Query gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 398
No_of_seqs 235 out of 3177
Neff 6.6
Searched_HMMs 39220
Date Mon May 23 03:21:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780171.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4597 BatB ABC-type amino ac 100.0 0 0 890.6 22.3 388 10-397 10-397 (397)
2 COG0765 HisM ABC-type amino ac 100.0 0 0 443.1 26.9 210 83-395 12-221 (222)
3 PRK11123 arginine transporter 100.0 0 0 432.9 28.4 234 85-398 3-236 (238)
4 PRK09494 glnP glutamine ABC tr 100.0 0 0 430.6 27.7 211 83-395 9-219 (219)
5 PRK11122 artM arginine transpo 100.0 0 0 413.8 28.0 219 84-398 3-221 (222)
6 TIGR03003 ectoine_ehuD ectoine 100.0 0 0 386.9 16.7 205 84-392 14-218 (218)
7 COG4160 ArtM ABC-type arginine 100.0 0 0 363.7 15.3 222 83-398 7-228 (228)
8 TIGR03004 ectoine_ehuC ectoine 100.0 0 0 342.2 24.3 208 84-393 2-209 (216)
9 COG4215 ArtQ ABC-type arginine 100.0 0 0 328.9 24.4 226 82-398 3-230 (230)
10 PRK10782 DL-methionine transpo 100.0 1.7E-41 0 271.5 26.1 207 83-394 3-216 (217)
11 TIGR01726 HEQRo_perm_3TM amino 99.9 7.3E-27 1.9E-31 182.4 12.1 98 86-287 2-99 (99)
12 PRK11275 pstC phosphate transp 99.7 4.4E-13 1.1E-17 98.4 31.4 290 11-396 6-316 (319)
13 cd06261 TM_PBP2 Transmembrane 99.7 2.9E-15 7.3E-20 111.8 17.9 154 93-347 1-154 (190)
14 PRK11602 cysW sulfate/thiosulf 99.7 7.6E-13 1.9E-17 97.0 24.8 216 89-398 62-282 (291)
15 PRK10971 sulfate/thiosulfate t 99.6 2.9E-12 7.3E-17 93.5 27.3 132 265-397 139-275 (277)
16 COG2011 AbcD ABC-type metal io 99.6 1.7E-13 4.3E-18 101.0 20.3 208 81-393 6-220 (222)
17 PRK10160 taurine transporter s 99.6 1.4E-12 3.6E-17 95.4 24.3 260 11-393 8-268 (275)
18 PRK09497 potB spermidine/putre 99.6 1.8E-12 4.6E-17 94.7 23.1 133 266-398 150-284 (285)
19 PRK09421 modB molybdate ABC tr 99.6 8.3E-12 2.1E-16 90.6 26.0 216 88-395 6-226 (229)
20 COG3639 ABC-type phosphate/pho 99.6 9E-12 2.3E-16 90.4 24.9 192 84-392 82-281 (283)
21 TIGR03226 PhnU 2-aminoethylpho 99.6 7E-12 1.8E-16 91.1 23.5 217 89-392 90-308 (312)
22 pfam00528 BPD_transp_1 Binding 99.6 2.1E-12 5.4E-17 94.3 20.1 125 268-393 54-182 (183)
23 PRK11365 ssuC alkanesulfonate 99.6 2.1E-11 5.3E-16 88.2 25.0 207 67-393 40-250 (263)
24 PRK09500 potC spermidine/putre 99.6 1.7E-11 4.4E-16 88.7 24.0 126 266-392 128-255 (257)
25 COG0573 PstC ABC-type phosphat 99.5 9.2E-10 2.3E-14 78.2 30.0 271 19-395 16-309 (310)
26 TIGR03255 PhnV 2-aminoethylpho 99.5 1.2E-10 3E-15 83.7 25.2 130 264-393 141-271 (272)
27 COG0581 PstA ABC-type phosphat 99.5 1.5E-09 3.8E-14 76.9 28.0 154 89-346 69-225 (292)
28 PRK11268 pstA phosphate transp 99.5 2.1E-09 5.4E-14 76.0 27.9 212 12-344 18-231 (292)
29 PRK10683 putrescine transporte 99.5 9.7E-10 2.5E-14 78.1 26.1 233 66-391 73-311 (317)
30 PRK10592 putrescine transporte 99.4 9.8E-11 2.5E-15 84.1 19.9 129 266-395 140-270 (281)
31 COG1178 ThiP ABC-type Fe3+ tra 99.4 5.7E-10 1.5E-14 79.4 22.7 124 265-390 139-265 (540)
32 COG0600 TauC ABC-type nitrate/ 99.4 1.9E-09 4.7E-14 76.3 25.3 234 27-394 12-252 (258)
33 TIGR03416 ABC_choXWV_perm chol 99.4 4E-10 1E-14 80.4 20.3 166 92-368 87-254 (267)
34 TIGR03262 PhnU2 putative 2-ami 99.4 1.6E-08 4E-13 70.7 28.4 130 264-394 407-538 (546)
35 PRK09433 thiP thiamine transpo 99.4 7.2E-09 1.8E-13 72.7 25.9 122 271-393 410-533 (536)
36 COG1177 PotC ABC-type spermidi 99.4 3.4E-09 8.7E-14 74.7 24.1 129 263-391 132-261 (267)
37 COG1174 OpuBB ABC-type proline 99.3 5.7E-09 1.4E-13 73.4 23.6 126 260-394 88-216 (221)
38 TIGR02138 phosphate_pstC phosp 99.3 5.6E-08 1.4E-12 67.3 28.3 281 26-393 8-317 (317)
39 TIGR03262 PhnU2 putative 2-ami 99.3 5.5E-09 1.4E-13 73.4 22.3 80 266-345 133-212 (546)
40 PRK09881 ATP-dependent peptide 99.3 1E-07 2.6E-12 65.7 26.4 196 83-392 83-289 (296)
41 PRK09433 thiP thiamine transpo 99.2 4.7E-08 1.2E-12 67.8 23.4 127 266-394 139-270 (536)
42 COG1178 ThiP ABC-type Fe3+ tra 99.2 4.1E-08 1.1E-12 68.1 22.4 126 267-392 409-535 (540)
43 COG1175 UgpA ABC-type sugar tr 99.2 3.1E-07 7.9E-12 62.8 31.0 223 87-396 64-294 (295)
44 CHL00187 cysT sulfate transpor 99.2 6.2E-09 1.6E-13 73.2 16.9 161 89-353 51-211 (235)
45 PRK10913 dipeptide transporter 99.2 9.6E-08 2.4E-12 65.9 23.0 154 83-346 88-242 (300)
46 PRK10561 glycerol-3-phosphate 99.2 1.2E-07 3.2E-12 65.2 23.5 128 265-392 142-277 (280)
47 PRK10914 dipeptide transporter 99.2 4.6E-08 1.2E-12 67.8 20.6 261 61-396 67-339 (339)
48 PRK10417 nikC nickel transport 99.1 6.1E-07 1.6E-11 61.0 23.9 155 82-346 55-210 (272)
49 PRK10952 glycine betaine trans 99.1 5.4E-08 1.4E-12 67.4 17.5 222 123-369 88-312 (354)
50 PRK10998 malG maltose transpor 99.1 1.4E-06 3.6E-11 58.8 24.9 59 280-338 172-230 (296)
51 PRK09471 oppB oligopeptide tra 99.1 1.1E-07 2.7E-12 65.6 18.7 234 61-393 64-305 (306)
52 TIGR00974 3a0107s02c phosphate 99.0 7.5E-08 1.9E-12 66.6 17.1 189 27-327 9-200 (302)
53 PRK10352 nickel transporter pe 99.0 1.1E-07 2.9E-12 65.4 17.7 234 62-397 70-311 (314)
54 COG0555 CysU ABC-type sulfate 98.9 9.1E-09 2.3E-13 72.1 9.6 126 259-396 132-273 (274)
55 COG1173 DppC ABC-type dipeptid 98.9 4.8E-06 1.2E-10 55.6 28.5 201 80-393 68-283 (289)
56 PRK10999 malF maltose transpor 98.9 2.9E-06 7.5E-11 56.8 20.0 176 82-344 276-453 (520)
57 COG0601 DppB ABC-type dipeptid 98.9 7.8E-06 2E-10 54.3 22.4 238 62-396 67-317 (317)
58 TIGR02141 modB_ABC molybdate A 98.8 1.6E-07 4.1E-12 64.5 13.0 116 265-391 81-212 (212)
59 COG1176 PotB ABC-type spermidi 98.8 1.7E-05 4.3E-10 52.2 23.6 98 266-363 153-250 (287)
60 PRK10973 glycerol-3-phosphate 98.4 0.00012 3.1E-09 46.9 23.4 60 280-339 157-216 (281)
61 TIGR01581 Mo_ABC_porter NifC-l 98.4 2.4E-06 6.1E-11 57.4 8.8 83 258-351 96-178 (226)
62 TIGR01097 3A0109s02M phosphona 98.4 2.7E-05 6.9E-10 51.0 13.3 171 90-378 2-182 (192)
63 COG4149 ModC ABC-type molybdat 98.3 5.8E-06 1.5E-10 55.0 9.7 119 265-395 89-223 (225)
64 COG4176 ProW ABC-type proline/ 98.2 0.00033 8.3E-09 44.4 16.2 103 283-391 173-279 (290)
65 COG0395 UgpE ABC-type sugar tr 97.9 0.0016 4.1E-08 40.1 27.8 71 264-334 141-211 (281)
66 COG4209 LplB ABC-type polysacc 97.8 0.0015 3.9E-08 40.3 12.9 120 270-394 173-305 (309)
67 TIGR02139 permease_CysT sulfat 97.2 0.00047 1.2E-08 43.4 4.6 95 288-393 154-263 (265)
68 TIGR00969 3a0106s02 sulfate AB 97.2 7.1E-06 1.8E-10 54.5 -5.5 116 270-391 155-280 (280)
69 COG3833 MalG ABC-type maltose 97.1 0.019 4.9E-07 33.6 25.4 84 266-349 143-227 (282)
70 COG4208 CysW ABC-type sulfate 96.9 0.00015 3.7E-09 46.5 -0.3 50 269-318 150-199 (287)
71 COG4590 ABC-type uncharacteriz 96.7 0.042 1.1E-06 31.5 10.7 311 51-395 384-729 (733)
72 COG4132 ABC-type uncharacteriz 96.5 0.058 1.5E-06 30.6 25.1 105 282-391 163-276 (282)
73 TIGR02140 permease_CysW sulfat 96.3 0.00097 2.5E-08 41.5 0.4 176 123-318 3-195 (275)
74 COG4168 SapB ABC-type antimicr 96.1 0.093 2.4E-06 29.4 11.4 290 24-391 6-315 (321)
75 COG4986 ABC-type anion transpo 95.6 0.16 4E-06 28.0 12.7 68 262-330 382-449 (523)
76 COG4239 ABC-type uncharacteriz 95.6 0.16 4.1E-06 28.0 12.0 61 293-355 231-302 (341)
77 pfam03649 UPF0014 Uncharacteri 93.9 0.44 1.1E-05 25.3 19.2 90 266-367 129-218 (250)
78 TIGR02789 nickel_nikB nickel A 91.8 0.87 2.2E-05 23.5 13.9 247 128-396 51-311 (315)
79 COG4662 TupA ABC-type tungstat 89.2 1.5 3.7E-05 22.1 22.9 198 88-391 20-227 (227)
80 TIGR01253 thiP thiamine/thiami 89.1 1.5 3.8E-05 22.1 13.5 122 269-393 135-262 (519)
81 TIGR01726 HEQRo_perm_3TM amino 84.4 0.46 1.2E-05 25.2 1.3 62 181-242 3-65 (99)
82 COG4135 ABC-type uncharacteriz 81.3 3.6 9.2E-05 19.7 7.9 67 262-328 411-477 (551)
83 pfam02954 HTH_8 Bacterial regu 80.4 2.9 7.3E-05 20.3 4.1 33 282-314 7-39 (42)
84 TIGR02974 phageshock_pspF psp 78.5 3.3 8.4E-05 20.0 3.9 38 273-310 305-342 (349)
85 TIGR02790 nickel_nikC nickel A 72.1 6.5 0.00017 18.2 16.1 178 27-334 6-185 (258)
86 TIGR01817 nifA Nif-specific re 70.4 2.9 7.3E-05 20.3 2.0 18 296-313 546-563 (574)
87 PRK05700 fliQ flagellar biosyn 69.4 7.5 0.00019 17.8 7.4 60 84-143 5-88 (89)
88 COG4174 ABC-type uncharacteriz 63.9 9.6 0.00025 17.1 11.1 204 183-397 136-363 (364)
89 PTZ00042 stevor; Provisional 61.6 11 0.00027 16.9 4.1 47 343-392 244-290 (304)
90 PRK10365 transcriptional regul 60.6 11 0.00028 16.8 4.1 35 280-314 405-439 (441)
91 PRK09699 D-allose transporter 59.9 8.2 0.00021 17.6 2.6 78 58-138 66-146 (325)
92 PRK11608 pspF phage shock prot 58.6 12 0.0003 16.6 4.2 37 278-314 284-320 (325)
93 PRK11388 DNA-binding transcrip 56.1 13 0.00034 16.3 4.2 24 47-70 92-115 (639)
94 pfam03552 Cellulose_synt Cellu 55.7 13 0.00034 16.3 3.1 37 261-299 614-650 (716)
95 COG2928 Uncharacterized conser 50.5 16 0.00041 15.8 10.5 100 23-152 5-104 (222)
96 PRK10923 glnG nitrogen regulat 50.2 16 0.00042 15.7 4.2 36 279-314 428-463 (469)
97 pfam05297 Herpes_LMP1 Herpesvi 46.3 19 0.00048 15.4 8.1 11 142-152 33-43 (382)
98 cd06315 PBP1_ABC_sugar_binding 46.1 7.5 0.00019 17.8 0.6 13 47-59 72-84 (280)
99 COG3763 Uncharacterized protei 41.9 22 0.00056 14.9 3.0 20 96-115 2-21 (71)
100 pfam06850 PHB_depo_C PHB de-po 41.6 22 0.00057 14.9 2.7 23 293-315 149-173 (203)
101 PRK11361 acetoacetate metaboli 40.9 23 0.00058 14.8 4.2 36 279-314 416-451 (457)
102 pfam03342 Rhabdo_M1 Rhabdoviru 38.0 25 0.00065 14.6 3.2 35 291-326 146-180 (219)
103 pfam12273 RCR Chitin synthesis 37.1 26 0.00067 14.5 3.4 28 189-216 3-30 (124)
104 PRK07561 DNA topoisomerase I; 33.8 30 0.00076 14.1 2.3 19 295-313 290-308 (878)
105 pfam01527 Transposase_8 Transp 33.7 30 0.00076 14.1 4.1 40 276-316 7-46 (75)
106 PRK05022 anaerobic nitric oxid 33.3 30 0.00077 14.1 5.7 40 275-314 464-503 (510)
107 COG4171 SapC ABC-type antimicr 33.3 30 0.00077 14.1 19.4 76 264-353 160-235 (296)
108 PRK09138 DNA topoisomerase I; 30.9 33 0.00085 13.9 2.4 24 295-321 265-288 (887)
109 TIGR02885 spore_sigF RNA polym 30.3 30 0.00077 14.1 1.6 21 293-313 199-219 (231)
110 PRK07941 DNA topoisomerase I; 30.2 34 0.00087 13.8 2.1 20 294-313 302-321 (933)
111 pfam11382 DUF3186 Protein of u 29.6 35 0.00089 13.7 2.3 26 98-123 8-33 (307)
112 PRK06599 DNA topoisomerase I; 28.5 36 0.00093 13.6 2.4 26 293-321 264-289 (776)
113 COG1480 Predicted membrane-ass 27.9 37 0.00095 13.5 7.0 18 311-328 399-416 (700)
114 TIGR00776 RhaT RhaT L-rhamnose 27.9 37 0.00095 13.5 5.6 47 277-333 179-225 (336)
115 PRK10344 DNA-binding transcrip 27.8 37 0.00095 13.5 1.9 21 290-310 44-64 (90)
116 PRK08780 DNA topoisomerase III 27.0 39 0.00099 13.4 2.5 25 294-321 268-292 (783)
117 pfam06124 DUF960 Staphylococca 26.9 31 0.0008 14.0 1.2 23 136-159 8-30 (97)
118 TIGR02329 propionate_PrpR prop 26.7 39 0.001 13.4 3.2 52 256-314 604-656 (658)
119 TIGR01402 fliQ flagellar biosy 26.2 40 0.001 13.4 7.3 58 83-140 4-85 (88)
120 KOG0860 consensus 24.8 43 0.0011 13.2 3.0 33 11-43 81-113 (116)
121 pfam01080 Presenilin Presenili 24.6 43 0.0011 13.2 10.7 93 61-156 34-142 (403)
122 TIGR01183 ntrB nitrate ABC tra 24.5 43 0.0011 13.2 18.5 186 88-385 14-200 (203)
123 TIGR02846 spore_sigmaK RNA pol 24.3 43 0.0011 13.1 1.7 27 286-312 187-214 (228)
124 PRK10820 DNA-binding transcrip 23.6 45 0.0011 13.0 5.0 38 276-314 464-501 (513)
125 pfam03672 UPF0154 Uncharacteri 23.2 45 0.0012 13.0 1.5 15 192-206 5-19 (64)
126 PRK09347 folE GTP cyclohydrola 21.8 35 0.0009 13.7 0.7 14 125-138 32-45 (186)
127 PRK06319 DNA topoisomerase I/S 21.6 49 0.0013 12.8 2.4 25 294-321 275-299 (864)
128 KOG3484 consensus 21.5 16 0.00041 15.8 -1.1 16 311-326 19-34 (91)
129 smart00497 IENR1 Intron encode 21.4 50 0.0013 12.8 1.9 22 293-314 17-38 (53)
130 PRK12606 GTP cyclohydrolase I; 20.8 39 0.00099 13.4 0.8 15 125-139 29-43 (185)
131 TIGR01051 topA_bact DNA topois 20.6 52 0.0013 12.7 1.4 17 296-312 306-322 (688)
132 TIGR01057 topA_arch DNA topois 20.6 52 0.0013 12.7 1.5 19 294-312 286-304 (637)
133 TIGR00514 accC acetyl-CoA carb 20.3 28 0.00071 14.3 -0.1 14 57-70 78-91 (451)
No 1
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=890.61 Aligned_cols=388 Identities=48% Similarity=0.782 Sum_probs=383.7
Q ss_pred CHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 82331103320388999999999999999999999999999999728877812138899844375422356865269999
Q gi|254780171|r 10 TRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAI 89 (398)
Q Consensus 10 ~~~~~~~~~~~d~~~~~~~~Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~~~sy~~a~ 89 (398)
.++.++.+++||+|+|++++|.+.+.++.+.+||+.+|+.+||+++||.+|||||+++|||||+|++|+|+++|||+||+
T Consensus 10 ~~~~~~~s~~~dp~~r~i~~Q~l~v~~l~~~v~wiv~NtitNLqr~~IasGf~FL~~rAgFdI~qtlI~y~s~~TYgra~ 89 (397)
T COG4597 10 RSTSKGSSLIYDPTVRGIFFQLLAVVALAGIVYWIVGNTVTNLQRRGIASGFAFLDGRAGFDIGQTLIAYTSDSTYGRAF 89 (397)
T ss_pred HHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 32157987400816999999999999999999998633554788626421046660667878332401047888335788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCE
Q ss_conf 99999999999999999999999999996264246787799999999501469999999999873012103444103720
Q gi|254780171|r 90 LVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGM 169 (398)
Q Consensus 90 ~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~ 169 (398)
+||++||+.|++.||++||++|+++|++|||+||++|++|++|||+|||+|+|+||||||++|+..||++||+.+++++.
T Consensus 90 ~VGllNTl~Va~~gIi~atIiGfliGIaRLS~NWLi~kl~~vYvEiFRNiPpLL~IfFWYf~Vl~~LP~ar~s~~l~~~~ 169 (397)
T COG4597 90 IVGLLNTLLVAALGIITATIIGFLIGIARLSDNWLIRKLSTVYVEIFRNIPPLLQIFFWYFGVLSVLPGARQSVSLPDLI 169 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 99889899999999999999999987777231389999989999998268579999999999995288700011156301
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 35201000354535567004688778899999999999999864311223320455421010355899976544433221
Q gi|254780171|r 170 FLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249 (398)
Q Consensus 170 flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p 249 (398)
|+||||+|+|+|.|++|.|++..+++.+++.++++.+|++.+|..||++.|.++.....++++|.+.++.++.|+.+|+|
T Consensus 170 ~L~nrG~~~p~P~~geG~~~~~lA~~~~I~~s~~~~r~ak~rQ~~TGq~~~~~~~~~~LiiglPll~~~~~G~pl~~d~P 249 (397)
T COG4597 170 FLSNRGLYFPSPQWGEGFIAFILALVMAIVASVFLARWAKTRQIATGQQFRTWPTAAVLIIGLPLLAQWLFGAPLTFDVP 249 (397)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCEECCC
T ss_conf 35256401477310365179999999999999999999887787507857623568899845088999972897212052
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00131112682148789999999999977879999999998346367899989689989988898768999997410478
Q gi|254780171|r 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTS 329 (398)
Q Consensus 250 ~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~n 329 (398)
.+++||+.||..+.|||.|+.+||++||+||+|||||+||++|+|||+|||+|||+++.+++|+||.|||+|+++||++|
T Consensus 250 ~~~~FNl~GG~~v~PEf~aL~laLs~YTaaFIAEiVRaGI~~VskGQtEAa~sLGL~~~~t~RlVivPQAlRiIIPPLTS 329 (397)
T COG4597 250 ALGGFNLTGGMVVIPEFAALFLALSFYTAAFIAEIVRAGIQAVSKGQTEAARSLGLRSSLTLRLVIVPQALRIIIPPLTS 329 (397)
T ss_pred CCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEECCCCCH
T ss_conf 11443566870565789999999999999999999987650257661778986289975447999841101564176218
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999975499999999999999999983137758999999999999999999999999678743047
Q gi|254780171|r 330 QYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEK 397 (398)
Q Consensus 330 q~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er 397 (398)
||+|++||||||.+|||||++.+++|+.|||||++|+..+.|.+||.+|+.+|.+|||||||++++||
T Consensus 330 QYLNLtKNSSLAiAIGYpDlv~vagT~lNQTGQAvEvv~i~m~vYL~lSL~tSl~MN~~N~rmalvER 397 (397)
T COG4597 330 QYLNLTKNSSLAIAIGYPDLVAVAGTVLNQTGQAVEVVAIWMLVYLSLSLTTSLLMNWYNRRMALVER 397 (397)
T ss_pred HHHHHCCCCHHHHCCCCCCEEEEECEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88733235423200277766887330224556078999999999999999999999998765432049
No 2
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=443.07 Aligned_cols=210 Identities=39% Similarity=0.674 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 52699999999999999999999999999999999626424678779999999950146999999999987301210344
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHS 162 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~ 162 (398)
..+...++.|+.+|+.++++++++++++|+++|++|.|+++++|.+++.|||++||||+|+|+|+|||+.+-.+
T Consensus 12 ~~~~~~ll~G~~~Tl~ls~~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~yfg~lp~~------ 85 (222)
T COG0765 12 LDYLPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLPLL------ 85 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
T ss_conf 65589999999999999999999999999999999977847899999998877617419999999999857984------
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 41037203520100035453556700468877889999999999999986431122332045542101035589997654
Q gi|254780171|r 163 IVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKY 242 (398)
Q Consensus 163 ~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~ 242 (398)
T Consensus 86 -------------------------------------------------------------------------------- 85 (222)
T COG0765 86 -------------------------------------------------------------------------------- 85 (222)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 44332210013111268214878999999999997787999999999834636789998968998998889876899999
Q gi|254780171|r 243 QLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRS 322 (398)
Q Consensus 243 ~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~ 322 (398)
|..++ ++.|+++|+++|+|||+|||+||||+||||||+|||+|||||++|+||+||+|||+|+
T Consensus 86 ----------------gi~~~-~~~aavial~l~~~AY~aEi~R~GI~sV~kGQ~EAA~aLGls~~q~~r~IIlPQAlr~ 148 (222)
T COG0765 86 ----------------GIELD-PFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRV 148 (222)
T ss_pred ----------------CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHEEHHHHHHH
T ss_conf ----------------46777-9999999999999999999999999618886899999859998668663002356998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7410478999999754999999999999999999831377589999999999999999999999996787430
Q gi|254780171|r 323 IIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 323 ~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
++||++||+++++||||++++||++|+++.+|++.++|++++|+|.+++++|+++|+++|.+.+|+|||++..
T Consensus 149 ~lP~l~n~~i~liK~TSl~svIgv~EL~~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~ls~~~~~lErr~~~~ 221 (222)
T COG0765 149 ILPPLGNQFISLIKDTSLVSVIGVVELTRAAQIIAARTFRPFEVYLLAALIYLILCLPLSLLSRRLERRLARY 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6517689999999982999999899999999999986651799999999999999999999999999885237
No 3
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=100.00 E-value=0 Score=432.88 Aligned_cols=234 Identities=25% Similarity=0.373 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 69999999999999999999999999999999962642467877999999995014699999999998730121034441
Q gi|254780171|r 85 YATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIV 164 (398)
Q Consensus 85 y~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~ 164 (398)
++..++.|+..|+.++++++++++++|++++++|.|+++++|..+++|||++||||+|+|+||+||++...++...+.+.
T Consensus 3 ~f~~Ll~G~~~Tl~l~~~a~~~g~~lG~~la~~r~s~~~~l~~~~~~yv~~~RgtP~lv~l~~~yfg~p~l~~~l~~~~~ 82 (238)
T PRK11123 3 EFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLLLTLSDGFT 82 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 47999999999999999999999999999999998886889999999999991675999999999952898876310000
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 03720352010003545355670046887788999999999999998643112233204554210103558999765444
Q gi|254780171|r 165 LPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQL 244 (398)
Q Consensus 165 ~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 244 (398)
..+.... .
T Consensus 83 ~~~~~~~------------------------------------------------------------------------~ 90 (238)
T PRK11123 83 LNLGFVQ------------------------------------------------------------------------I 90 (238)
T ss_pred CCCHHHH------------------------------------------------------------------------H
T ss_conf 0100111------------------------------------------------------------------------0
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 33221001311126821487899999999999778799999999983463678999896899899888987689999974
Q gi|254780171|r 245 HFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSII 324 (398)
Q Consensus 245 ~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~i 324 (398)
....| ..|..++ +|.++++++++|++||+||++|||++||||||+|||+|+|||++|++|+||+|||+|+++
T Consensus 91 ~~~~~-------~~~~~~~-~f~~avial~l~~~Ay~aEi~R~gi~sVp~GQ~EAa~alGms~~q~~r~IilPQa~r~~l 162 (238)
T PRK11123 91 PVQMD-------IENFEVS-PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHAL 162 (238)
T ss_pred HHHCC-------CCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 10012-------1345646-999999999999999999999999983999999999984989999999999899999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10478999999754999999999999999999831377589999999999999999999999996787430479
Q gi|254780171|r 325 PPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 (398)
Q Consensus 325 P~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er~ 398 (398)
||++||+++++|||||+++||+.|++++++.+.++|++++|.|.+++++|+++|+++|.+++++|||..-.|||
T Consensus 163 P~l~n~~i~liK~TSL~s~Igv~El~~~a~~i~~~t~~~~e~y~~~a~iYlii~~~l~~~~~~lEkR~~r~~rr 236 (238)
T PRK11123 163 PGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIDLRFTRFERR 236 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 38999999999984999999899999999999971345699999999999999999999999999985422578
No 4
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed
Probab=100.00 E-value=0 Score=430.57 Aligned_cols=211 Identities=28% Similarity=0.520 Sum_probs=199.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 52699999999999999999999999999999999626424678779999999950146999999999987301210344
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHS 162 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~ 162 (398)
-+|+..++.|+.+|+.+++.++++++++|+++|++|.|+|+++|++++.|||++||||+|+|+||+||++...++
T Consensus 9 ~~~~p~ll~Gl~~Tl~l~~~s~~~g~~lG~~~a~~r~~~~~~l~~~~~~yv~~~RgtPlLv~lf~~yfglp~l~~----- 83 (219)
T PRK09494 9 WPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFN----- 83 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-----
T ss_conf 998999999999999999999999999999999999889689999999999999764899999999998998546-----
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 41037203520100035453556700468877889999999999999986431122332045542101035589997654
Q gi|254780171|r 163 IVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKY 242 (398)
Q Consensus 163 ~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~ 242 (398)
T Consensus 84 -------------------------------------------------------------------------------- 83 (219)
T PRK09494 84 -------------------------------------------------------------------------------- 83 (219)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 44332210013111268214878999999999997787999999999834636789998968998998889876899999
Q gi|254780171|r 243 QLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRS 322 (398)
Q Consensus 243 ~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~ 322 (398)
|..+ ++|.++++++++|++||+||++|||++||||||+|||+|+|||++|++|+||+|||+|+
T Consensus 84 ----------------~i~~-~~~~~~vi~l~l~~~Ay~aEi~R~gi~sVp~GQ~EAA~alG~s~~q~~r~IilPQa~r~ 146 (219)
T PRK09494 84 ----------------DLRI-DPFSAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRR 146 (219)
T ss_pred ----------------CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf ----------------7774-89999999999999999999999999983187999998859898889896469987999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7410478999999754999999999999999999831377589999999999999999999999996787430
Q gi|254780171|r 323 IIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 323 ~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
++||++||+++++|||||+++||++|++++++.+.++|++++|+|..++++|+++|+++|.+++++|||++++
T Consensus 147 ~lP~l~n~~i~liK~Tsl~s~Igv~El~~~a~~i~~~t~~~~e~~~~~a~iY~~l~~~l~~~~~~lErrl~i~ 219 (219)
T PRK09494 147 MLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMKIL 219 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8878899999999987999999899999999999971071899999999999999999999999999877149
No 5
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional
Probab=100.00 E-value=0 Score=413.83 Aligned_cols=219 Identities=21% Similarity=0.407 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 26999999999999999999999999999999996264246787799999999501469999999999873012103444
Q gi|254780171|r 84 SYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSI 163 (398)
Q Consensus 84 sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~ 163 (398)
.|+..++.|+..|+.+++.++++++++|++++++|.|+|+++|++++.|||++||||+|+|+|++||+... +|...
T Consensus 3 e~~P~ll~G~~~Tl~l~~~s~~~~~~lG~~la~~r~~~~~~l~~~~~~yv~~~Rg~PlLv~lf~~yfg~~~-~~~l~--- 78 (222)
T PRK11122 3 EYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQ-FPWLQ--- 78 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHH---
T ss_conf 46999999999999999999999999999999999879778999999999999564699999999981488-87775---
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 10372035201000354535567004688778899999999999999864311223320455421010355899976544
Q gi|254780171|r 164 VLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQ 243 (398)
Q Consensus 164 ~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~ 243 (398)
T Consensus 79 -------------------------------------------------------------------------------- 78 (222)
T PRK11122 79 -------------------------------------------------------------------------------- 78 (222)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 43322100131112682148789999999999977879999999998346367899989689989988898768999997
Q gi|254780171|r 244 LHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSI 323 (398)
Q Consensus 244 ~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~ 323 (398)
+.|... + ..+++|.+++++|++|++||+||++|||++||||||+|||+|+|||++|++| ||+|||+|.+
T Consensus 79 ---~~~~~~------~-~~~~~~~~~viaL~l~~~Ay~aEi~R~gi~sV~~GQ~EAA~slGls~~q~~r-IilPQa~r~~ 147 (222)
T PRK11122 79 ---EYPWLW------H-LLSQPWLCAMLALALNSAAYSTQLFYGAIRAIPEGQWQSCSALGMSKKQTLA-ILLPYAFKRA 147 (222)
T ss_pred ---CCCHHH------H-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHH-HHHHHHHHHH
T ss_conf ---030353------2-0225999999999999999999999999960998799999986989999999-8999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 410478999999754999999999999999999831377589999999999999999999999996787430479
Q gi|254780171|r 324 IPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 (398)
Q Consensus 324 iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er~ 398 (398)
+||++||+++++|||||+++||++|+++++|.+.++|++.. +|.+++++|+++|+++|.+++++|||+.-.|||
T Consensus 148 lP~l~n~~i~liK~TsL~s~Igv~El~~~a~~i~~~t~~~~-~y~~~a~~Y~~i~~~~~~~~~~lErR~~~~~rr 221 (222)
T PRK11122 148 LSSYSNEVVLVFKGTSLAYTITLMDVMGYSQLLYGRTYDVM-VFGAAGIIYLVVNGLLTLLMRLIERKALAFERR 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 66889999999998499999989999999999997416099-999999999999999999999999987655335
No 6
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons..
