Query gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 398
No_of_seqs 235 out of 3177
Neff 6.6
Searched_HMMs 33803
Date Mon May 23 02:07:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780171.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3dhw_A D-methionine transport 99.9 5.3E-26 1.6E-30 176.8 14.4 206 82-391 2-217 (217)
2 >3d31_C Sulfate/molybdate ABC 99.9 2.4E-20 7E-25 142.4 19.4 217 88-398 79-295 (295)
3 >2onk_C Molybdate/tungstate AB 99.7 1.4E-15 4.1E-20 113.3 18.6 167 88-350 1-167 (181)
4 >2r6g_F Maltose transport syst 99.6 1.5E-13 4.5E-18 100.8 13.4 140 88-345 8-147 (152)
5 >2r6g_G Maltose transport syst 99.5 3.4E-13 1E-17 98.7 13.2 157 89-345 9-165 (172)
6 >1umq_A Photosynthetic apparat 80.4 3.3 9.7E-05 19.6 4.7 37 278-314 39-75 (81)
7 >1eto_A FIS, factor for invers 77.6 4.1 0.00012 19.0 6.1 39 276-314 9-47 (53)
8 >1ojl_A Transcriptional regula 77.4 4.1 0.00012 19.0 4.8 37 278-314 13-49 (51)
9 >1ntc_A Protein (nitrogen regu 77.0 4.2 0.00012 18.9 5.5 41 274-314 45-85 (91)
10 >2auw_A Hypothetical protein N 71.8 5.7 0.00017 18.1 4.1 31 283-313 4-34 (81)
11 >2ict_A Antitoxin HIGA; helix- 66.9 7.2 0.00021 17.5 4.2 32 282-313 10-41 (46)
12 >3e7l_A Transcriptional regula 64.1 8.2 0.00024 17.2 6.0 40 275-314 14-53 (63)
13 >2jwa_A Receptor tyrosine-prot 61.3 9.2 0.00027 16.8 4.1 23 95-117 12-34 (44)
14 >2w7n_A TRFB transcriptional r 52.7 12 0.00035 16.2 2.8 30 283-313 25-54 (73)
15 >1g2h_A Transcriptional regula 48.0 12 0.00036 16.1 2.3 34 280-314 21-54 (61)
16 >2cw1_A SN4M; lambda CRO fold, 41.9 11 0.00034 16.3 1.3 29 292-326 12-40 (65)
17 >1iij_A ERBB-2 receptor protei 41.2 13 0.00039 15.9 1.5 24 94-117 7-30 (35)
18 >1xwr_A Regulatory protein CII 34.8 25 0.00073 14.2 2.3 29 293-321 23-53 (62)
19 >3bz1_D Photosystem II reactio 32.1 22 0.00066 14.5 1.5 15 294-308 97-111 (111)
20 >1yfn_E Sigma-E factor negativ 27.1 33 0.00098 13.5 2.0 26 7-34 3-28 (32)
21 >3cec_A Putative antidote prot 26.9 34 0.00099 13.4 4.1 36 279-314 17-52 (56)
22 >1zs4_A Regulatory protein CII 26.8 34 0.00099 13.4 2.3 22 293-314 24-45 (62)
23 >3bz1_A Photosystem Q(B) prote 26.1 22 0.00064 14.6 0.6 15 294-308 100-114 (114)
24 >3f8t_A Predicted ATPase invol 25.9 21 0.00063 14.6 0.5 36 278-313 361-396 (398)
25 >1gku_B Reverse gyrase, TOP-RG 23.8 38 0.0011 13.1 2.2 19 295-313 7-25 (137)
26 >2cob_A LCOR protein; MLR2, KI 23.2 39 0.0012 13.0 3.2 36 279-314 13-51 (70)
No 1
>>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:)
Probab=99.94 E-value=5.3e-26 Score=176.77 Aligned_cols=206 Identities=22% Similarity=0.316 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6526999999999999999999999999999999996-------264246787799999999501469999999999873
Q gi|254780171|r 82 DSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGR-------LSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLS 154 (398)
Q Consensus 82 ~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~R-------lS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~ 154 (398)
+++..+.++.++.||+++++.+.++++++|+.+|+.- .-.+..+..+.....+.++.+|.++++.+.+.....
