HHsearch alignment for GI: 254780171 and conserved domain: PRK10352
>PRK10352 nickel transporter permease NikB; Provisional.
Probab=99.02 E-value=1.1e-07 Score=65.42 Aligned_cols=234 Identities=15% Similarity=0.225 Sum_probs=152.6
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 213889984437542235686526999999999999999999999999999999996-2642467877999999995014
Q gi|254780171|r 62 GFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNIP 140 (398)
Q Consensus 62 ~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~P 140 (398)
T Consensus 70 ~wl~~~l~GD~G~S---~~~~~pV~~~I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP 146 (314)
T PRK10352 70 TWLWKALHLDFGIS---FATQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMP 146 (314)
T ss_pred HHHHHHHEECCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999922457876---636886089888763788999999999999998599999872079721013105899878731
Q ss_pred HHHH--HHHHHHHHH-HHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6999--999999987-3012103444103720352010003545355670046887788999999999999998643112
Q gi|254780171|r 141 PLVV--IFFLYKSVL-SVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGK 217 (398)
Q Consensus 141 LLlq--l~fwy~~v~-~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~ 217 (398)
T Consensus 147 ~F~la~lli~~fa~~l~~~P~~------------------------g~~------------------------------- 171 (314)
T PRK10352 147 NFWLAFLLVMAFSVYLQWLPAM------------------------GYG------------------------------- 171 (314)
T ss_pred HHHHHHHHHHHHHHHCCCCCCC------------------------CCC-------------------------------
T ss_conf 9999999999999964767876------------------------778-------------------------------
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHH
Q ss_conf 233204554210103558999765444332210013111268214878999999999997787999999999834-6367
Q gi|254780171|r 218 ALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAV-PRGQ 296 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sV-pkGQ 296 (398)
T Consensus 172 -------------------------------------~~~-~l-iLP-----~l~l~l~~~a~~~r~~R~~~~e~l~~dy 207 (314)
T PRK10352 172 -------------------------------------GWQ-HI-ILP-----AVSIAFMSLAINARLLRASMLDVAGQRH 207 (314)
T ss_pred -------------------------------------CHH-HH-HCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------------------------------------336-54-111-----9999999999999999999999863299
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHCCCCHHHH-HHHHHHH
Q ss_conf 8999896899899888987689999974104789999997549999-9999999999-99998313775899-9999999
Q gi|254780171|r 297 MEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAV-AVGFADLVSV-GGTIINQTGQAIEI-ILIWMFI 373 (398)
Q Consensus 297 ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~-~Ig~~dl~~~-~~~~~~~t~~~~e~-~~i~~~~ 373 (398)
T Consensus 208 v~~ArakGls~~~i~~rh~lrnal~P~it~~~~~~~~ll~GavivE~iF~~pGlG~ll~~Ai~~rD~p~v~g~~l~~~~~ 287 (314)
T PRK10352 208 VTWARLRGLSDRQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVV 287 (314)
T ss_pred HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999869893136086528742988999999999998477610018754767599999999813889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999678743047
Q gi|254780171|r 374 YLSLSIMIALFMNRLNAKIALKEK 397 (398)
Q Consensus 374 Yl~isl~iS~~~n~~~rr~~l~er 397 (398)
T Consensus 288 ~v~~nli~Dily~~lDPRiR~~~g 311 (314)
T PRK10352 288 FVVCNLIVDLLNAALDPRIRRHEG 311 (314)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999999999964863157899