Probab=100.00 E-value=0 Score=386.87 Aligned_cols=205 Identities=34% Similarity=0.513 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 26999999999999999999999999999999996264246787799999999501469999999999873012103444
Q gi|254780171|r 84 SYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSI 163 (398)
Q Consensus 84 sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~ 163 (398)
+-...++.|+.||++++..|-+.|.++|.+.++.|.|...++++....-|||.|+||||+|++|.||++++-
T Consensus 14 qilP~l~~gl~~Ti~atalGfaiA~VlGLvfAilRrsa~~~Iswp~~~vvEFiR~TPLLvQlyFlyYVLP~~-------- 85 (218)
T TIGR03003 14 QILPELLEGLKVTIKATALGFAIALVLGLVFAILRRSARKLISWPTAVVVEFIRDTPLLVQLYFLYYVLPDY-------- 85 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHEEEEEEECCCCHHHHHHHHHHHHHCC--------
T ss_conf 999999999999999999999999999999988752156310100100465205680899999999883023--------
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 10372035201000354535567004688778899999999999999864311223320455421010355899976544
Q gi|254780171|r 164 VLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQ 243 (398)
Q Consensus 164 ~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~ 243 (398)
T Consensus 86 -------------------------------------------------------------------------------- 85 (218)
T TIGR03003 86 -------------------------------------------------------------------------------- 85 (218)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 43322100131112682148789999999999977879999999998346367899989689989988898768999997
Q gi|254780171|r 244 LHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSI 323 (398)
Q Consensus 244 ~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~ 323 (398)
|+.+ |+|.++++|+++++|+|.||+.|||+++|||||||||+|+.||+.|++|+||+|||+|.+
T Consensus 86 ---------------Gi~L-pA~~~GvlglGlhYa~Y~aEVYR~G~eaVprGQWEAa~AlNlt~~~tyr~iIlPQAippi 149 (218)
T TIGR03003 86 ---------------GISL-PALLVGVLGLGLHYAAYAAEVYRAGLEAVPRGQWEAATALNLTARQTYRDIILPQAIPPI 149 (218)
T ss_pred ---------------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHH
T ss_conf ---------------3313-799998999888899888888863102588761689998523354457651022210011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 410478999999754999999999999999999831377589999999999999999999999996787
Q gi|254780171|r 324 IPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 324 iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
+||++|-.+.++|||.+.|+|++.|+|++||.+.|+|||++|+++++++++|++|++.|.+++|+|+|+
T Consensus 150 ~Pa~gNYLvAM~KeTPvLSaiTVlE~M~~Ak~Ig~~tfrYleP~TlVGvfFL~lsii~~~~lrrlearl 218 (218)
T TIGR03003 150 VPALGNYLVAMLKETPVLSAITVLELMNQAKSIGEETFRYLEPLTLVGVFFLLLSIILAFLLRRLEARL 218 (218)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 004578999997327446889999999988888624651044078999999999999999999998619
No 7
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=363.73 Aligned_cols=222 Identities=30% Similarity=0.498 Sum_probs=204.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 52699999999999999999999999999999999626424678779999999950146999999999987301210344
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHS 162 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~ 162 (398)
.-|+..++.|+..|+...+.+++.+.++-+.++++|.|+||+++..+..|+-+||+||||+|+|..|+++- ++|..+|+
T Consensus 7 ~~~~p~~l~Gl~~TL~Ll~~S~~iG~~LAvpla~~r~s~~~~v~~~a~~y~~~fRGTPLLvQlfLiYyGlg-qf~~ir~s 85 (228)
T COG4160 7 LEYLPRLLSGLATTLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQLFLIYYGLG-QFEWIRES 85 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHEEEEEECCCHHHHHHHHHHHCCC-CCHHHHHH
T ss_conf 99879997319999999999999999999999999972885001112501456538749999999994643-14688840
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 41037203520100035453556700468877889999999999999986431122332045542101035589997654
Q gi|254780171|r 163 IVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKY 242 (398)
Q Consensus 163 ~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~ 242 (398)
..+ |
T Consensus 86 ~~l----------------------W------------------------------------------------------ 89 (228)
T COG4160 86 IFL----------------------W------------------------------------------------------ 89 (228)
T ss_pred HHH----------------------H------------------------------------------------------
T ss_conf 665----------------------8------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 44332210013111268214878999999999997787999999999834636789998968998998889876899999
Q gi|254780171|r 243 QLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRS 322 (398)
Q Consensus 243 ~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~ 322 (398)
|. ++.+|.|++++|++|||||.+||+||+|+|||+||+|||+|+|||++|++|+|++|||+|+
T Consensus 90 ------~~-----------lr~~w~Ca~lAltLNtaAY~~Ei~rGAi~avP~Gq~Eaa~AlGmsr~~~~r~IiLP~Alr~ 152 (228)
T COG4160 90 ------PF-----------LREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSRFKTLRRIILPSALRR 152 (228)
T ss_pred ------HH-----------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf ------99-----------8252889999999977999999998898528941789999819629999999997799998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7410478999999754999999999999999999831377589999999999999999999999996787430479
Q gi|254780171|r 323 IIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 (398)
Q Consensus 323 ~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er~ 398 (398)
++|+.+||.|-++|.||||+.|+++|+++.++++.++|++++|+|.+++++|++++.++...+++.|||.--.||+
T Consensus 153 ALp~YsNEvILmlK~Tala~tiTv~Dl~g~ar~i~~~Ty~~~~~f~~ag~iYl~it~il~~~~r~~E~r~~~~~~~ 228 (228)
T COG4160 153 ALPAYSNEVILMLKSTALASTITVMDLMGYARLINSRTYDPYEVFGIAGAIYLIITGILTLLFRLIERRWLAHLRR 228 (228)
T ss_pred HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4624588379998344154341399999999999997768999999999999999999999999999987631269
No 8
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this entry are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain other genes of the ABC transporter and are typically found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologues..
Probab=100.00 E-value=0 Score=342.21 Aligned_cols=208 Identities=31% Similarity=0.506 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 26999999999999999999999999999999996264246787799999999501469999999999873012103444
Q gi|254780171|r 84 SYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSI 163 (398)
Q Consensus 84 sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~ 163 (398)
.|..-++.|-.-|+.+++.|.++|+++-++.|++|+|+-+.+|.+|..|+|+||+|-+|||||..||+++ +||.
T Consensus 2 ~ylpl~lQGAwVT~~iTl~gs~la~V~Af~aglgr~s~~~~lr~~a~~YiE~FRGTSllVQLFW~yfvLP--lPP~---- 75 (216)
T TIGR03004 2 AYLPLLLQGAWVTLQITLAGSVLAVVVAFLAGLGRLSRFRILRALAVVYIEVFRGTSLLVQLFWLYFVLP--LPPI---- 75 (216)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC----
T ss_conf 3035799889999999999999999999999887523535887777787544203789999999999725--7999----
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 10372035201000354535567004688778899999999999999864311223320455421010355899976544
Q gi|254780171|r 164 VLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQ 243 (398)
Q Consensus 164 ~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~ 243 (398)
T Consensus 76 -------------------------------------------------------------------------------- 75 (216)
T TIGR03004 76 -------------------------------------------------------------------------------- 75 (216)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 43322100131112682148789999999999977879999999998346367899989689989988898768999997
Q gi|254780171|r 244 LHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSI 323 (398)
Q Consensus 244 ~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~ 323 (398)
|++++| ..+++++|++|-|||-|||+||+++||.|+|.|||+||.++|.|+||||++|||+-.+
T Consensus 76 ---------------gl~l~P-~t~gv~~Lglh~GaYGAEivRGA~~sv~~~Q~EAc~ALNftrfq~~rrI~LPQAl~~m 139 (216)
T TIGR03004 76 ---------------GLELDP-LTVGVLALGLHVGAYGAEIVRGAVKSVSKEQLEACIALNFTRFQALRRIVLPQALVEM 139 (216)
T ss_pred ---------------CCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf ---------------840251-8999999997326501688888899743658999998415367799876326799974
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4104789999997549999999999999999998313775899999999999999999999999967874
Q gi|254780171|r 324 IPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 324 iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
+|+-+|..|-++|+||++|.|+..||+..||.+.++|+.++.+|.++.+.|+++++.++..|+|+|||++
T Consensus 140 mp~fgNlaIElLK~tslVSLIslaDltF~Aq~~r~~T~~tl~~fa~~LL~YFvMa~~i~l~~R~lEr~v~ 209 (216)
T TIGR03004 140 MPAFGNLAIELLKLTSLVSLISLADLTFRAQSVRALTLDTLKVFALILLLYFVMALIISLAMRVLERRVA 209 (216)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3866158999998789999999986769999999841002799999999999999999999998866640
No 9
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=328.94 Aligned_cols=226 Identities=28% Similarity=0.460 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 65269999999999999999999999999999999962642467877999999995014699999999998730121034
Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDH 161 (398)
Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~ 161 (398)
.+.|++.++.|.+-|+.+++++.+++.++|.+.+.+++|+|+++|..+..|+.++|.+|=|+.+++.||+-...+-...+
T Consensus 3 ~~G~~~~l~~ga~~Tl~lAv~sl~lgl~lGl~~A~~kls~~r~lr~~~~~YtTv~RGvPELl~illiyfG~~~lL~~~~~ 82 (230)
T COG4215 3 LAGWGDELLQGALVTLELAVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLILLIYFGGQILLNTLAD 82 (230)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77607999999999999999999999999999999986666067897543535542671999999999830999999998
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 44103720352010003545355670046887788999999999999998643112233204554210103558999765
Q gi|254780171|r 162 SIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALK 241 (398)
Q Consensus 162 ~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~ 241 (398)
+
T Consensus 83 ----------------------------------------------------------------------------~--- 83 (230)
T COG4215 83 ----------------------------------------------------------------------------V--- 83 (230)
T ss_pred ----------------------------------------------------------------------------H---
T ss_conf ----------------------------------------------------------------------------7---
Q ss_pred HHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44433221001311126-82148789999999999977879999999998346367899989689989988898768999
Q gi|254780171|r 242 YQLHFDKPVLGQFNFIG-GSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAM 320 (398)
Q Consensus 242 ~~~~~~~p~l~~f~~~g-G~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAl 320 (398)
+...| +....|+|+|++++|++-.+||.+|++||++++|||||+|||+|+||||+|+||+|++||++
T Consensus 84 ------------~~~~g~~~idi~~FvaGviaL~~i~gAYatEt~RGA~~AVp~GQ~EAa~AlGms~~~~frrI~lPqm~ 151 (230)
T COG4215 84 ------------TGALGVGFIDISPFVAGVIALGLIFGAYATETLRGAFKAVPKGQIEAARALGLSRSQTFRRIVLPQMW 151 (230)
T ss_pred ------------HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf ------------30147774556749999999999999998999999997289651889998099876889999988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 99741047899999975499999999999999999983137758999999999999999999999999678743-0479
Q gi|254780171|r 321 RSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIAL-KEKK 398 (398)
Q Consensus 321 R~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l-~er~ 398 (398)
|.++|+++|+|+.++|||+|+++||+.|++.+++...+.|.+++..|.+++++||+++++.+....++|||... .||+
T Consensus 152 R~ALPGlgN~WlvllKDTALVSvIGl~dl~~~a~~aa~~Tk~pFtfy~~aa~iYL~~t~vS~~~l~~lErr~~rg~~r~ 230 (230)
T COG4215 152 RHALPGLGNLWLVLLKDTALVSLIGLNDLMRQTQLAAGSTKEPFTFYIVAALIYLVITLVSNVVLLFLERRASRGFERR 230 (230)
T ss_pred HHHCCCCCCHHHHHHHCCHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9827885302677763003542115999999999873455554399999999999999999999999999854242579
No 10
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=271.53 Aligned_cols=207 Identities=23% Similarity=0.342 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52699999999999999999999999999999999-------62642467877999999995014699999999998730
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAG-------RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSV 155 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~-------RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~ 155 (398)
|.-.+-++.|+.+|+..++.+.++|.++|+.+|+. |+++|+.++++++.|+|++|++|.++++++.+......
T Consensus 3 ~~~~~lll~g~~~Tl~mt~~s~~~~~iiglplGi~l~~~~~~~~~~~~~l~~~~~~~i~~~R~iP~lv~l~~~~~~~~~~ 82 (217)
T PRK10782 3 EAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSAVVNIFRSIPFIILLVWMIPFTRVI 82 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999999999999999999999997320224434689999999999995068999999999999998
Q ss_pred CCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHH
Q ss_conf 12103444103720352010003545355670046887788999999999999998643112233204554210103558
Q gi|254780171|r 156 LPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTL 235 (398)
Q Consensus 156 lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l 235 (398)
.
T Consensus 83 ~------------------------------------------------------------------------------- 83 (217)
T PRK10782 83 V------------------------------------------------------------------------------- 83 (217)
T ss_pred H-------------------------------------------------------------------------------
T ss_conf 4-------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99976544433221001311126821487899999999999778799999999983463678999896899899888987
Q gi|254780171|r 236 VLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVL 315 (398)
Q Consensus 236 ~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VI 315 (398)
|... .+.|+++++++++++|++|++|+|+++|||||+|||+|+|+|++|++|+|+
T Consensus 84 -----------------------g~~~--g~~aaiiaL~i~~~~~iar~~~~~i~~V~~g~~EAa~alG~s~~q~i~~vi 138 (217)
T PRK10782 84 -----------------------GTSI--GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVL 138 (217)
T ss_pred -----------------------CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf -----------------------4662--168999999999989999999999983998799999983989889948510
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899999741047899999975499999999999999999983137758999999999999999999999999678743
Q gi|254780171|r 316 LPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIAL 394 (398)
Q Consensus 316 lPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l 394 (398)
+|||++.++|++.|+++.++|+||+++.||..|+...+.+...++++..+.+.++ +.+.++...+..+.|+++||+.-
T Consensus 139 LPqAlp~ii~~~~~~~i~~i~~tsl~g~IG~ggLG~~a~~~~~~~~~~~~~~~v~-~l~~ilv~~i~~~~~~l~k~~~~ 216 (217)
T PRK10782 139 LPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVL-VLLVILVYLIQFAGDRIVRAVTH 216 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7921999999999999999999999999810478999999999851510999999-99999999999999999998637
No 11
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.95 E-value=7.3e-27 Score=182.43 Aligned_cols=98 Identities=34% Similarity=0.619 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
Q ss_conf 99999999999999999999999999999999626424678779999999950146999999999987301210344410
Q gi|254780171|r 86 ATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVL 165 (398)
Q Consensus 86 ~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~ 165 (398)
...+..|+..|+.+++.|+++++++|+++|++|+|+|+++++.+++|||++||||+|+|+||.||+++..
T Consensus 2 ~p~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~yfgLP~~---------- 71 (99)
T TIGR01726 2 LPFLLKGLLLTLLISVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLI---------- 71 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_conf 1789999999999999999999999999999987135999999999999996207999999999843542----------
Q ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 37203520100035453556700468877889999999999999986431122332045542101035589997654443
Q gi|254780171|r 166 PFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLH 245 (398)
Q Consensus 166 ~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 245 (398)
T Consensus 72 -------------------------------------------------------------------------------- 71 (99)
T TIGR01726 72 -------------------------------------------------------------------------------- 71 (99)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 322100131112682148789999999999977879999999
Q gi|254780171|r 246 FDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRS 287 (398)
Q Consensus 246 ~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~ 287 (398)
|++++ ++.|+++||++|+|||+|||+||
T Consensus 72 -------------Gi~l~-~~~Aa~~al~l~~~AY~aEi~R~ 99 (99)
T TIGR01726 72 -------------GIRLS-PLTAAVIALTLFEGAYLAEIFRG 99 (99)
T ss_pred -------------CCCCC-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -------------77067-78999999999879999876539
No 12
>PRK11275 pstC phosphate transporter permease subunit; Provisional
Probab=99.73 E-value=4.4e-13 Score=98.44 Aligned_cols=290 Identities=15% Similarity=0.208 Sum_probs=180.1
Q ss_pred HHHHCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCC-CCHHHH
Q ss_conf 233110332038899999999--99999999999999999999997288778121388998443754223568-652699
Q gi|254780171|r 11 RYFSRMKFLYDMRVHNISVQI--ILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTS-DSSYAT 87 (398)
Q Consensus 11 ~~~~~~~~~~d~~~~~~~~Q~--~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~-~~sy~~ 87 (398)
+.|+.+.-.-|.-++.+..-. +.++.+...++++..+..--+++.| ++|+..+. ++| .+.|+-
T Consensus 6 p~~~~~~R~~D~if~~l~~~~a~~~~~~l~~I~~~l~~~~~p~~~~~g----~~Fl~~~~----------W~p~~~~~Gi 71 (319)
T PRK11275 6 PAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFG----LSFLWTKE----------WDPPNDIYGA 71 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHCCCC----------CCCCCCCCCC
T ss_conf 665679957869999999999999999999999999998899999718----37516999----------8998687782
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
Q ss_conf 999999999999999999999999999999--626424678779999999950146999999999987301210344410
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAG--RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVL 165 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~--RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~ 165 (398)
.- =+.+|+.++.+++++|.-+|+..++. ...++| +++.-+..+|+.=.+|-.+-=+| ++.-..|..++....
T Consensus 72 ~~--~i~GTl~~s~iAllia~Plgi~~Aiyl~eya~~~-~~~~l~~~ielLagIPSVV~Gl~---Gl~v~~p~~~~~~~~ 145 (319)
T PRK11275 72 LV--PIYGTLVTSFIALLIAVPVSFGIALFLTELAPGW-LKRPLGIAIELLAAIPSIVYGMW---GLFVFAPLFATYFQE 145 (319)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 99--9999999999999999999999999999976685-89899999999821758999999---999999999987545
Q ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 37203520100035453556700468877889999999999999986431122332045542101035589997654443
Q gi|254780171|r 166 PFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLH 245 (398)
Q Consensus 166 ~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 245 (398)
...+ ..
T Consensus 146 ---------------------------------------------~~~~---~~-------------------------- 151 (319)
T PRK11275 146 ---------------------------------------------PVGN---IL-------------------------- 151 (319)
T ss_pred ---------------------------------------------HHHH---HC--------------------------
T ss_conf ---------------------------------------------5654---41--------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 32210013111268214878999999999997787999999999834636789998968998998889876899999741
Q gi|254780171|r 246 FDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIP 325 (398)
Q Consensus 246 ~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP 325 (398)
-..|... ..+ .|-.......++-+.|++-.--+++-+-|-++++||+.++|||.|||.||||+.++|++|.|.+-++-
T Consensus 152 ~~~~~~~-~~~-~~~~~G~s~l~a~i~LaiMilP~i~s~s~eal~~VP~~~reaa~ALGatrw~ti~~VvlP~a~~GI~~ 229 (319)
T PRK11275 152 SNIPIVG-ALF-SGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIG 229 (319)
T ss_pred CCHHHHH-HHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 2104677-761-47764402899999999999999999999999968899999999839979999999999988868999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHH------HHHHH----HHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0478999999754-999999999------99999----9999831377-----589999999999999999999999996
Q gi|254780171|r 326 PLTSQYLNLLKNS-SLAVAVGFA------DLVSV----GGTIINQTGQ-----AIEIILIWMFIYLSLSIMIALFMNRLN 389 (398)
Q Consensus 326 ~l~nq~i~l~K~S-SLa~~Ig~~------dl~~~----~~~~~~~t~~-----~~e~~~i~~~~Yl~isl~iS~~~n~~~ 389 (398)
...=-+=--+-+| .+..++|-. +++.- +..+.||-+. .......++++-+++++.+..+-+++-
T Consensus 230 gviLg~gRAlGETmaV~mv~Gn~~~~~~~~lf~p~~Tlts~Ia~~~~ea~~g~~~~al~a~glvLfvit~i~N~~a~~iv 309 (319)
T PRK11275 230 GVMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMI 309 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998899999992787668987645655089999999631357748999999999999999999999999999
Q ss_pred HHHHHHC
Q ss_conf 7874304
Q gi|254780171|r 390 AKIALKE 396 (398)
Q Consensus 390 rr~~l~e 396 (398)
||.+-+|
T Consensus 310 ~R~~k~~ 316 (319)
T PRK11275 310 MRLAKNE 316 (319)
T ss_pred HHHHHHC
T ss_conf 9987523
No 13
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=99.71 E-value=2.9e-15 Score=111.76 Aligned_cols=154 Identities=23% Similarity=0.288 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEE
Q ss_conf 99999999999999999999999996264246787799999999501469999999999873012103444103720352
Q gi|254780171|r 93 FVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLN 172 (398)
Q Consensus 93 l~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~fls 172 (398)
+.||+.+++++.++++++|+.+|...-.++.-.++..+..+++.+.+|..+..+.|+.......+.
T Consensus 1 l~nSl~i~~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~i~~~iP~~v~~~~~~~~~~~~~~~-------------- 66 (190)
T cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW-------------- 66 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC--------------
T ss_conf 987999999999999999999999999518508899999999999803999999999999841232--------------
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 01000354535567004688778899999999999999864311223320455421010355899976544433221001
Q gi|254780171|r 173 NRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLG 252 (398)
Q Consensus 173 nRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~ 252 (398)
.
T Consensus 67 ------------~------------------------------------------------------------------- 67 (190)
T cd06261 67 ------------G------------------------------------------------------------------- 67 (190)
T ss_pred ------------C-------------------------------------------------------------------
T ss_conf ------------2-------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31112682148789999999999977879999999998346367899989689989988898768999997410478999
Q gi|254780171|r 253 QFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYL 332 (398)
Q Consensus 253 ~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i 332 (398)
.........++...+....|.....+++++++|+.+.|||+++|.+++|++|+|++||+.+.++......+.
T Consensus 68 --------~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~p~i~~~~~l~~~ 139 (190)
T cd06261 68 --------ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFA 139 (190)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------147899999999999999999999999998389999999998699734656998799639999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999754999999999
Q gi|254780171|r 333 NLLKNSSLAVAVGFA 347 (398)
Q Consensus 333 ~l~K~SSLa~~Ig~~ 347 (398)
..+|+.+....+|-.
T Consensus 140 ~~~~~~~~~~~l~~~ 154 (190)
T cd06261 140 RALGEFALVSFLGGG 154 (190)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999689
No 14
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional
Probab=99.65 E-value=7.6e-13 Score=96.99 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 99999999999999999999999999999626424678779999999950146999999999987301210344410372
Q gi|254780171|r 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFG 168 (398)
Q Consensus 89 ~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~ 168 (398)
++..+.||+.+++.+.++++++|+.++..=-..+.--|++-..-+-+==-+|..+-=+.|... +
T Consensus 62 ~~~al~~Tl~~a~~~~~i~lvlG~~lA~~l~r~~f~gr~~~~~l~~lP~~ip~vV~g~~~~~l----~------------ 125 (291)
T PRK11602 62 MLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLF----Y------------ 125 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----C------------
T ss_conf 999999999999999999999999999999927886089999999998863799999999998----2------------
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 03520100035453556700468877889999999999999986431122332045542101035589997654443322
Q gi|254780171|r 169 MFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDK 248 (398)
Q Consensus 169 ~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 248 (398)
+..|.. ..++.
T Consensus 126 ---~~~G~l----------------------------------------------------------~~~L~-------- 136 (291)
T PRK11602 126 ---GSNGPL----------------------------------------------------------GGWLD-------- 136 (291)
T ss_pred ---CCCCHH----------------------------------------------------------HHHHH--------
T ss_conf ---644378----------------------------------------------------------99998--------
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10013111268214878999999999997787999999999834636789998968998998889876899999741047
Q gi|254780171|r 249 PVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLT 328 (398)
Q Consensus 249 p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~ 328 (398)
. .|..+.-.+.+.+++....+..|+.-.++++++++|+.+.|||+.+|-|+||++++|++|+....++-...
T Consensus 137 ----~----~~~~~~~s~~giil~~v~~~~Pf~~~~~~a~l~~i~~~l~EAA~~lGAs~wq~F~~VtLPll~P~i~~g~i 208 (291)
T PRK11602 137 ----E----HNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVV 208 (291)
T ss_pred ----H----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----5----58328677899999999999999999999999868958999998769998789898649830999999999
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999997549999999-----99999999999831377589999999999999999999999996787430479
Q gi|254780171|r 329 SQYLNLLKNSSLAVAVG-----FADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 (398)
Q Consensus 329 nq~i~l~K~SSLa~~Ig-----~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er~ 398 (398)
=.++.-+++=...+.++ -.+-+...-....++++.......+++ -..+++.+-.+++++|+|.+-+|+|
T Consensus 209 L~f~~al~~Fg~v~~l~G~~~g~T~t~~~~i~~~~~~~~~~~a~~~a~~-l~~~~~i~l~l~~~lq~R~~r~~~r 282 (291)
T PRK11602 209 LTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAAL-LTLMAIITLFLKSMLQWRLENQEKR 282 (291)
T ss_pred HHHHHHHHHCCCHHEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998756804311579988501069999999981264469999999-9999999999999999999707888
No 15
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.65 E-value=2.9e-12 Score=93.47 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999977879999999998346367899989689989988898768999997410478999999754999999
Q gi|254780171|r 265 EFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAV 344 (398)
Q Consensus 265 ~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~I 344 (398)
.+.+.+++....+-.|..-.++++++++|+.+.|||+.+|-++||++|+|++|+....++-...-.++.-++|=.....+
T Consensus 139 ~~~giii~~~~~~~Pf~~~~~~a~l~~id~~leEAA~~lGAs~~~~f~~V~lPll~P~i~~g~ll~F~~s~~~f~~~~~l 218 (277)
T PRK10971 139 TWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFI 218 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 29999999999998999998789998489999999986499865730410398579999999999999999876067500
Q ss_pred HH-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99-----999999999983137758999999999999999999999999678743047
Q gi|254780171|r 345 GF-----ADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEK 397 (398)
Q Consensus 345 g~-----~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er 397 (398)
|= .+.....--..-+++.. +.-..++.+-+++|+.+-..+++++||.+-++.
T Consensus 219 ~G~~~~~t~tl~~~iy~~~~~~d~-~~a~Als~ill~~sli~~~~~~~l~~R~~Rr~~ 275 (277)
T PRK10971 219 AGNIAWKTEVTSLMIFVRLQEFDY-PAASAIASVILAASLLLLFSINTLQSRFGRRVV 275 (277)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 179988651499999999987688-999999999999999999999999999987537
No 16
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.7e-13 Score=101.00 Aligned_cols=208 Identities=25% Similarity=0.393 Sum_probs=163.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8652699999999999999999999999999999999-------626424678779999999950146999999999987
Q gi|254780171|r 81 SDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAG-------RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVL 153 (398)
Q Consensus 81 ~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~-------RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~ 153 (398)
.++..++-++.+..+|+.....+-+++.++|+.+|+. .+.+|+.+.++-..-|.++|.+|-.+.+...
T Consensus 6 ~~~~~~~~l~~a~~eTlyMv~~s~~~~~~iGlplGvlL~~T~~g~i~~n~~~~~il~~ivNi~Rs~PFiILlv~l----- 80 (222)
T COG2011 6 MSNDLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLVAL----- 80 (222)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH-----
T ss_conf 006579999999999999999999999999876634367817886130088999999999987512099999999-----
Q ss_pred HHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHH
Q ss_conf 30121034441037203520100035453556700468877889999999999999986431122332045542101035
Q gi|254780171|r 154 SVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLP 233 (398)
Q Consensus 154 ~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p 233 (398)
+|.-|
T Consensus 81 --iP~Tr------------------------------------------------------------------------- 85 (222)
T COG2011 81 --IPLTR------------------------------------------------------------------------- 85 (222)
T ss_pred --HHHHH-------------------------------------------------------------------------
T ss_conf --98899-------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 58999765444332210013111268214878999999999997787999999999834636789998968998998889
Q gi|254780171|r 234 TLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 234 ~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~ 313 (398)
+.. |.++-+ .|++..|++....|.|..+-.++..||||-.|||+|+|-|++|..++
T Consensus 86 ----~iv------------------GTsiG~--~AAivPL~i~a~PF~ARlve~aL~EVd~GvIEAA~amGAs~~~II~k 141 (222)
T COG2011 86 ----LIV------------------GTSIGT--TAAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRK 141 (222)
T ss_pred ----HHH------------------HCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHH
T ss_conf ----997------------------265253--04774167888889999999999744725899999849988888787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87689999974104789999997549999999999999999998313775899999999999999999999999967874
Q gi|254780171|r 314 VLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 314 VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
|.+|.|+.-.+-..+-..++++-.|+.|-+||=--|=..+-.-.-|-++ -|++..+.++-+++...+-.+-||+-||+.
T Consensus 142 VlLpEa~p~li~g~Tvt~I~LIg~SAMAGaIGgGGLGdlAiryGY~Rf~-~~Vm~~~viillilVq~iQ~~Gd~l~~r~~ 220 (222)
T COG2011 142 VLLPEALPGLVSGITVTLISLIGYSAMAGAIGGGGLGDLAIRYGYQRFN-TDVMVVAVVILLILVQLIQSLGDRLVRRLD 220 (222)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3262136789988999999998088883022667336999998788558-831579999999999999999899999971
No 17
>PRK10160 taurine transporter subunit; Provisional
Probab=99.63 E-value=1.4e-12 Score=95.37 Aligned_cols=260 Identities=15% Similarity=0.174 Sum_probs=159.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHH-HHHH
Q ss_conf 233110332038899999999999999999999999999999972887781213889984437542235686526-9999
Q gi|254780171|r 11 RYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSY-ATAI 89 (398)
Q Consensus 11 ~~~~~~~~~~d~~~~~~~~Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~~~sy-~~a~ 89 (398)
+.-.|+.-||-+..|.+...+..++.++.. |+.... .+.-. =.+| |+.-++-+.+.+-..++.+ -..+
T Consensus 8 ~~~~r~~~w~~~~~~~~~l~~~~l~~~l~~-W~~~~~-------~~~i~-~~~l--P~P~~V~~~l~~~~~~~~~~~g~l 76 (275)
T PRK10160 8 KLHSRRLKWRWPLSRQVTLSIGTLAVLLTV-WWAVAA-------LQLIS-PLFL--PPPQQVLAKLLTIAGPQGFMDATL 76 (275)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HCCCC-CCCC--CCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 765054331136889899999999999999-999998-------22569-6437--998999999999843356677549
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCE
Q ss_conf 99999999999999999999999999996264246787799999999501469999999999873012103444103720
Q gi|254780171|r 90 LVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGM 169 (398)
Q Consensus 90 ~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~ 169 (398)
..-+.-|+.-.+.|..+|+++|+.+|+.- ..++.+++.-.-|++++|.+|.+..+-+. .+.
