HHsearch alignment for GI: 254780171 and conserved domain: COG1177

>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.37  E-value=3.4e-09  Score=74.73  Aligned_cols=129  Identities=19%  Similarity=0.223  Sum_probs=87.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87899999999999778799999999983463678999896899899888987689999974104789999997549999
Q gi|254780171|r  263 SPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAV  342 (398)
Q Consensus       263 ~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~  342 (398)
T Consensus       132 ~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~  211 (267)
T COG1177         132 PGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITF  211 (267)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75299999999999866899999999973896799999876998888989976975279999999999999986778631


Q ss_pred             HHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999831377-58999999999999999999999999678
Q gi|254780171|r  343 AVGFADLVSVGGTIINQTGQ-AIEIILIWMFIYLSLSIMIALFMNRLNAK  391 (398)
Q Consensus       343 ~Ig~~dl~~~~~~~~~~t~~-~~e~~~i~~~~Yl~isl~iS~~~n~~~rr  391 (398)
T Consensus       212 f~~gp~~~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~~~~~~~  261 (267)
T COG1177         212 FLAGPGFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRLLRR  261 (267)
T ss_pred             EECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             13289987218999998655898199999999999999999999998643