HHsearch alignment for GI: 254780171 and conserved domain: COG4168
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].
Probab=96.13 E-value=0.093 Score=29.40 Aligned_cols=290 Identities=20% Similarity=0.210 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCHHC-CCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999-99999999972887781213-889--98443754223568652699999999999999
Q gi|254780171|r 24 VHNISVQIILALLLTVIFLWC-VNNVYNNMEKSNLSLGIGFL-SER--AGFEIDQGIVPYTSDSSYATAILVGFVNTFWL 99 (398)
Q Consensus 24 ~~~~~~Q~~~~~~~~~~~~~l-~~n~~~nl~~~gi~~gf~FL-~~~--agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~v 99 (398)
T Consensus 6 lR~ill~~ltLliLslvgfsl~~fdP~apl~~~~l~~g~~~y~~~Llq~dFGi-----s~~nG~pi~~~l~~vfPaT~EL 80 (321)
T COG4168 6 LRRILLLILTLLILTLVGFSLSYFDPHAPLQGASLWQGWVFYFNGLLQWDFGI-----SSINGQPIAEQLLEVFPATMEL 80 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHHHHHHCCCHHHH
T ss_conf 99999999999999999888521389973013069999999998885203252-----1569800899999866618999
Q ss_pred HHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHH-HCCCHHHHHHCCCCEEEEE
Q ss_conf 9999999999999999996--2642467877999-99999501469--999999999873-0121034441037203520
Q gi|254780171|r 100 AFSGMIPATIIGTLVGAGR--LSANKLVAWICRV-YVEVFRNIPPL--VVIFFLYKSVLS-VLPIPDHSIVLPFGMFLNN 173 (398)
Q Consensus 100 a~~givlatiLG~~iGi~R--lS~N~ll~~la~~-YVE~~RN~PLL--lql~fwy~~v~~-~lP~~~~~~~~~~~~flsn 173 (398)
T Consensus 81 C~~af~lal~~GiPlG~iagv~~~kw~d~~i~~is~~G~--SiPvFWlAl~ll~f~slh~~~~pv~-------------- 144 (321)
T COG4168 81 CFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGF--SIPVFWLALLLLLFFSLHLGWLPVS-------------- 144 (321)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCEECC--------------
T ss_conf 999999999984647988775423078899999998546--7459999999999999751411034--------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10003545355670046887788999999999999998643112233204554210103558999765444332210013
Q gi|254780171|r 174 RGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQ 253 (398)
Q Consensus 174 RGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~ 253 (398)
T Consensus 145 ------------------------------------------Gry--dLLY~ikpiTGfalIDawls~spyRt~~i---- 176 (321)
T COG4168 145 ------------------------------------------GRY--DLLYEIKPITGFALIDAWLSDSPYRTEMI---- 176 (321)
T ss_pred ------------------------------------------CCE--EEEEEECCCCCCHHHHHHHCCCCHHHHHH----
T ss_conf ------------------------------------------310--14565045466277889863770578999----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1112682148789999999999977879999999----998346367899989689989988898768999997410478
Q gi|254780171|r 254 FNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRS----GLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTS 329 (398)
Q Consensus 254 f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~----gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~n 329 (398)
T Consensus 177 ---------qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qNyikaA~trGlS~~~Ilr~hVlrNalPplIPq~g~ 247 (321)
T COG4168 177 ---------QSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTILRRHVLRNALPPLIPQLGL 247 (321)
T ss_pred ---------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf ---------99999988889999973479999999998999974248999996560355899999985047854441367
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999975499-999999999999-99998313775899999999----9999999999999999678
Q gi|254780171|r 330 QYLNLLKNSSL-AVAVGFADLVSV-GGTIINQTGQAIEIILIWMF----IYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 330 q~i~l~K~SSL-a~~Ig~~dl~~~-~~~~~~~t~~~~e~~~i~~~----~Yl~isl~iS~~~n~~~rr 391 (398)
T Consensus 248 qfs~mLTlamitEs~f~WPGiGRWLinAi~qqDy~sIsaGViViG~lviivnvlsdi~gam~~Plk~K 315 (321)
T COG4168 248 QFSTMLTLAMITESVFGWPGIGRWLINAIRQQDYASISAGVIVIGSLVIIVNVLSDILGAMANPLKHK 315 (321)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHCCEEEEEEEEEEHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999828975259999998760067663562798665441888899999972920103