCHHHHHHHHTTCSCCBHHHHH------HHHHHTTCCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHHCC
T ss_conf             9989796999999998799899999999------9999979889998543


No 158
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=31.02  E-value=24  Score=14.74  Aligned_cols=40  Identities=20%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             HHHHHCCHHHHHHHHHC-CCCHHHHHHHCCCCCCCCHHHCCCCHHHH
Q ss_conf             21233015208988622-67177887623588765033379986799
Q gi|254780170|r  251 AEELGITQKNINQVSKD-TTNPDVQRFLGIDKSSNIGEALGLTKDWT  296 (342)
Q Consensus       251 Aee~git~~nv~~~~~~-s~~p~i~r~lg~~~~~~~g~~lgl~~~~~  296 (342)
                      |+..||+...+..+... ...|.+..+.      .+...||++.+|.
T Consensus        21 A~~~Gvs~~~is~~E~G~~~~p~~~~l~------~ia~~l~v~~~~l   61 (111)
T 1b0n_A           21 AEKAGVAKSYLSSIERNLQTNPSIQFLE------KVSAVLDVSVHTL   61 (111)
T ss_dssp             HHHHTCCHHHHHHHHTTCCSCCCHHHHH------HHHHHHTCCHHHH
T ss_pred             HHHHCCCHHHHHHHHCCCCCCCCHHHHH------HHHHHHCCCHHHH
T ss_conf             8784988999999987998999999999------9999989879998


No 159
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=30.63  E-value=17  Score=15.75  Aligned_cols=41  Identities=10%  Similarity=0.150  Sum_probs=26.3

Q ss_pred             HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHH
Q ss_conf             12123301520898862267177887623588765033379986799
Q gi|254780170|r  250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWT  296 (342)
Q Consensus       250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~  296 (342)
                      .|+.+|++++.+..+......|.+..+.      .+...||++.++.
T Consensus        31 lA~~lgvs~~~is~~E~G~~~p~~~~l~------~ia~~l~v~~~~~   71 (80)
T 3kz3_A           31 VADKMGMGQSAVAALFNGINALNAYNAA------LLAKILKVSVEEF   71 (80)
T ss_dssp             HHHHTTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTSCGGGT
T ss_pred             HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHH
T ss_conf             9662098898899998799789999999------9999989889998


No 160
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=29.77  E-value=26  Score=14.61  Aligned_cols=132  Identities=11%  Similarity=0.055  Sum_probs=70.0

Q ss_pred             HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHC-CCCCCCCCCCEEEECCCCCHH
Q ss_conf             9999999862998507874798999999873960299825047999998367800100-256444237101000277757
Q gi|254780170|r  158 LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHV-ILPDIISKSPLAPAIIQGDTE  236 (342)
Q Consensus       158 ~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~-il~e~iskEPlg~avr~gD~~  236 (342)
                      ..+...++..|+++-.-+++-.+++-..-..|.||++.++.+-+...    ..+.... +......+.+......+...+
T Consensus       132 ~~~~~ll~~~gi~~i~Ap~EAdaq~a~L~~~g~vd~v~teD~D~l~~----g~~~~~~~l~~~~~~~~~~~~~~~~~~~~  207 (336)
T 1rxw_A          132 DSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLF----GSPRLARNLAITGKRKLPGKNVYVDVKPE  207 (336)
T ss_dssp             HHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHT----TCSEEEESCCC-------------CCCCE
T ss_pred             HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCC----CCCHHHEEEECCCCEECCCCCCCCCCCEE
T ss_conf             99999999749817875548999999999759814996577542236----77513303421585423565432355138


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf             9999887744331121233015208988622671778876235887650333799867999999971869998788
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDR  312 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~r  312 (342)
                      |.+.      .- .-|++|+|....-         +++-|.|-+-   .-.--|+.+.=|++.|++-|+-.+|++.
T Consensus       208 ~~~~------~~-vl~~lgl~~~qfi---------d~~iL~G~Dy---~~gv~giG~ktA~kli~~~~~i~~i~~~  264 (336)
T 1rxw_A          208 IIIL------ES-NLKRLGLTREQLI---------DIAILVGTDY---NEGVKGVGVKKALNYIKTYGDIFRALKA  264 (336)
T ss_dssp             EEEH------HH-HHHHHTCCHHHHH---------HHHHHHCBTT---BCCCTTCCHHHHHHHHHHHSSHHHHHHH
T ss_pred             EEEH------HH-HHHHCCCCHHHHH---------HHHHHCCCCC---CCCCCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf             8659------98-8987099999999---------9998608876---8999996889999999992999999998