T Consensus 77 ~~~~~~Tl~r~~~Gf~la~~~Gv~lGil~-g~~~~~~~~l~P~l~~l~~iP~ial~Pl~--ilw---------------- 137 (275)
T PRK10160 77 WQHLAASLTRIVLALLAAVVIGIPVGIAM-GLSPTVRGILDPLIELYRPVPPLAYLPLM--VIW---------------- 137 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHH--HHH----------------
T ss_conf 99999999999999999999999999999-98799999999999999858899999999--985----------------
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 35201000354535567004688778899999999999999864311223320455421010355899976544433221
Q gi|254780171|r 170 FLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249 (398)
Q Consensus 170 flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p 249 (398)
...++...
T Consensus 138 -----------fG~g~~~~------------------------------------------------------------- 145 (275)
T PRK10160 138 -----------FGIGETSK------------------------------------------------------------- 145 (275)
T ss_pred -----------HCCCCCCH-------------------------------------------------------------
T ss_conf -----------35784006-------------------------------------------------------------
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00131112682148789999999999977879999999998346367899989689989988898768999997410478
Q gi|254780171|r 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTS 329 (398)
Q Consensus 250 ~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~n 329 (398)
++...+.+--.+.-....|+.+||+...|+|+++|.|++|.+++|++|+|+..++..+-.
T Consensus 146 --------------------i~vv~l~~~fpi~~nt~~Gvr~vd~~l~e~ar~~gas~~q~~~~V~lP~alP~i~~GlRi 205 (275)
T PRK10160 146 --------------------ILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRI 205 (275)
T ss_pred --------------------HEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------101028754089999999997189999999998299999999998888789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997549999999999999999998313775899999999999999999999999967874
Q gi|254780171|r 330 QYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 330 q~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
..-.-.+..-.+-.+|-.+=.+.-=....++++.-+ +....+...++.+.+..+++++|||+-
T Consensus 206 ~~~~a~~~~v~aE~l~~~~GLG~~I~~a~~~~~~~~-~~a~ii~i~llg~~l~~~~~~lerrl~ 268 (275)
T PRK10160 206 GLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDV-VLAGIAVIAIIAFLLELGLRALQRRLT 268 (275)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998347987899999998637899-999999999999999999999998918
No 18
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.61 E-value=1.8e-12 Score=94.67 Aligned_cols=133 Identities=17% Similarity=0.097 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
..+.+++.+..+-.|+--.+.++++++|+.+.|||+.+|=+++|++|+|++|+...-++....=-++.-+++=.....+|
T Consensus 150 ~~~vii~~v~~~lPf~~l~l~a~l~~i~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~s~~~F~~~~~lg 229 (285)
T PRK09497 150 ESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLG 229 (285)
T ss_pred HHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHHHHHHHHEEEECC
T ss_conf 98887875313120677437878840896899999875999789132022081089999999999999988762100104
Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999983137--7589999999999999999999999996787430479
Q gi|254780171|r 346 FADLVSVGGTIINQTG--QAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 (398)
Q Consensus 346 ~~dl~~~~~~~~~~t~--~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er~ 398 (398)
=.+-...+..+.+|.. +-.+.=...+++-++++..+..+-.+.+|++.-|||.
T Consensus 230 G~~~~~l~~~i~~~~~~~~~~~~aaA~svil~~i~~~~~~i~~r~~k~~~kk~~~ 284 (285)
T PRK09497 230 GAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVEL 284 (285)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
T ss_conf 8975529999999998706906999999999999999999999999995301416
No 19
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=99.61 E-value=8.3e-12 Score=90.65 Aligned_cols=216 Identities=15% Similarity=0.118 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
Q ss_conf 99999999999999999999999999999962642467877999999995014699999999998730121034441037
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPF 167 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~ 167 (398)
.++.-+.||+.+++.+.++++++|+.++..---.+.-.|++-...+.+---+|..+.-+.|+...-.
T Consensus 6 ~~w~al~~Sl~~a~~s~~~~~~ig~~~A~~l~r~~~~~~~~l~~l~~lp~~~P~iv~~~~~~~~~~~------------- 72 (229)
T PRK09421 6 PEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSVVHLPLVLPPVVTGYLLLISMGR------------- 72 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_conf 9999999999999999999999999999999961353089999999999998999999999997144-------------
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 20352010003545355670046887788999999999999998643112233204554210103558999765444332
Q gi|254780171|r 168 GMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 (398)
Q Consensus 168 ~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 247 (398)
.|..-.+. ..+
T Consensus 73 ------~g~~~~~l-----------------------------------------------------~~~---------- 83 (229)
T PRK09421 73 ------RGFIGQWL-----------------------------------------------------YEW---------- 83 (229)
T ss_pred ------CCCCHHHH-----------------------------------------------------HHH----------
T ss_conf ------58526789-----------------------------------------------------998----------
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001311126821487899999999999778799999999983463678999896899899888987689999974104
Q gi|254780171|r 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398)
Q Consensus 248 ~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398)
.|......+....++.++..-.|+.-.++++++++|+...|||+.+|-+++|++++|++|++...++=..
T Consensus 84 ----------~gi~~~~~~~g~~l~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~lGAs~~~~f~~V~lPl~~P~i~~~~ 153 (229)
T PRK09421 84 ----------FGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGT 153 (229)
T ss_pred ----------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------2822234599999999999999999999999985998999999885992646759989998999999999
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHH-HHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999754999999--99999999-9999--831377589999999999999999999999996787430
Q gi|254780171|r 328 TSQYLNLLKNSSLAVAV--GFADLVSV-GGTI--INQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 328 ~nq~i~l~K~SSLa~~I--g~~dl~~~-~~~~--~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
.-.++.-+.|-...... +.++-+.+ .-.+ ..+++.....-...+++-+++++..-.+.+|+.||-+-+
T Consensus 154 il~F~~s~~ef~~~~~l~~~~p~~~~tl~~~iy~~~~~~~~~~~aa~l~~v~i~~~~~~ll~~~~l~rR~~~r 226 (229)
T PRK09421 154 VLAFARSLGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKR 226 (229)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999769998954899860217999999987389689999999999999999999999999998765
No 20
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=9e-12 Score=90.45 Aligned_cols=192 Identities=22% Similarity=0.323 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 26999999999999999999999999999999996---264246787799999999501469999999999873012103
Q gi|254780171|r 84 SYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR---LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPD 160 (398)
Q Consensus 84 sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R---lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~ 160 (398)
++..-.+..++-|+..|+.|-++|+++++.+|+.- +++|+.++...+...+++|-+|-++.-.++-.++
T Consensus 82 ~~~~~~~~~ll~Tl~ma~~gT~l~~i~aipl~flaa~n~~~~~~~~~~~r~ll~~iR~iP~iv~a~ifv~~~-------- 153 (283)
T COG3639 82 SQLPDILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWALLFVAAF-------- 153 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 003157999999999999999999999999999973125864128999999999997642999999999985--------
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
Q ss_conf 44410372035201000354535567004688778899999999999999864311223320455421010355899976
Q gi|254780171|r 161 HSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL 240 (398)
Q Consensus 161 ~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~ 240 (398)
T Consensus 154 -------------------------------------------------------------------------------- 153 (283)
T COG3639 154 -------------------------------------------------------------------------------- 153 (283)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 54443322100131112682148789999999999977879999999998346367899989689989988898768999
Q gi|254780171|r 241 KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAM 320 (398)
Q Consensus 241 ~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAl 320 (398)
| +.-.|+++|+.+++....+.-+..+++++|+|+.||-+|.|.|+.|..++=++||
T Consensus 154 ------------------g----~G~~agilAl~i~t~g~LgKl~~e~iE~id~~p~e~l~a~Gas~~~~~~~~vlPq-- 209 (283)
T COG3639 154 ------------------G----LGPFAGVLALGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGVLPQ-- 209 (283)
T ss_pred ------------------C----CCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHEECH--
T ss_conf ------------------7----8547789999998021999999999984577678999983686145331120012--
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997410478999----99975499999999999999-9999831377589999999999999999999999996787
Q gi|254780171|r 321 RSIIPPLTSQYL----NLLKNSSLAVAVGFADLVSV-GGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 321 R~~iP~l~nq~i----~l~K~SSLa~~Ig~~dl~~~-~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
+.|++.|..+ ..+.++++...+|.--+-.. .+.+....++..-.+.+...++ ...+-.+.+++-||+
T Consensus 210 --v~p~f~s~~lyrfE~n~R~a~VlG~vGaGGIG~~L~~~~~~~~~d~v~~i~l~i~v~---V~~id~iS~~iR~r~ 281 (283)
T COG3639 210 --IKPNFISYSLYRFESNIRAAAVLGLVGAGGIGQRLMNSISLFQWDKVATIILPILVL---VILIDLISAKIRKRL 281 (283)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf --418899999999998757889987325542779999887440475769999999999---999999999999985
No 21
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=99.58 E-value=7e-12 Score=91.12 Aligned_cols=217 Identities=18% Similarity=0.201 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 99999999999999999999999999999626424678779999999950146999999999987301210344410372
Q gi|254780171|r 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFG 168 (398)
Q Consensus 89 ~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~ 168 (398)
+...+.||+.+++.+.++++++|+.++..=--.+.--+++-...+.+.=-+|..+--+-|.... .
T Consensus 90 ~~~al~nTl~~a~~~t~~~lvlG~~lA~~L~r~~f~g~~~l~~ll~lp~~lP~~v~a~a~~~l~-~-------------- 154 (312)
T TIGR03226 90 FRDALGNTLQIAFAAAAGALLLGSALAAILFFIPFPGAELIGRFLDLFIAFPSFLIAFAFIFIY-G-------------- 154 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------------
T ss_conf 9999999999999999999999999999999623762899999999999988999999999998-3--------------
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 03520100035453556700468877889999999999999986431122332045542101035589997654443322
Q gi|254780171|r 169 MFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDK 248 (398)
Q Consensus 169 ~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 248 (398)
+.|..- ...+ -. ..++.
T Consensus 155 ----~~G~ln------------------------------~~L~-------------------------~l----~gl~~ 171 (312)
T TIGR03226 155 ----SAGLLN------------------------------GALM-------------------------RA----FAFDA 171 (312)
T ss_pred ----CCCHHH------------------------------HHHH-------------------------HH----CCCCC
T ss_conf ----577077------------------------------9999-------------------------96----28667
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10013111268214878999999999997787999999999834636789998968998998889876899999741047
Q gi|254780171|r 249 PVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLT 328 (398)
Q Consensus 249 p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~ 328 (398)
|.. .......+.+++.+.++--|+.-.++++++++|+.+.|||+.+|-++||++|+|++|+....++-...
T Consensus 172 ~p~---------~~l~s~~gVvla~i~~~~Pf~~l~~~a~l~~id~~l~EAA~~lGAs~~~~Fr~VtLPll~P~i~ag~l 242 (312)
T TIGR03226 172 PPL---------DFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGI 242 (312)
T ss_pred CCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 745---------77740999999999998999999999999968978999998849998886787427846899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999975499999999999999999983137--7589999999999999999999999996787
Q gi|254780171|r 329 SQYLNLLKNSSLAVAVGFADLVSVGGTIINQTG--QAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 329 nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~--~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
=.++..+.+=.....+|=.+.......+.+|-. .-...=...+++-+++++.+-.+.+|++||-
T Consensus 243 L~Fi~~~~~F~~~~~lgg~~~~tl~~~Iy~~~~~~~d~~~AaAlavillv~~l~l~~l~r~~~rR~ 308 (312)
T TIGR03226 243 LCFLLTLNEFGILLFIGAAGLITLPMAIYSKAILDIDLPAAAAGALIMIALSLALFALYRLAARRA 308 (312)
T ss_pred HHHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999977541134408997017999999998757989999999999999999999999998763
No 22
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.57 E-value=2.1e-12 Score=94.26 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 999999999778799999999983463678999896899899888987689999974104789999997549999999--
Q gi|254780171|r 268 SLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG-- 345 (398)
Q Consensus 268 a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig-- 345 (398)
+.+....++.+.|+....+.+++++|+++.|||++.|+|++|+++++++|+++..++..+...+...++++..+..++
T Consensus 54 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~ 133 (183)
T pfam00528 54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999997068999999998699843412992189899999999999999999999999999368
Q ss_pred --HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --999999999998313775899999999999999999999999967874
Q gi|254780171|r 346 --FADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 346 --~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
...+...+.... +...........++.++.+++....+.+++|+|++
T Consensus 134 ~GlG~~~~~a~~~~-d~~~~~~~~~~~~~~~~~~~~~~d~l~~~ldpr~r 182 (183)
T pfam00528 134 PGLGLLLIEAILGY-DYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182 (183)
T ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 96759999999977-09999999999999999999999999987391017
No 23
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=99.57 E-value=2.1e-11 Score=88.21 Aligned_cols=207 Identities=15% Similarity=0.154 Sum_probs=132.1
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99844375422356865269999999999999999999999999999999962642467877999999995014699999
Q gi|254780171|r 67 RAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIF 146 (398)
Q Consensus 67 ~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~ 146 (398)
|+.-++-+.+.+-..+++ ++..+..|+.-.+.|..+|.++|+.+|+. ...++.+++...-++++.|.+|.+..+-
T Consensus 40 P~P~~V~~~~~~l~~~g~----l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil-~g~~~~~~~~~~P~~~~l~~iP~ia~~P 114 (263)
T PRK11365 40 PSPEGVVMAFWTLSASGE----LWQHLAISSWRALIGFSIGGSLGLILGLI-SGLSRWGERLLDTSIQMLRNVPHLALIP 114 (263)
T ss_pred CCHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCHHHHHHHHCCHHHHHH
T ss_conf 998999999999854845----99999999999999999999999999999-9986999987585999997657999999
Q ss_pred HH--HHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99--9998730121034441037203520100035453556700468877889999999999999986431122332045
Q gi|254780171|r 147 FL--YKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYI 224 (398)
Q Consensus 147 fw--y~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~ 224 (398)
.. +++.
T Consensus 115 l~ilwfG~------------------------------------------------------------------------ 122 (263)
T PRK11365 115 LVILWFGI------------------------------------------------------------------------ 122 (263)
T ss_pred HHHHHHCC------------------------------------------------------------------------
T ss_conf 99999715------------------------------------------------------------------------
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 54210103558999765444332210013111268214878999999999997787999999999834636789998968
Q gi|254780171|r 225 STFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALG 304 (398)
Q Consensus 225 ~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLG 304 (398)
...+ -+....+.+-=.+.-..+.|++++|+...|+|+++|
T Consensus 123 ------------------------------------g~~~----~i~~i~~~~~~pi~~nt~~Gv~~v~~~~~~~ar~~g 162 (263)
T PRK11365 123 ------------------------------------DESA----KIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYG 162 (263)
T ss_pred ------------------------------------CCCH----HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf ------------------------------------7420----447886510428899998887549999999998729
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998998889876899999741047899999975499999999999999999--983137758999999999999999999
Q gi|254780171|r 305 LTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGT--IINQTGQAIEIILIWMFIYLSLSIMIA 382 (398)
Q Consensus 305 ls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~--~~~~t~~~~e~~~i~~~~Yl~isl~iS 382 (398)
.|++|.+++|++|.|+..++-.+-.-.-.-.+..=.+-.+|-.+ +.+.. ...+.++.-.++. .++.--++.+.+.
T Consensus 163 ~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~~~--GLG~~i~~a~~~~~~~~v~a-~ii~i~llg~~l~ 239 (263)
T PRK11365 163 LSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANS--GIGYLAMNAREFLQTDVVVV-AIILYALLGKLAD 239 (263)
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHH
T ss_conf 99999999989800688999999999999999999999984469--88899999998706889999-9999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999967874
Q gi|254780171|r 383 LFMNRLNAKIA 393 (398)
Q Consensus 383 ~~~n~~~rr~~ 393 (398)
.+++++|||.-
T Consensus 240 ~~~~~lerrll 250 (263)
T PRK11365 240 VSAQLLERLWL 250 (263)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999938
No 24
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=99.56 E-value=1.7e-11 Score=88.70 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
+.+.+++.+.++-.|..-.++++++++|+...|||+.+|-+++|++|+|++|++..-++-...=.++.-+.|=.....++
T Consensus 128 ~~~lil~~~~~~lP~~~~~i~~~l~~i~~~l~EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~ef~~~~~l~ 207 (257)
T PRK09500 128 FWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVT 207 (257)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999888885150279999999971796999999872999879636312984799999999999999999999999752
Q ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999983--1377589999999999999999999999996787
Q gi|254780171|r 346 FADLVSVGGTIIN--QTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 346 ~~dl~~~~~~~~~--~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
=+|.......+.+ ..++. +.....+.+.+++++.+-.+.+++.||-
T Consensus 208 g~~~~tlp~~i~~~~~~~~~-~~~~Ala~il~~i~~~~~~l~~~l~r~~ 255 (257)
T PRK09500 208 GPSYEILPLKIYSMVKVGVS-PEVNALATILLVLSLVLVILSQLLARDK 255 (257)
T ss_pred CCCCEEHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89960289999999873787-5999999999999999999999986654
No 25
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=9.2e-10 Score=78.21 Aligned_cols=271 Identities=20% Similarity=0.294 Sum_probs=165.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCC---CHHH-HHHHHH
Q ss_conf 20388999999--99999999999999999999999972887781213889984437542235686---5269-999999
Q gi|254780171|r 19 LYDMRVHNISV--QIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSD---SSYA-TAILVG 92 (398)
Q Consensus 19 ~~d~~~~~~~~--Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~~---~sy~-~a~~vG 92 (398)
+.|..++.... -.+.++.++..+..+..+...-.++.|.. ++|+..+ +++|+ +.|+ ...++
T Consensus 16 ~~e~~~~~l~~~~a~i~v~~~~~i~~fl~~~a~~~f~~~g~~--~~f~~~~----------~W~p~~~~~~~G~l~~i~- 82 (310)
T COG0573 16 RKEKLFKALLFAAAVIVVLALLLILVFLLIEAIPAFQKFGLS--LFFLFGT----------EWNPTNAQPQYGALPPIA- 82 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEECC----------CCCCCCCCCCCCCHHHHH-
T ss_conf 789999999999999999999999999999888999862830--1111067----------538888776556499999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEE
Q ss_conf 999999999999999999999999962--642467877999999995014699999999998730121034441037203
Q gi|254780171|r 93 FVNTFWLAFSGMIPATIIGTLVGAGRL--SANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMF 170 (398)
Q Consensus 93 l~NTl~va~~givlatiLG~~iGi~Rl--S~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~f 170 (398)
.|+.++++++++|.-+|+..++.=- ++.+-+|+.-.--+|+.=.+|-.+-=|| ++.-.-|..++....+....
T Consensus 83 --GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~f---gl~vl~P~l~~~~~~~~~~~ 157 (310)
T COG0573 83 --GTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFF---GLFVLAPFLRDVFGPPLGFN 157 (310)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHHCCCCHHC
T ss_conf --9999999999999878889688877635828788889999999816971177899---99999999999852200010
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52010003545355670046887788999999999999998643112233204554210103558999765444332210
Q gi|254780171|r 171 LNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPV 250 (398)
Q Consensus 171 lsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~ 250 (398)
..+
T Consensus 158 ~~~----------------------------------------------------------------------------- 160 (310)
T COG0573 158 LGP----------------------------------------------------------------------------- 160 (310)
T ss_pred CCC-----------------------------------------------------------------------------
T ss_conf 364-----------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01311126821487899999999999778799999999983463678999896899899888987689999974104789
Q gi|254780171|r 251 LGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQ 330 (398)
Q Consensus 251 l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq 330 (398)
.| +...++-+-|++--=-|++-+-|-.+.+||+-++||+.|||-||||+.++|++|-|..-++-...=-
T Consensus 161 -------~g----~~~L~a~ivL~IMIiP~i~Sls~da~~~VP~~lreas~aLGaTkweti~kVilpaa~~GIv~a~iLg 229 (310)
T COG0573 161 -------FG----ISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGATKWETIRKVILPAARSGIVGAVILG 229 (310)
T ss_pred -------CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------55----2099999999999999999999999995879999999873887100433653986687799999999
Q ss_pred HHHHHHHHH-HHHHHHHH-----HHH----HHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997549-99999999-----999----99999983137-----7589999999999999999999999996787430
Q gi|254780171|r 331 YLNLLKNSS-LAVAVGFA-----DLV----SVGGTIINQTG-----QAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 331 ~i~l~K~SS-La~~Ig~~-----dl~----~~~~~~~~~t~-----~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
.=--+-+|= ...++|-. +++ ..+..+.|+.+ .........+++-+++++.+..+.+++.||.+.+
T Consensus 230 lgRAiGETmAV~mv~Gn~~~~~~slf~p~~Tits~ia~~~gea~~~~~~~aL~~~glvLfvitl~~n~~a~~i~~r~~~~ 309 (310)
T COG0573 230 LGRALGETMAVTMVIGNTARIPLSLFSPGTTLTSIIANEFGEASGGLHTSALFALGLVLFVITLLLNILARYIVRRRRRK 309 (310)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88987289999999617555775436886549999999863123126899999999999999999999999997666336
No 26
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.51 E-value=1.2e-10 Score=83.68 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999997787999999999834636789998968998998889876899999741047899999975499999
Q gi|254780171|r 264 PEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVA 343 (398)
Q Consensus 264 p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~ 343 (398)
..+...+++-.+..-.|.--.++++++++|+...|||++||-+++|++|+|++|+..+-++-...--|+.-+.|=+....
T Consensus 141 ~t~~~liiah~~~~lP~~~~~v~a~l~~id~~leeAA~~LGAs~~~~f~~V~LPli~pgilag~~l~F~~S~~ef~~s~~ 220 (272)
T TIGR03255 141 GSLAIVLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLM 220 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 57999999999999999999999999737930999998869989999999987967999999999999999977615323
Q ss_pred HHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999831377-5899999999999999999999999967874
Q gi|254780171|r 344 VGFADLVSVGGTIINQTGQ-AIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 344 Ig~~dl~~~~~~~~~~t~~-~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
++=+|.....-.+.++..+ ..+.-...+.+.++++...-.+++++.||..
T Consensus 221 l~~~~~~TLpv~i~~~~~~g~~~~aaAls~ili~~s~v~li~~~~~~~R~g 271 (272)
T TIGR03255 221 IYPPGFATLPIAIFGATDRGNIADAAALSILLLAASLLALIAIAAIAKRLG 271 (272)
T ss_pred ECCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 418997247999999987678488999999999999999999999997638
No 27
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.5e-09 Score=76.91 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
Q ss_conf 99999999999999999999999999999--6264246787799999999501469999999999873012103444103
Q gi|254780171|r 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAG--RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLP 166 (398)
Q Consensus 89 ~~vGl~NTl~va~~givlatiLG~~iGi~--RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~ 166 (398)
..--+.||+.+.++++++++-+|+..|+- ...++-.+.++.+..+|..=.+|-.+-=.|-|..+...
T Consensus 69 i~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~----------- 137 (292)
T COG0581 69 IGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVT----------- 137 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------
T ss_conf 699999999999999999998999999999997478729999999999880684499999999999999-----------
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 72035201000354535567004688778899999999999999864311223320455421010355899976544433
Q gi|254780171|r 167 FGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHF 246 (398)
Q Consensus 167 ~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~ 246 (398)
T Consensus 138 -------------------------------------------------------------------------------- 137 (292)
T COG0581 138 -------------------------------------------------------------------------------- 137 (292)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100131112682148789999999999977879999999998346367899989689989988898768999997410
Q gi|254780171|r 247 DKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPP 326 (398)
Q Consensus 247 ~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~ 326 (398)
+ |. ...-.++-++|++-.=-++.-..+.++++||+.++|||.|||.|+||+.++|++|.|++-++-.
T Consensus 138 ----~-------g~--~~S~laGaLaLall~LP~iirtteeaL~~VP~~~ReAs~aLGasKwqtI~~vvlP~A~pGIiTG 204 (292)
T COG0581 138 ----L-------GF--GFSALAGALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITG 204 (292)
T ss_pred ----H-------CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ----7-------77--6179999999999988899999999998089999999997498487897888897147589999
Q ss_pred HHHHHHHHHHHHH-HHHHHHH
Q ss_conf 4789999997549-9999999
Q gi|254780171|r 327 LTSQYLNLLKNSS-LAVAVGF 346 (398)
Q Consensus 327 l~nq~i~l~K~SS-La~~Ig~ 346 (398)
..=-.--..-+|+ |...+|.
T Consensus 205 viLaiaR~~GETAPlL~tag~ 225 (292)
T COG0581 205 VILAIARAAGETAPLLFTAGM 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998724899999653
No 28
>PRK11268 pstA phosphate transporter permease subunit; Provisional
Probab=99.45 E-value=2.1e-09 Score=75.99 Aligned_cols=212 Identities=16% Similarity=0.204 Sum_probs=133.4
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 33110332038899999999999999999999999999999972887781213889984437542235686526999999
Q gi|254780171|r 12 YFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILV 91 (398)
Q Consensus 12 ~~~~~~~~~d~~~~~~~~Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~~~sy~~a~~v 91 (398)
..+.++-++|.-++....-. .+..++..++.+..-....+. ..+++|+.+... ++.+..+ =..-
T Consensus 18 ~~~~rR~~~d~~~~~l~~~~-~~~~i~~L~~Il~~v~~~G~~----~l~~~f~t~~~~----------~~~~~~g-Gi~~ 81 (292)
T PRK11268 18 KMQARRRLKNRIALTLSLAA-MAFGLFWLIWILMSTITLGID----GMSLALFTEMTP----------PPNTEGG-GLAN 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCHH----HCCHHHHCCCCC----------CCCCCCC-CHHH
T ss_conf 99988999989999999999-999999999999999982641----178999838899----------9998887-6699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCE
Q ss_conf 999999999999999999999999996--264246787799999999501469999999999873012103444103720
Q gi|254780171|r 92 GFVNTFWLAFSGMIPATIIGTLVGAGR--LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGM 169 (398)
Q Consensus 92 Gl~NTl~va~~givlatiLG~~iGi~R--lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~ 169 (398)
.+.+|+.++.++.++|+-+|+..|+-= ..++..++++.+.-+|..=.+|-.+-=+|-|..+...
T Consensus 82 aivGTl~~~~~a~lia~Pigi~~aIyL~Eya~~~~~~~~ir~~i~~LagiPSIV~Glfg~~~~v~~-------------- 147 (292)
T PRK11268 82 AIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQ-------------- 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
T ss_conf 999999999999999999999999999997686439999999999984274899999999999985--------------
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 35201000354535567004688778899999999999999864311223320455421010355899976544433221
Q gi|254780171|r 170 FLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249 (398)
Q Consensus 170 flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p 249 (398)
T Consensus 148 -------------------------------------------------------------------------------- 147 (292)
T PRK11268 148 -------------------------------------------------------------------------------- 147 (292)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00131112682148789999999999977879999999998346367899989689989988898768999997410478
Q gi|254780171|r 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTS 329 (398)
Q Consensus 250 ~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~n 329 (398)
.++| ...|+.++|++-.=-++.-.-+.++++||+..+|||.|||.+|||+.++|++|.|.+-++-...-
T Consensus 148 -~~~~----------s~lag~l~LaimilP~i~~~teeaL~~VP~~lreaa~ALGatkw~ti~~VvlP~A~~GI~tgviL 216 (292)
T PRK11268 148 -MEHF----------SGWAGVIALALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLL 216 (292)
T ss_pred -HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEEEEECCCCHHHHHHHHHH
T ss_conf -2125----------57899999999999999999999999599889999998799865762237607637799999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999754999999
Q gi|254780171|r 330 QYLNLLKNSSLAVAV 344 (398)
Q Consensus 330 q~i~l~K~SSLa~~I 344 (398)
-.---.-+|+=....
T Consensus 217 aiaRa~GETApll~t 231 (292)
T PRK11268 217 AIARIAGETAPLLFT 231 (292)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999879999999
No 29
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.45 E-value=9.7e-10 Score=78.06 Aligned_cols=233 Identities=16% Similarity=0.206 Sum_probs=140.4
Q ss_pred CCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8998443754223568--6526999999999999999999999999999999--99626424678779999999950146
Q gi|254780171|r 66 ERAGFEIDQGIVPYTS--DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVG--AGRLSANKLVAWICRVYVEVFRNIPP 141 (398)
Q Consensus 66 ~~agf~I~~~~i~y~~--~~sy~~a~~vGl~NTl~va~~givlatiLG~~iG--i~RlS~N~ll~~la~~YVE~~RN~PL 141 (398)
++..+.+..++-.|.. +|+ .++.-+.||+++++.+-+++.++|+.++ ++|.. .-.|++-..-+-+=--+|.
T Consensus 73 ~~~~~~~~~~l~NY~~lf~d~---~y~~a~~nSL~iA~~sT~i~lliG~P~Ay~iar~~--~~~r~~l~~lvilP~~~s~ 147 (317)
T PRK10683 73 ADGQLSITLNLGNFLQLTDDP---LYFDAYLQSLQVAAISTICCLLIGYPLAWAVAHSK--PSTRNILLLLVILPSWTSF 147 (317)
T ss_pred CCCCEEEEECHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHH
T ss_conf 566315644489899997697---89999999999999999999999999999999388--6178999999999970679
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999998730121034441037203520100035453556700468877889999999999999986431122332
Q gi|254780171|r 142 LVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPL 221 (398)
Q Consensus 142 Llql~fwy~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~ 221 (398)
++..+-|-... . +.|+. + .
T Consensus 148 lVr~~aw~~iL-~------------------~~G~l----------n------------~-------------------- 166 (317)
T PRK10683 148 LIRVYAWMGIL-K------------------NNGVL----------N------------N-------------------- 166 (317)
T ss_pred HHHHHHHHHHH-C------------------CCCHH----------H------------H--------------------
T ss_conf 99999999997-3------------------14348----------7------------8--------------------
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 04554210103558999765444332210013111268214878999999999997787999999999834636789998
Q gi|254780171|r 222 LYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAI 301 (398)
Q Consensus 222 ~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~ 301 (398)
.+.. .+ + .+.| ..+.....+.++|++..+--|+.=.+.++++++|+...|||+
T Consensus 167 ------------~L~~--lG--l-i~~p----------l~ll~t~~aViig~v~~~lPfmvL~l~a~L~~id~~L~EAA~ 219 (317)
T PRK10683 167 ------------FLLW--LG--V-IDQP----------LTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAAL 219 (317)
T ss_pred ------------HHHH--HC--C-CCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf ------------9999--60--4-4676----------322564589999999999999999999999858908999998
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHH
Q ss_conf 96899899888987689999974104789999997549999999999999999998313775--8999999999999999
Q gi|254780171|r 302 ALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQA--IEIILIWMFIYLSLSI 379 (398)
Q Consensus 302 aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~--~e~~~i~~~~Yl~isl 379 (398)
.+|-+++|++++|++|+...-++-...=.++..+.+=.....+|=+|-...++.+.+|-+.. .+.-..++++-+++..