T Consensus 2 s~~~~~~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T 3dhw_A 2 SEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRV 81 (217)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87899999999999999999999999999999999999987344320189999999999999999999999999986455
Q ss_pred HCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHH
Q ss_conf 01210344410372035201000354535567004688778899999999999999864311223320455421010355
Q gi|254780171|r 155 VLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPT 234 (398)
Q Consensus 155 ~lP~~~~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~ 234 (398)
..+
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (217)
T 3dhw_A 82 IVG----------------------------------------------------------------------------- 84 (217)
T ss_dssp TTC-----------------------------------------------------------------------------
T ss_pred HCC-----------------------------------------------------------------------------
T ss_conf 204-----------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89997654443322100131112682148789999999999977879999999998346367899989689989988898
Q gi|254780171|r 235 LVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 235 l~~~~~~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
. ...+.+.++++++++.+|+.+++|++++++|++|.|||+++|+|++|++++|
T Consensus 85 -------------------------~--~~~~~~~ii~~~~~~~~~i~~~~~~~l~~i~~~~~eaA~~lG~s~~q~~~~v 137 (217)
T 3dhw_A 85 -------------------------T--SIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKV 137 (217)
T ss_dssp -------------------------C--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHT
T ss_pred -------------------------C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf -------------------------5--3018899898899724689899998888615027788860698742142673
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7689999974104789999997549999999999999999998313775---8999999999999999999999999678
Q gi|254780171|r 315 LLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQA---IEIILIWMFIYLSLSIMIALFMNRLNAK 391 (398)
Q Consensus 315 IlPQAlR~~iP~l~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~---~e~~~i~~~~Yl~isl~iS~~~n~~~rr 391 (398)
++||+++.++|++.+.+...+|+++.+..+|.+|+...+.....++++. .....+.++.++++++....+.+++|||
T Consensus 138 ~lP~~~p~i~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~rR 217 (217)
T 3dhw_A 138 LLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCCHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 09976999999999999999999999999987599999999999750189999999999999999999999999985699
No 2
>>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:)
Probab=99.88 E-value=2.4e-20 Score=142.36 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
Q ss_conf 99999999999999999999999999999962642467877999999995014699999999998730121034441037
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPF 167 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~ 167 (398)
.++.++.||+.+++.+.++++++|+.+|...-..+.-.++.......+-.-+|..+-.+.|+.........
T Consensus 79 ~~~~~l~~Tl~~~~~~~~~~~~ig~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 149 (295)
T 3d31_C 79 SVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLI--------- 149 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------
T ss_conf 99999999999999999999999999999999636647999999999999999999999999999726632---------
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 20352010003545355670046887788999999999999998643112233204554210103558999765444332
Q gi|254780171|r 168 GMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 (398)
Q Consensus 168 ~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 247 (398)
.
T Consensus 150 -------------------------------------------------------------------------------~ 150 (295)
T 3d31_C 150 -------------------------------------------------------------------------------G 150 (295)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------C
T ss_conf -------------------------------------------------------------------------------4
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001311126821487899999999999778799999999983463678999896899899888987689999974104
Q gi|254780171|r 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398)
Q Consensus 248 ~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398)
.+ ..........+...+++.+++...|+..+++++++++|+++.|||+++|.+++|++++|++||+.+.++...
T Consensus 151 ~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~ 224 (295)
T 3d31_C 151 EP------LESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGS 224 (295)
T ss_dssp GG------GTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred CH------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 30------332167123999999999999999999999999975050589999876998262127746996999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78999999754999999999999999999831377589999999999999999999999996787430479
Q gi|254780171|r 328 TSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398 (398)
Q Consensus 328 ~nq~i~l~K~SSLa~~Ig~~dl~~~~~~~~~~t~~~~e~~~i~~~~Yl~isl~iS~~~n~~~rr~~l~er~ 398 (398)
.-.++..+++.+....+|-.+.+....................+.+++++++.+..++++++||....||.
T Consensus 225 ~l~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~r~~~~~r~ 295 (295)
T 3d31_C 225 VMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIRTLSAGWSIYDRD 295 (295)
T ss_dssp HHHHHHHHTCCHHHHHHHCTTCCHHHHHHHHHHHSTTTTTHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999589731999999999944899999999999999999999999999760364579
No 3
>>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (C:69-249)
Probab=99.73 E-value=1.4e-15 Score=113.31 Aligned_cols=167 Identities=16% Similarity=0.109 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
Q ss_conf 99999999999999999999999999999962642467877999999995014699999999998730121034441037
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPF 167 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~ 167 (398)
+++.++.||+.+++++.++++++|+.+|...-..++-.++..+..+..-+-+|..+-.+.|++........