No 161
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=28.13  E-value=27  Score=14.43  Aligned_cols=51  Identities=22%  Similarity=0.203  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHH
Q ss_conf             99998877443311212330152089886226717788762358876503337998679
Q gi|254780170|r  237 WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDW  295 (342)
Q Consensus       237 w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~  295 (342)
                      .+.--.|+...  .|+..||++..+........+|.+..+.      .+.+.||++.+.
T Consensus         9 lR~~~g~tq~~--lA~~~gis~~~is~~e~g~~~ps~~~l~------~ia~~l~v~~~~   59 (66)
T 1utx_A            9 IREKKKISQSE--LAALLEVSRQTINGIEKNKYNPSLQLAL------KIAYYLNTPLED   59 (66)
T ss_dssp             HHHHTTCCHHH--HHHHHTSCHHHHHHHHTTSCCCCHHHHH------HHHHHTTSCHHH
T ss_pred             HHHHCCCCHHH--HHHHCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHH
T ss_conf             99984999999--9887299899999998799899999999------999998977999


No 162
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=27.48  E-value=28  Score=14.36  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=37.5

Q ss_pred             EEEEEEECCCCCCEEECCCCCEEEEHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCC
Q ss_conf             499987178988306889898801509-----999999999679822025998143100267743962799812432
Q gi|254780170|r   35 FLKCGINTGLVGFAEVKANGDWKGFDV-----DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDW  106 (342)
Q Consensus        35 ~L~vGv~~~~ppfs~~d~~G~~~GfDV-----Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~  106 (342)
                      +|=+|...+..-......-.+.+|.|+     +.+++.+....-  ..++|+..++.+. + +.++++|++.+..+.
T Consensus        25 VLDiGCGtG~~~~~la~~~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~~~~~~d~~~l-~-~~d~~fD~v~~~~~l   97 (239)
T 1xxl_A           25 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESL-P-FPDDSFDIITCRYAA   97 (239)
T ss_dssp             EEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBC-C-SCTTCEEEEEEESCG
T ss_pred             EEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CCCEEEECCCCCC-C-CCCCCEEEEHHCCCH
T ss_conf             99958868599999997099799997999999999986543056--5400010222356-8-888736530204512


No 163
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=27.41  E-value=28  Score=14.35  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CEEEEEEECCCCCCEE---ECCCCCEEEEHHH-----HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC
Q ss_conf             9499987178988306---8898988015099-----99999999679822025998143100267743962799812
Q gi|254780170|r   34 GFLKCGINTGLVGFAE---VKANGDWKGFDVD-----FCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN  103 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~---~d~~G~~~GfDVD-----l~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~  103 (342)
                      .+|-+|+..++-....   ..++|+.+.+|+|     ++|..-...+.+..+|+++.-+..+.++.|..+.+|++.-.
T Consensus        59 ~vlEiGt~~G~stl~la~al~~~g~l~tIE~~~e~~~~Ar~~~~~ag~~~~rv~~i~gda~e~L~~l~~~~fDlVfiD  136 (221)
T 3dr5_A           59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCEEEEC
T ss_conf             899972805799999998479997899998999999999999996688762467732778998787434787779975


No 164
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=26.95  E-value=29  Score=14.30  Aligned_cols=13  Identities=15%  Similarity=0.299  Sum_probs=5.4

Q ss_pred             CCCCCCEEEEEEC
Q ss_conf             2234402346302
Q gi|254780170|r  121 ITYFDGQGFIMHK  133 (342)
Q Consensus       121 ~~~~dgq~~lVrk  133 (342)
                      |.+.+|--++|..
T Consensus       117 p~~~~Gd~v~vd~  129 (189)
T 2fjr_A          117 AIRSEGKIYFVDK  129 (189)
T ss_dssp             EEEETTEEEEEET
T ss_pred             CEECCCCEEEEEC
T ss_conf             6857994999929


No 165
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=26.89  E-value=27  Score=14.50  Aligned_cols=52  Identities=21%  Similarity=0.368  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH
Q ss_conf             9998877443311212330152089886226717788762358876503337998679999
Q gi|254780170|r  238 YNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR  298 (342)
Q Consensus       238 ~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~  298 (342)
                      +..-.|+...  .|+..||+...+...... ..|....+.      .+.+.||++.+|...
T Consensus        10 R~~~gltq~e--lA~~~gis~~~~~~~e~g-~~~~~~~l~------~ia~~l~v~~~~l~~   61 (69)
T 1r69_A           10 RIQLGLNQAE--LAQKVGTTQQSIEQLENG-KTKRPRFLP------ELASALGVSVDWLLN   61 (69)
T ss_dssp             HHHTTCCHHH--HHHHHTSCHHHHHHHHTT-SCSSCTTHH------HHHHHTTCCHHHHHH
T ss_pred             HHHCCCCHHH--HHHHCCCCHHHHHHHHCC-CCCCHHHHH------HHHHHHCCCHHHHHC
T ss_conf             9994999999--988639899999999869-998999999------999996988999828


No 166
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125}
Probab=26.52  E-value=29  Score=14.25  Aligned_cols=73  Identities=16%  Similarity=0.072  Sum_probs=46.1