T Consensus 220 ~LGAs~~~~F~~VtLPL~~PGIiag~lLvFi~a~g~F~iP~lLGG~~~~~i~~~i~~~f~~~~dwp~aaAlavvLl~i~i 299 (317)
T PRK10683 220 DLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLI 299 (317)
T ss_pred HCCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 76998655400232062189999999999999988877686642998562999999999874680589999999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999678
Q gi|254780171|r 380 MIALFMNRLNAK 391 (398)
Q Consensus 380 ~iS~~~n~~~rr 391 (398)
......+++++|
T Consensus 300 v~~~~~~r~~~k 311 (317)
T PRK10683 300 VPIMWFHKHQQK 311 (317)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999887
No 30
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=99.43 E-value=9.8e-11 Score=84.12 Aligned_cols=129 Identities=20% Similarity=0.242 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
+...+++...++..|+.-+++++++.+|+.+.|||+.+|-+++|++++|++|+...-++-...=-|+.-+-|=.....+|
T Consensus 140 ~~~i~i~~~~~~~P~~~~~i~a~l~~id~~leEAA~~LGAs~~~~f~~V~LPli~Pgiiag~il~F~~s~~ef~~~~~l~ 219 (281)
T PRK10592 140 MLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVS 219 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_conf 78999999999999999999999985892799999881999888834354171159899999999999998777886210
Q ss_pred HHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998313--77589999999999999999999999996787430
Q gi|254780171|r 346 FADLVSVGGTIINQT--GQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 346 ~~dl~~~~~~~~~~t--~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
=++-....-.+.++. +.. +....++.+.+.++..+..+.+|+.+|-+-+
T Consensus 220 g~~~~TLpv~iy~~~~~~~~-p~~~A~~~l~~~v~~~~~~ia~~l~~R~~k~ 270 (281)
T PRK10592 220 GPGATTLPMLVFSSVRMGVN-PEINALATLILGVVGIVGFIAWYLMARAEKQ 270 (281)
T ss_pred CCCCCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89984569999999871798-7999999999999999999999999888988
No 31
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=5.7e-10 Score=79.44 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999977879999999998346367899989689989988898768999997410478999999754999999
Q gi|254780171|r 265 EFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAV 344 (398)
Q Consensus 265 ~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~I 344 (398)
.+...+++++++.--|..-+++++++++|+.++|||+.+|++++|++|+|.+|++.+.+.....=-++..+-|=+.....
T Consensus 139 g~~Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~~~Lvf~~~l~dFg~p~~L 218 (540)
T COG1178 139 GLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLADFGTPLIL 218 (540)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999982599999999998389469999987599832288886788777899999999999999864469997
Q ss_pred HHH--HHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999--9999-999998313775899999999999999999999999967
Q gi|254780171|r 345 GFA--DLVS-VGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNA 390 (398)
Q Consensus 345 g~~--dl~~-~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~r 390 (398)
|.+ -+.. +.+...++. ....-...++.=+.+|..+-...+|..|
T Consensus 219 G~~~~Tl~t~IY~~~~~~~--~~~~Aa~la~lll~~~~~ll~~~~~~~~ 265 (540)
T COG1178 219 GGGYTTLETAIYQAIMSSF--DLARAALLALLLLLITAALLLLERRLRR 265 (540)
T ss_pred CCCCCEEHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6987332999999998458--8256999999999999999999999850
No 32
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=1.9e-09 Score=76.34 Aligned_cols=234 Identities=15% Similarity=0.231 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999972887781213889984437542235686526999999999999999999999
Q gi|254780171|r 27 ISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIP 106 (398)
Q Consensus 27 ~~~Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givl 106 (398)
...+...++ ....+|.+..... ..+-.--|+.-++-+.+.+..++. .+..-..-|+.-++.|-.+
T Consensus 12 ~~~~~~~~~-~~l~~Wq~~~~~~----------~~~~~~LP~P~~V~~~~~~~~~~g----~L~~~~~~Sl~rv~~Gf~l 76 (258)
T COG0600 12 ALLPLLGLL-ALLALWQLAARLG----------LIPPFILPSPSAVLAALVELLASG----ELFQHLLASLLRVLLGFAL 76 (258)
T ss_pred HHHHHHHHH-HHHHHHHHHHHCC----------CCCCCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHH
T ss_conf 999999999-9999999998603----------489877899899999999882375----5999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 999999999996264246787799999999501469999999--999873012103444103720352010003545355
Q gi|254780171|r 107 ATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFL--YKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMD 184 (398)
Q Consensus 107 atiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fw--y~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~ 184 (398)
|+.+|+.+|+.= ..|+.+++.-.-++++.|++|.+-.+-.. +++. +
T Consensus 77 a~~~gi~lgil~-g~~~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG~-------------------------------g 124 (258)
T COG0600 77 AAVLGIPLGILM-GLSRLLERLLDPLVQVLRPIPPLALAPLAILWFGI-------------------------------G 124 (258)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------------------------C
T ss_conf 999999999999-85799999996999999317779999999999907-------------------------------9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 67004688778899999999999999864311223320455421010355899976544433221001311126821487
Q gi|254780171|r 185 TNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSP 264 (398)
Q Consensus 185 ~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p 264 (398)
+.. .+++.
T Consensus 125 ~~s-----~i~i~------------------------------------------------------------------- 132 (258)
T COG0600 125 ETS-----KIVIA------------------------------------------------------------------- 132 (258)
T ss_pred CCH-----HHHHH-------------------------------------------------------------------
T ss_conf 611-----99999-------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999977879999999998346367899989689989988898768999997410478999999754999999
Q gi|254780171|r 265 EFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAV 344 (398)
Q Consensus 265 ~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~I 344 (398)
..+...-..+| ...|+++||+.+.|+|+.+|.|++|.+|+|++|.|+..+.-.+--- -..+...+|
T Consensus 133 -~~~~ffpi~in--------t~~Gvr~v~~~~~~~ar~lgas~~~~l~~v~lP~AlP~i~tgLRia-----~g~aw~~~V 198 (258)
T COG0600 133 -VLGAFFPILIN--------TLDGVRSVDPDLLELARTLGASRWQILRKVILPAALPYIFTGLRIA-----IGLAWIGLV 198 (258)
T ss_pred -HHHHHHHHHHH--------HHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH-----HHHHHHHHH
T ss_conf -99999999999--------9999871899999999980989777877620530078999999999-----999999999
Q ss_pred HHHHHHHH----HH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999----99-9983137758999999999999999999999999678743
Q gi|254780171|r 345 GFADLVSV----GG-TIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIAL 394 (398)
Q Consensus 345 g~~dl~~~----~~-~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l 394 (398)
+.|+... +. ....+.....+.....++++-++.+.+-..+.+.|||+.-
T Consensus 199 -vaE~l~a~~GLG~~i~~a~~~~~~~~v~a~i~~i~~lgll~d~~v~~~er~~~~ 252 (258)
T COG0600 199 -VAELLGASSGLGYLILDARNNLQTDLVFAAILVIALLGLLLDRLVRLLERRLLR 252 (258)
T ss_pred -HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -999970566687999999985167899999999999999999999999999852
No 33
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.39 E-value=4e-10 Score=80.41 Aligned_cols=166 Identities=23% Similarity=0.252 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEE
Q ss_conf 99999999999999999999999999626424678779999999950146999999999987301210344410372035
Q gi|254780171|r 92 GFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFL 171 (398)
Q Consensus 92 Gl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~fl 171 (398)
--.+|+.+...+..+|.++|+.+|+. .++|+-++++.+--.++.+.+|-.+-+.-
T Consensus 87 ~am~Tlalv~~av~la~~iGiPlGI~-~~~s~~~~~~l~pild~mQTiP~fvyLip------------------------ 141 (267)
T TIGR03416 87 ETVETLALVLSATVVCMVIGVPLGIA-AAHRPWLYAIMRPVLDLMQTLPTFVYLIP------------------------ 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHCCCHHHHHHH------------------------
T ss_conf 99999999999999999999999999-98169999999999987431546799999------------------------
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 20100035453556700468877889999999999999986431122332045542101035589997654443322100
Q gi|254780171|r 172 NNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVL 251 (398)
Q Consensus 172 snRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l 251 (398)
..
T Consensus 142 ------------------------------------------------------------------------------~i 143 (267)
T TIGR03416 142 ------------------------------------------------------------------------------AL 143 (267)
T ss_pred ------------------------------------------------------------------------------HH
T ss_conf ------------------------------------------------------------------------------99
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13111268214878999999999997787999999999834636789998968998998889876899999741047899
Q gi|254780171|r 252 GQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQY 331 (398)
Q Consensus 252 ~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~ 331 (398)
.-| |+.. .+++++..+|+-.-+.-...-|+++||+...|||+++|+|++|.+++|.+|-|++.++-.+..-.
T Consensus 144 ~lf----GiG~----~~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i 215 (267)
T TIGR03416 144 VLF----GLGM----VPGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTI 215 (267)
T ss_pred HHH----CCCC----HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 994----8870----56999999999889999999999856768999999839989889799418415899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCHHHHHH
Q ss_conf 9999754999999999999999--999831377589999
Q gi|254780171|r 332 LNLLKNSSLAVAVGFADLVSVG--GTIINQTGQAIEIIL 368 (398)
Q Consensus 332 i~l~K~SSLa~~Ig~~dl~~~~--~~~~~~t~~~~e~~~ 368 (398)
+.-+--..++..||-.++=..- .....+.++.+|.-.
T Consensus 216 ~~al~mvviaa~IGa~GLG~~v~~~l~~~~~g~~l~~gi 254 (267)
T TIGR03416 216 MLSLSMVVIAALVGADGLGVPVVRALNTVNIALGFEAGL 254 (267)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999999999678853699999986335688999999
No 34
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.38 E-value=1.6e-08 Score=70.68 Aligned_cols=130 Identities=13% Similarity=0.070 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999997787999999999834636789998968998998889876899999741047899999975499999
Q gi|254780171|r 264 PEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVA 343 (398)
Q Consensus 264 p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~ 343 (398)
..+..++++.++-.-++-.-.++++++.+|+...|||+.+|-++++++|+|++|...+-++=...--|+..+|+-+....
T Consensus 407 gT~~iLilay~vr~lp~~~~~i~a~l~qI~~~leeAA~~lGas~~~~~~rI~lPLl~p~ilag~~lvFi~~m~El~~tll 486 (546)
T TIGR03262 407 GTMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVF 486 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHCEEEE
T ss_conf 89999999999999999899999998748950999998759796667253207802899999999999999987687878
Q ss_pred HHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998313--7758999999999999999999999999678743
Q gi|254780171|r 344 VGFADLVSVGGTIINQT--GQAIEIILIWMFIYLSLSIMIALFMNRLNAKIAL 394 (398)
Q Consensus 344 Ig~~dl~~~~~~~~~~t--~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l 394 (398)
..-+|.--.+..+.++. |+.-+ -...+++-..++.....++++..||.+-
T Consensus 487 L~~~~~~tl~~~i~~~~~~g~~~~-Aaa~s~ilvli~~i~~~l~~~~~rr~~~ 538 (546)
T TIGR03262 487 LYSPDTKLASVAILNMDDAGDIAP-AAAMATLIVLTSAVAKLLFALASRRLLR 538 (546)
T ss_pred ECCCCCEEHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 739998029999999865877588-9999999999999999999999988446
No 35
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.37 E-value=7.2e-09 Score=72.74 Aligned_cols=122 Identities=12% Similarity=0.154 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999977879999999998346367899989689989988898768999997410478999999754999999999999
Q gi|254780171|r 271 IALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLV 350 (398)
Q Consensus 271 iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~ 350 (398)
++-.+-.-.|.--..+++++.+|+..-|||+++|.++++++|+|.+|...+-++=...--++..+||=+.....+-+|..
T Consensus 410 l~~~l~~lP~a~r~l~~~l~~i~~~le~aA~sLGas~~~~f~~I~lPll~p~i~~a~~l~F~~smgEl~a~~ll~~~~~~ 489 (536)
T PRK09433 410 LVNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLVEWRALRRPLAQAFAFACALSLGDFGVIALFGSQDFR 489 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCCCC
T ss_conf 99999999999999999999701759999988699987896985398309999999999999998753702133399986
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998313--775899999999999999999999999967874
Q gi|254780171|r 351 SVGGTIINQT--GQAIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 351 ~~~~~~~~~t--~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
...-.+.++. +|.-|.- ..+++-+.+|+..-.+.+++++|-+
T Consensus 490 TLp~~iy~~~~~~~~~~Aa-~~allL~ll~~~~f~l~er~~~~~~ 533 (536)
T PRK09433 490 TLPYLLYQQLGSYRSQDAA-VTALLLLLLCLLLFTLIERLPGRHA 533 (536)
T ss_pred CHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1899999987276768899-9999999999999999998613566
No 36
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=99.37 E-value=3.4e-09 Score=74.73 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999999778799999999983463678999896899899888987689999974104789999997549999
Q gi|254780171|r 263 SPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAV 342 (398)
Q Consensus 263 ~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~ 342 (398)
...+...++|-+..+-.|+.-+++++++++|+.-.|||+.||=+++|++|+|++|....-++-...=-|..-+-|-.+..
T Consensus 132 ~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~ 211 (267)
T COG1177 132 PGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITF 211 (267)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75299999999999866899999999973896799999876998888989976975279999999999999986778631
Q ss_pred HHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999831377-58999999999999999999999999678
Q gi|254780171|r 343 AVGFADLVSVGGTIINQTGQ-AIEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 343 ~Ig~~dl~~~~~~~~~~t~~-~~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
.++=++-......+.++.-+ .-+....++..++.++..+.....+..||
T Consensus 212 f~~gp~~~TLP~~i~s~~r~~~~P~i~Alstll~~~~~ll~~~~~~~~~~ 261 (267)
T COG1177 212 FLAGPGFTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILLASRLLRR 261 (267)
T ss_pred EECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13289987218999998655898199999999999999999999998643
No 37
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=99.33 E-value=5.7e-09 Score=73.38 Aligned_cols=126 Identities=24% Similarity=0.320 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21487899999999999778799999999983463678999896899899888987689999974104789999997549
Q gi|254780171|r 260 STVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSS 339 (398)
Q Consensus 260 ~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SS 339 (398)
+...|. +++|.+|+=--+-+..-.|+.+||+.-.|||+++|||++|.+++|-+|-|+.+++-.+-.-.+..+--.+
T Consensus 88 iG~~PA----iiAL~lYsLLPIvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelPlAlPvIlaGIR~a~V~~ig~At 163 (221)
T COG1174 88 IGLTPA----IIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIGTAT 163 (221)
T ss_pred CCCCHH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 886389----9999999971999999999814987789998865998787989741200189998648999999999999
Q ss_pred HHHHHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999---99999999983137758999999999999999999999999678743
Q gi|254780171|r 340 LAVAVGFA---DLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIAL 394 (398)
Q Consensus 340 La~~Ig~~---dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l 394 (398)
+++.||-- |....+-... + .+..+.-++.=-.+...+..++++.||+..-
T Consensus 164 iaa~IGAGGLG~~I~~Gl~~~-n----~~~il~Gai~valLAi~~d~ll~~~e~~l~~ 216 (221)
T COG1174 164 IAALIGAGGLGDLIFRGLNLN-N----TALILAGAIPVALLAILADVLLGLLERALTP 216 (221)
T ss_pred HHHHHCCCCCHHHHHHHHCCC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999982774428998204016-6----7999996999999999999999999998340
No 38
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family describes PstC, which is homologous to PstA (IPR005672 from INTERPRO). In the Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016021 integral to membrane.
Probab=99.33 E-value=5.6e-08 Score=67.34 Aligned_cols=281 Identities=20% Similarity=0.296 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC----CCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999728877812138----899844375422356865269-99999999999999
Q gi|254780171|r 26 NISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLS----ERAGFEIDQGIVPYTSDSSYA-TAILVGFVNTFWLA 100 (398)
Q Consensus 26 ~~~~Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~----~~agf~I~~~~i~y~~~~sy~-~a~~vGl~NTl~va 100 (398)
..+.-++.++.+....+.+..++..-.++.|+. .+||+. ++..= +..-+-.-++.|+ ..++ ..|+.+|
T Consensus 8 ~~~~~~~~~~~~~~i~~fl~~~a~~~f~~~g~s-~~~f~~~~~W~~~~~---~~~a~~p~~~~yG~l~~i---~GTl~~~ 80 (317)
T TIGR02138 8 LLIAAVIIVLVLLLIVLFLLIEAIPAFEKNGIS-LLNFLTGTVWDPDSK---GAEADTPVQEQYGALPLI---VGTLITS 80 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCC---CCCCCCCCHHHHHHHHHH---HHHHHHH
T ss_conf 999999999999999999999778888745874-000143120055433---101578730245669999---9999999
Q ss_pred HHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCC
Q ss_conf 99999999999999999--6264246787799999999501469999999999873012103444103720352010003
Q gi|254780171|r 101 FSGMIPATIIGTLVGAG--RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSF 178 (398)
Q Consensus 101 ~~givlatiLG~~iGi~--RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~flsnRGL~i 178 (398)
.+++++|+-+|+..+|- -.++.++.+-+... ||+.=.+|=.+==| +++.-.-|..++-...+ +++
T Consensus 81 ~~A~liA~P~~i~~Aif~~e~aP~~~~~~l~~~-~ELLAgIPSVvYG~---wG~~~l~P~l~~~~~~~----~~~----- 147 (317)
T TIGR02138 81 LIAILIAVPVGIGIAIFLSEIAPKRVKSVLKPV-VELLAGIPSVVYGF---WGLFVLVPFLKDHFQPF----LGS----- 147 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHH-----
T ss_conf 999999999999999999985251135699999-99972235999999---99999999999988678----653-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 54535567004688778899999999999999864311223320455421010355899976544433221001311126
Q gi|254780171|r 179 PTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIG 258 (398)
Q Consensus 179 P~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~g 258 (398)
...++|.++...-..
T Consensus 148 -----------------------------------------------------------------~~~~iP~~~~~~~~~ 162 (317)
T TIGR02138 148 -----------------------------------------------------------------NFGWIPLFGQLFSGP 162 (317)
T ss_pred -----------------------------------------------------------------HCCCCCCCCCCCCCC
T ss_conf -----------------------------------------------------------------135323212236899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q ss_conf 8214878999999999997787999999999834636789998968998998889876899999741047-------899
Q gi|254780171|r 259 GSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLT-------SQY 331 (398)
Q Consensus 259 G~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~-------nq~ 331 (398)
+... ...++-+-|++====+++=+.|-.+.+||+-++||+.|||.||||+-|+|++|-|.+=++=+.. .|=
T Consensus 163 ~~G~--~~L~a~~vL~IMIlPt~as~s~D~~~~VP~~~kea~~ALGAT~wetI~~v~lP~a~~GIv~a~~LglGRAlGET 240 (317)
T TIGR02138 163 PNGY--GLLTAGIVLAIMILPTIASISRDALRAVPRSYKEASLALGATKWETIRKVILPAARSGIVGAVVLGLGRALGET 240 (317)
T ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8316--89999999999999999999999997355678889877068604335553320002189999999999999999
Q ss_pred --HHHHHHH--HHH--HHHHHHHH-HH-HHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --9999754--999--99999999-99-9999983137-------75899999999999999999999999967874
Q gi|254780171|r 332 --LNLLKNS--SLA--VAVGFADL-VS-VGGTIINQTG-------QAIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 332 --i~l~K~S--SLa--~~Ig~~dl-~~-~~~~~~~~t~-------~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
+.++=.. ++- +....-|= .. .+..+.+|.+ ...+.+.-.+++=+++++.+..+.+++.||.+
T Consensus 241 mAV~mv~Gn~p~~~~~~~~~~f~~~~~T~~~~Ia~~~g~a~~g~~~~~~aL~~~glvLfvitl~~n~~~~~i~~~~~ 317 (317)
T TIGR02138 241 MAVAMVIGNAPSLNRPIPLNLFSPYGTTITSLIANEFGEASGGNSVHVSALFALGLVLFVITLLVNILARYIVRRRK 317 (317)
T ss_pred HHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999972432344441202233568999999985066668884268999999999999999999999999853069
No 39
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein.
Probab=99.31 E-value=5.5e-09 Score=73.45 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
+...++++++++-.|.-=.++++++++|+.+.|||+.+|-+++|++++|++|+....+.=+..=-++..+-|=.....+|
T Consensus 133 ~~gii~~~~~~~~P~~~l~~~~al~~~d~~l~eaA~~lGa~~~~~f~~i~lPl~~P~i~~~~lLvf~~~l~~Fg~p~ilG 212 (546)
T TIGR03262 133 FWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIG 212 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999971998999999872999889999944786579999999999999975332588843
No 40
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional
Probab=99.25 E-value=1e-07 Score=65.69 Aligned_cols=196 Identities=16% Similarity=0.224 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 526999999999999999999999999999999996-2642467877999999995014699999999998730121034
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDH 161 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~ 161 (398)
...+.-.+.|.-+|+.+++.+.++++++|+++|+.- ..+.| +..+-...+|++-.+|-++..+..-..+
T Consensus 83 RDv~srll~G~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG~-~D~il~ri~Dv~~aiP~lll~i~l~~~~--------- 152 (296)
T PRK09881 83 RDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGR-ADAIIMRIMDIMLSIPSLVLTMALAAAL--------- 152 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCHHHHHHHHHHH---------
T ss_conf 269999888799999999999999999999999988881760-7665567776301586057778887651---------
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 44103720352010003545355670046887788999999999999998643112233204554210103558999765
Q gi|254780171|r 162 SIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALK 241 (398)
Q Consensus 162 ~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~ 241 (398)
T Consensus 153 -------------------------------------------------------------------------------- 152 (296)
T PRK09881 153 -------------------------------------------------------------------------------- 152 (296)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44433221001311126821487899999999999778799999999983463-67899989689989988898768999
Q gi|254780171|r 242 YQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPR-GQMEAAIALGLTHRKATRLVLLPQAM 320 (398)
Q Consensus 242 ~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpk-GQ~EAA~aLGls~~q~~r~VIlPQAl 320 (398)
.|+....++++++..-...+.++|+-.+++.+ .=.|||+++|.++++.+++-|+|..+
T Consensus 153 ---------------------g~~~~~~il~i~l~~w~~~aR~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~ 211 (296)
T PRK09881 153 ---------------------GPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSL 211 (296)
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHH
T ss_conf ---------------------67516888999998799999999999999963499999998398867854142766618
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------H---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997410478999999754999999999------9---9999999983137758999999999999999999999999678
Q gi|254780171|r 321 RSIIPPLTSQYLNLLKNSSLAVAVGFA------D---LVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 321 R~~iP~l~nq~i~l~K~SSLa~~Ig~~------d---l~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
..++-..+.++-..+-.-|-.+.+|+- | +.+.++.-... .. -....-++......+.+..+-+.+++.
T Consensus 212 ~~liv~~~~~~~~aIl~ea~LsFLGlG~~pp~~sWG~mi~~~~~~~~~--~~-w~~~~Pg~~i~l~vl~~nllgdgLrd~ 288 (296)
T PRK09881 212 PPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLD--QW-WYCAFPGAAILLTAVGFNLFGDGIRDL 288 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999990378999998599999999999987--72-999999999999999999999999998
Q ss_pred H
Q ss_conf 7
Q gi|254780171|r 392 I 392 (398)
Q Consensus 392 ~ 392 (398)
.
T Consensus 289 l 289 (296)
T PRK09881 289 L 289 (296)
T ss_pred C
T ss_conf 1
No 41
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=99.22 E-value=4.7e-08 Score=67.78 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
+...+++.+++.-.|..-.++++++++|..|+|||+++|.+++|++|+|.+|+....+.+...=-++-.+-|=+.....|
T Consensus 139 ~~gil~a~~~~~~P~~~~~~~~~l~~i~~~~~e~A~~LG~~~~~~f~~v~lP~~~pai~~~~~LVF~~~~~sF~~vl~LG 218 (536)
T PRK09433 139 LQGILLAHVFFNLPLATRLLLQSLESIPSEQRQLAAQLGMRGWQFFRLVEWPWLRRQLPPVAALIFMLCFTSFATVLTLG 218 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999981999999999875989868888634898878899999999999999888999955
Q ss_pred ----HHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----999999-9999983137758999999999999999999999999678743
Q gi|254780171|r 346 ----FADLVS-VGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIAL 394 (398)
Q Consensus 346 ----~~dl~~-~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l 394 (398)
+.-+.- +.|.. +..+. ++.=...+.+=+.++..+-.+.+++++|.+.
T Consensus 219 Ggp~~~Tlev~IYq~~-~~~~D-~~~Aa~La~i~l~i~~~l~~l~~~~~~~~~~ 270 (536)
T PRK09433 219 GGPKATTIELAIYQAL-SFDFD-LARAALLALLQLVLCLLLVLLSQRLSKAIAV 270 (536)
T ss_pred CCCCCHHHHHHHHHHH-HHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8864036899999999-86479-9999999999999999999999998224200
No 42
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=4.1e-08 Score=68.12 Aligned_cols=126 Identities=18% Similarity=0.217 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997787999999999834636789998968998998889876899999741047899999975499999999
Q gi|254780171|r 267 MSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGF 346 (398)
Q Consensus 267 ~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~ 346 (398)
...+++..+-.-+|---.+|++++.+|+.-.|||+++|-+++|++|+|++|-..+-++-...=-|+..+||-|.....+-
T Consensus 409 ~ilv~a~~~~~~p~a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~~a~~l~F~~s~~Elsat~lL~~ 488 (540)
T COG1178 409 LILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLLGS 488 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
T ss_conf 99999999999889999999999877974999998859978779899878730588999999999999755376878638
Q ss_pred HHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999831377-589999999999999999999999996787
Q gi|254780171|r 347 ADLVSVGGTIINQTGQ-AIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 347 ~dl~~~~~~~~~~t~~-~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
+|....+-.+.++.+. ..+.=...+.+...+|.......++.+++-
T Consensus 489 ~~~~TL~~~iy~~~~~~~~~~Aaa~a~il~~~~~~~~~~~~~~~~~~ 535 (540)
T COG1178 489 PGTRTLTVYIYNLLSDGRYGDAAALALILLVVSLLLFLLLDRLGEGL 535 (540)
T ss_pred CCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99610999999980361168889999999999999999999964022
No 43
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
Probab=99.19 E-value=3.1e-07 Score=62.79 Aligned_cols=223 Identities=14% Similarity=0.075 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
Q ss_conf 99999999999999999999999999999996264246787799999999501469999999999873012103444103
Q gi|254780171|r 87 TAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLP 166 (398)
Q Consensus 87 ~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~ 166 (398)
..+...+.||+.-++.+..+.+++|+.+++.=-++ .--+++-+.-.=+=.=+|..+--..|....-
T Consensus 64 ~~f~~al~nT~~~~~~~v~~~~~lgl~lAlll~~~-~~g~~~~r~~~~lP~~~~~vv~~~iw~~l~~------------- 129 (295)
T COG1175 64 PTFWNALKNTLVFTVISVPLQLVLGLLLALLLNRK-LRGRGFFRTLFFLPWAISSVVAGLIWKWLFN------------- 129 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_conf 47999999999999999999999999999998470-4479999999999989999999999999988-------------
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 72035201000354535567004688778899999999999999864311223320455421010355899976544433
Q gi|254780171|r 167 FGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHF 246 (398)
Q Consensus 167 ~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~ 246 (398)
|. .| . +-.+.....+..
T Consensus 130 ------------~~----~G-----------~------------------------------------~n~~l~~~gl~~ 146 (295)
T COG1175 130 ------------PS----FG-----------L------------------------------------LNSLLLLLGLIP 146 (295)
T ss_pred ------------CC----CH-----------H------------------------------------HHHHHHHHCCCC
T ss_conf ------------76----35-----------8------------------------------------999999805755
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100131112682148789999999999977879999999998346367899989689989988898768999997410
Q gi|254780171|r 247 DKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPP 326 (398)
Q Consensus 247 ~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~ 326 (398)
..+.+. .-..++.+.++.-.=-...|..=++=||+|+|||...|||+==|-+++|.+|+|.+|+-.+.+.+.
T Consensus 147 ~~~wl~--------~~~~A~~~iii~~vW~~~~f~mli~lAgLq~Ip~~lyEAA~iDGA~~~q~f~~ItlP~l~p~i~~~ 218 (295)
T COG1175 147 DINWLS--------DPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFV 218 (295)
T ss_pred CCCHHC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 563413--------906999999999999998499999999995699999999958999643654541044102799999
Q ss_pred HHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4789999997549999999--9----9999999999831377--5899999999999999999999999967874304
Q gi|254780171|r 327 LTSQYLNLLKNSSLAVAVG--F----ADLVSVGGTIINQTGQ--AIEIILIWMFIYLSLSIMIALFMNRLNAKIALKE 396 (398)
Q Consensus 327 l~nq~i~l~K~SSLa~~Ig--~----~dl~~~~~~~~~~t~~--~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~e 396 (398)
+.=+.+...|.=.+.++.+ = .|... ..+.++.++ .+-.=...+++.+++...++...-++.||.+..+
T Consensus 219 ~i~~~i~~~~~Fd~i~~lT~GGP~~~T~~l~--~~~y~~af~~~~~G~asA~avil~~i~~~~~~~~~~~~~~~~~~~ 294 (295)
T COG1175 219 LILRTIFAFQVFDLIYLLTGGGPGNATTTLA--YYIYRTAFGGLDFGYAAAIAVILFLIVLILTVVQLRLLRRKERRV 294 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999736999980799962255999--999999870066648999999999999999999999987435315
No 44
>CHL00187 cysT sulfate transport protein; Provisional
Probab=99.18 E-value=6.2e-09 Score=73.16 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 99999999999999999999999999999626424678779999999950146999999999987301210344410372
Q gi|254780171|r 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFG 168 (398)
Q Consensus 89 ~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~ 168 (398)
++.-+.||+++++.+.++++++|+.++..-.-.|.--+++...-+.+---+|-.+--+-|.... .
T Consensus 51 ~~~~~~~Sl~~s~~~t~i~~~ig~~~A~~l~r~~~~gk~~~~~l~~lP~~iP~~v~a~~~~~~f-~-------------- 115 (235)
T CHL00187 51 ALSAYSLTVSMALIAALINGIFGLLIAWVLVRYNFPGKRFLDAAVDLPFALPTSVAGLTLATVY-G-------------- 115 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--------------
T ss_conf 9999999999999999999999999999999843761899999999999978999999999996-4--------------
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 03520100035453556700468877889999999999999986431122332045542101035589997654443322
Q gi|254780171|r 169 MFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDK 248 (398)
Q Consensus 169 ~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 248 (398)
..|. +..+..
T Consensus 116 ----~~G~----------------------------------------------------------~~~~l~-------- 125 (235)
T CHL00187 116 ----DNGW----------------------------------------------------------IGHILS-------- 125 (235)
T ss_pred ----CCCH----------------------------------------------------------HHHHHH--------
T ss_conf ----4661----------------------------------------------------------768999--------
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10013111268214878999999999997787999999999834636789998968998998889876899999741047
Q gi|254780171|r 249 PVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLT 328 (398)
Q Consensus 249 p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~ 328 (398)
..|..+.-.+...+++.+..+-.|+.-.++++++++|+...|||+++|-++||++|+|++|....-++=.
T Consensus 126 --------~~~~~~~~~~~giii~~~~~~~P~~~~~~~~~l~~i~~~leEAA~~lGAs~~~~f~~I~lPll~p~i~a~-- 195 (235)
T CHL00187 126 --------SLGIKIVFTKLGVLLAMIFVSLPFVVRTIQPVLQEIEKELEEAAWSLGASPWETFWKVIFPPLIPALLTG-- 195 (235)
T ss_pred --------HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEHHHHHHHHHHH--
T ss_conf --------7076512309999999999887999998999998602999999987399950411312178468999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999754999999999999999
Q gi|254780171|r 329 SQYLNLLKNSSLAVAVGFADLVSVG 353 (398)
Q Consensus 329 nq~i~l~K~SSLa~~Ig~~dl~~~~ 353 (398)
..++.+-...|.-...
