HHsearch alignment for GI: 254780171 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.37 E-value=3.4e-09 Score=74.73 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999999778799999999983463678999896899899888987689999974104789999997549999
Q gi|254780171|r 263 SPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAV 342 (398)
Q Consensus 263 ~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~ 342 (398)
T Consensus 132 ~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~ 211 (267)
T COG1177 132 PGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITF 211 (267)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75299999999999866899999999973896799999876998888989976975279999999999999986778631
Q ss_pred HHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999831377-58999999999999999999999999678
Q gi|254780171|r 343 AVGFADLVSVGGTIINQTGQ-AIEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 343 ~Ig~~dl~~~~~~~~~~t~~-~~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
T Consensus 212 f~~gp~~~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~~~~~~~ 261 (267)
T COG1177 212 FLAGPGFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRLLRR 261 (267)
T ss_pred EECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13289987218999998655898199999999999999999999998643