Q ss_pred             HHHCCEEEEEEECCCCCCEEE--CCCCCEEEEHHH-----HHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-CCCEEEEE
Q ss_conf             985794999871789883068--898988015099-----9999999967982202599814310026774-39627998
Q gi|254780170|r   30 IKKRGFLKCGINTGLVGFAEV--KANGDWKGFDVD-----FCRALSSAIFDDPSKIQYLPLNAKERFLALQ-SKQIDILS  101 (342)
Q Consensus        30 Vk~rG~L~vGv~~~~ppfs~~--d~~G~~~GfDVD-----l~raiAaal~gd~~kVe~v~~~~~~rf~aL~-sG~vDil~  101 (342)
                      .+.+-+|-+|+..++....+.  -++|+.+++|++     +++...+..+. ..+|+++..+..+..+.+. .+.+|++.
T Consensus        53 ~~~~~VLEIGtg~G~Stl~la~~~p~~~v~tiD~~~~~~~~A~~~~~~~gl-~~~I~~~~gda~d~l~~l~~~~~fD~if  131 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-ESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-TTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             HCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCCEEEECCHHHHHHHHCCCCCCCEEE
T ss_conf             589989996112129999999878997799997048999999999999742-1211265332877777511357762899


Q ss_pred             EC
Q ss_conf             12
Q gi|254780170|r  102 RN  103 (342)
Q Consensus       102 ~~  103 (342)
                      -.
T Consensus       132 iD  133 (233)
T 2gpy_A          132 ID  133 (233)
T ss_dssp             EE
T ss_pred             EC
T ss_conf             72


No 167
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, fatty acid biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii}
Probab=26.42  E-value=29  Score=14.24  Aligned_cols=13  Identities=38%  Similarity=0.470  Sum_probs=7.0

Q ss_pred             CCEEEEEECCCCC
Q ss_conf             9627998124325
Q gi|254780170|r   95 KQIDILSRNTDWT  107 (342)
Q Consensus        95 G~vDil~~~~T~T  107 (342)
                      |++|+++.+..++
T Consensus        83 g~iDilVnnAG~~   95 (249)
T 3f9i_A           83 SNLDILVCNAGIT   95 (249)
T ss_dssp             SCCSEEEECCC--
T ss_pred             CCCCEEEECCCCC
T ss_conf             9998999899766


No 168
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=26.41  E-value=29  Score=14.24  Aligned_cols=43  Identities=12%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH
Q ss_conf             1212330152089886226717788762358876503337998679999
Q gi|254780170|r  250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR  298 (342)
Q Consensus       250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~  298 (342)
                      .|+.+||+...+.++......+...-.+      .++..+|.+.+|-.+
T Consensus        30 LA~~lgvs~~~is~i~~Gk~~it~~~a~------rL~~~fg~s~~~wl~   72 (113)
T 2eby_A           30 LAELLHVHRNSVSALINNNRKLTTEMAF------RLAKVFDTTVDFWLN   72 (113)
T ss_dssp             HHHHHTSCHHHHHHHHTTSSCCCHHHHH------HHHHHHTCCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCCHHHHH------HHHHHHCCCHHHHHH
T ss_conf             9999698999999999387789999999------999998958999998


No 169
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis}
Probab=25.69  E-value=30  Score=14.16  Aligned_cols=55  Identities=11%  Similarity=0.089  Sum_probs=37.8

Q ss_pred             HCCCCEEEEECCCH-HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf             17862034313426-9999999986299850787479899999987396029982504
Q gi|254780170|r  143 LSGASICVQAGTTT-ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS  199 (342)
Q Consensus       143 L~G~~I~v~~GTT~-e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s  199 (342)
                      .+..+|-++-.... -..+...++..  .+++..+.+..++++.+.....|.+..|..
T Consensus         5 ~~~~~ILiVDDd~~~~~~l~~~L~~~--g~~v~~a~~~~~Al~~l~~~~~dliilD~~   60 (154)
T 2rjn_A            5 YKNYTVMLVDDEQPILNSLKRLIKRL--GCNIITFTSPLDALEALKGTSVQLVISDMR   60 (154)
T ss_dssp             CSCCEEEEECSCHHHHHHHHHHHHTT--TCEEEEESCHHHHHHHHTTSCCSEEEEESS
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHCCCCCEEEECCC
T ss_conf             99998999979999999999999987--998999899999999986289988996688