T Consensus 196 ---------~~l~f~~~~~eFg~~~ 211 (235)
T CHL00187 196 ---------LALTFSRAIGEYGSIV 211 (235)
T ss_pred ---------HHHHHHHHHHHHHHHH
T ss_conf ---------9999999999987898
No 45
>PRK10913 dipeptide transporter; Provisional
Probab=99.17 E-value=9.6e-08 Score=65.90 Aligned_cols=154 Identities=13% Similarity=0.221 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 52699999999999999999999999999999999626424678779999999950146999999999987301210344
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHS 162 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~ 162 (398)
...+.-.+.|.-+|+.+++.+.++++++|+++|+.-=...-.+..+....+|++-.+|-++-.+..- ++ +
T Consensus 88 RDv~srll~G~r~Sl~ial~~~~i~~~iG~~iG~iaGy~gG~vD~~i~r~~di~~aiP~lll~l~l~-~~---~------ 157 (300)
T PRK10913 88 RDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLV-AI---F------ 157 (300)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH-HC---C------
T ss_conf 5799999999999999999999999999999999998038840788877766660688487768755-30---4------
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 41037203520100035453556700468877889999999999999986431122332045542101035589997654
Q gi|254780171|r 163 IVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKY 242 (398)
Q Consensus 163 ~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~ 242 (398)
T Consensus 158 -------------------------------------------------------------------------------- 157 (300)
T PRK10913 158 -------------------------------------------------------------------------------- 157 (300)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 4433221001311126821487899999999999778799999999983463-678999896899899888987689999
Q gi|254780171|r 243 QLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPR-GQMEAAIALGLTHRKATRLVLLPQAMR 321 (398)
Q Consensus 243 ~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpk-GQ~EAA~aLGls~~q~~r~VIlPQAlR 321 (398)
.|......+++++-.-...|.++|+-.+++-+ .=.|||+++|.|+++.+++=|+|..+.
T Consensus 158 --------------------g~~~~~~~lal~~~~w~~~aR~vR~~vl~~~~~~yV~AAr~~G~s~~rIi~~hIlPnv~~ 217 (300)
T PRK10913 158 --------------------GPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLA 217 (300)
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH
T ss_conf --------------------874689999999998999999999999998615899999984999747864334266588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9741047899999975499999999
Q gi|254780171|r 322 SIIPPLTSQYLNLLKNSSLAVAVGF 346 (398)
Q Consensus 322 ~~iP~l~nq~i~l~K~SSLa~~Ig~ 346 (398)
.++-..+-++-..+-.-|-.+.+|+
T Consensus 218 ~iiv~~~l~~~~aIl~ea~LsFLGl 242 (300)
T PRK10913 218 PLIVQASLGFSNAILDMAALGFLGM 242 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999247
No 46
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=99.17 E-value=1.2e-07 Score=65.19 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 8999999999997787999999999834636789998968998998889876899999741047899999-975499999
Q gi|254780171|r 265 EFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNL-LKNSSLAVA 343 (398)
Q Consensus 265 ~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l-~K~SSLa~~ 343 (398)
.+.+.++.-.-....|..=++-+|+++|||...|||+--|-+++|++|+|++|+--..+.--+.=+.+.- .|.-.+...
T Consensus 142 a~~~vi~~~vW~~~g~~~li~lagL~~Ip~~l~EAA~iDGA~~~q~f~~ItlPll~p~~~~~~i~~~i~~~~~~f~~i~~ 221 (280)
T PRK10561 142 AMFLVVFASVWKQISYNFLFFYAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDA 221 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998999999999985799779999997699775233123046105999999999999999965688864
Q ss_pred H--HHH-HHH-HHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 9--999-999-99999983137758--9999999999999999999999-996787
Q gi|254780171|r 344 V--GFA-DLV-SVGGTIINQTGQAI--EIILIWMFIYLSLSIMIALFMN-RLNAKI 392 (398)
Q Consensus 344 I--g~~-dl~-~~~~~~~~~t~~~~--e~~~i~~~~Yl~isl~iS~~~n-~~~rr~ 392 (398)
. |-| +-+ .....+.++.++.. -.=...+.+.++++..++.+.. +.|||+
T Consensus 222 ~t~GGP~~~t~~l~~~iy~~~f~~~~~g~asA~svil~~i~~~~~~i~~r~~~rkv 277 (280)
T PRK10561 222 ATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESKV 277 (280)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 36888852889999999999987599619999999999999999999999983211
No 47
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=99.16 E-value=4.6e-08 Score=67.83 Aligned_cols=261 Identities=16% Similarity=0.203 Sum_probs=158.9
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1213889984437542235686526999999999999999999999999999999996-264246787799999999501
Q gi|254780171|r 61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNI 139 (398)
Q Consensus 61 f~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~ 139 (398)
++|+++--..|-+.|. ..+.+-.+.+...+-||+.++..+.+++.++|+.+|+.- .-+|....+..+...-+...+
T Consensus 67 ~~wl~~~l~Gd~G~S~---~~~~pV~~~i~~~lp~Tl~L~~~a~il~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~si 143 (339)
T PRK10914 67 LHYIWGVMHGDLGISL---KSRIPVWEEFVPRFKATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSM 143 (339)
T ss_pred HHHHHHHHCCCCCCCC---CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 9999998738888734---2688369999872725899999999999999999999999852751113678889861230
Q ss_pred HH-----HHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46-----9999999999873012103444103720352010003545355670046887788999999999999998643
Q gi|254780171|r 140 PP-----LVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEK 214 (398)
Q Consensus 140 PL-----Llql~fwy~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~ 214 (398)
|- +++++| ...+..+|..-. ..+..+++ ......|+..
T Consensus 144 P~F~lallli~if--~~~l~~~P~~G~---~~~~~~~~-------~~~p~~g~~~------------------------- 186 (339)
T PRK10914 144 PIFWWGMMLIMLV--SVHWNLTPVSGR---VSDMVFLD-------DSNPLTGFML------------------------- 186 (339)
T ss_pred HHHHHHHHHHHHH--HHHHCCCCCCCC---CCCCCCCC-------CCCCCCCCCC-------------------------
T ss_conf 6999999999999--999574777676---76531246-------6666554100-------------------------
Q ss_pred HCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 112233204554210103558999765444332210013111268-21-48789999999999977879999999998-3
Q gi|254780171|r 215 TGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGG-ST-VSPEFMSLYIALSCYTAAFIAEIVRSGLI-A 291 (398)
Q Consensus 215 tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG-~~-l~p~f~a~~iaL~l~taAyiaEivR~gI~-s 291 (398)
+-...++.+-.+ ... .+ .-| .+++++...|+.+-.+|+.+. .
T Consensus 187 --------------------~~~~~~g~~~~~----------~~~l~hliLP-----~l~L~l~~~a~~~r~~R~~~~~~ 231 (339)
T PRK10914 187 --------------------IDTAIWGEDGNF----------IDAVAHMILP-----AIVLGTIPLAVIVRMTRSSMLEV 231 (339)
T ss_pred --------------------CCHHHHCCCHHH----------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------111420451137----------8899999999-----99999999999999999999999
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHCCCCHHHH-HH
Q ss_conf 4636789998968998998889876899999741047899999975499999-999999999-99998313775899-99
Q gi|254780171|r 292 VPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVA-VGFADLVSV-GGTIINQTGQAIEI-IL 368 (398)
Q Consensus 292 VpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~-Ig~~dl~~~-~~~~~~~t~~~~e~-~~ 368 (398)
..+.-.+.|+|-|+++++.+++-+++-|+--+++-++-++-.++-+|-+.-. =++|-+=.. .+.+.++.+-.+.. ..
T Consensus 232 l~~dyV~~ArakGl~~~~i~~~h~lrnal~P~it~~g~~~~~ll~GsvivE~vF~~pGiG~l~~~Ai~~rD~pvi~g~~l 311 (339)
T PRK10914 232 LGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVL 311 (339)
T ss_pred HHHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 83499999998594933140498398609989999999999999769998698677576999999998358899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999967874304
Q gi|254780171|r 369 IWMFIYLSLSIMIALFMNRLNAKIALKE 396 (398)
Q Consensus 369 i~~~~Yl~isl~iS~~~n~~~rr~~l~e 396 (398)
+.++.++..|+..-.+..+++-|++.|+
T Consensus 312 ~~~~~~i~~nli~Dil~~~lDPRiR~kr 339 (339)
T PRK10914 312 LVATMIILVNLLVDLLYGVVNPRIRHKK 339 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999999999986284047889
No 48
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=99.09 E-value=6.1e-07 Score=60.99 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 65269999999999999999999999999999999962642467877999999995014699999999998730121034
Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDH 161 (398)
Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~ 161 (398)
....+.-++.|.-+|+.+++.+.++++++|+++|+.--.....+.++....+|++-.+|-++-.++.-..+
T Consensus 55 GrDv~srll~G~r~sl~i~l~~~~~~~~iG~~lG~~ag~~gg~~d~~~~~~~d~~~~iP~lll~i~l~~~~--------- 125 (272)
T PRK10417 55 GRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILSFFMVGVL--------- 125 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC---------
T ss_conf 51999999999999999999999999999999999999718761247777788986286287788888644---------
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 44103720352010003545355670046887788999999999999998643112233204554210103558999765
Q gi|254780171|r 162 SIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALK 241 (398)
Q Consensus 162 ~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~ 241 (398)
T Consensus 126 -------------------------------------------------------------------------------- 125 (272)
T PRK10417 126 -------------------------------------------------------------------------------- 125 (272)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44433221001311126821487899999999999778799999999983463-67899989689989988898768999
Q gi|254780171|r 242 YQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPR-GQMEAAIALGLTHRKATRLVLLPQAM 320 (398)
Q Consensus 242 ~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpk-GQ~EAA~aLGls~~q~~r~VIlPQAl 320 (398)
.+.....++++++-.-...+.++|+-.+++.+ .=.|||+++|-++++.+++-|+|..+
T Consensus 126 ---------------------g~~~~~~il~l~l~~w~~~ar~iR~~~l~~~~~~yV~AAr~~G~s~~~I~~rhilPni~ 184 (272)
T PRK10417 126 ---------------------GTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLLGAVI 184 (272)
T ss_pred ---------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHCHHHHH
T ss_conf ---------------------89725899999998899999999999999998999999998395877832201767637
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99741047899999975499999999
Q gi|254780171|r 321 RSIIPPLTSQYLNLLKNSSLAVAVGF 346 (398)
Q Consensus 321 R~~iP~l~nq~i~l~K~SSLa~~Ig~ 346 (398)
..++.-.+.+.-..+-.-|-.+.+|+
T Consensus 185 ~~i~v~~~~~~~~~Il~~a~LsFLGl 210 (272)
T PRK10417 185 PSLLVLATLDIGHMMLHVAGLSFLGL 210 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999999999047
No 49
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=99.06 E-value=5.4e-08 Score=67.43 Aligned_cols=222 Identities=15% Similarity=0.129 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4678779999999950146999999999987301210344-410372035201000354535567004688778899999
Q gi|254780171|r 123 KLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHS-IVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLS 201 (398)
Q Consensus 123 ~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~-~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila 201 (398)
|.+...-.+.-..+-.+|-.+-+.+.- .+-=.+-..+-+ ....+..++-.-|+.-+.- +.....+.+..++++++
T Consensus 88 ~~i~~~l~~~~~~L~~~P~~~~i~~~~-~law~~~g~~la~~t~~~l~~I~~~G~W~~aM---~TLalvlvav~~~~iiG 163 (354)
T PRK10952 88 VPVDYILNGFQQLLLGMPAPVAIIVFA-LIAWQISGVGMGVATLISLIAIGAIGAWSQAM---VTLALVLTALLFCIVIG 163 (354)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 999999999999980298899999999-99999804799999999999999966329999---99999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999986431122332045542101035589997654443322100131112682148789999999999977879
Q gi|254780171|r 202 LFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFI 281 (398)
Q Consensus 202 ~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyi 281 (398)
+.++.|..+..... .......-.....|..+++ +|...-|+ +.- .+++++..+|.-.-+
T Consensus 164 iplGI~~ars~r~~----~il~PiLD~mQT~P~FVYL---------iP~vmlFG----iG~----vpaviAtviyAlpP~ 222 (354)
T PRK10952 164 LPLGIWLARSPRAA----KIIRPLLDAMQTTPAFVYL---------VPIVMLFG----IGN----VPGVVVTIIFALPPI 222 (354)
T ss_pred HHHHHHHHCCHHHH----HHHHHHHHHHHCCHHHHHH---------HHHHHHHC----CCC----HHHHHHHHHHHCCHH
T ss_conf 99999997469999----9999999873113079999---------99999927----971----459999999973589
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHC
Q ss_conf 999999998346367899989689989988898768999997410478999999754999999999999999--999831
Q gi|254780171|r 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVG--GTIINQ 359 (398)
Q Consensus 282 aEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~--~~~~~~ 359 (398)
.....-||..||+.-.|||++.|+|++|.+++|-+|-|++.++-.+..-.+.-+--.-+++.||-.+|=... .....+
T Consensus 223 iR~T~lGir~Vp~~viEAa~~~G~T~~Q~L~kVeLPlA~P~ImaGvNQtimlaLsMvVIAa~IGagGLG~~Vl~gi~~~d 302 (354)
T PRK10952 223 IRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLD 302 (354)
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 99999999608888999999849998889898336024999999999999999999999999578866189999986224
Q ss_pred CCCHHHHHHH
Q ss_conf 3775899999
Q gi|254780171|r 360 TGQAIEIILI 369 (398)
Q Consensus 360 t~~~~e~~~i 369 (398)
.|+.+|.=+.
T Consensus 303 ~G~gl~aGl~ 312 (354)
T PRK10952 303 MGLATVGGVG 312 (354)
T ss_pred HHHHHHHHHH
T ss_conf 3689999999
No 50
>PRK10998 malG maltose transporter permease; Provisional
Probab=99.05 E-value=1.4e-06 Score=58.81 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999998346367899989689989988898768999997410478999999754
Q gi|254780171|r 280 FIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNS 338 (398)
Q Consensus 280 yiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~S 338 (398)
+.-=+.|+.++++||...|||+--|-+++|++++|++|-+-..+.-...=.+++-..|=
T Consensus 172 ~~i~ll~~ff~~iP~el~EAA~iDGas~~~~f~~IilPl~~P~i~t~~i~~fi~~WNef 230 (296)
T PRK10998 172 LHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEV 230 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999986297989999998599777797876786259999999999999999999
No 51
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=99.05 E-value=1.1e-07 Score=65.62 Aligned_cols=234 Identities=19% Similarity=0.225 Sum_probs=153.8
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1213889984437542235686526999999999999999999999999999999996-264246787799999999501
Q gi|254780171|r 61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNI 139 (398)
Q Consensus 61 f~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~ 139 (398)
+.|+++-...|-++|.. .++.+-.+.....+-+|+.+++.+.+++.++|+.+|+.- ..+|....+..+...-+...+
T Consensus 64 ~~wl~~~l~GD~G~S~~--~~~~~V~~~i~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~~~~~~~si 141 (306)
T PRK09471 64 FSYLKQLAHGDFGPSFK--YKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVI 141 (306)
T ss_pred HHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999986898877672--6898889999988899999999999999999999999999834751619999999999998
Q ss_pred HHHHHH--HHHHHHH-HHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 469999--9999998-7301210344410372035201000354535567004688778899999999999999864311
Q gi|254780171|r 140 PPLVVI--FFLYKSV-LSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTG 216 (398)
Q Consensus 140 PLLlql--~fwy~~v-~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg 216 (398)
|--+-= +.+.|++ +..+|. -.+.++.
T Consensus 142 P~F~la~lli~iF~~~l~~~P~----------------------~g~~~~~----------------------------- 170 (306)
T PRK09471 142 PSFVVAPLLVMIFAIILHWLPG----------------------GGWNGGA----------------------------- 170 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCCCC----------------------CCCCCCH-----------------------------
T ss_conf 9999999998899972176377----------------------8887520-----------------------------
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHH
Q ss_conf 2233204554210103558999765444332210013111268214878999999999997787999999999834-636
Q gi|254780171|r 217 KALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAV-PRG 295 (398)
Q Consensus 217 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sV-pkG 295 (398)
. .+. .-| ++++++...|+.+..+|+....+ .+.
T Consensus 171 ------------------~--------~~l---------------iLP-----~~~l~l~~~~~~~r~~R~~~~~~l~~d 204 (306)
T PRK09471 171 ------------------L--------KFM---------------ILP-----MVALSLAYIASIARITRGSMIEVLHSN 204 (306)
T ss_pred ------------------H--------HHH---------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------7--------887---------------536-----999999999999999999999998779
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHCCCCHHHH-HHHHHH
Q ss_conf 78999896899899888987689999974104789999997549999-9999999999-99998313775899-999999
Q gi|254780171|r 296 QMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAV-AVGFADLVSV-GGTIINQTGQAIEI-ILIWMF 372 (398)
Q Consensus 296 Q~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~-~Ig~~dl~~~-~~~~~~~t~~~~e~-~~i~~~ 372 (398)
-.+.|+|-|+++++.+++-+++-|+--+++-++-++-.++-+|-+.- .=++|-+=.. .+.+.|+.+-.+.. ..+.++
T Consensus 205 yV~~ArakGl~~~~i~~rh~lrnal~P~it~~~~~~~~ll~GsvivE~iF~~PGiG~l~~~Ai~~~D~p~v~g~~l~~a~ 284 (306)
T PRK09471 205 FIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGA 284 (306)
T ss_pred HHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999986998400730012984299999999999999845871210986476759999999980498999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999967874
Q gi|254780171|r 373 IYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 373 ~Yl~isl~iS~~~n~~~rr~~ 393 (398)
.+.+.++..-.+..+++-|++
T Consensus 285 ~~i~~nll~Dil~~~lDPRiR 305 (306)
T PRK09471 285 LTILFNAIVDVLYAVIDPKIR 305 (306)
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999997297558
No 52
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.03 E-value=7.5e-08 Score=66.55 Aligned_cols=189 Identities=20% Similarity=0.283 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999972887781213889984437542235686526999999999999999999999
Q gi|254780171|r 27 ISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIP 106 (398)
Q Consensus 27 ~~~Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givl 106 (398)
.+.-.+.++.++..+++...|...+++.+ +.+|+.+....+=.|+ |. .--..--++||+.+.+.++++
T Consensus 9 ~~~~~~~~~~L~~il~~i~~~G~~~ln~~----n~~fft~~~~~~~~~~-------~~-~GGi~~AivGT~~~~~~~~~i 76 (302)
T TIGR00974 9 LLSALLALLPLIWILWYILIKGLPALNNN----NLEFFTSSPTPTGTEG-------DG-EGGIGPAIVGTLLLILLAIVI 76 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHEECC----CCCEEEECCCCCCCCC-------CC-CCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999996230002115----7600453577777888-------88-753367799999999999999
Q ss_pred HHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 99999999999--6264246787799999999501469999999999873012103444103720352010003545355
Q gi|254780171|r 107 ATIIGTLVGAG--RLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMD 184 (398)
Q Consensus 107 atiLG~~iGi~--RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~ 184 (398)
|.-+|+..||= .-+++-...++-+.-+|..=.+|=.+-=.|-|..+.... ++++ .
T Consensus 77 a~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~------------------~i~l-----~ 133 (302)
T TIGR00974 77 AVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTL------------------GIYL-----G 133 (302)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH-----H
T ss_conf 9999999888755306789400568788887521169999999999999776------------------8645-----2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 67004688778899999999999999864311223320455421010355899976544433221001311126821487
Q gi|254780171|r 185 TNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSP 264 (398)
Q Consensus 185 ~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p 264 (398)
.++
T Consensus 134 ~~~----------------------------------------------------------------------------- 136 (302)
T TIGR00974 134 GGF----------------------------------------------------------------------------- 136 (302)
T ss_pred HHH-----------------------------------------------------------------------------
T ss_conf 206-----------------------------------------------------------------------------
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999-999999778799999999983463678999896899899888987689999974104
Q gi|254780171|r 265 EFMSLY-IALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398)
Q Consensus 265 ~f~a~~-iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398)
.-.|+- ++|++=-==.+.-.=.-++++||++++|||.|||-+||||-++|++|-|++=++=..
T Consensus 137 S~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~ 200 (302)
T TIGR00974 137 SALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGI 200 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHH
T ss_conf 7787999999999999999998999972478888999972600211332244131036899999
No 53
>PRK10352 nickel transporter permease NikB; Provisional
Probab=99.02 E-value=1.1e-07 Score=65.42 Aligned_cols=234 Identities=15% Similarity=0.225 Sum_probs=152.6
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 213889984437542235686526999999999999999999999999999999996-2642467877999999995014
Q gi|254780171|r 62 GFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNIP 140 (398)
Q Consensus 62 ~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~P 140 (398)
+|+++-...|-+.| |..+.+-.+....-+-||+.+++.+.+++.++|+.+|+.- ..+|....+..+...-+...+|
T Consensus 70 ~wl~~~l~GD~G~S---~~~~~pV~~~I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~~~~~D~~~~~~~~~~~siP 146 (314)
T PRK10352 70 TWLWKALHLDFGIS---FATQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMP 146 (314)
T ss_pred HHHHHHHEECCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999922457876---636886089888763788999999999999998599999872079721013105899878731
Q ss_pred HHHH--HHHHHHHHH-HHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6999--999999987-3012103444103720352010003545355670046887788999999999999998643112
Q gi|254780171|r 141 PLVV--IFFLYKSVL-SVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGK 217 (398)
Q Consensus 141 LLlq--l~fwy~~v~-~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~ 217 (398)
--+- ++.+++++. ..+|.. +.+
T Consensus 147 ~F~la~lli~~fa~~l~~~P~~------------------------g~~------------------------------- 171 (314)
T PRK10352 147 NFWLAFLLVMAFSVYLQWLPAM------------------------GYG------------------------------- 171 (314)
T ss_pred HHHHHHHHHHHHHHHCCCCCCC------------------------CCC-------------------------------
T ss_conf 9999999999999964767876------------------------778-------------------------------
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHH
Q ss_conf 233204554210103558999765444332210013111268214878999999999997787999999999834-6367
Q gi|254780171|r 218 ALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAV-PRGQ 296 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sV-pkGQ 296 (398)
++. .. .-| .+++++...|+.+-.+|+....+ .+.-
T Consensus 172 -------------------------------------~~~-~l-iLP-----~l~l~l~~~a~~~r~~R~~~~e~l~~dy 207 (314)
T PRK10352 172 -------------------------------------GWQ-HI-ILP-----AVSIAFMSLAINARLLRASMLDVAGQRH 207 (314)
T ss_pred -------------------------------------CHH-HH-HCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------------------------------------336-54-111-----9999999999999999999999863299
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHCCCCHHHH-HHHHHHH
Q ss_conf 8999896899899888987689999974104789999997549999-9999999999-99998313775899-9999999
Q gi|254780171|r 297 MEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAV-AVGFADLVSV-GGTIINQTGQAIEI-ILIWMFI 373 (398)
Q Consensus 297 ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~-~Ig~~dl~~~-~~~~~~~t~~~~e~-~~i~~~~ 373 (398)
.+.|+|-|+++++.+++-++|.|+--+++-++-++-.++-+|-+.= +=++|-+=.. .+.+.++.+-.+.. ..+.++.
T Consensus 208 v~~ArakGls~~~i~~rh~lrnal~P~it~~~~~~~~ll~GavivE~iF~~pGlG~ll~~Ai~~rD~p~v~g~~l~~~~~ 287 (314)
T PRK10352 208 VTWARLRGLSDRQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVV 287 (314)
T ss_pred HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999869893136086528742988999999999998477610018754767599999999813889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999678743047
Q gi|254780171|r 374 YLSLSIMIALFMNRLNAKIALKEK 397 (398)
Q Consensus 374 Yl~isl~iS~~~n~~~rr~~l~er 397 (398)
+...|+..-.+..+++-|++..|.
T Consensus 288 ~v~~nli~Dily~~lDPRiR~~~g 311 (314)
T PRK10352 288 FVVCNLIVDLLNAALDPRIRRHEG 311 (314)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999999999964863157899
No 54
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.1e-09 Score=72.13 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=90.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82148789999999999977879999999998346367899989689989988898768999997410478999999754
Q gi|254780171|r 259 GSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNS 338 (398)
Q Consensus 259 G~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~S 338 (398)
|+...-.....++|+..-+..|.-..+|.+.+++|+.+-|||++||.+++|++++|++|-+.+.+ ++..
T Consensus 132 gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sLGas~~~tf~~V~lP~l~pal-----------l~G~ 200 (274)
T COG0555 132 GIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPAL-----------LAGF 200 (274)
T ss_pred CCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEEHHHCHHHH-----------HHHH
T ss_conf 75676467899999999703368998899998556889999986489855111424464133899-----------9999
Q ss_pred HHHHHHHHHHH----------------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999----------------99999998313775899999999999999999999999967874304
Q gi|254780171|r 339 SLAVAVGFADL----------------VSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKE 396 (398)
Q Consensus 339 SLa~~Ig~~dl----------------~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~e 396 (398)
.|+.+=+..|. ....--..-+++ -+|.=....++-+.+|+.+-...|+.+.|..-.|
T Consensus 201 ~LsfaR~igEfGavl~iAgn~p~~t~~~pl~Iy~~~~~~-d~~~A~ais~vll~iS~~~l~~~r~~~~~~~r~~ 273 (274)
T COG0555 201 ILSFARSIGEFGAVLIIAGNTPYKTETLPLLIYTRLESY-DLEAAAAISVVLLLISFILLLVIRLLQSRARRRE 273 (274)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999824546499981477787730389999999837-9357999999999999999999999987642057
No 55
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.91 E-value=4.8e-06 Score=55.56 Aligned_cols=201 Identities=19% Similarity=0.238 Sum_probs=139.3
Q ss_pred CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68652699----99999999999999999999999999999962-64246787799999999501469999999999873
Q gi|254780171|r 80 TSDSSYAT----AILVGFVNTFWLAFSGMIPATIIGTLVGAGRL-SANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLS 154 (398)
Q Consensus 80 ~~~~sy~~----a~~vGl~NTl~va~~givlatiLG~~iGi~Rl-S~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~ 154 (398)
-++|.++| -.+.|.-+++.+++.+..+++++|+++|+.-= .+-| +-++-...+|++=.+|-++-.+..-..+
T Consensus 68 lGTD~~GRDi~srli~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~-vD~ilmri~di~ls~P~lll~i~l~~~l-- 144 (289)
T COG1173 68 LGTDNLGRDILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGW-VDRVLMRITDIFLAFPSLLLAILLVAIL-- 144 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHH--
T ss_conf 6789743589999999999999999999999999999999999880761-9999999999999765999999999997--
Q ss_pred HCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH
Q ss_conf 01210344410372035201000354535567004688778899999999999999864311223320455421010355
Q gi|254780171|r 155 VLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPT 234 (398)
Q Consensus 155 ~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~ 234 (398)
T Consensus 145 -------------------------------------------------------------------------------- 144 (289)
T COG1173 145 -------------------------------------------------------------------------------- 144 (289)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCHHHHHHH
Q ss_conf 899976544433221001311126821487899999999999778799999999983463-6789998968998998889
Q gi|254780171|r 235 LVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPR-GQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 235 l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpk-GQ~EAA~aLGls~~q~~r~ 313 (398)
| |.+.-.++++++-+-+..|-++||-..++.+ +-.|||+++|.++++.+++
T Consensus 145 ------------------------g----~~~~~iiial~i~~W~~~AR~vR~~vl~~k~~eyV~AAr~~G~~~~~Ii~r 196 (289)
T COG1173 145 ------------------------G----PGLLNLILALALVGWPGYARIVRGQVLSLREREYVEAARALGASTLRIIFR 196 (289)
T ss_pred ------------------------C----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf ------------------------7----248989999999943999999999999987768999999849992012498
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8768999997410478999999754999999999---------9999999998313775899999999999999999999
Q gi|254780171|r 314 VLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFA---------DLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALF 384 (398)
Q Consensus 314 VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~---------dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~ 384 (398)
=|+|+.+-.++-..+.+.-..+-.-|-.+-+|+- .+.+.++. ...++..-..+. -++.-..+.+....+
T Consensus 197 hIlPn~~~~iiv~~~l~~~~aIl~ea~LSFLGLG~~pp~pswG~ml~~~~~-~~~~~~~w~~l~-Pgl~i~l~vl~fnll 274 (289)
T COG1173 197 HILPNVLPPLIVLATLDIGGAILAEAGLSFLGLGVQPPTPSWGTMLAEGRN-YLLTGAWWLVLF-PGLAILLTVLAFNLL 274 (289)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHCCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 862302899999999999999999999999068899899989999999999-887048599999-899999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999967874
Q gi|254780171|r 385 MNRLNAKIA 393 (398)
Q Consensus 385 ~n~~~rr~~ 393 (398)
-+.++++..
T Consensus 275 gdgLrd~~d 283 (289)
T COG1173 275 GDGLRDALD 283 (289)
T ss_pred HHHHHHHHC
T ss_conf 988998748
No 56
>PRK10999 malF maltose transporter membrane protein; Provisional
Probab=98.86 E-value=2.9e-06 Score=56.83 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 65269999999999999999999999999999999962642467877999999995014699999999998730121034
Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDH 161 (398)
Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~ 161 (398)
++.+...|+.=+..|+.-++++.++..++|+++++.=-.++---|++-+.-+=+==-+|-.+-...|-...-...-...+
T Consensus 276 d~~~~~pf~~v~~WT~~fa~~sv~~~~~lGl~lAllln~~~~rgr~~~R~l~ilP~avP~~is~lvw~~mfn~~~G~iN~ 355 (520)
T PRK10999 276 DEGIQKPFIAIFVWTVVFSLLTVVFTVAVGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINM 355 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 82131135666766789999999999999999999828756660768999999998999999999999842888657999
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 44103720352010003545355670046887788999999999999998643112233204554210103558999765
Q gi|254780171|r 162 SIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALK 241 (398)
Q Consensus 162 ~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~ 241 (398)
-... --|+..|
T Consensus 356 ~L~~-------l~g~~~~-------------------------------------------------------------- 366 (520)
T PRK10999 356 MLSA-------LFGIKPA-------------------------------------------------------------- 366 (520)
T ss_pred HHHH-------CCCCCCC--------------------------------------------------------------
T ss_conf 9998-------0599986--------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 44433221001311126821487--8999999999997787999999999834636789998968998998889876899
Q gi|254780171|r 242 YQLHFDKPVLGQFNFIGGSTVSP--EFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQA 319 (398)
Q Consensus 242 ~~~~~~~p~l~~f~~~gG~~l~p--~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQA 319 (398)
+--.| +..+.++.=+=-.-.|+.=+.-||+|+||+...|||+-=|=++||.+|+|.+|+-
T Consensus 367 ------------------Wl~dp~~A~~~viiv~~W~g~p~~~i~~la~Lq~IP~~lyEAA~iDGA~~~~~f~~ITlPll 428 (520)
T PRK10999 367 ------------------WFSDPTTARTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLL 428 (520)
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEECCCC
T ss_conf ------------------34796999999999999951729999999987159989999998529656504514672023
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997410478999999754999999
Q gi|254780171|r 320 MRSIIPPLTSQYLNLLKNSSLAVAV 344 (398)
Q Consensus 320 lR~~iP~l~nq~i~l~K~SSLa~~I 344 (398)
++.+.|-+...++..++|=.+.+..
T Consensus 429 ~~~~~~lli~~~i~~fn~F~~I~ll 453 (520)
T PRK10999 429 IKPLTPLMIASFAFNFNNFVLIQLL 453 (520)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 5889999999999996252577643
No 57
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.85 E-value=7.8e-06 Score=54.25 Aligned_cols=238 Identities=21% Similarity=0.262 Sum_probs=147.1
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 213889984437542235686526999999999999999999999999999999996-2642467877999999995014
Q gi|254780171|r 62 GFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNIP 140 (398)
Q Consensus 62 ~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~P 140 (398)
.|+.+-...|-+.+ |...++-.+....-+-||+.+++.+.+++.++|..+|+.- .-+|....+..+..--+...+|
T Consensus 67 ~~l~~~~~gdfG~S---~~~~~pV~~~I~~~lp~Tl~L~~~a~iis~~lgi~LG~~aa~~~~~~~D~~~~~~~~~~~siP 143 (317)
T COG0601 67 NYLKNLLHGDFGTS---FVYKRPVADLILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIP 143 (317)
T ss_pred HHHHHHHCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999848688733---567996899999884999999999999999999999999994489759999999999999602
Q ss_pred HHHHH--HHHHHHH-HHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 69999--9999998-73012103444103720352010003545355670046887788999999999999998643112
Q gi|254780171|r 141 PLVVI--FFLYKSV-LSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGK 217 (398)
Q Consensus 141 LLlql--~fwy~~v-~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~ 217 (398)
--+.- +...+++ +..+|..-.. - .+.+.