T Consensus 1 ~~~~~l~~Tl~~a~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~--------- 71 (181)
T 2onk_C 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLI--------- 71 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC---------
T ss_conf 89999999999999999999999999999886415631589999998741210122233310023553222---------
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 20352010003545355670046887788999999999999998643112233204554210103558999765444332
Q gi|254780171|r 168 GMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 (398)
Q Consensus 168 ~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 247 (398)
.+.
T Consensus 72 ----------~~~------------------------------------------------------------------- 74 (181)
T 2onk_C 72 ----------GSF------------------------------------------------------------------- 74 (181)
T ss_dssp ----------TTT-------------------------------------------------------------------
T ss_pred ----------CCC-------------------------------------------------------------------
T ss_conf ----------221-------------------------------------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001311126821487899999999999778799999999983463678999896899899888987689999974104
Q gi|254780171|r 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398)
Q Consensus 248 ~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398)
........+.+.+++.+...-.|...+++++++++||.+.|||+++|.|++|++|+|++|++.+.+....
T Consensus 75 ----------~~~~~~~~~~~~il~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Gas~~q~~~~I~lP~~~p~i~~~~ 144 (181)
T 2onk_C 75 ----------SPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGA 144 (181)
T ss_dssp ----------CSSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred ----------CCCCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf ----------2345444332022101133333312220000223542456454326998434006344866276326751
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999754999999999999
Q gi|254780171|r 328 TSQYLNLLKNSSLAVAVGFADLV 350 (398)
Q Consensus 328 ~nq~i~l~K~SSLa~~Ig~~dl~ 350 (398)
.-+++..+++.+.+..+|-.+.+
T Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~ 167 (181)
T 2onk_C 145 IMSWARGISEFGAVVVIAYYPMI 167 (181)
T ss_dssp HHHHHHHHHCCHHHHTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 88887699998888743289850
No 4
>>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:269-326,F:360-453)
Probab=99.55 E-value=1.5e-13 Score=100.83 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
Q ss_conf 99999999999999999999999999999962642467877999999995014699999999998730121034441037
Q gi|254780171|r 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPF 167 (398)
Q Consensus 88 a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~ 167 (398)
.++.-+.||+.+++...++++++|+..|-.---.+..-|+ ..|.....|+.+-.....
T Consensus 8 ~~~~~~~~tl~~a~~~~~~~~~~g~~~a~l~~r~~f~gr~----~l~~~~~lp~~~p~~v~~------------------ 65 (152)
T 2r6g_F 8 PFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKA----VYRVLLILPYAAWFSDPT------------------ 65 (152)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHH----HHHHHTTHHHHCTTTSHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHCHHCCCH------------------
T ss_conf 9999999999999999999999999999998742246211----413532388880204821------------------
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 20352010003545355670046887788999999999999998643112233204554210103558999765444332
Q gi|254780171|r 168 GMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 (398)
Q Consensus 168 ~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 247 (398)
T Consensus 66 -------------------------------------------------------------------------------- 65 (152)
T 2r6g_F 66 -------------------------------------------------------------------------------- 65 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001311126821487899999999999778799999999983463678999896899899888987689999974104
Q gi|254780171|r 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPL 327 (398)
Q Consensus 248 ~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l 327 (398)
-.+.+.+++..+.+.+|....+|++++++|+.+.|||+++|.|++|++|+|++|++.+.+++..
T Consensus 66 ----------------~~~~~li~a~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~lGas~~~~~~~I~lP~~~p~il~~~ 129 (152)
T 2r6g_F 66 ----------------TARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLM 129 (152)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHEEEEEEHHHHHHHHHHH
T ss_conf ----------------3222233345555322445544432024427899999974999401131463164789999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 789999997549999999
Q gi|254780171|r 328 TSQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 328 ~nq~i~l~K~SSLa~~Ig 345 (398)
...++..+|+.+.+..+|
T Consensus 130 ~l~f~~~~~e~~~~~~l~ 147 (152)
T 2r6g_F 130 IASFAFNFNNFVLIQLLT 147 (152)
T ss_dssp HHHHHHHHTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999878999994
No 5
>>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:73-244)
Probab=99.52 E-value=3.4e-13 Score=98.72 Aligned_cols=157 Identities=15% Similarity=0.033 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 99999999999999999999999999999626424678779999999950146999999999987301210344410372
Q gi|254780171|r 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFG 168 (398)
Q Consensus 89 ~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~~~~~~~~~ 168 (398)
++..+.||+.+++++.++++++|+.+|..=--.+.-.++.-.....+-..+|..+-.+.|+...-..-
T Consensus 9 ~~~~l~~Sl~~a~~~~~i~~~ig~~~a~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~------------ 76 (172)
T 2r6g_G 9 VLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLG------------ 76 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHEEEHHEECCCCC------------
T ss_conf 99998648999999999998631033333320441478899987623321331120110310024456------------
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 03520100035453556700468877889999999999999986431122332045542101035589997654443322
Q gi|254780171|r 169 MFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDK 248 (398)
Q Consensus 169 ~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 248 (398)
..