No 170
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=25.18  E-value=31  Score=14.10  Aligned_cols=117  Identities=11%  Similarity=0.101  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH---CCCEEEEEECCCCCC---------------CCHHCCCCCCCCCC
Q ss_conf             999999999967982202599814310026774---396279981243253---------------20110278435322
Q gi|254780170|r   61 VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQ---SKQIDILSRNTDWTL---------------LREISLGLAFRPIT  122 (342)
Q Consensus        61 VDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~---sG~vDil~~~~T~T~---------------~Rd~~~~v~Fs~~~  122 (342)
                      .||++.||..++-...++++....-.+..-.+.   .|+ |+.+-..+..+               .|.....+...-||
T Consensus        42 ~eLA~~ia~~Lg~~l~~~~~~~FpDGE~~v~i~e~Vrg~-dV~iiqs~~~~~nd~lmELll~i~Alr~~gA~~ItlViPY  120 (379)
T 2ji4_A           42 MELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGK-DVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPY  120 (379)
T ss_dssp             GHHHHHHHHHHTCCCCCEEEEECTTSCEEEEECSCCTTC-EEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             HHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf             999999999959930503889879997899879876898-3899968999815899999999999987405647999335


Q ss_pred             C-CCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECC
Q ss_conf             3-440234630211347536417862034313426999999998629985078747989999998739602998250
Q gi|254780170|r  123 Y-FDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDI  198 (342)
Q Consensus       123 ~-~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~  198 (342)
                      | |.-|-   |+.                ..|...-..+.+.+...|.+ .+++++-....++.+....++-+..-.
T Consensus       121 l~YsRQD---r~~----------------~~~~i~a~~va~~L~~~gvd-~vitvDlH~~~i~~ff~~p~~~l~~~~  177 (379)
T 2ji4_A          121 FPYSKQC---KMR----------------KRGSIVSKLLASMMCKAGLT-HLITMDLHQKEIQGFFNIPVDNLRASP  177 (379)
T ss_dssp             CSSCCC--------------------------CCHHHHHHHHHHHTTCC-EEEEESCSSGGGGGGSSSCEEEECCHH
T ss_pred             CCCCCCC---CCC----------------CCCCCHHHHHHHHHHHCCCC-CCEEEECCCHHHHCCCCCCCCCCCCHH
T ss_conf             5334054---000----------------35640688998788752876-322453276776327789977532307


No 171
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=25.13  E-value=30  Score=14.17  Aligned_cols=42  Identities=19%  Similarity=0.293  Sum_probs=27.0

Q ss_pred             HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHH
Q ss_conf             1212330152089886226717788762358876503337998679999
Q gi|254780170|r  250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYR  298 (342)
Q Consensus       250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~  298 (342)
                      .|+..||+...+...... ..|....++      .+.+.||++.+|...
T Consensus        22 lA~~~gis~~~is~~e~g-~~~~~~~l~------~ia~~l~v~~~~Ll~   63 (71)
T 1zug_A           22 LATKAGVKQQSIQLIEAG-VTKRPRFLF------EIAMALNCDPVWLQY   63 (71)
T ss_dssp             HHHHHTSCHHHHHHHHTT-CCSSCSTHH------HHHHHTTSCHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHCC-CCCCHHHHH------HHHHHHCCCHHHHHC
T ss_conf             978419899999999879-999999999------999994997999841


No 172
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=25.07  E-value=31  Score=14.08  Aligned_cols=14  Identities=14%  Similarity=0.105  Sum_probs=6.1

Q ss_pred             CCEEEECCHHHHHH
Q ss_conf             50787479899999
Q gi|254780170|r  171 YHPIVFERVEEIDA  184 (342)
Q Consensus       171 ~~~v~~~~~~~a~~  184 (342)
                      .+++.+|-.++++.
T Consensus       196 ~~V~~vDi~~~~l~  209 (373)
T 2qm3_A          196 KRIAVLDIDERLTK  209 (373)
T ss_dssp             SEEEEECSCHHHHH
T ss_pred             CEEEEEECCHHHHH
T ss_conf             98999979799999


No 173
>1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} SCOP: c.24.1.2
Probab=24.66  E-value=31  Score=14.04  Aligned_cols=53  Identities=8%  Similarity=-0.046  Sum_probs=35.4

Q ss_pred             CCHHHH-CCCCEEEEECCCHHHHHHHHHHH-CCCCCCEEEE--CC-HHHHHHHHHCCCEEEEEE
Q ss_conf             753641-78620343134269999999986-2998507874--79-899999987396029982
Q gi|254780170|r  138 SSVSQL-SGASICVQAGTTTELTLADYFKA-HNMKYHPIVF--ER-VEEIDAAYRAHRCDAYTG  196 (342)
Q Consensus       138 ~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~-~~~~~~~v~~--~~-~~~a~~al~~Gr~DA~~~  196 (342)
                      +...+| .|-++....||.      +++.+ .+++.+.+.-  +. ..+......+|++|.++.
T Consensus        21 ~~~~~ll~gf~i~AT~GTa------~~L~~~~gi~v~~v~k~~~gg~p~i~d~I~~g~I~lVIn   78 (126)
T 1wo8_A           21 LRHKDVLARYPLLATGTTG------ARIQEATGLAVERVLSGPLGGDLQIGARVAEGKVLAVVF   78 (126)
T ss_dssp             HHTHHHHTTSCEEECHHHH------HHHHHHHCCCCEECCCTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHCCCEEEEEHHHH------HHHHHHCCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEE
T ss_conf             9999997497599603299------999983496489997458899989999998599778998