T Consensus 144 ~F~~~~lli~~f~~~l~~~P~~g~~---------------~------~~~~~---------------------------- 174 (317)
T COG0601 144 SFWLGLLLILLFSVKLGWLPVGGRG---------------S------AGSWD---------------------------- 174 (317)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC---------------C------CCCHH----------------------------
T ss_conf 9999999999999996768988878---------------8------65156----------------------------
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHH
Q ss_conf 23320455421010355899976544433221001311126821487899999999999778799999999983-46367
Q gi|254780171|r 218 ALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIA-VPRGQ 296 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~s-VpkGQ 296 (398)
... .... .+.-=.++|++...|..+..+|+.+.. ..+.-
T Consensus 175 ----------------~~~----~~~~--------------------h~iLP~~~L~~~~~a~~~r~~R~~~~e~l~~dy 214 (317)
T COG0601 175 ----------------SFL----DALK--------------------HLILPALTLGLVSLAGIARLTRSSMLEVLNQDY 214 (317)
T ss_pred ----------------HHH----HHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------799----9999--------------------999999999999999999999999999986689
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHCCCCHHHH-HH
Q ss_conf 8999896899899888987689999974104789999997549999999999999---9----99998313775899-99
Q gi|254780171|r 297 MEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVS---V----GGTIINQTGQAIEI-IL 368 (398)
Q Consensus 297 ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~---~----~~~~~~~t~~~~e~-~~ 368 (398)
.++|||-|+++++.+++- |+|.++.|+.+ .+.+.=.+.+..++=+..+++ . .+.+.++.+-.+.. ..
T Consensus 215 V~~AraKGl~~~~i~~kH----~lrNa~iP~vt-~~~~~~~~ll~GavivE~iF~~pGiG~l~~~Ai~~~D~p~i~g~~~ 289 (317)
T COG0601 215 VRTARAKGLSERRILFKH----ALRNALLPVIT-VLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVL 289 (317)
T ss_pred HHHHHHCCCCCCEEHHHH----HHHHHHHHHHH-HHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999998799925103986----33764888999-9999999998468787354087784999999998248499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999967874304
Q gi|254780171|r 369 IWMFIYLSLSIMIALFMNRLNAKIALKE 396 (398)
Q Consensus 369 i~~~~Yl~isl~iS~~~n~~~rr~~l~e 396 (398)
+.+++++..++..-.+...++-|++.-|
T Consensus 290 ~~~~~~i~~nli~Dily~~lDPRir~~~ 317 (317)
T COG0601 290 VIALLVILGNLLVDILYALLDPRIRLGE 317 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999999999996497566888
No 58
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterised in Escherichia coli , Staphylococcus carnosus Rhodobacter capsulatus and Azotobacter vinlandii . Molybdate is chemically similar to sulphate, thiosulphate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulphate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulphate permease proteins and not included in this model.; GO: 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0016021 integral to membrane.
Probab=98.83 E-value=1.6e-07 Score=64.52 Aligned_cols=116 Identities=24% Similarity=0.344 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999977879999999998346367899989689989988898768999997410478999999754999999
Q gi|254780171|r 265 EFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAV 344 (398)
Q Consensus 265 ~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~I 344 (398)
.|.++++|-.+++-=|+-.-.|++..++|+.-.|+|+.||.|+++++++|+||-+.+=+ +-..-|+.+=
T Consensus 81 t~~g~vlAs~~VSfPl~v~~~~~a~~~~~~~~~~~ArtLGaS~~~~f~~v~LPL~~pG~-----------l~G~vL~FAR 149 (212)
T TIGR02141 81 TFAGAVLASVVVSFPLMVRTIRGAFEAVDPDLEEAARTLGASELRVFLKVTLPLAFPGL-----------LAGAVLSFAR 149 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_conf 69999999999997768999999998627128999988278789989999857328999-----------9999999997
Q ss_pred HHHHHHH---HHHHHHHCC-------CCHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999---999998313-------775899---9---999999999999999999999678
Q gi|254780171|r 345 GFADLVS---VGGTIINQT-------GQAIEI---I---LIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 345 g~~dl~~---~~~~~~~~t-------~~~~e~---~---~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
++-|.=. .|+.+.++| |.++|. + .....+-+++|++.=..++++|||
T Consensus 150 ~LGEFGAtlm~aGNIpGkT~T~plaIY~~v~~lg~~~~A~~l~l~ll~~s~~~ll~~~~~~~R 212 (212)
T TIGR02141 150 ALGEFGATLMFAGNIPGKTRTIPLAIYDAVESLGDYEAAHLLSLVLLALSLIVLLLVELLNKR 212 (212)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 502113443100469796301767788677057886789999999999999999999875059
No 59
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=98.75 E-value=1.7e-05 Score=52.24 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
..|.++|++-..--|+-=-+-++++.+|+.-.|||+.||=+|+|++|+|++|+++.-+.-...=-|+--+-+=..-..+|
T Consensus 153 ~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVFi~alG~fi~P~lLG 232 (287)
T COG1176 153 ETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPALGSFVTPALLG 232 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 33676899998659999999999983997899999875997654764203217718999999999897758899889856
Q ss_pred HHHHHHHHHHHHHCCCCH
Q ss_conf 999999999998313775
Q gi|254780171|r 346 FADLVSVGGTIINQTGQA 363 (398)
Q Consensus 346 ~~dl~~~~~~~~~~t~~~ 363 (398)
=++-...++.+.+|..+.
T Consensus 233 G~~~~~ig~lI~~q~~~~ 250 (287)
T COG1176 233 GPKVLMIGNLIYQQFLSA 250 (287)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 975253999999998520
No 60
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional
Probab=98.44 E-value=0.00012 Score=46.94 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999983463678999896899899888987689999974104789999997549
Q gi|254780171|r 280 FIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSS 339 (398)
Q Consensus 280 yiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SS 339 (398)
+..=++|+-++++||.-.|||+==|-+++|++++|++|.+...+.--..=.++.-.-|=-
T Consensus 157 ~~i~l~~~f~~~IP~el~EAA~iDGas~~~~f~~IilPl~kP~i~tv~i~~fi~~WNef~ 216 (281)
T PRK10973 157 TATFLFRQFFMTLPDELVEAARIDGAGPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYL 216 (281)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999976888899999981986777815410026599999999999999999798
No 61
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents a clade of ABC porter genes with relatively weak homology compared to its neighbour clades, the molybdate (IPR006229 from INTERPRO) and sulphate (IPR005667 from INTERPRO) porters. Neighbour-Joining, PAM-distance phylogenetic trees support the separation of these clades in this way. Included in this group are the NifC genes of Clostridium pasteurianum and Pasteurella multocida, which are involved in the biosynthesis and/or control of nitrogenase. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within this group are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulphate porter. There is presently no experimental evidence to support annotations with this degree of specificity.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=98.40 E-value=2.4e-06 Score=57.36 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=68.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68214878999999999997787999999999834636789998968998998889876899999741047899999975
Q gi|254780171|r 258 GGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKN 337 (398)
Q Consensus 258 gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~ 337 (398)
.|+.+.-.=.+.++|-+.-+++|.--..|++.++||++=.||||++|.++.|++|+|-+|-+.+-++-.
T Consensus 96 aGi~~~Fs~~gvvlAQ~FVa~p~~vr~~r~~f~~v~~~ye~va~~lG~g~~~t~~~v~lPl~~~~ll~G----------- 164 (226)
T TIGR01581 96 AGIQVIFSTLGVVLAQTFVASPYLVRVARSTFESVDPDYEDVARSLGAGPLETFRKVTLPLARPGLLAG----------- 164 (226)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-----------
T ss_conf 441678888999999999999999999997673038348999988078722678887577533688887-----------
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 49999999999999
Q gi|254780171|r 338 SSLAVAVGFADLVS 351 (398)
Q Consensus 338 SSLa~~Ig~~dl~~ 351 (398)
+=|+.+=..-|.=.
T Consensus 165 ~vLafaRalGEFGA 178 (226)
T TIGR01581 165 LVLAFARALGEFGA 178 (226)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999997565678
No 62
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. These proteins represent a family of phosphonate uptake transporters., probably responsible for the transport of phosphonate across the inner membrane. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0005887 integral to plasma membrane.
Probab=98.36 E-value=2.7e-05 Score=50.95 Aligned_cols=171 Identities=22% Similarity=0.300 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
Q ss_conf 99999999999999999999999999996---264246787799999999501469999999999873012103444103
Q gi|254780171|r 90 LVGFVNTFWLAFSGMIPATIIGTLVGAGR---LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLP 166 (398)
Q Consensus 90 ~vGl~NTl~va~~givlatiLG~~iGi~R---lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~ 166 (398)
+.-++.|+.+|+.|-++|-++|+.+|.+- |-+||.+++..+=..|..|-+|=.+-=.|+ .+...|
T Consensus 2 ~~~M~~T~~IA~~~T~~~V~l~~~l~ll~A~NL~Pn~W~~~~VRRLM~~~RA~~E~V~A~lF--~~~~~L---------- 69 (192)
T TIGR01097 2 LTKMLVTLNIAVFSTILAVVLSIILGLLAAKNLVPNPWVRQIVRRLMDILRAINEVVIAGLF--LVILSL---------- 69 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHC----------
T ss_conf 56899999999999999999999999986752588842104789999999776799999999--999950----------
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 72035201000354535567004688778899999999999999864311223320455421010355899976544433
Q gi|254780171|r 167 FGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHF 246 (398)
Q Consensus 167 ~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~ 246 (398)
T Consensus 70 -------------------------------------------------------------------------------- 69 (192)
T TIGR01097 70 -------------------------------------------------------------------------------- 69 (192)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100131112682148789999999999977879999999998346367899989689989988898768999997410
Q gi|254780171|r 247 DKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPP 326 (398)
Q Consensus 247 ~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~ 326 (398)
-| .+++.|++++|-.-.+..+--..++++.|=.|.=||.|=++-....+=++||.+ |.
T Consensus 70 ----------------GP--~~~~~A~~IHT~G~L~KLl~E~VE~~~~~P~EG~RA~GAN~~E~~~yG~~PQVl----P~ 127 (192)
T TIGR01097 70 ----------------GP--IAAVLALFIHTIGVLSKLLFEVVEAIDMKPVEGLRAVGANKLERVLYGVLPQVL----PL 127 (192)
T ss_pred ----------------CC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHH----HH
T ss_conf ----------------51--899999999999899999999986158989766523330378899960102676----88
Q ss_pred HHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 478999----999754999999999---9999999998313775899999999999999
Q gi|254780171|r 327 LTSQYL----NLLKNSSLAVAVGFA---DLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378 (398)
Q Consensus 327 l~nq~i----~l~K~SSLa~~Ig~~---dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~is 378 (398)
++|.++ ..++.|+...++|-- |+...+ . ..||.-....++.++.-+++
T Consensus 128 l~SY~L~RlE~NVR~~T~~G~VG~GGIG~~L~~~---I-~~~~~~~T~A~~~L~~~T~~ 182 (192)
T TIGR01097 128 LISYFLLRLEINVRAATVVGAVGAGGIGVLLRLA---I-RQFQEAKTLALVLLLIVTVF 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH---H-HCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999998865555653044787276899998---6-03306889999999999999
No 63
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=98.34 E-value=5.8e-06 Score=55.01 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999977879999999998346367899989689989988898768999997410478999999754999999
Q gi|254780171|r 265 EFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAV 344 (398)
Q Consensus 265 ~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~I 344 (398)
.|.++++|=++++=-++-.-.|+++++||+.-.|||+.+|-|+++++.+|++|-+++-++-... |..+=
T Consensus 89 s~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~tlGas~~~vf~~i~LPLalpGIlag~i-----------LsFAr 157 (225)
T COG4149 89 SWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFFRITLPLALPGILAGVI-----------LSFAR 157 (225)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHEEEECCCCHHHHHHHHH-----------HHHHH
T ss_conf 4489999999998898999999999856845999999818880213100140221067999999-----------99999
Q ss_pred HHHHHHHH---HHHHHH-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999---999983-------------1377589999999999999999999999996787430
Q gi|254780171|r 345 GFADLVSV---GGTIIN-------------QTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 345 g~~dl~~~---~~~~~~-------------~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
+.-|.=.+ ++.+.+ |++..=+... ...+-.++|+..=.+.+|++||.+-+
T Consensus 158 alGEFGAtlm~aGNIpG~T~Tlp~aIY~~~q~g~~~~A~~-l~li~v~is~~~L~~~~~l~~~~~~~ 223 (225)
T COG4149 158 ALGEFGATLMFAGNIPGETQTLPLAIYTAVQAGNYALAHR-LVLILVVISLLVLFVSEWLARRSSKR 223 (225)
T ss_pred HHHCCCEEEEEECCCCCCCEEEHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8620570798754788853110699999998187889999-99999999999999999998764201
No 64
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=98.21 E-value=0.00033 Score=44.36 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=70.1
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q ss_conf 99999998346367899989689989988898768999997410478999999754999999999999----99999983
Q gi|254780171|r 283 EIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLV----SVGGTIIN 358 (398)
Q Consensus 283 EivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~----~~~~~~~~ 358 (398)
.--+=||..||+.-.|||+|.|-|++|.+++|-+|-|+..++-.++...+--+---=.|+.||..-|= +.-++ .
T Consensus 173 RlT~LGIrqVp~eliEA~~AFG~t~~Q~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~~i~~--l 250 (290)
T COG4176 173 RLTNLGIRQVPAELIEAADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGIQR--L 250 (290)
T ss_pred HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH--H
T ss_conf 77632410178999999997089888897872074307789986679999999999999987578776899999887--2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 137758999999999999999999999999678
Q gi|254780171|r 359 QTGQAIEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 359 ~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
.-|..+|.=+ .--++..++-.+..-+++|
T Consensus 251 dig~g~~aGl----aIVilAIiLDRitq~~~~~ 279 (290)
T COG4176 251 DIGLGFEAGL----AIVILAIILDRLTQAFGRK 279 (290)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
T ss_conf 1377776308----9999999999998884545
No 65
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.0016 Score=40.13 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999997787999999999834636789998968998998889876899999741047899999
Q gi|254780171|r 264 PEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNL 334 (398)
Q Consensus 264 p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l 334 (398)
+.+.++++....++.++..=.+|+-++++||.-.|||+-=|.+++|.+++|++|.+-..+.-.-.=+++.-
T Consensus 141 nt~~glil~~~~~~~pf~ifl~~~ff~~iP~eLeEAA~iDGas~~~if~kI~lPl~~P~iaa~aI~~fi~~ 211 (281)
T COG0395 141 NTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGA 211 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 04799999999998889999999999869899999999828965789999998703789999999999999
No 66
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.0015 Score=40.31 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=74.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q ss_conf 9999999-7787999999999834636789998968998998889876899999741047899----------9999754
Q gi|254780171|r 270 YIALSCY-TAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQY----------LNLLKNS 338 (398)
Q Consensus 270 ~iaL~l~-taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~----------i~l~K~S 338 (398)
++..++. ...|-+-+.-|+|.+||+-+.|||+-=|-+|||.+|||-+||-...++=-+.=.. .-++-|.
T Consensus 173 ~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~ivIllIL~iG~i~~~gFe~~yll~~~ 252 (309)
T COG4209 173 IIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLIVILLILNIGNIFNAGFELFYLLPNP 252 (309)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCC
T ss_conf 87898884236788999999972799999999805488778888211032314999999998523765372560660576
Q ss_pred HHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999-9999831377589999999999-99999999999999678743
Q gi|254780171|r 339 SLAVAVGFADLVSV-GGTIINQTGQAIEIILIWMFIY-LSLSIMIALFMNRLNAKIAL 394 (398)
Q Consensus 339 SLa~~Ig~~dl~~~-~~~~~~~t~~~~e~~~i~~~~Y-l~isl~iS~~~n~~~rr~~l 394 (398)
|- --+.|...+ .-...-++|+. .+..++..| -++++++-...|++-||+.=
T Consensus 253 ~~---~~v~~vldtYVy~~gl~~Gd~--s~sTAaGlf~svVg~iLl~~aN~iakr~~~ 305 (309)
T COG4209 253 SG---YDVTEVLDTYVYRGGLVTGDY--SYSTAAGLFQSVVGFILLFLANRIAKRFDN 305 (309)
T ss_pred CC---CCHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 68---748989999999810135751--189999999999999999999999997062
No 67
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysT, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysW (IPR011866 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.24 E-value=0.00047 Score=43.42 Aligned_cols=95 Identities=25% Similarity=0.234 Sum_probs=71.5
Q ss_pred HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----
Q ss_conf 9983463678999896899899888987689999974104789999997549999999999999999998313775----
Q gi|254780171|r 288 GLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQA---- 363 (398)
Q Consensus 288 gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~---- 363 (398)
=+|-++|.--|||.+||=|+||++||||+|.=. |+ ++=..+|+.+=|+-|-=++-=+..|.-+++
T Consensus 154 VL~e~~~E~EEAA~~LGAS~w~tF~~vilP~L~----PA-------LLTG~ALaFARa~GEYGSViFIAGN~P~~tEI~P 222 (265)
T TIGR02139 154 VLEEIEKELEEAAASLGASRWQTFWKVILPALL----PA-------LLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAP 222 (265)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHEEEEEECCCCC----CH-------HHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHH
T ss_conf 000588648999765168820002223314440----06-------9997899887543233300022268880678899
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------899999999999999999999999967874
Q gi|254780171|r 364 -----------IEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 364 -----------~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
++.=+.++.+=|++|+.+=...|.+..|.+
T Consensus 223 LLI~~kLEqYDY~gATaIA~vmL~~SF~~Ll~IN~lQ~~~~ 263 (265)
T TIGR02139 223 LLIFIKLEQYDYAGATAIAVVMLLISFVLLLFINLLQWRAL 263 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99977754412378999999999999999999999999750
No 68
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, This entry describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulphate ABC transporter; GO: 0015563 uptake transmembrane transporter activity, 0006810 transport, 0016020 membrane.
Probab=97.15 E-value=7.1e-06 Score=54.48 Aligned_cols=116 Identities=20% Similarity=0.098 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_conf 999999977879999999998346367899989689989988898768999997410478999999754999--------
Q gi|254780171|r 270 YIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLA-------- 341 (398)
Q Consensus 270 ~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa-------- 341 (398)
.+|...-|.=|+.-.+-==++...+.|-|||.+||=++||++|||+||. +.|++.-= +.|.-.=|++
T Consensus 155 ~lAmiFvs~PFVvRev~PVL~Elg~e~EEAA~tLGA~~WQtFwRV~LP~----i~w~llyG-v~Lt~aRAlGEFGaV~~v 229 (280)
T TIGR00969 155 ALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPS----IRWALLYG-VVLTFARALGEFGAVVVV 229 (280)
T ss_pred EEEEEEECCCCEEEEECCCHHHCCCCHHHHHHHCCCCCCEEEEEEECCC----CCHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_conf 6665342168045431001341385578999862899830267876688----72678886-787655654301107899
Q ss_pred -HHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -99999999999-999983137758999999999999999999999999678
Q gi|254780171|r 342 -VAVGFADLVSV-GGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 342 -~~Ig~~dl~~~-~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
+-|-..|.+.- -=...-|.|++.-.+.++.+. +.+|+++=.+-|-+|.|
T Consensus 230 Sgni~gkt~~lplli~~~l~~Yd~~gA~~ia~vL-~l~slv~L~~~~~Lq~R 280 (280)
T TIGR00969 230 SGNIPGKTLTLPLLIFERLEQYDYPGAYVIAAVL-LLVSLVTLFLINLLQAR 280 (280)
T ss_pred ECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 4468863120156644476603607899999999-99999999999985039
No 69
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.019 Score=33.56 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
...++++-.=....+-+=++.|=++++||.--|||+==|-+++|++++|++|-+.....=.-...|+.-.-|=-|++.+=
T Consensus 143 ~~gLil~Y~gG~ip~n~~l~Kgy~DTIP~sldEaA~iDGAt~~q~F~~IvLPLs~P~lavvaL~~FiGp~~dfiLa~~lL 222 (282)
T COG3833 143 LWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLL 222 (282)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999647326889999844503895679998654850689999999860005999999999875779999999997
Q ss_pred H-HHH
Q ss_conf 9-999
Q gi|254780171|r 346 F-ADL 349 (398)
Q Consensus 346 ~-~dl 349 (398)
- +|-
T Consensus 223 ~~~~~ 227 (282)
T COG3833 223 RDPEN 227 (282)
T ss_pred CCHHH
T ss_conf 48155
No 70
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.00015 Score=46.51 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999778799999999983463678999896899899888987689
Q gi|254780171|r 269 LYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQ 318 (398)
Q Consensus 269 ~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQ 318 (398)
.+++-..-|.-|++.-+--=.|.-.++|-|||.+||-|.||++++|-+|.
T Consensus 150 iVLaT~FVT~PFVaREliPlmq~qG~~eEeAA~~LGAsgWQtFwrVTLPn 199 (287)
T COG4208 150 IVLATIFVTCPFVARELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPN 199 (287)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 13545222161289898799988398488999872623011025675473
No 71
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.71 E-value=0.042 Score=31.54 Aligned_cols=311 Identities=16% Similarity=0.197 Sum_probs=149.0
Q ss_pred HHHHCCCCCCCHHCCCCCCCCCCCCCCCC-----CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 99972887781213889984437542235-----6865269999--99999999999999999999999999996-2642
Q gi|254780171|r 51 NMEKSNLSLGIGFLSERAGFEIDQGIVPY-----TSDSSYATAI--LVGFVNTFWLAFSGMIPATIIGTLVGAGR-LSAN 122 (398)
Q Consensus 51 nl~~~gi~~gf~FL~~~agf~I~~~~i~y-----~~~~sy~~a~--~vGl~NTl~va~~givlatiLG~~iGi~R-lS~N 122 (398)
.+++++=+.+|.=||++--|+=-..+ +| ..+|+|-..| .-=..-|+|-++.++++|.-+.+.-+|-- ---.
T Consensus 384 ~l~Nr~PeiswsaLWqkvWYEsYpeP-ayVWQStaAt~dfeaKfSL~Pi~FGTLKAA~yAMlfA~PlAvagAiYTAYFM~ 462 (733)
T COG4590 384 QLENRNPEISWSALWQKVWYESYPEP-AYVWQSTAATDDFEAKFSLVPIAFGTLKAAAYAMLFAMPLAVAGAIYTAYFMT 462 (733)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCC-HHEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 71589987448986666664238984-02231144454444432340000446899999999985899998999999537
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 46787799999999501469999999999873012103444103720352010003545355670046887788999999
Q gi|254780171|r 123 KLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSL 202 (398)
Q Consensus 123 ~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~ 202 (398)
+-.|+...--+|+.--.|-.+-=|+ .++.. -|-.+. ++ .|.....+.+-++++++=
T Consensus 463 p~mRRvVKPtIElMeAlPTViiGf~--AGlwl-AP~vE~---------------hL------pgvl~L~lLlpl~ill~G 518 (733)
T COG4590 463 PSMRRVVKPTIELMEALPTVIIGFL--AGLWL-APFVES---------------HL------PGVLALMLLLPLSILLLG 518 (733)
T ss_pred HHHHHHHCCHHHHHHHCCHHHHHHH--HHHHH-HHHHHH---------------HH------HHHHHHHHHHHHHHHHHH
T ss_conf 7564110008999753318899998--87766-677764---------------33------699999998678999997
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--------HHHHHHHHHHH
Q ss_conf 9999999986431122332045542101035589997654443322100131112682148--------78999999999
Q gi|254780171|r 203 FATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVS--------PEFMSLYIALS 274 (398)
Q Consensus 203 ~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~--------p~f~a~~iaL~ 274 (398)
+++ + ++-.+..+..|.-|-....+=....+.++.. +--|.+....|.|.++.. ..=-|++.|+.
T Consensus 519 ~~w--s-RLp~~~~~~lPaGW~a~iLiPV~l~~galaL-----wlsp~Le~~~fggdlr~wL~~d~~~YDQRNALvVG~A 590 (733)
T COG4590 519 FIW--S-RLPKAWLRRLPAGWHALILIPVLLGIGALAL-----WLSPELENALFGGDLRVWLAQDGIGYDQRNALVVGFA 590 (733)
T ss_pred HHH--H-HCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH-----HHCHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 777--6-4508773569876234688899999879998-----7174766667266377686524777232444233420
Q ss_pred HHHH--HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------H--HHHHHHHHHH
Q ss_conf 9977--87999999999834636789998968998998889876899999741047899--------9--9997549999
Q gi|254780171|r 275 CYTA--AFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQY--------L--NLLKNSSLAV 342 (398)
Q Consensus 275 l~ta--AyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~--------i--~l~K~SSLa~ 342 (398)
.-.+ --|=.|---+|-||||.-.+...|||-+||||+-||++|-|-.-+.-+++--+ | .-+-||.+.-
T Consensus 591 MGFAvIP~IFsiAEDAiFSVP~sLs~GSLALGATPWQTL~~VVlltAspGIFSAiMiG~GRAVGETMIVLMATGNtP~~~ 670 (733)
T COG4590 591 MGFAVIPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGETMIVLMATGNTPLLD 670 (733)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
T ss_conf 00222203453422443247854466730136871454014575046841889999751111062589997238985212
Q ss_pred HHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998-------31377589999999999999999999999996787430
Q gi|254780171|r 343 AVGFADLVSVGGTII-------NQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALK 395 (398)
Q Consensus 343 ~Ig~~dl~~~~~~~~-------~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~ 395 (398)
.==+..+-..+-+++ -+.+ -+.+....++.-++.++...-+..|...|++-|
T Consensus 671 ~nIFeGmRtlaAniAvEmPEseVgs~-HyRvLFL~ALvLltFTF~vNtLAE~vRqRLRek 729 (733)
T COG4590 671 WNIFEGMRTLAANIAVEMPESEVGSA-HYRVLFLAALVLLTFTFAVNTLAEWVRQRLREK 729 (733)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHCCCC-EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22877788876552121765440663-342689999999999999989999999999988
No 72
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.50 E-value=0.058 Score=30.64 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=73.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
Q ss_conf 999999998346367899989689989988898768999997410478999999754999999999---------99999
Q gi|254780171|r 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFA---------DLVSV 352 (398)
Q Consensus 282 aEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~---------dl~~~ 352 (398)
--+.--++++..|.-+|||+-||-+.+|-+|+|-+| +..|++-..++-+.-|-==|++-.|. .+.-.
T Consensus 163 vlil~PA~dgLk~ewreaa~~LGa~~~qYWrmva~P----iL~PsllGt~vlLfANAfGA~ATayaLtgsslNivPI~l~ 238 (282)
T COG4132 163 VLILTPAFDGLKKEWREAAAILGATGWQYWRMVALP----ILWPSLLGTFVLLFANAFGAYATAYALTGSSLNIVPILLY 238 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 998976666678999999998677428999999899----8519998889999998775778787750687541689999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999983137758999999999999999999999999678
Q gi|254780171|r 353 GGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 353 ~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
+++...-...+--.+.+++. -.++..+...+-+|+.||
T Consensus 239 AqIrGDVl~np~lg~ALa~~-mi~it~v~n~~~~wlr~r 276 (282)
T COG4132 239 AQIRGDVLHNPNLGYALAFG-MIVITGVANLLYIWLRKR 276 (282)
T ss_pred HHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 99821456895189999999-999999999999999987
No 73
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysW, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysT (IPR011865 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=96.33 E-value=0.00097 Score=41.49 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH----
Q ss_conf 4678779999999950146999999999987301210344410372035201000354535567004688778899----
Q gi|254780171|r 123 KLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGI---- 198 (398)
Q Consensus 123 ~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilai---- 198 (398)
|++..+|-.|+=++==.|+.. .| |.+. +-+-..|++ ++-.|+..+..++++....+.+
T Consensus 3 ~~LI~~AL~~~~l~L~lPl~~--iF-~~AF-----------~~G~~~f~~----~i~~Pd~~sA~~LTlLv~~I~VPlN~ 64 (275)
T TIGR02140 3 YLLIALALGLLVLLLLLPLIL--IF-YEAF-----------EKGVGVFFA----AISDPDALSAIKLTLLVALIVVPLNT 64 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HH-HHHH-----------HHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 578789999999999999999--99-9999-----------756999999----73595589999898866765330788
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC---HHHHHHHHHHHHHHHHHHH----------HCCCCCCCCCCCCCHH
Q ss_conf 99999999999986431122332045542101---0355899976544433221----------0013111268214878
Q gi|254780171|r 199 VLSLFATRLSRHFHEKTGKALPLLYISTFLIF---GLPTLVLIALKYQLHFDKP----------VLGQFNFIGGSTVSPE 265 (398)
Q Consensus 199 ila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~---~~p~l~~~~~~~~~~~~~p----------~l~~f~~~gG~~l~p~ 265 (398)
+-++.. -|.-.+.+-+||..-...+-..+-+ ...+...+++| ...|..| .++.+-.+.|+++.=.
T Consensus 65 ~FGv~~-Aw~~~rf~FpGk~lL~t~iDlPFSVSPVvAGL~~~LLyG-rqGW~~PliedGvrfsG~lG~~l~~~d~~IiF~ 142 (275)
T TIGR02140 65 VFGVAA-AWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYG-RQGWSQPLIEDGVRFSGWLGPWLEDRDIKIIFS 142 (275)
T ss_pred HHHHHH-HHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCCCCHHHCCCCEECCCHHHHHHCCCEEEEC
T ss_conf 999999-999874316745767777760443224899999999843-100136223434200042027888628858871
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQ 318 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQ 318 (398)
....+++=..-|+=|+|-=+===.+.-.+.|-|||..||=|.||+++||.+|-
T Consensus 143 ~PGivLAT~FVT~PFVAREliPvl~~qG~~~EeAAltLGAs~WqtFwrVTLPn 195 (275)
T TIGR02140 143 LPGIVLATIFVTLPFVARELIPVLEEQGTEQEEAALTLGASWWQTFWRVTLPN 195 (275)
T ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 41341023432588012200113631594689999872776223335661687
No 74
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=96.13 E-value=0.093 Score=29.40 Aligned_cols=290 Identities=20% Similarity=0.210 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCHHC-CCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999-99999999972887781213-889--98443754223568652699999999999999
Q gi|254780171|r 24 VHNISVQIILALLLTVIFLWC-VNNVYNNMEKSNLSLGIGFL-SER--AGFEIDQGIVPYTSDSSYATAILVGFVNTFWL 99 (398)
Q Consensus 24 ~~~~~~Q~~~~~~~~~~~~~l-~~n~~~nl~~~gi~~gf~FL-~~~--agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~v 99 (398)
.|++..-++.+..+-.+.+.+ ...-.+++...|+=-|+.|. ..- -.|+| .|..++|-..-+..-+--|+..