T Consensus 77 -----------------------------------------------------------------------------~~- 78 (172)
T 2r6g_G 77 -----------------------------------------------------------------------------EY- 78 (172)
T ss_dssp -----------------------------------------------------------------------------HH-
T ss_pred -----------------------------------------------------------------------------CC-
T ss_conf -----------------------------------------------------------------------------51-
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10013111268214878999999999997787999999999834636789998968998998889876899999741047
Q gi|254780171|r 249 PVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLT 328 (398)
Q Consensus 249 p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~l~ 328 (398)
+........+++++.+.....|..-..+++++++|+.+.|||+++|.+++|++++|++|++.+.+.....
T Consensus 79 ----------~~~~~~~~~~~ii~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~lGas~~~~f~~V~lP~~~p~i~~~~~ 148 (172)
T 2r6g_G 79 ----------IPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFI 148 (172)
T ss_dssp ----------STTSSTTSHHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ----------CCCCCCCCEEEEEECCCCCEEEEEEEEEHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------2222467500000003551154211000364133056555677549407777888889876546777887
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999997549999999
Q gi|254780171|r 329 SQYLNLLKNSSLAVAVG 345 (398)
Q Consensus 329 nq~i~l~K~SSLa~~Ig 345 (398)
-.++..++|.+.+..++
T Consensus 149 l~f~~~~~~~~~~~~l~ 165 (172)
T 2r6g_G 149 LSFIAAITEVPVASLLL 165 (172)
T ss_dssp HHHHHHHTCCHHHHHHC
T ss_pred HHHHHHCCEEECCEECC
T ss_conf 76443232300340114
No 6
>>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} (A:)
Probab=80.37 E-value=3.3 Score=19.58 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 7879999999998346367899989689989988898
Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
..+-.|.++.+++.-..-+.+||+.||+|+.+.+|++
T Consensus 39 ~~~E~~~I~~aL~~~~gn~~~aA~~Lgisr~TL~rkl 75 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999998309999999698999999999
No 7
>>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98)
Probab=77.62 E-value=4.1 Score=19.02 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 977879999999998346367899989689989988898
Q gi|254780171|r 276 YTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 276 ~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
.-..+-.+.++..++.-.--+.+||+.||+++.+.+|++
T Consensus 9 ~~~~~E~~~I~~aL~~~~gn~s~aA~~Lgisr~tL~rkl 47 (53)
T 1eto_A 9 VLAEVEQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKL 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999999929989999999798999999999
No 8
>>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304)
Probab=77.42 E-value=4.1 Score=18.99 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 7879999999998346367899989689989988898
Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
..+-.+.++..++.-+--+.+||+.||+++...+|++
T Consensus 13 ~~~E~~~I~~aL~~~~Gn~~~aA~~LGisr~TL~rkl 49 (51)
T 1ojl_A 13 VDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 49 (51)
T ss_dssp HHHHHHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999929989999999888999999986
No 9
>>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:)
Probab=77.02 E-value=4.2 Score=18.92 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99977879999999998346367899989689989988898
Q gi|254780171|r 274 SCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 274 ~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
.-....+-.+.++..+..-..-+.+||+.||+++...+|+.
T Consensus 45 ~~~~~~~e~~~i~~~L~~~~gn~~~aA~~LGisR~TL~rkl 85 (91)
T 1ntc_A 45 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999999999949949999999798999999999
No 10
>>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170)
Probab=71.81 E-value=5.7 Score=18.12 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=22.7
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999834636789998968998998889
Q gi|254780171|r 283 EIVRSGLIAVPRGQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 283 EivR~gI~sVpkGQ~EAA~aLGls~~q~~r~ 313 (398)
|-+++=.....-.|.+||.+||+|++.+-.+
T Consensus 4 e~F~~W~~r~gLsl~~AAeALGisrRmi~YY 34 (81)
T 2auw_A 4 EXFGDWXHRNNLSLTTAAEALGISRRXVSYY 34 (81)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999985999999999949999999999
No 11
>>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46)
Probab=66.93 E-value=7.2 Score=17.49 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999834636789998968998998889
Q gi|254780171|r 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 282 aEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~ 313 (398)
.|++|-=++...-.|.|.|+.+|+|+...-+.