No 174
>2jna_A Putative secreted protein; GFT-homodimer, PSI-2, alpha+beta, structural genomics, protein structure initiative; NMR {Salmonella typhimurium LT2} SCOP: d.230.6.1
Probab=23.40  E-value=0.87  Score=23.91  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=22.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf             9138999999999999840124421689998579
Q gi|254780170|r    1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRG   34 (342)
Q Consensus         1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG   34 (342)
                      |||+++++++++.++++++.++..-+-++.+.-+
T Consensus         1 MKk~~i~aa~~l~~~Sf~a~AA~eit~~qa~~~~   34 (104)
T 2jna_A            1 MKKRIIAAALLATVASFSTLAAEQVSKQEISHFK   34 (104)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCSCCCCCHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
T ss_conf             9569999999999987888888875999884048


No 175
>2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein; polyamine binding, syphilis, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=22.97  E-value=34  Score=13.83  Aligned_cols=207  Identities=14%  Similarity=0.139  Sum_probs=101.3

Q ss_pred             CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHCCC--EEEEEECCCCC---
Q ss_conf             94999871789883068898988015099999999996798220259981431-0026774396--27998124325---
Q gi|254780170|r   34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAK-ERFLALQSKQ--IDILSRNTDWT---  107 (342)
Q Consensus        34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~-~rf~aL~sG~--vDil~~~~T~T---  107 (342)
                      .+|++-.-.+|              .+-++.++.-++-+   .||+++..+.. ..+..|++|.  +||++.+..+.   
T Consensus        25 ~~L~v~~W~~y--------------~~~~~i~~Fe~~~g---IkV~~~~~~~~~~~~~kl~ag~~~~Dvv~~~~~~~~~~   87 (343)
T 2v84_A           25 DVLYLYNWTYY--------------TPTSLIKKFEQQYN---VQVVYDDYASNEDMFAKLSIGASGYDLVVPSGDFVSIM   87 (343)
T ss_dssp             CEEEEEEETTT--------------SCHHHHHHHHHHHT---CEEEEEEESCHHHHHHHHSSSCCSCSEECCBHHHHHHH
T ss_pred             CEEEEEECCCC--------------CCHHHHHHHHHHHC---CEEEEEECCCHHHHHHHHHCCCCCCCEEEECHHHHHHH
T ss_conf             98999947774--------------79899999999979---88999958998999999982899999899798999999


Q ss_pred             ----------CCCHH-----------C----CCCCCCCCCCCCCEEEEEECC---CCCCCHHHHCC----CCEEEEECCC
Q ss_conf             ----------32011-----------0----278435322344023463021---13475364178----6203431342
Q gi|254780170|r  108 ----------LLREI-----------S----LGLAFRPITYFDGQGFIMHKK---KGISSVSQLSG----ASICVQAGTT  155 (342)
Q Consensus       108 ----------~~Rd~-----------~----~~v~Fs~~~~~dgq~~lVrk~---~~i~s~~dL~G----~~I~v~~GTT  155 (342)
                                .++..           .    .+-.++.||.+...+++.+++   ...+++++|..    .++++....+
T Consensus        88 ~~~gll~~ld~~~~~~~~~i~~~~~~~~~~~~g~~y~vP~~~~~~~l~YNkd~~~~~p~tw~~l~~~~~~g~~~~~~~~~  167 (343)
T 2v84_A           88 KRKHLLEKIDLSKIPNVQFIKESVRARIAYDPKMEYSVPYYLGAAGIAVNKKAVPSYARTWSIFSRKDLAYRMSMMDDMR  167 (343)
T ss_dssp             HHTTCEECCCGGGCGGGGGBCHHHHHHCTTSTTCSSCEEEEEECCEEEEETTTCCSCCSSGGGGGCGGGTTSEEECSCHH
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEHHHCCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf             97799654784554105440366531331079984787888532589986311588755088876787526766678626


Q ss_pred             H-----------------HHHHHH---HHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHC
Q ss_conf             6-----------------999999---99862998507874798999999873960299825047999998367800100
Q gi|254780170|r  156 T-----------------ELTLAD---YFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHV  215 (342)
Q Consensus       156 ~-----------------e~~l~~---~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~  215 (342)
                      .                 ...+.+   .+. ...+.....+.+ ++...++.+|++.+...-............+++--.
T Consensus       168 ~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (343)
T 2v84_A          168 EVMGAALASLGYNVNTKNEQELAQAAILVT-DHWKPNLVKFDS-DGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDF  245 (343)
T ss_dssp             HHHHHHHHHTTCCTTCCCHHHHHHHHHHHH-HHTGGGEEEECS-SSHHHHHHHTSCSEEEECHHHHHHHSCGGGGGGEEE
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHCCCCCCCCC-HHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCEEE
T ss_conf             799999998388868899899999999999-864545432565-668889865977999970899999999853998589


