HHsearch alignment for GI: 254780171 and conserved domain: COG1176

>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].

Probab=98.75  E-value=1.7e-05  Score=52.24  Aligned_cols=98  Identities=20%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r  266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG  345 (398)
Q Consensus       266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig  345 (398)
T Consensus       153 ~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVFi~alG~fi~P~lLG  232 (287)
T COG1176         153 ETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPALGSFVTPALLG  232 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             33676899998659999999999983997899999875997654764203217718999999999897758899889856


Q ss_pred             HHHHHHHHHHHHHCCCCH
Q ss_conf             999999999998313775
Q gi|254780171|r  346 FADLVSVGGTIINQTGQA  363 (398)
Q Consensus       346 ~~dl~~~~~~~~~~t~~~  363 (398)
T Consensus       233 G~~~~~ig~lI~~q~~~~  250 (287)
T COG1176         233 GPKVLMIGNLIYQQFLSA  250 (287)
T ss_pred             CCCCCCHHHHHHHHHHHH
T ss_conf             975253999999998520