T Consensus 6 lR~ill~~ltLliLslvgfsl~~fdP~apl~~~~l~~g~~~y~~~Llq~dFGi-----s~~nG~pi~~~l~~vfPaT~EL 80 (321)
T COG4168 6 LRRILLLILTLLILTLVGFSLSYFDPHAPLQGASLWQGWVFYFNGLLQWDFGI-----SSINGQPIAEQLLEVFPATMEL 80 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCCHHHHHHHHHCCCHHHH
T ss_conf 99999999999999999888521389973013069999999998885203252-----1569800899999866618999
Q ss_pred HHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHH-HCCCHHHHHHCCCCEEEEE
Q ss_conf 9999999999999999996--2642467877999-99999501469--999999999873-0121034441037203520
Q gi|254780171|r 100 AFSGMIPATIIGTLVGAGR--LSANKLVAWICRV-YVEVFRNIPPL--VVIFFLYKSVLS-VLPIPDHSIVLPFGMFLNN 173 (398)
Q Consensus 100 a~~givlatiLG~~iGi~R--lS~N~ll~~la~~-YVE~~RN~PLL--lql~fwy~~v~~-~lP~~~~~~~~~~~~flsn 173 (398)
.+.+..+|.+.|.-+|+.- .|..|+-+.+... |+.+ .+|.- --+...++++.. .+|..
T Consensus 81 C~~af~lal~~GiPlG~iagv~~~kw~d~~i~~is~~G~--SiPvFWlAl~ll~f~slh~~~~pv~-------------- 144 (321)
T COG4168 81 CFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGF--SIPVFWLALLLLLFFSLHLGWLPVS-------------- 144 (321)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCEECC--------------
T ss_conf 999999999984647988775423078899999998546--7459999999999999751411034--------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10003545355670046887788999999999999998643112233204554210103558999765444332210013
Q gi|254780171|r 174 RGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQ 253 (398)
Q Consensus 174 RGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~ 253 (398)
|+. ......--+-++|.+-.++...|..-+.-
T Consensus 145 ------------------------------------------Gry--dLLY~ikpiTGfalIDawls~spyRt~~i---- 176 (321)
T COG4168 145 ------------------------------------------GRY--DLLYEIKPITGFALIDAWLSDSPYRTEMI---- 176 (321)
T ss_pred ------------------------------------------CCE--EEEEEECCCCCCHHHHHHHCCCCHHHHHH----
T ss_conf ------------------------------------------310--14565045466277889863770578999----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1112682148789999999999977879999999----998346367899989689989988898768999997410478
Q gi|254780171|r 254 FNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRS----GLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTS 329 (398)
Q Consensus 254 f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~----gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~n 329 (398)
-...-.+.+--..-+-|-..|+.|- ..+-..+.-..||..=|+|+++..|+-++-.|+.-++|.++-
T Consensus 177 ---------qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qNyikaA~trGlS~~~Ilr~hVlrNalPplIPq~g~ 247 (321)
T COG4168 177 ---------QSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTILRRHVLRNALPPLIPQLGL 247 (321)
T ss_pred ---------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf ---------99999988889999973479999999998999974248999996560355899999985047854441367
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999975499-999999999999-99998313775899999999----9999999999999999678
Q gi|254780171|r 330 QYLNLLKNSSL-AVAVGFADLVSV-GGTIINQTGQAIEIILIWMF----IYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 330 q~i~l~K~SSL-a~~Ig~~dl~~~-~~~~~~~t~~~~e~~~i~~~----~Yl~isl~iS~~~n~~~rr 391 (398)
|+-.+..---+ -++-|-|.+=.- -+.+.+|.|.++..=.++.. +-=++|=++...+|=++||
T Consensus 248 qfs~mLTlamitEs~f~WPGiGRWLinAi~qqDy~sIsaGViViG~lviivnvlsdi~gam~~Plk~K 315 (321)
T COG4168 248 QFSTMLTLAMITESVFGWPGIGRWLINAIRQQDYASISAGVIVIGSLVIIVNVLSDILGAMANPLKHK 315 (321)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHCCEEEEEEEEEEHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999828975259999998760067663562798665441888899999972920103
No 75
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.16 Score=28.02 Aligned_cols=68 Identities=25% Similarity=0.265 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 487899999999999778799999999983463678999896899899888987689999974104789
Q gi|254780171|r 262 VSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQ 330 (398)
Q Consensus 262 l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq 330 (398)
..||+.-.-++. +-|-=|+-=.+=+|..++|..-+|+|+.++++.|..+|+|++|-.+...+-.+.+.
T Consensus 382 ~~~ei~l~pL~~-~gT~~Yi~~n~iaG~ka~P~e~~e~akny~l~~w~k~r~iilP~tFPYlitG~~tt 449 (523)
T COG4986 382 LTPEIWLSPLGF-IGTFYYIFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLSTT 449 (523)
T ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 074577746777-66789999999987652778999999970835599888875364229998747753
No 76
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.57 E-value=0.16 Score=27.95 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q ss_conf 63678999896899899888987689999974---1047899999975499999--------999999999999
Q gi|254780171|r 293 PRGQMEAAIALGLTHRKATRLVLLPQAMRSII---PPLTSQYLNLLKNSSLAVA--------VGFADLVSVGGT 355 (398)
Q Consensus 293 pkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~i---P~l~nq~i~l~K~SSLa~~--------Ig~~dl~~~~~~ 355 (398)
.-.-..||+|+|.+..+.|.+-++|.|+-..+ |-..+--+ +.=|||-.. =..-|+.++++.
T Consensus 231 n~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~si--tTltsLdFLgfglp~gspSLGELl~qgk~ 302 (341)
T COG4239 231 NLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSI--TTLTSLDFLGFGLPPGSPSLGELLNQGKN 302 (341)
T ss_pred CHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCH--HHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 2688999997398865030213262988999998789870633--23001666526999999678999997652
No 77
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014).
Probab=93.86 E-value=0.44 Score=25.28 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999778799999999983463678999896899899888987689999974104789999997549999999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig 345 (398)
....++|=+++..+--.|-+++++.. .+++.|+..|||-|++|..+. ...||+|.++=|..|+ .|.-- .|.
T Consensus 129 i~GMilGNsMna~sLal~rl~~~l~~-~~~~iE~~LaLGAt~~~A~~~-~~r~Air~aliP~in~----m~~vG---lVs 199 (250)
T pfam03649 129 LMGMIIGNTMNTIHLALDKLIDMVKS-ERDIIWGYLALGATPIQALAP-FIRNAIRAALIPTVNR----TKSVG---LVS 199 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHH----HHHCC---HHC
T ss_conf 99999962299999999999999998-799999999879998999999-9999999985626999----87801---212
Q ss_pred HHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999999999983137758999
Q gi|254780171|r 346 FADLVSVGGTIINQTGQAIEII 367 (398)
Q Consensus 346 ~~dl~~~~~~~~~~t~~~~e~~ 367 (398)
.|-++ ++|...... ++|..
T Consensus 200 LPGmM-TGqILaG~~--Pl~Av 218 (250)
T pfam03649 200 LPGMM-VGMLLAGAD--PIYAA 218 (250)
T ss_pred CCHHH-HHHHHCCCC--HHHHH
T ss_conf 64689-998964998--89999
No 78
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=91.76 E-value=0.87 Score=23.48 Aligned_cols=247 Identities=17% Similarity=0.235 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC-CCCEEEE-ECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999950146999999999987301210344410-3720352-0100035453-5567004688778899999999
Q gi|254780171|r 128 ICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVL-PFGMFLN-NRGLSFPTLT-MDTNAKIFVFSFVLGIVLSLFA 204 (398)
Q Consensus 128 la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~-~~~~fls-nRGL~iP~p~-~~~g~~~~l~~lilaiila~~l 204 (398)
+|..=-|+==|-|+=+|=+=|-.- ..++ ||-.|+| ||-++.--.. .-....+...++++.+..++-+
T Consensus 51 lA~~R~~LGLd~PLyvqY~~wl~~----------~~hLDFGiSYi~i~rpV~De~~~~LPaTl~LA~~aL~i~vlvSvPL 120 (315)
T TIGR02789 51 LADVRHELGLDQPLYVQYVNWLWK----------ALHLDFGISYISIDRPVLDEVARSLPATLELAGLALVIVVLVSVPL 120 (315)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHH----------HHHHCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998867517888077878999999----------9873146405666895088897435388999999999999998408
Q ss_pred HHHHHHHHHH----HCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCC--CCHHHHHHHHHHHHHH
Q ss_conf 9999998643----112233204554210103558999765444332-21001311126821--4878999999999997
Q gi|254780171|r 205 TRLSRHFHEK----TGKALPLLYISTFLIFGLPTLVLIALKYQLHFD-KPVLGQFNFIGGST--VSPEFMSLYIALSCYT 277 (398)
Q Consensus 205 ~~~a~~~~~~----tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~-~p~l~~f~~~gG~~--l~p~f~a~~iaL~l~t 277 (398)
+.++...|++ .-|....+..+.--+.. -..++..+..+.+ .|..+ .||++ +-| ..++++-+
T Consensus 121 G~LAA~~r~~~~D~~~R~~~FlG~siPnFWL---A~LLv~~fsvyL~lLP~~G----~gtW~HlvLP-----~~tlal~~ 188 (315)
T TIGR02789 121 GILAARYRDRLPDHAVRFISFLGVSIPNFWL---AFLLVFLFSVYLDLLPVEG----AGTWQHLVLP-----AVTLALMS 188 (315)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCC----CCCCCHHHHH-----HHHHHHHH
T ss_conf 8999887368640789999999643056899---9999999999861337677----8733113388-----89999999
Q ss_pred HHHHHHHHHHHHHHC-CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHH
Q ss_conf 787999999999834-6367899989689989988898768999997410478999999754999999-999999-9999
Q gi|254780171|r 278 AAFIAEIVRSGLIAV-PRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAV-GFADLV-SVGG 354 (398)
Q Consensus 278 aAyiaEivR~gI~sV-pkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~I-g~~dl~-~~~~ 354 (398)
=|--+--.|+...-. .+--..=||.=|+++.+++++=|||.|..-++-+++=+...|+-+|=..=.| +.|=+= +...
T Consensus 189 ~a~y~RLLRaS~Ld~~qe~yv~yAR~RGi~~~~v~~~H~Lrna~~p~iTA~GM~~g~Ll~GT~viE~iFswPG~GRy~i~ 268 (315)
T TIGR02789 189 VAIYARLLRASMLDNLQERYVTYARVRGIKERNVIRRHILRNAILPMITALGMHIGELLGGTLVIENIFSWPGVGRYAIS 268 (315)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEHECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
T ss_conf 99999999999998628870730110264657768863241110256776001388784071145410126661045743
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC
Q ss_conf 998313775899999999999999-999999999967874304
Q gi|254780171|r 355 TIINQTGQAIEIILIWMFIYLSLS-IMIALFMNRLNAKIALKE 396 (398)
Q Consensus 355 ~~~~~t~~~~e~~~i~~~~Yl~is-l~iS~~~n~~~rr~~l~e 396 (398)
-+-|+-+=.+.+|...|..-+++| +++-.+--|++=|.+-+|
T Consensus 269 AifNRDyPviQcy~Ll~~~lfv~cNLivD~~~a~lDPR~rR~E 311 (315)
T TIGR02789 269 AIFNRDYPVIQCYTLLMALLFVLCNLIVDLLQALLDPRIRRKE 311 (315)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 3562376389999999999999999999999985187611104
No 79
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=89.25 E-value=1.5 Score=22.12 Aligned_cols=198 Identities=17% Similarity=0.163 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
Q ss_conf 99999999999999999999999999999962642467877999999995014699999999998730121034441037
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPF 167 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~ 167 (398)
.++.=..||+.||..+++++.+.|+.++..--+.+.--++.-..-+.-.-..|-.+-=.+.|..+-+.=|.
T Consensus 20 ~l~~iv~~tl~vSl~~i~laalv~~pLa~vl~~~~frgkr~i~~i~~tl~s~PTVlvGLlLylLlSr~GPl--------- 90 (227)
T COG4662 20 ELIGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPTVLVGLLLYLLLSRSGPL--------- 90 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---------
T ss_conf 99999999999999999999975328999999834754799999998863163999999999999646998---------
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 20352010003545355670046887788999999999999998643112233204554210103558999765444332
Q gi|254780171|r 168 GMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 (398)
Q Consensus 168 ~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 247 (398)
-+.+...+..+.++| +
T Consensus 91 ---------------G~f~LLfT~~amILG---------------------------------------q---------- 106 (227)
T COG4662 91 ---------------GWFNLLFTQDAMILG---------------------------------------Q---------- 106 (227)
T ss_pred ---------------CCCHHHHHHHHHHHH---------------------------------------H----------
T ss_conf ---------------630367621069988---------------------------------------7----------
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001311126821487899999999999778799999999983463678999896899899888987689999974104
Q gi|254780171|r 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398)
Q Consensus 248 ~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398)
.+++|-++.+ -+-++++|+|+--.|-|+++|.|+.|.+-.++-.-..-.+=-.
T Consensus 107 ---------------------~iL~lPlvia-----~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~Earf~l~aav- 159 (227)
T COG4662 107 ---------------------AILILPLVIA-----FVLTALESVDPRLKELARSLGASPLKLASTVFREARFGLMAAV- 159 (227)
T ss_pred ---------------------HHHHHHHHHH-----HHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-
T ss_conf ---------------------9999999999-----9999998459789999998099589999999999986799999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 789999997549999999999999--------9999-983137-758999999999999999999999999678
Q gi|254780171|r 328 TSQYLNLLKNSSLAVAVGFADLVS--------VGGT-IINQTG-QAIEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 328 ~nq~i~l~K~SSLa~~Ig~~dl~~--------~~~~-~~~~t~-~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
..--.-.+.-+|+.-++. +..| +.-+|- -.++-=...+.+-+.+++.++.+.+++.+|
T Consensus 160 ------~agfgR~V~EvG~AmmvGGnI~g~TR~itTAIslET~kG~fa~gIaLgiVLlaial~ln~vl~~l~~~ 227 (227)
T COG4662 160 ------AAGFGRAVAEVGVAMMVGGNIRGRTRVITTAISLETNKGNFAQGIALGIVLLAIALALNFVLTALQGK 227 (227)
T ss_pred ------HHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ------99861799986277603575111223300244356034529885899999999999999999984469
No 80
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents thiamine ABC transporter, permease protein in bacteria, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane. The protein belongs to the larger ABC transport system. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). Thiamine pyrophosphate (TPP)1 is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and -ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=89.12 E-value=1.5 Score=22.06 Aligned_cols=122 Identities=20% Similarity=0.289 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 999999997787999999999834636789998968998998889876899999741047899999975499999999--
Q gi|254780171|r 269 LYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGF-- 346 (398)
Q Consensus 269 ~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~-- 346 (398)
.++|-..+.=---|+.+=-++++||-.|+.=|.-|||..||=+|.|-.|- +|.-+||..+- |-+.==||-+.+.+.
T Consensus 135 IL~AH~FFN~PlA~~LlLQ~L~~IP~~QRQLAAQL~l~~W~F~~lVEWP~-lR~Q~~P~~~L-IFMLCF~SF~~VL~LGG 212 (519)
T TIGR01253 135 ILLAHLFFNLPLAARLLLQALESIPYEQRQLAAQLNLRSWQFVKLVEWPV-LRRQILPVAAL-IFMLCFASFAVVLSLGG 212 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECHH-HHHHCCHHHHH-HHHHHHHHHHHHHHCCC
T ss_conf 99999996156999999998741781577999971677530566630512-33211258999-99999888999873589
Q ss_pred -HHHHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -99999---999998313775899999999999999999999999967874
Q gi|254780171|r 347 -ADLVS---VGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIA 393 (398)
Q Consensus 347 -~dl~~---~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~ 393 (398)
|.-+. .--+.....|..=..=.. +..=++.|+.+-.+..++.|..+
T Consensus 213 GPQ~TT~E~AIYQA~~y~yD~~~AAll-AlLQ~V~CL~L~~L~~RlS~~~~ 262 (519)
T TIGR01253 213 GPQATTLELAIYQALLYDYDLAKAALL-ALLQFVFCLILVLLSSRLSKAIA 262 (519)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 840689999999998731684689999-99999999999999887876405
No 81
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=84.44 E-value=0.46 Score=25.17 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCHHHHHHHHHHHH
Q ss_conf 53556700468877889999999999999986431122332-045542101035589997654
Q gi|254780171|r 181 LTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPL-LYISTFLIFGLPTLVLIALKY 242 (398)
Q Consensus 181 p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~-~~~~~~~~~~~p~l~~~~~~~ 242 (398)
|...+|++.|+...++++..+...+......+....+.... ....+.+++++|.++++++.+
T Consensus 3 p~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~y 65 (99)
T TIGR01726 3 PFLLKGLLLTLLISVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIY 65 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999999999999999999987135999999999999996207999999999
No 82
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.28 E-value=3.6 Score=19.73 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4878999999999997787999999999834636789998968998998889876899999741047
Q gi|254780171|r 262 VSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLT 328 (398)
Q Consensus 262 l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~ 328 (398)
+.+.|.+.+-+-.++.--|+--+.-+.-|++|.--..-|+++|-|++|++.+|-+|--+|..+-.+.
T Consensus 411 l~~~w~~Vvw~H~~fv~P~v~l~Ls~pWq~~dsrf~kIA~~lGks~~~Iff~vklPLlfra~L~A~A 477 (551)
T COG4135 411 LDGSWTAVVWGHLLFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAKIFFYVKLPLLFRACLIAFA 477 (551)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 6874399999999999999999847457552708999998708306678887504576799999999
No 83
>pfam02954 HTH_8 Bacterial regulatory protein, Fis family.
Probab=80.40 E-value=2.9 Score=20.32 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999998346367899989689989988898
Q gi|254780171|r 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 282 aEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
-+.+..+++.-.--|.+||+.||+|+...++++
T Consensus 7 r~~I~~aL~~~~gn~~~aA~~LGisr~tL~~km 39 (42)
T pfam02954 7 KELIEAALERTGGNKSKAARLLGISRRTLYRKL 39 (42)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999949979999999796999999999
No 84
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=78.49 E-value=3.3 Score=19.95 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHH
Q ss_conf 99997787999999999834636789998968998998
Q gi|254780171|r 273 LSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKA 310 (398)
Q Consensus 273 L~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~ 310 (398)
|-=....|=-|.++.++..----|+-||..||||+.|-
T Consensus 305 l~~~~~~~E~~ll~~AL~~~~fNQr~AAe~LGLtYHQl 342 (349)
T TIGR02974 305 LKQAVQDYEIELLQQALAEAQFNQRKAAELLGLTYHQL 342 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHH
T ss_conf 89999999999999999873034789998725736899
No 85
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=72.11 E-value=6.5 Score=18.16 Aligned_cols=178 Identities=24% Similarity=0.352 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999972887781213889984437542235686526999999999999999999999
Q gi|254780171|r 27 ISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIP 106 (398)
Q Consensus 27 ~~~Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givl 106 (398)
+..-++++.++.+-.+--.+=...||+.| |+.-...|..+. |+=+.|=|=| ++-|--+||-.+.+-.+.
T Consensus 6 ~i~~v~~~lAl~A~~~aphDP~~~~l~~r-------l~~pS~~YpLGT---D~LGRCI~SR-l~~G~R~SLg~al~~l~~ 74 (258)
T TIGR02790 6 VIVAVLFLLALFAPFLAPHDPLAQNLEMR-------LLGPSMEYPLGT---DHLGRCIFSR-LLFGARVSLGLALLVLGL 74 (258)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHC-------CCCCCCCCCCCC---CCCCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 99999999999865751179256405620-------689965478988---7531047999-999999999999999999
Q ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 999999999996-2642467877999999995014699999999998730121034441037203520100035453556
Q gi|254780171|r 107 ATIIGTLVGAGR-LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDT 185 (398)
Q Consensus 107 atiLG~~iGi~R-lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~ 185 (398)
...+|+.+|..- .-.=++=+-+-|+ +|+|=--|-.+-.++.
T Consensus 75 ~~~iG~~iG~~aGy~GG~vD~~~MR~-~D~~lsfPt~~L~L~i------------------------------------- 116 (258)
T TIGR02790 75 VLVIGVLIGLIAGYIGGRVDEVIMRV-CDVFLSFPTIVLALAI------------------------------------- 116 (258)
T ss_pred HHHHHHHHHHHHHCCCCHHHEEHHHH-HHHHHHHHHHHHHHHH-------------------------------------
T ss_conf 99999999998530154020002554-7588755789999999-------------------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 70046887788999999999999998643112233204554210103558999765444332210013111268214878
Q gi|254780171|r 186 NAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPE 265 (398)
Q Consensus 186 g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~ 265 (398)
+|+ +-|.
T Consensus 117 ----------vG~---------------------------------------------------------------lG~G 123 (258)
T TIGR02790 117 ----------VGL---------------------------------------------------------------LGPG 123 (258)
T ss_pred ----------HHH---------------------------------------------------------------HCCC
T ss_conf ----------857---------------------------------------------------------------4347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999977879999999998346367-89998968998998889876899999741047899999
Q gi|254780171|r 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQ-MEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNL 334 (398)
Q Consensus 266 f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ-~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l 334 (398)
+.-.++|+.+-.=|+=|-+|||=+.|..|-. .||||+.|=|++|.+++=|+ |+..++.+.+
T Consensus 124 l~nviiA~vl~~Wa~YAR~vRg~v~Slk~~~fvlaar~~g~s~~~ii~rHi~--------~~i~~~iiVL 185 (258)
T TIGR02790 124 LENVIIALVLVQWAWYARMVRGMVVSLKQKEFVLAARASGASHWQIIRRHIL--------PNILSPIIVL 185 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCC--------CCCHHHHHHH
T ss_conf 9999999999754789999999999998688999999975898445042113--------2101479999
No 86
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=70.43 E-value=2.9 Score=20.33 Aligned_cols=18 Identities=44% Similarity=0.420 Sum_probs=14.9
Q ss_pred HHHHHHHHCCCHHHHHHH
Q ss_conf 789998968998998889
Q gi|254780171|r 296 QMEAAIALGLTHRKATRL 313 (398)
Q Consensus 296 Q~EAA~aLGls~~q~~r~ 313 (398)
|--|||.|||||+|+=..
T Consensus 546 QAKAARlLg~TPRQVgYa 563 (574)
T TIGR01817 546 QAKAARLLGLTPRQVGYA 563 (574)
T ss_pred HHHHHHHHCCCHHHHHHH
T ss_conf 999999737865589999
No 87
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated
Probab=69.41 E-value=7.5 Score=17.80 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HCCCHHHHHHHHHHHHHHHHH
Q ss_conf 26999999999999999999999999999999996------------------------264246787799999999501
Q gi|254780171|r 84 SYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR------------------------LSANKLVAWICRVYVEVFRNI 139 (398)
Q Consensus 84 sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R------------------------lS~N~ll~~la~~YVE~~RN~ 139 (398)
.-.+....++..++.++.=-+..|.+.|+++++.. +..+|..+.+.....|+|.|+
T Consensus 5 ~~i~l~~~al~~~l~ls~P~L~~alvVGl~Isi~QA~TqIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~if~~i 84 (89)
T PRK05700 5 SVMDLFREAMKVALMLAAPLLLVALIVGLVVSIFQAATQINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTLFTNI 84 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998889999999999999999999999989987999999999999987899999999999999987
Q ss_pred HHHH
Q ss_conf 4699
Q gi|254780171|r 140 PPLV 143 (398)
Q Consensus 140 PLLl 143 (398)
|-++
T Consensus 85 p~lv 88 (89)
T PRK05700 85 PTLI 88 (89)
T ss_pred HHHC
T ss_conf 7666
No 88
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=63.86 E-value=9.6 Score=17.13 Aligned_cols=204 Identities=17% Similarity=0.247 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-HHHH-----HHHHHHHHHHHHHHHHCCCC--
Q ss_conf 556700468877889999999999999986431122332045542101-0355-----89997654443322100131--
Q gi|254780171|r 183 MDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIF-GLPT-----LVLIALKYQLHFDKPVLGQF-- 254 (398)
Q Consensus 183 ~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~-~~p~-----l~~~~~~~~~~~~~p~l~~f-- 254 (398)
..-|+|.+++.-.+++-+++..+. +.|.....|.....++- ..|. +...++.-.-.++...+.|.
T Consensus 136 iSlGlw~tli~YliSIPLGI~KAv-------~~gs~fDvwsS~viiigyAiP~FlfailLiVlFaGGsy~dwFPLRGLvS 208 (364)
T COG4174 136 ISLGLWSTLIIYLISIPLGIRKAV-------RNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAGGSYFDWFPLRGLVS 208 (364)
T ss_pred EEHHHHHHHHHHHHHCCHHHHHHH-------HCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf 876899999999974333288887-------4798420221136887324279999999997415876101200146345
Q ss_pred -CCCC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf -1126----------82148789999999999977879999999-99834636789998968998998889876899999
Q gi|254780171|r 255 -NFIG----------GSTVSPEFMSLYIALSCYTAAFIAEIVRS-GLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRS 322 (398)
Q Consensus 255 -~~~g----------G~~l~p~f~a~~iaL~l~taAyiaEivR~-gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~ 322 (398)
|+.. -++++-+..|.+ +-.=|-.+-..+- =+.-+.|--.-.|||-|+|..+.+..-++-.|+-.
T Consensus 209 dnf~~L~~~~ki~DYlWH~tLPv~a~v----~g~FAt~TlLtKNSFldEi~KqYVvTARAKGlserrvly~HVFRNAMLl 284 (364)
T COG4174 209 DNFDQLSWYGKITDYLWHITLPVLALV----LGGFATLTLLTKNSFLDEIRKQYVVTARAKGLSERRVLYKHVFRNAMLL 284 (364)
T ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 883434727888999999888899999----8667778887530589997645266323158855452699886342788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HH-HHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7410478999999754999999999-9999-99-9998313775-8999999999999999999999999678743047
Q gi|254780171|r 323 IIPPLTSQYLNLLKNSSLAVAVGFA-DLVS-VG-GTIINQTGQA-IEIILIWMFIYLSLSIMIALFMNRLNAKIALKEK 397 (398)
Q Consensus 323 ~iP~l~nq~i~l~K~SSLa~~Ig~~-dl~~-~~-~~~~~~t~~~-~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er 397 (398)
++-..-..++...-..||..-+=+. |=.. .+ ..+.++.+-. +-..-+-.++=|..++.--..-.|.+-|+....|
T Consensus 285 viaGfP~afis~FFTgSLLIE~iFSLdGlGllgyea~v~RDYPvvfgtLyIftL~GL~~~lisDl~yt~vDPRIdFe~r 363 (364)
T COG4174 285 VIAGFPAAFISMFFTGSLLIEVIFSLDGLGLLGYEAVVSRDYPVVFGTLYIFTLIGLLVSLISDLTYTLVDPRIDFEAR 363 (364)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCC
T ss_conf 7617809999999712479999872366211106878647886421668999999999999754417864575564557
No 89
>PTZ00042 stevor; Provisional
Probab=61.59 E-value=11 Score=16.88 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999831377589999999999999999999999996787
Q gi|254780171|r 343 AVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKI 392 (398)
Q Consensus 343 ~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~ 392 (398)
+.+..|+...+-+.++. +++++.+++++-+++..++-.+-=|+-||=
T Consensus 244 ~~~~sD~ag~aa~~A~~---~F~P~GIaalVLlilaVvLIILYIWLyrRR 290 (304)
T PTZ00042 244 AAGASDLAGTAATAAMA---AFYPCGIAALVLLILAVVLIILYIWLYRRR 290 (304)
T ss_pred EEECCCCHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55110000078888886---411629999999999999999999999841
No 90
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=60.64 E-value=11 Score=16.77 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 79999999998346367899989689989988898
Q gi|254780171|r 280 FIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 280 yiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
+--+.++.++..-.--+.+||+.||+++...+|++
T Consensus 405 ~Er~~I~~aL~~~~gn~~~aA~~LGisR~tLyrKl 439 (441)
T PRK10365 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 (441)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999939989999999788999999996
No 91
>PRK09699 D-allose transporter subunit; Provisional
Probab=59.88 E-value=8.2 Score=17.57 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=30.8
Q ss_pred CCCCHHCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
Q ss_conf 77812138899844375422-3568652699999999999999999999999999999999--62642467877999999
Q gi|254780171|r 58 SLGIGFLSERAGFEIDQGIV-PYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAG--RLSANKLVAWICRVYVE 134 (398)
Q Consensus 58 ~~gf~FL~~~agf~I~~~~i-~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~--RlS~N~ll~~la~~YVE 134 (398)
..|-.|.--..|+|+|-+-. ..+. --.+.....|..+.......++..+.++|.+-|.. ++.=++.+-.+++.++
T Consensus 66 AlG~t~Vii~GgiDLSvgs~~~l~~-~~~~~l~~~~~~~~~~a~l~~l~~g~~iG~iNG~lv~~~~ip~fIvTLgt~~i- 143 (325)
T PRK09699 66 GMGEFFAILVAGIDLSVGAILALSG-MVTAKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAI- 143 (325)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-
T ss_conf 9999999993786152999999999-99999998478619999999999999999998597775087759999999999-
Q ss_pred HHHH
Q ss_conf 9950
Q gi|254780171|r 135 VFRN 138 (398)
Q Consensus 135 ~~RN 138 (398)
+|.
T Consensus 144 -~~G 146 (325)
T PRK09699 144 -FRG 146 (325)
T ss_pred -HHH
T ss_conf -998
No 92
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=58.64 E-value=12 Score=16.56 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 7879999999998346367899989689989988898
Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
..+--+++..+++--.-.|.+||+.||+|+...+|++
T Consensus 284 ~~~Ek~~I~~aL~~~~gn~~~aA~~LGIsR~tL~~kl 320 (325)
T PRK11608 284 HQQEKELLQRSLQQAKFNQKRAAELLGLTYHQFRALL 320 (325)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999939989999999888999999999
No 93
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=56.08 E-value=13 Score=16.30 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCCCCCHHCCCCCCC
Q ss_conf 999999972887781213889984
Q gi|254780171|r 47 NVYNNMEKSNLSLGIGFLSERAGF 70 (398)
Q Consensus 47 n~~~nl~~~gi~~gf~FL~~~agf 70 (398)
.....+++.|+..|.+|-.+..|=
T Consensus 92 ~~~~~~~~~~~~~G~~wsE~~~GT 115 (639)
T PRK11388 92 QTLQQLSALGFNDGTYCAEGIIGT 115 (639)
T ss_pred HHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 898899966976786422258886
No 94
>pfam03552 Cellulose_synt Cellulose synthase. Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterized genes found in Acetobacter and Agrobacterium sp. More correctly designated as 'cellulose synthase catalytic subunits', plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity.
Probab=55.73 E-value=13 Score=16.27 Aligned_cols=37 Identities=8% Similarity=-0.039 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 148789999999999977879999999998346367899
Q gi|254780171|r 261 TVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEA 299 (398)
Q Consensus 261 ~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EA 299 (398)
..+|-|+.....+.+|-.|+.+-+.|+-... .+||+.