Q ss_pred             CCCCCCCCCCE---EEECCCCCH---HHHHHHHHHHH---HHHHHHHHHCCHHH
Q ss_conf             25644423710---100027775---79999887744---33112123301520
Q gi|254780170|r  216 ILPDIISKSPL---APAIIQGDT---EWYNIVSWTHY---AMVTAEELGITQKN  260 (342)
Q Consensus       216 il~e~iskEPl---g~avr~gD~---~w~d~V~W~~~---ali~Aee~git~~n  260 (342)
                      +.|.--. -+.   +++|.++=.   .=..+++|.+.   +...+++.|..+.+
T Consensus       246 ~~P~e~g-~~~~~~~~~I~k~akn~e~A~~Fi~fllspe~q~~~~~~~g~~~~~  298 (343)
T 2v84_A          246 FIPQDVA-SPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTI  298 (343)
T ss_dssp             ECCTTTT-CEEEEEEEBEETTCSCHHHHHHHHHHHTSHHHHHHHHHHHTCCCSS
T ss_pred             EECCCCC-EEEEEEEEHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf             9327783-5644431112158999999999999965999999999976789853


No 176
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=22.95  E-value=34  Score=13.83  Aligned_cols=51  Identities=22%  Similarity=0.346  Sum_probs=35.2

Q ss_pred             HHHHC--CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCH-------HHHHHHHHCCCEEEEEE
Q ss_conf             36417--86203431342699999999862998507874798-------99999987396029982
Q gi|254780170|r  140 VSQLS--GASICVQAGTTTELTLADYFKAHNMKYHPIVFERV-------EEIDAAYRAHRCDAYTG  196 (342)
Q Consensus       140 ~~dL~--G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~-------~~a~~al~~Gr~DA~~~  196 (342)
                      ...|.  |-+|....||      .+|++++|++.+.|.....       .+....+.+|++|.++.
T Consensus        43 a~~L~~lGf~i~AT~GT------a~~L~~~gi~~~~V~~~~~~~~~~~~~~i~~~i~~g~i~lVIN  102 (143)
T 2yvq_A           43 AEQLHNEGFKLFATEAT------SDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVIN  102 (143)
T ss_dssp             HHHHHTTTCEEEEEHHH------HHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEE
T ss_pred             HHHHHHCCCEEEECHHH------HHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCEEEEEE
T ss_conf             99999749678973589------9999975985189985213676667433999987597599998


No 177
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=21.98  E-value=16  Score=15.98  Aligned_cols=19  Identities=21%  Similarity=0.418  Sum_probs=10.6

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             9138999999999999840
Q gi|254780170|r    1 MYKDFFVSILCLIILFFTS   19 (342)
Q Consensus         1 M~K~~l~~~l~l~~~~~~~   19 (342)
                      |||+++..+++.+++.+..
T Consensus         1 mkk~l~~~~~~~~~~~~~~   19 (130)
T 2a3m_A            1 MRKSLFAVMVLALVAAFAL   19 (130)
T ss_dssp             -------------------
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             9049999999999999998


No 178
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=21.83  E-value=36  Score=13.69  Aligned_cols=27  Identities=22%  Similarity=0.385  Sum_probs=13.5

Q ss_pred             HHHHHCCHHHHHHHHHC-CCCHHHHHHH
Q ss_conf             21233015208988622-6717788762
Q gi|254780170|r  251 AEELGITQKNINQVSKD-TTNPDVQRFL  277 (342)
Q Consensus       251 Aee~git~~nv~~~~~~-s~~p~i~r~l  277 (342)
                      |+..||++..|..+... ..+|.+.++.
T Consensus        38 A~~~gvs~~~is~iE~G~~~~~s~~~L~   65 (83)
T 2a6c_A           38 AELLGVTQPRVSDLMRGKIDLFSLESLI   65 (83)
T ss_dssp             HHHHTSCHHHHHHHHTTCGGGCCHHHHH
T ss_pred             HHHHCCCHHHHHHHHCCCCCCCCHHHHH
T ss_conf             9998778999999987999998999999


No 179
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.83  E-value=36  Score=13.69  Aligned_cols=51  Identities=16%  Similarity=0.213  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHC-CCCHHHHHHHCCCCCCCCHHHCCCCHHHH
Q ss_conf             999887744331121233015208988622-67177887623588765033379986799
Q gi|254780170|r  238 YNIVSWTHYAMVTAEELGITQKNINQVSKD-TTNPDVQRFLGIDKSSNIGEALGLTKDWT  296 (342)
Q Consensus       238 ~d~V~W~~~ali~Aee~git~~nv~~~~~~-s~~p~i~r~lg~~~~~~~g~~lgl~~~~~  296 (342)
                      +.--+|+...  .|+..||+..++..+... +.+|.+..+.      .+...||++.++.
T Consensus        16 r~~~gls~~~--LA~~~Gis~~tis~~e~g~~~~p~~~~l~------kia~~l~v~~~~l   67 (78)
T 3b7h_A           16 ITQQNLTINR--VATLAGLNQSTVNAMFEGRSKRPTITTIR------KVCGTLGISVHDF   67 (78)
T ss_dssp             HHHTTCCHHH--HHHHHTCCHHHHHHHHCTTCCCCCHHHHH------HHHHHHTCCHHHH
T ss_pred             HHHCCCCHHH--HHHHHCCCHHHHHHHHCCCCCCCHHHHHH------HHHHHHCCCHHHH
T ss_conf             9993998999--99988939999999986998896899999------9999989939999


