RPSBLAST alignment of GI: 254780170 and protein with PDBid: 1pb7

>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292

 Score = 68.4 bits (166), Expect = 2e-12
 Identities = 29/236 (12%), Positives = 59/236 (25%), Gaps = 21/236 (8%)

Query: 18  TSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAI------ 71
                    +     +  +  G N    G           GF +D    L+  +      
Sbjct: 25  DGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEV 84

Query: 72  --------FDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITY 123
                                       L S Q D++         R     + F     
Sbjct: 85  HLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQY--IEFSKPFK 142

Query: 124 FDGQGFIMHKKKGISSVSQL--SGASICVQAGTTTELTLADYFKAHNMK---YHPIVFER 178
           + G   ++ K   I+ ++       S      T  + ++  YF+        Y  +    
Sbjct: 143 YQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHN 202

Query: 179 VEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGD 234
            E    A +A R +     I     L+    +  + V   ++  +S     + +  
Sbjct: 203 YESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDS 258