T Consensus 614 ~~s~lfip~ttl~i~Nlva~v~g~~~~i~~g--~~~~~~ 650 (716)
T pfam03552 614 KWTTLLIPPTTLLIVNLVGIVAGVSRAINSG--YPSWGP 650 (716)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHH
T ss_conf 5165688999999999999999999998626--651678
No 95
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=50.55 E-value=16 Score=15.76 Aligned_cols=100 Identities=27% Similarity=0.355 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999997288778121388998443754223568652699999999999999999
Q gi|254780171|r 23 RVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFS 102 (398)
Q Consensus 23 ~~~~~~~Q~~~~~~~~~~~~~l~~n~~~nl~~~gi~~gf~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~ 102 (398)
|.++.+.-.+...+=++.-+|+..-. |+++++.-+..+...+ .+ +.|.. -.+..+
T Consensus 5 ~lk~~fltGLlvllPlaiT~~vv~~i------------~~~l~~~~~~~lp~~~---~~-~~~~~---------~~i~~l 59 (222)
T COG2928 5 RLKKYFLTGLLVLLPLAITLWVVSWI------------FGLLDQFVGPLLPDRL---RP-AVYFP---------FNIPGL 59 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHCCCHH---CH-HHCCC---------HHHHHH
T ss_conf 89999998899999999999999999------------9999876443042121---22-21476---------034788
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999962642467877999999995014699999999998
Q gi|254780171|r 103 GMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSV 152 (398)
Q Consensus 103 givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v 152 (398)
|.+++.++.+++|.+ .+|-.-|++...+-.+.|-+|+.=.+ |.++
T Consensus 60 g~il~iili~l~G~l--~~~~ig~~l~~~~d~~L~RiPlv~~I---Y~s~ 104 (222)
T COG2928 60 GVILAIILIFLLGFL--ARNMIGRSLLSLGDSLLRRIPLVKSI---YKSA 104 (222)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCHHHH---HHHH
T ss_conf 999999999999999--99875548999999997007528889---9999
No 96
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=50.24 E-value=16 Score=15.73 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 879999999998346367899989689989988898
Q gi|254780171|r 279 AFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 279 AyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
.+--+++..++.-..--+.+||+.||+++..-+|++
T Consensus 428 ~~Er~~I~~aL~~~~gn~~~aA~~LGisR~TLyrKl 463 (469)
T PRK10923 428 ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 (469)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999909989999999898999999999
No 97
>pfam05297 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1). This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys.
Probab=46.34 E-value=19 Score=15.36 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780171|r 142 LVVIFFLYKSV 152 (398)
Q Consensus 142 Llql~fwy~~v 152 (398)
|+-++||+|.+
T Consensus 33 llAlLfW~~Ii 43 (382)
T pfam05297 33 LLALLFWLYIV 43 (382)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 98
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.10 E-value=7.5 Score=17.77 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=5.8
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999999728877
Q gi|254780171|r 47 NVYNNMEKSNLSL 59 (398)
Q Consensus 47 n~~~nl~~~gi~~ 59 (398)
....-.++.||+.
T Consensus 72 ~~l~~A~~agIPv 84 (280)
T cd06315 72 AELELAQKAGIPV 84 (280)
T ss_pred HHHHHHHHCCCCE
T ss_conf 9999999879978
No 99
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.93 E-value=22 Score=14.94 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780171|r 96 TFWLAFSGMIPATIIGTLVG 115 (398)
Q Consensus 96 Tl~va~~givlatiLG~~iG 115 (398)
++.++++.|++|.+.|++.|
T Consensus 2 ~l~lail~ivl~ll~G~~~G 21 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGG 21 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 02899999999999999999
No 100
>pfam06850 PHB_depo_C PHB de-polymerase C-terminus. This family represents the C-terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=41.55 E-value=22 Score=14.90 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=18.8
Q ss_pred CHHHHHHHHHH--CCCHHHHHHHHH
Q ss_conf 63678999896--899899888987
Q gi|254780171|r 293 PRGQMEAAIAL--GLTHRKATRLVL 315 (398)
Q Consensus 293 pkGQ~EAA~aL--Gls~~q~~r~VI 315 (398)
+.||.+||..| |++..+..++++
T Consensus 149 g~GQT~AA~~LC~glp~~~k~~~~~ 173 (203)
T pfam06850 149 GLGQTKAALDLCTGIPADRKAHHMQ 173 (203)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 6288999999862799999888706
No 101
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=40.95 E-value=23 Score=14.84 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 879999999998346367899989689989988898
Q gi|254780171|r 279 AFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 279 AyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
.+-.+.+..++..-.--+.+||+.||+++..-+|++
T Consensus 416 ~~Er~~i~~aL~~~~gn~~~aA~~LGisR~tLyrKl 451 (457)
T PRK11361 416 RVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKL 451 (457)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999829989999999898999999999
No 102
>pfam03342 Rhabdo_M1 Rhabdovirus M1 matrix protein (M1 polymerase-associated protein).
Probab=37.96 E-value=25 Score=14.56 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=28.1
Q ss_pred HCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 346367899989689989988898768999997410
Q gi|254780171|r 291 AVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPP 326 (398)
Q Consensus 291 sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~ 326 (398)
-.|+.|..|.||||+.+..+--.+++-| +|..-|.
T Consensus 146 ~LD~DQVk~eRALGF~rGy~tA~~v~~k-~k~~~P~ 180 (219)
T pfam03342 146 PLDKDQVKAERALGFGRGYRTALNVFNK-LKGTTPS 180 (219)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHH
T ss_conf 8988998899875313308999999988-6278867
No 103
>pfam12273 RCR Chitin synthesis regulation, resistance to Congo red. RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5.
Probab=37.08 E-value=26 Score=14.47 Aligned_cols=28 Identities=14% Similarity=0.397 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4688778899999999999999864311
Q gi|254780171|r 189 IFVFSFVLGIVLSLFATRLSRHFHEKTG 216 (398)
Q Consensus 189 ~~l~~lilaiila~~l~~~a~~~~~~tg 216 (398)
+++..+++++++.+++.....+++.+.|
T Consensus 3 v~fav~i~~~~i~~f~~~~~n~RRrr~G 30 (124)
T pfam12273 3 VLFAIFIIALLILFFLTARINRRRRRRG 30 (124)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1089999999999999998739998758
No 104
>PRK07561 DNA topoisomerase I; Validated
Probab=33.77 E-value=30 Score=14.15 Aligned_cols=19 Identities=37% Similarity=0.300 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCHHHHHHH
Q ss_conf 6789998968998998889
Q gi|254780171|r 295 GQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 295 GQ~EAA~aLGls~~q~~r~ 313 (398)
=|-||++-||||..+||+.
T Consensus 290 LQQeAs~kLGfSa~~TM~i 308 (878)
T PRK07561 290 LQQEANRKLRLSARETMRC 308 (878)
T ss_pred HHHHHHHHCCCCHHHHHHH
T ss_conf 9999986159589999999
No 105
>pfam01527 Transposase_8 Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Probab=33.72 E-value=30 Score=14.14 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 97787999999999834636789998968998998889876
Q gi|254780171|r 276 YTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLL 316 (398)
Q Consensus 276 ~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIl 316 (398)
||..|..++|+-.+.. .+.-.|.|+.+|+++.+.++.+--
T Consensus 7 ys~efK~~~V~~~~~~-g~sv~~var~~gi~~~~l~~W~k~ 46 (75)
T pfam01527 7 YSEEFKARAVKESLEP-GASVSELAREHGVSPATLYKWRKK 46 (75)
T ss_pred CCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999999809-984999999989599999999999
No 106
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=33.34 E-value=30 Score=14.11 Aligned_cols=40 Identities=30% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9977879999999998346367899989689989988898
Q gi|254780171|r 275 CYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 275 l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
-...+|-.|.++.++..-.--+.+||+.||+++..-+|+.
T Consensus 464 ~a~e~~Er~lI~~AL~~~~GN~s~AAr~LGIsRstLyRk~ 503 (510)
T PRK05022 464 EATEAFQRQLIRQALAQHNGNWAAAARALELDRANLHRLA 503 (510)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999999919989999999798999999999
No 107
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=33.34 E-value=30 Score=14.10 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999997787999999999834636789998968998998889876899999741047899999975499999
Q gi|254780171|r 264 PEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVA 343 (398)
Q Consensus 264 p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~l~K~SSLa~~ 343 (398)
..+.|.++++-= -++-+|.++-=.-+.|.-.-|||-=|-|....+++.|+|.-..+. +.+-+-|..
T Consensus 160 namfA~~LAllP---rfirsiY~avh~EleKeYViaarLdGas~~~lL~~~IlPNI~~~~-----------v~EitrAls 225 (296)
T COG4171 160 NAMFAVWLALLP---RFIRSIYSAVHDELEKEYVIAARLDGASTLNLLWFAILPNITAIL-----------VTEITRALS 225 (296)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH-----------HHHHHHHHH
T ss_conf 899999999999---999999999999988778777652676618899999725127999-----------999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780171|r 344 VGFADLVSVG 353 (398)
Q Consensus 344 Ig~~dl~~~~ 353 (398)
|...|+...+
T Consensus 226 iAiLDI~ALg 235 (296)
T COG4171 226 IAILDIAALG 235 (296)
T ss_pred HHHHHHHHHH
T ss_conf 9999888861
No 108
>PRK09138 DNA topoisomerase I; Validated
Probab=30.86 E-value=33 Score=13.85 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=19.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 678999896899899888987689999
Q gi|254780171|r 295 GQMEAAIALGLTHRKATRLVLLPQAMR 321 (398)
Q Consensus 295 GQ~EAA~aLGls~~q~~r~VIlPQAlR 321 (398)
=|-||.+-||||..+||+. =|.|=
T Consensus 265 LQQeAs~kLGfSa~~TM~i---AQ~LY 288 (887)
T PRK09138 265 LQQEASRKLGFSASRTMQI---AQRLY 288 (887)
T ss_pred HHHHHHHHHCCCHHHHHHH---HHHHH
T ss_conf 9999998719989999999---99997
No 109
>TIGR02885 spore_sigF RNA polymerase sigma-F factor; InterPro: IPR014236 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . Members of this entry represent RNA polymerase sigma factor F. Within the Firmicutes, Sigma-F is specifically, and universally, a component of the endospore formation program, and is expressed in the forespore to turn on the expression of dozens of genes. It is closely related to sigma-G, which is also expressed in the forespore.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=30.31 E-value=30 Score=14.10 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHCCCHHHHHHH
Q ss_conf 636789998968998998889
Q gi|254780171|r 293 PRGQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 293 pkGQ~EAA~aLGls~~q~~r~ 313 (398)
+|-|.|=|.-||-|.-|+=|.
T Consensus 199 DkTQ~eVA~~LGISQVQVSRl 219 (231)
T TIGR02885 199 DKTQTEVAKMLGISQVQVSRL 219 (231)
T ss_pred CCHHHHHHHHCCCCCCHHHHH
T ss_conf 001799997718570012278
No 110
>PRK07941 DNA topoisomerase I; Validated
Probab=30.24 E-value=34 Score=13.79 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCHHHHHHH
Q ss_conf 36789998968998998889
Q gi|254780171|r 294 RGQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 294 kGQ~EAA~aLGls~~q~~r~ 313 (398)
.=|.||.+-||||..+||+.
T Consensus 302 TLQQeAsrkLgfSa~~TM~i 321 (933)
T PRK07941 302 TLQQEAGRKLRFSSERTMSI 321 (933)
T ss_pred HHHHHHHHCCCCCHHHHHHH
T ss_conf 99999987379699999999
No 111
>pfam11382 DUF3186 Protein of unknown function (DUF3186). This bacterial family of proteins has no known function.
Probab=29.63 E-value=35 Score=13.72 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 99999999999999999999626424
Q gi|254780171|r 98 WLAFSGMIPATIIGTLVGAGRLSANK 123 (398)
Q Consensus 98 ~va~~givlatiLG~~iGi~RlS~N~ 123 (398)
.||+.++++|.-+|+++|-.=++++-
T Consensus 8 iVSlvAVFLALavGIvlG~~~l~~~l 33 (307)
T pfam11382 8 IVSIAAVFLALAIGIVLGSGLLQENL 33 (307)
T ss_pred HHHHHHHHHHHHHHHHHCCHHCCHHH
T ss_conf 99999999999999993631111567
No 112
>PRK06599 DNA topoisomerase I; Validated
Probab=28.48 E-value=36 Score=13.60 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 63678999896899899888987689999
Q gi|254780171|r 293 PRGQMEAAIALGLTHRKATRLVLLPQAMR 321 (398)
Q Consensus 293 pkGQ~EAA~aLGls~~q~~r~VIlPQAlR 321 (398)
+.=|.||++-||||+.+||+ +=|.|=
T Consensus 264 StLQqeAs~klg~Sak~TM~---iAQ~LY 289 (776)
T PRK06599 264 SSLQQEAARKLGFSAKKTMQ---IAQKLY 289 (776)
T ss_pred HHHHHHHHHHHCCCHHHHHH---HHHHHH
T ss_conf 89999999871888999999---999998
No 113
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=27.91 E-value=37 Score=13.54 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889876899999741047
Q gi|254780171|r 311 TRLVLLPQAMRSIIPPLT 328 (398)
Q Consensus 311 ~r~VIlPQAlR~~iP~l~ 328 (398)
-|..|+-|++-..+-.+.
T Consensus 399 ~rs~i~~~g~~~~~~~m~ 416 (700)
T COG1480 399 RRSDILKSGLFLALMNML 416 (700)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 668999999999999999
No 114
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=27.86 E-value=37 Score=13.53 Aligned_cols=47 Identities=32% Similarity=0.417 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 778799999999983463678999896899899888987689999974104789999
Q gi|254780171|r 277 TAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLN 333 (398)
Q Consensus 277 taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~nq~i~ 333 (398)
|..|. .-.++||--+|||.+++...++ +.||||.=.++=.+.=.+-.
T Consensus 179 ~~GY~------~Y~~~a~PmHEAA~~~~vd~~~----~~LPq~iGm~iGg~i~~~~~ 225 (336)
T TIGR00776 179 TIGYL------VYVVVAKPMHEAAAALGVDGLS----VLLPQAIGMVIGGIIFNLKH 225 (336)
T ss_pred HHHHH------HHHHHCCCHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999------9986066267888882455456----68434888877789987566
No 115
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional
Probab=27.85 E-value=37 Score=13.53 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHCCHHHHHHHHHHCCCHHHH
Q ss_conf 834636789998968998998
Q gi|254780171|r 290 IAVPRGQMEAAIALGLTHRKA 310 (398)
Q Consensus 290 ~sVpkGQ~EAA~aLGls~~q~ 310 (398)
..-|||++-=|.|||++|..+
T Consensus 44 rpwPKgE~iIA~aLGv~P~eI 64 (90)
T PRK10344 44 RPWPKGEMIIAKALGTDPWVI 64 (90)
T ss_pred CCCCHHHHHHHHHHCCCHHHC
T ss_conf 899567999999978798880
No 116
>PRK08780 DNA topoisomerase III; Provisional
Probab=27.03 E-value=39 Score=13.44 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=20.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 3678999896899899888987689999
Q gi|254780171|r 294 RGQMEAAIALGLTHRKATRLVLLPQAMR 321 (398)
Q Consensus 294 kGQ~EAA~aLGls~~q~~r~VIlPQAlR 321 (398)
.=|.||.+-||||..+||+. =|.|=
T Consensus 268 tLQqeAs~kLg~Sak~TM~i---AQ~LY 292 (783)
T PRK08780 268 TLQQEASRKLGFTTRKTMQV---AQKLY 292 (783)
T ss_pred HHHHHHHHHCCCCHHHHHHH---HHHHH
T ss_conf 99999998719999999999---99997
No 117
>pfam06124 DUF960 Staphylococcal protein of unknown function (DUF960). This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.
Probab=26.90 E-value=31 Score=13.99 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 950146999999999987301210
Q gi|254780171|r 136 FRNIPPLVVIFFLYKSVLSVLPIP 159 (398)
Q Consensus 136 ~RN~PLLlql~fwy~~v~~~lP~~ 159 (398)
--|+|+-+|++.|-. |-..-..+
T Consensus 8 ~~~lpl~LQ~~lW~~-V~~r~~e~ 30 (97)
T pfam06124 8 ANNLPLILQHQLWQL-VAERENEQ 30 (97)
T ss_pred CCCCCHHHHHHHHHH-HHHHCCCC
T ss_conf 446868999999999-98520465
No 118
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=26.65 E-value=39 Score=13.40 Aligned_cols=52 Identities=25% Similarity=0.158 Sum_probs=39.7
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 12682148789999999999-977879999999998346367899989689989988898
Q gi|254780171|r 256 FIGGSTVSPEFMSLYIALSC-YTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 256 ~~gG~~l~p~f~a~~iaL~l-~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
-++|..-++ +.++ ..|--.++.+|.++..-.=...-+|++||.|+-.-+|+.
T Consensus 604 ~~~Gyd~T~-------a~~~~~rs~v~a~~~~~aL~~~~G~~~a~a~~LGiSrTTLWRrL 656 (658)
T TIGR02329 604 TKAGYDKTS-------ADSLRERSRVEALAVRAALERFQGDRAAAAKALGISRTTLWRRL 656 (658)
T ss_pred CCCCCCCCC-------HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHH
T ss_conf 246776677-------47773420433576899998727896899854276424577761
No 119
>TIGR01402 fliQ flagellar biosynthetic protein FliQ; InterPro: IPR006305 These sequences represent FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participate in bacterial type III protein secretion systems. ; GO: 0016021 integral to membrane, 0019861 flagellum.
Probab=26.22 E-value=40 Score=13.35 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HCCCHHHHHHHHHHHHHHHH
Q ss_conf 526999999999999999999999999999999996------------------------26424678779999999950
Q gi|254780171|r 83 SSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR------------------------LSANKLVAWICRVYVEVFRN 138 (398)
Q Consensus 83 ~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R------------------------lS~N~ll~~la~~YVE~~RN 138 (398)
|+-.+-...++-|||..+.==.+.|.+.|.++++.. +-+.|-.+++.....|+|.|
T Consensus 4 ~~~l~l~~~a~~~~L~l~aP~L~~aL~VGLvIsIfQA~TqIqE~TLsF~PKii~~ll~l~l~gpWM~~~l~dF~~~~f~~ 83 (88)
T TIGR01402 4 ETVLDLGREALWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPKIIAVLLALILLGPWMLQKLLDFTREIFER 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999989999999999999999998788576886698999999999998589999899999999998
Q ss_pred HH
Q ss_conf 14
Q gi|254780171|r 139 IP 140 (398)
Q Consensus 139 ~P 140 (398)
+|
T Consensus 84 i~ 85 (88)
T TIGR01402 84 IP 85 (88)
T ss_pred HH
T ss_conf 30
No 120
>KOG0860 consensus
Probab=24.76 E-value=43 Score=13.19 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 233110332038899999999999999999999
Q gi|254780171|r 11 RYFSRMKFLYDMRVHNISVQIILALLLTVIFLW 43 (398)
Q Consensus 11 ~~~~~~~~~~d~~~~~~~~Q~~~~~~~~~~~~~ 43 (398)
.+..+--+|.|.|.+-++.-++++++++.+++.
T Consensus 81 ~klkrk~wWkn~Km~~il~~v~~i~l~iiii~~ 113 (116)
T KOG0860 81 VKLKRKMWWKNCKMRIILGLVIIILLVVIIIYI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999987899999999999999999999
No 121
>pfam01080 Presenilin Presenilin. Mutations in presenilin-1 are a major cause of early onset Alzheimer's disease. It has been found that presenilin-1 binds to beta-catenin in-vivo. This family also contains SPE proteins from C.elegans.
Probab=24.61 E-value=43 Score=13.17 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=65.4
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHCCCHHHHHHHH
Q ss_conf 121388998443754223568652699999999999999999999999999999----------9996264246787799
Q gi|254780171|r 61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLV----------GAGRLSANKLVAWICR 130 (398)
Q Consensus 61 f~FL~~~agf~I~~~~i~y~~~~sy~~a~~vGl~NTl~va~~givlatiLG~~i----------Gi~RlS~N~ll~~la~ 130 (398)
-+|..+.++.-+- ++ ..+.+||-++-++-.++|++..-.+ |+..|++-+++ |-+.+|+--++-.++.
T Consensus 34 ~s~~~~~~~~lvY-~~-~~~~~~s~g~k~~~sl~Nali~v~v-I~vmTf~LvlLYkyrc~k~I~gwL~~Ss~llLf~~~~ 110 (403)
T pfam01080 34 VSFYEQNNGSLLY-TP-FHSFTPTTGNKLLDSLINTLIMISV-LVVMTFLLVVFYKYRFYKIIHGWLILSSLLLLFLFSY 110 (403)
T ss_pred CCCCCCCCCCEEE-EE-CCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4544568860477-73-6777885688999999999999999-9999999999999738999999999999999999999
Q ss_pred HHHHHH-H--HHHH---HHHHHHHHHHHHHHC
Q ss_conf 999999-5--0146---999999999987301
Q gi|254780171|r 131 VYVEVF-R--NIPP---LVVIFFLYKSVLSVL 156 (398)
Q Consensus 131 ~YVE~~-R--N~PL---Llql~fwy~~v~~~l 156 (398)
.|.+-+ | |+|+ -+-++.|-|++...+
T Consensus 111 ~~~~~vl~~~nip~D~iT~~~~lwNFgvvG~~ 142 (403)
T pfam01080 111 IYLQEVFKAYNVPMDYPTVFLLIWNFGVVGMM 142 (403)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999938853888999999987635510
No 122
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry comprises of the nitrate transport permease in bacteria, the gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016021 integral to membrane.
Probab=24.53 E-value=43 Score=13.16 Aligned_cols=186 Identities=20% Similarity=0.270 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
Q ss_conf 99999999999999999999999999999962642467877999999995014699999999998730121034441037
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPF 167 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~ 167 (398)
-+..-...++.=...|-..|.+.|..+|+.==.+..+.+.+-- -.++.|.+|.|-++-.=-.+.-+.-|.
T Consensus 14 Gl~~q~~~sl~rva~G~~~aa~~Gi~~G~~~G~~~~~~~~ldP-~~q~lr~~~PlaW~Pi~l~~~~~~~~~--------- 83 (203)
T TIGR01183 14 GLFLQILASLTRVAVGYLLAAIVGIAVGILIGLSKLLNKALDP-IFQVLRTVPPLAWLPIALAAFQDAQPA--------- 83 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHCCCCC---------
T ss_conf 3799999999999999999999999999997468999874208-999997515345788999998416863---------
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 20352010003545355670046887788999999999999998643112233204554210103558999765444332
Q gi|254780171|r 168 GMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 (398)
Q Consensus 168 ~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 247 (398)
...+
T Consensus 84 ---------------------------------------------------------aifv------------------- 87 (203)
T TIGR01183 84 ---------------------------------------------------------AIFV------------------- 87 (203)
T ss_pred ---------------------------------------------------------EEEE-------------------
T ss_conf ---------------------------------------------------------1311-------------------
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001311126821487899999999999778799999999983463678999896899899888987689999974104
Q gi|254780171|r 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398)
Q Consensus 248 ~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398)
-|..++.-..+||+ -|++.+|+.-.+-||-|-||+.+-+-.|++|.++..+.-.+
T Consensus 88 -----------------ifita~WPi~int~--------~G~~~~P~dy~nv~rvl~ls~~~y~~~~~~P~~~Py~f~Gl 142 (203)
T TIGR01183 88 -----------------IFITAIWPIIINTA--------VGVQQIPQDYNNVARVLKLSKSDYLLKVLLPAAVPYIFTGL 142 (203)
T ss_pred -----------------HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----------------24877989998766--------66763117789999999987888888777544456898658
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 789999997549999999999999999998313775899999999999999-9999999
Q gi|254780171|r 328 TSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS-IMIALFM 385 (398)
Q Consensus 328 ~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~is-l~iS~~~ 385 (398)
--. +.+---.-.+.-+-..|+...+--+-...-+....=.+.+++|.-+. +.+..+.
T Consensus 143 ~i~-~Gl~Wlai~aae~~~~~~~GiGffiWday~~~~~s~~ila~~y~G~vGl~l~~~v 200 (203)
T TIGR01183 143 RIA-IGLSWLAIVAAEMLIGGIVGIGFFIWDAYNSGSVSEIILAIIYVGLVGLLLDRLV 200 (203)
T ss_pred HHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999-9999999999999860543012432222301430479999999999999999998
No 123
>TIGR02846 spore_sigmaK RNA polymerase sigma-K factor; InterPro: IPR014209 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . The sporulation-specific transcription factor sigma-K (also called sigma-27) is expressed in the mother cell compartment of endospore-forming bacteria such as Bacillus subtilis. Like its close homologue sigma-E (sigma-29, see IPR014200 from INTERPRO), also specific to the mother cell compartment, it must be activated by a proteolytic cleavage. Note: that in Bacillus subtilis (and apparently also in Clostridium tetani), but not in other endospore forming species such as Bacillus anthracis, the sigK gene is generated by a non-germline (mother cell only) chromosomal rearrangement that recombines coding regions for the N-terminal and C-terminal regions of sigma-K .; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=24.34 E-value=43 Score=13.14 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=20.0
Q ss_pred HHHHH-HCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 99998-3463678999896899899888
Q gi|254780171|r 286 RSGLI-AVPRGQMEAAIALGLTHRKATR 312 (398)
Q Consensus 286 R~gI~-sVpkGQ~EAA~aLGls~~q~~r 312 (398)
|=|+. .=+|-|+|=|+.||.||..+=|
T Consensus 187 RyGL~~~~~~tQREIA~~LgISRSYVSR 214 (228)
T TIGR02846 187 RYGLKDGREKTQREIAKILGISRSYVSR 214 (228)
T ss_pred HCCCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 4366888954178998770865004548
No 124
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=23.55 E-value=45 Score=13.05 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 977879999999998346367899989689989988898
Q gi|254780171|r 276 YTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 276 ~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
....|-.|+++.....-+ +..+||+.||+|+...+|++
T Consensus 464 ~~~~~Er~~l~~l~~~~~-~~~kaAk~LGISrttL~~Kl 501 (513)
T PRK10820 464 ITSRFERSVLTQLYRNYP-STRKLAKRLGVSHTAIANKL 501 (513)
T ss_pred HHHHHHHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999998788-99999999799899999999
No 125
>pfam03672 UPF0154 Uncharacterized protein family (UPF0154). This family contains a set of short bacterial proteins of unknown function.
Probab=23.16 E-value=45 Score=13.01 Aligned_cols=15 Identities=27% Similarity=0.715 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 877889999999999
Q gi|254780171|r 192 FSFVLGIVLSLFATR 206 (398)
Q Consensus 192 ~~lilaiila~~l~~ 206 (398)
+++++|.++++++++
T Consensus 5 l~ll~G~~~Gff~ar 19 (64)
T pfam03672 5 LCLLAGFILGYFISR 19 (64)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999998999999999
No 126
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=21.82 E-value=35 Score=13.68 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 78779999999950
Q gi|254780171|r 125 VAWICRVYVEVFRN 138 (398)
Q Consensus 125 l~~la~~YVE~~RN 138 (398)
-++++..|-|++++
T Consensus 32 P~Rvak~~~e~~~G 45 (186)
T PRK09347 32 PKRVAKMYEELFSG 45 (186)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998554
No 127
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=21.55 E-value=49 Score=12.80 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 3678999896899899888987689999
Q gi|254780171|r 294 RGQMEAAIALGLTHRKATRLVLLPQAMR 321 (398)
Q Consensus 294 kGQ~EAA~aLGls~~q~~r~VIlPQAlR 321 (398)
.=|.||++-||||..+||+. =|.|=
T Consensus 275 TLQqeAs~klGfSakkTM~i---AQ~LY 299 (864)
T PRK06319 275 TLQQEASRHFRFSSSRTMNI---AQTLY 299 (864)
T ss_pred HHHHHHHHHCCCCHHHHHHH---HHHHH
T ss_conf 99999987559899999999---99986
No 128
>KOG3484 consensus
Probab=21.53 E-value=16 Score=15.78 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8898768999997410
Q gi|254780171|r 311 TRLVLLPQAMRSIIPP 326 (398)
Q Consensus 311 ~r~VIlPQAlR~~iP~ 326 (398)
+|+|++|+++-..+|-
T Consensus 19 YRHV~Lpk~~~K~vPk 34 (91)
T KOG3484 19 YRHVMLPKEVAKLVPK 34 (91)
T ss_pred EEEEECCHHHHHHCCC
T ss_conf 6776468999963872
No 129
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=21.45 E-value=50 Score=12.79 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 6367899989689989988898
Q gi|254780171|r 293 PRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 293 pkGQ~EAA~aLGls~~q~~r~V 314 (398)
=+.+.|||+.+|.++...-+++
T Consensus 17 f~Si~~aak~l~~~~~~I~~~l 38 (53)
T smart00497 17 FSSIREAAKYLGISHSSISKYL 38 (53)
T ss_pred HHHHHHHHHHHCCCCCCHHHHH
T ss_conf 7879999998588832388870
No 130
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=20.80 E-value=39 Score=13.42 Aligned_cols=15 Identities=0% Similarity=-0.110 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 787799999999501
Q gi|254780171|r 125 VAWICRVYVEVFRNI 139 (398)
Q Consensus 125 l~~la~~YVE~~RN~ 139 (398)
-++++..|-|+++.-
T Consensus 29 P~Rvak~~~e~~~G~ 43 (185)
T PRK12606 29 PQRAAKAMQYLCDGY 43 (185)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999995686
No 131
>TIGR01051 topA_bact DNA topoisomerase I; InterPro: IPR005733 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry describes topoisomerase I from bacteria, which is more closely related to archaeal than to eukaryotic topoisomerase I . Topoisomerase I is the major enzyme for relaxing negatively supercoiled DNA, and its presence is balanced by reverse gyrase, which can introduce negative supercoils. Prokaryotic topoisomerase I folds in an unusual way to give 4 distinct domains, enclosing a hole large enough to accommodate a double-stranded DNA segment. A tyrosine at the active site, which lies at the interface of 2 domains, is involved in transient breakage of a DNA strand, and the formation of a covalent protein-DNA intermediate through a 5-phosphotyrosine linkage. The structure reveals a plausible mechanism by which this and related enzymes could catalyse the passage of one DNA strand through a transient break in another strand . Topoisomerase I require Mg2+ as a cofactor for catalysis to take place. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003917 DNA topoisomerase type I activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=20.61 E-value=52 Score=12.68 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=15.8
Q ss_pred HHHHHHHHCCCHHHHHH
Q ss_conf 78999896899899888
Q gi|254780171|r 296 QMEAAIALGLTHRKATR 312 (398)
Q Consensus 296 Q~EAA~aLGls~~q~~r 312 (398)
|-||++=||+|...||+
T Consensus 306 QQeA~~KLGFSa~kTM~ 322 (688)
T TIGR01051 306 QQEASRKLGFSAKKTMM 322 (688)
T ss_pred HHHHHHHCCCCCCHHHH
T ss_conf 99887753795102655
No 132
>TIGR01057 topA_arch DNA topoisomerase I; InterPro: IPR005739 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry describes topoisomerase I from archaea, which is more closely related to bacterial than to eukaryotic topoisomerase I . Topoisomerase I is the major enzyme for relaxing negatively supercoiled DNA, and its presence is balanced by reverse gyrase, which can introduce negative supercoils. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=20.59 E-value=52 Score=12.68 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.6
Q ss_pred HHHHHHHHHHCCCHHHHHH
Q ss_conf 3678999896899899888
Q gi|254780171|r 294 RGQMEAAIALGLTHRKATR 312 (398)
Q Consensus 294 kGQ~EAA~aLGls~~q~~r 312 (398)
.=|.||=+.+|+||.+|..
T Consensus 286 tLQ~EAy~~fG~sPk~Tq~ 304 (637)
T TIGR01057 286 TLQREAYRVFGFSPKKTQE 304 (637)
T ss_pred HHHHHHHHHCCCCCHHHHH
T ss_conf 2589999860799644689
No 133
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=20.31 E-value=28 Score=14.32 Aligned_cols=14 Identities=57% Similarity=0.937 Sum_probs=11.9
Q ss_pred CCCCCHHCCCCCCC
Q ss_conf 87781213889984
Q gi|254780171|r 57 LSLGIGFLSERAGF 70 (398)
Q Consensus 57 i~~gf~FL~~~agf 70 (398)
|..|+|||+|-|.|
T Consensus 78 iHPGYGFLSENA~F 91 (451)
T TIGR00514 78 IHPGYGFLSENADF 91 (451)
T ss_pred ECCCCCHHHHHHHH
T ss_conf 62887734431247
Done!