No 180
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=21.56  E-value=27  Score=14.41  Aligned_cols=56  Identities=13%  Similarity=0.153  Sum_probs=35.9

Q ss_pred             CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEE
Q ss_conf             202599814310026774396279981243253201102784353223440234630
Q gi|254780170|r   76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMH  132 (342)
Q Consensus        76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVr  132 (342)
                      .+|.+...-+..-+.++.+|++|+..+.--++.+.....++. ..+...++..++|.
T Consensus        29 ~~v~~~~~GSg~G~~~~~~G~~dia~ssr~l~~~e~~~~~~~-~~~~~~~~~~~~v~   84 (321)
T 1ixh_A           29 NKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLF-QFPTVIGGVVLAVN   84 (321)
T ss_dssp             CEEEEEECCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEE-EEEEEEEEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHCCCCCEEECCHHHCHHHHHHCCCC-EEEEEEEEEEEEEE
T ss_conf             868997478699999997499838982842589999776992-13788765899995


No 181
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=21.29  E-value=37  Score=13.62  Aligned_cols=13  Identities=23%  Similarity=0.412  Sum_probs=7.8

Q ss_pred             CCEEEEEECCCCC
Q ss_conf             9627998124325
Q gi|254780170|r   95 KQIDILSRNTDWT  107 (342)
Q Consensus        95 G~vDil~~~~T~T  107 (342)
                      |++|+++.|..++
T Consensus        75 g~iDilVnnAG~~   87 (244)
T 1cyd_A           75 GPVDLLVNNAALV   87 (244)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
T ss_conf             9998999899899


No 182
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=21.28  E-value=37  Score=13.62  Aligned_cols=60  Identities=12%  Similarity=0.162  Sum_probs=44.9

Q ss_pred             CCHHHHCCCCEEEEECCCH-HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf             7536417862034313426-9999999986299850787479899999987396029982504
Q gi|254780170|r  138 SSVSQLSGASICVQAGTTT-ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS  199 (342)
Q Consensus       138 ~s~~dL~G~~I~v~~GTT~-e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s  199 (342)
                      .....|.+.+|-+...... -..+...+...|  +++..+++.+++++.+.....|.++.|..
T Consensus         7 ~~~~~lr~lrILiVDD~~~~r~~l~~~L~~~g--~~v~~a~~~~~al~~l~~~~~dlii~D~~   67 (143)
T 3m6m_D            7 RHRARVRSMRMLVADDHEANRMVLQRLLEKAG--HKVLCVNGAEQVLDAMAEEDYDAVIVDLH   67 (143)
T ss_dssp             --------CEEEEECSSHHHHHHHHHHHHC----CEEEEESSHHHHHHHHHHSCCSEEEEESC
T ss_pred             CHHCCCCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCCCEEEEECC
T ss_conf             00215689979999588999999999999879--99999899999999975289999998388


No 183
>3eki_A High affinity transport system protein P37; TPP, cell membrane, lipoprotein, membrane, transport protein, palmitate; HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A* 3e78_A*
Probab=20.82  E-value=24  Score=14.80  Aligned_cols=117  Identities=10%  Similarity=0.030  Sum_probs=55.3

Q ss_pred             ECCCCCCCHHHHCCCCEEEEECCCHHHHH--HHHHHHC-CCCCCEE------EECCHHHHHHHHHCCCEEEEEE--CCHH
Q ss_conf             02113475364178620343134269999--9999862-9985078------7479899999987396029982--5047
Q gi|254780170|r  132 HKKKGISSVSQLSGASICVQAGTTTELTL--ADYFKAH-NMKYHPI------VFERVEEIDAAYRAHRCDAYTG--DISA  200 (342)
Q Consensus       132 rk~~~i~s~~dL~G~~I~v~~GTT~e~~l--~~~~~~~-~~~~~~v------~~~~~~~a~~al~~Gr~DA~~~--D~s~  200 (342)
                      .++...++++||.+++|++..-|++-.++  ..+++++ +.++...      .-..+......+..|.+|+.+.  |...
T Consensus       232 ~kaw~~K~WeDf~~~~I~~~s~SSaSGYiyP~alLkkhFgk~~~dl~~~~~~~~~~y~~s~~~vi~g~~d~~i~FdD~~s  311 (403)
T 3eki_A          232 KKAWNDKDWNTFRNFGILHGKDNSSSKFKLEETILKNHFQNKFTTLNEDRSAHPNAYKQKSADTLGTLDDFHIAFSEEGS  311 (403)
T ss_dssp             HHHHHTTCHHHHHHTCEEECCTTCTTTTHHHHHHHHHHSTTSCSCHHHHHHHSGGGEEECCGGGGGGCTTCCEEEEETTG
T ss_pred             HHHHCCCCHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHH
T ss_conf             75121289889848956986798860128899999997088855543101046664303677775046772173041133


