RPSBLAST alignment of GI: 254780170 and protein with PDBid: 3g41

>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} Length = 246

 Score = 79.2 bits (194), Expect = 1e-15
 Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 9/213 (4%)

Query: 30  IKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERF 89
           I +      G N     F  V A G+  GFD+D  +A+S  +     +++          
Sbjct: 6   IDRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDLAKAISEKL---GKQLEVREFAFDALI 62

Query: 90  LALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASIC 149
           L L+  +ID +      T  R+  + L             +  +      +     +S+ 
Sbjct: 63  LNLKKHRIDAILAGMSITPSRQKEIALLPYYGDEVQELMVVSKRSLETPVLPLTQYSSVA 122

Query: 150 VQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGD-ISALYALKLTN 208
           VQ GT  E  L          +         E+    R  +      +       LK   
Sbjct: 123 VQTGTYQEHYLLSQPGICVRSFDST-----LEVIMEVRYGKSPVAVLEPSVGRVVLKDFP 177

Query: 209 DRPSEHVILPDIISKSPLAPAIIQGDTEWYNIV 241
           +  +  + LP           + +   E    +
Sbjct: 178 NLVATRLELPPECWVLGCGLGVAKDRPEEIQTI 210