T Consensus 10 Ge~L~E~Le~~gis~~~lA~~lgvs~~~is~i 41 (46)
T 2ict_A 10 GDIIQESLDELNVSLREFARAXEIAPSTASRL 41 (46)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999999997999999999997778999999
No 12
>>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:)
Probab=64.06 E-value=8.2 Score=17.15 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9977879999999998346367899989689989988898
Q gi|254780171|r 275 CYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 275 l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
-....+-.|.+...++.-.--+.+||+.||+++.+.++++
T Consensus 14 ~~~~~~Er~~i~~aL~~~~gn~~~aA~~Lgisr~tL~~kl 53 (63)
T 3e7l_A 14 EAKKEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999999919989999999895999999999
No 13
>>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} (A:)
Probab=61.33 E-value=9.2 Score=16.85 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999
Q gi|254780171|r 95 NTFWLAFSGMIPATIIGTLVGAG 117 (398)
Q Consensus 95 NTl~va~~givlatiLG~~iGi~ 117 (398)
..+.-+++|+.++.++|+++|+.
T Consensus 12 tsiia~vvgill~~v~g~v~gil 34 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGIL 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999
No 14
>>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} (A:1-73)
Probab=52.70 E-value=12 Score=16.21 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=21.7
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999999834636789998968998998889
Q gi|254780171|r 283 EIVRSGLIAVPRGQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 283 EivR~gI~sVpkGQ~EAA~aLGls~~q~~r~ 313 (398)
|+-|+ ++==.++|.|+|.++|+|+...-..
T Consensus 25 ~iAR~-VLV~G~~~~evA~~~Glsrq~V~~~ 54 (73)
T 2w7n_A 25 EIARG-VLVDGKPQATFATSLGLTRGAVSQA 54 (73)
T ss_dssp HHHHH-HHTTCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHH-HHHCCCHHHHHHHHHCCHHHHHHHH
T ss_conf 99999-9968820999999967309899999
No 15
>>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:)
Probab=48.04 E-value=12 Score=16.10 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 79999999998346367899989689989988898
Q gi|254780171|r 280 FIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 280 yiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
|-.+.+..++.. .....+||+.||+++...+|++
T Consensus 21 ~Er~~I~~aL~~-~gn~~~aA~~Lgisr~tL~rkl 54 (61)
T 1g2h_A 21 YEAQVLKLFYAE-YPSTRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp HHHHHHHHHHHH-SCSHHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999998403-8738999999586189999899
No 16
>>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} (A:)
Probab=41.91 E-value=11 Score=16.30 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46367899989689989988898768999997410
Q gi|254780171|r 292 VPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPP 326 (398)
Q Consensus 292 VpkGQ~EAA~aLGls~~q~~r~VIlPQAlR~~iP~ 326 (398)
-+|.|--||+|||+|..- +...+++-+|-
T Consensus 12 edknqeyaaralglsqkl------ieevlkrglpv 40 (65)
T 2cw1_A 12 EDKNQEYAARALGLSQKL------IEEVLKRGLPV 40 (65)
T ss_dssp TTSCHHHHHHHSSSCHHH------HHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCHHHH------HHHHHHCCCCE
T ss_conf 600288999984116999------99999759956
No 17
>>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} (A:)
Probab=41.19 E-value=13 Score=15.92 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254780171|r 94 VNTFWLAFSGMIPATIIGTLVGAG 117 (398)
Q Consensus 94 ~NTl~va~~givlatiLG~~iGi~ 117 (398)
...+.-+++||.+..++|.++|+.