Q ss_pred             HHHHHHH--CCC---C---HHHCCCC--CCCCCCCEEEECCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf             9999983--678---0---0100256--444237101000277-757999988774433112
Q gi|254780170|r  201 LYALKLT--NDR---P---SEHVILP--DIISKSPLAPAIIQG-DTEWYNIVSWTHYAMVTA  251 (342)
Q Consensus       201 La~~~~~--~~~---p---~~~~il~--e~iskEPlg~avr~g-D~~w~d~V~W~~~ali~A  251 (342)
                      . .+...  ...   |   ++.+|+.  ++|-..  .++||++ ++++.+.+.=++..|-..
T Consensus       312 ~-awt~~k~~~k~~~~~~n~kVrVI~~T~pIPnD--~Isvrk~Ls~e~~~~IskAfinl~kt  370 (403)
T 3eki_A          312 F-AWTHNKSATKPFETKANEKMEALIVTNPIPYD--VGVFRKSVNQLEQNLIVQTFINLAKN  370 (403)
T ss_dssp             G-GGSCTTCTTCTTCCCTTCEEEEEEECCCBCCC--EEEEETTBCHHHHHHHHHHHHHHHHT
T ss_pred             H-HCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--EEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf             4-23220025675677777728999958887688--38990899999999999999987506


No 184
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=20.71  E-value=38  Score=13.54  Aligned_cols=164  Identities=15%  Similarity=0.084  Sum_probs=66.4

Q ss_pred             CCCCHHHHCCCCEEEEECCCHH-HHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------H
Q ss_conf             3475364178620343134269-9999999862998507874798999999873960299825047999998-------3
Q gi|254780170|r  136 GISSVSQLSGASICVQAGTTTE-LTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKL-------T  207 (342)
Q Consensus       136 ~i~s~~dL~G~~I~v~~GTT~e-~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~-------~  207 (342)
                      .++...+|+||+|-|.-|+..- ..+...|.++|.++- +.+.+.+.....+....+.++..|.+.-.....       .
T Consensus        18 ~~~~~~~l~gk~ilITGgs~GIG~aia~~la~~G~~Vi-i~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   96 (260)
T 3gem_A           18 YFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVI-ISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQ   96 (260)
T ss_dssp             ---------CCCEEESSTTSHHHHHHHHHHHHTTCCEE-EEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             66687686989899978967999999999998899899-99798289999998579879993079999999999999997


Q ss_pred             CCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHH
Q ss_conf             67800100256444237101000277757999988774433112123301520898862267177887623588765033
Q gi|254780170|r  208 NDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGE  287 (342)
Q Consensus       208 ~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~  287 (342)
                      .... |..|-.-.+   +++.......++|....+=-+.+.+.     +++.-+..|.+ ..++.|   +-   ......
T Consensus        97 ~g~i-DilVnnAg~---~~~~~~~~~~~~~~~~~~vNl~~~~~-----l~~~~~~~m~~-~~~g~i---i~---isS~~~  160 (260)
T 3gem_A           97 TSSL-RAVVHNASE---WLAETPGEEADNFTRMFSVHMLAPYL-----INLHCEPLLTA-SEVADI---VH---ISDDVT  160 (260)
T ss_dssp             CSCC-SEEEECCCC---CCCCCTTCHHHHHHHHHHHHTHHHHH-----HHHHHHHHHHT-SSSCEE---EE---ECCGGG
T ss_pred             HCCC-EEEEECCCC---CCCCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-CCCCCE---EE---EECHHH
T ss_conf             0995-099978823---67888779999999999886334789-----99999876430-377843---89---852132


Q ss_pred             HCCCCHHHHHHHHHH-CCCHHHHHHHHCCC
Q ss_conf             379986799999997-18699987886488
Q gi|254780170|r  288 ALGLTKDWTYRIIRH-MGNYGEMFDRNLGN  316 (342)
Q Consensus       288 ~lgl~~~~~~~~i~~-vGNYgei~~rnlg~  316 (342)
                      ..+.+.-.+|-+-|+ +=.+-..+.+.|++
T Consensus       161 ~~~~~~~~~Y~asKaal~~ltk~lA~el~~  190 (260)
T 3gem_A          161 RKGSSKHIAYCATKAGLESLTLSFAARFAP  190 (260)
T ss_dssp             GTCCSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             578999706899999999999999999789


Done!