T Consensus 7 vtsiia~vvgill~~v~g~v~gil 30 (35)
T 1iij_A 7 VTFIIATVVGVLLFLILVVVVGIL 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 568599999999999999998861
No 18
>>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} (A:1-62)
Probab=34.75 E-value=25 Score=14.25 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHCCCHHHHHHHH--HHHHHHH
Q ss_conf 6367899989689989988898--7689999
Q gi|254780171|r 293 PRGQMEAAIALGLTHRKATRLV--LLPQAMR 321 (398)
Q Consensus 293 pkGQ~EAA~aLGls~~q~~r~V--IlPQAlR 321 (398)
++||.-.|+++|..+.|.-|.- -+||.-+
T Consensus 23 ~~gq~~vAe~iGv~eStISR~k~~~~~~~~~ 53 (62)
T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRWKRDWIPKFSM 53 (62)
T ss_dssp HHCHHHHHHHHTCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9833548998298798851443137999999
No 19
>>3bz1_D Photosystem II reaction center D2 protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1izl_D* 1s5l_D* 1w5c_D* 2axt_D* 3bz2_D* 3a0b_D* 3a0h_D* (D:31-141)
Probab=32.07 E-value=22 Score=14.50 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=13.2
Q ss_pred HHHHHHHHHHCCCHH
Q ss_conf 367899989689989
Q gi|254780171|r 294 RGQMEAAIALGLTHR 308 (398)
Q Consensus 294 kGQ~EAA~aLGls~~ 308 (398)
--|||=++.+||+||
T Consensus 97 gRq~Els~rlgmRPw 111 (111)
T 3bz1_D 97 LRQFEIARLVGVRPY 111 (111)
T ss_dssp HHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHCCCCH
T ss_conf 999999998388533
No 20
>>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} (E:)
Probab=27.15 E-value=33 Score=13.46 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=17.3
Q ss_pred CCCCHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6768233110332038899999999999
Q gi|254780171|r 7 KTVTRYFSRMKFLYDMRVHNISVQIILA 34 (398)
Q Consensus 7 ~~~~~~~~~~~~~~d~~~~~~~~Q~~~~ 34 (398)
...+..+.++|||+ |+|.|.-|+--+
T Consensus 3 QP~P~~W~~mPFW~--KvRPwasqltQv 28 (32)
T 1yfn_E 3 QPAPHQWQKMPFWQ--KVRPWAAQLTQM 28 (32)
T ss_pred CCCHHHHHHCCHHH--HHCHHHHHHHHH
T ss_conf 88716776383787--625299887776
No 21
>>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56)
Probab=26.91 E-value=34 Score=13.43 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 879999999998346367899989689989988898
Q gi|254780171|r 279 AFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 279 AyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~V 314 (398)
..-+|+++-=+....-.|.|-|+++|.++.+.-+.|
T Consensus 17 ~HPGeiL~e~Le~~gis~~~lA~~lgvs~~~is~Ii 52 (56)
T 3cec_A 17 IHPGEVIADILDDLDINTANFAEILGVSNQTIQEVI 52 (56)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 883399999999879999999999782789999998
No 22
>>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} (A:1-62)
Probab=26.84 E-value=34 Score=13.42 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 6367899989689989988898
Q gi|254780171|r 293 PRGQMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 293 pkGQ~EAA~aLGls~~q~~r~V 314 (398)
+.||...|.++|..+.|.=|.-
T Consensus 24 ~~gq~~vAe~iGvd~StiSR~K 45 (62)
T 1zs4_A 24 MLGTEKTAEAVGVDKSQISRWK 45 (62)
T ss_dssp HHCHHHHHHHHTSCHHHHHHHH
T ss_pred HHCCHHHHHHHCCCHHHHHHHH
T ss_conf 9720468998399899998998
No 23
>>3bz1_A Photosystem Q(B) protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_A* 2axt_A* 3bz2_A* 1w5c_A* 1izl_A* 3a0b_A* 3a0h_A* (A:29-142)
Probab=26.06 E-value=22 Score=14.59 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=13.0
Q ss_pred HHHHHHHHHHCCCHH
Q ss_conf 367899989689989
Q gi|254780171|r 294 RGQMEAAIALGLTHR 308 (398)
Q Consensus 294 kGQ~EAA~aLGls~~ 308 (398)
--|||=++.+||+||
T Consensus 100 gRqwEls~rlgmRPw 114 (114)
T 3bz1_A 100 GRQWELSYRLGMRPW 114 (114)
T ss_dssp HHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHCCCHH
T ss_conf 999999998399616
No 24
>>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} (A:109-506)
Probab=25.92 E-value=21 Score=14.64 Aligned_cols=36 Identities=17% Similarity=-0.079 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 787999999999834636789998968998998889
Q gi|254780171|r 278 AAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 278 aAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~ 313 (398)
...-.|.++-+++....-+.+||+.||+++...+|+
T Consensus 361 ~~ve~~~I~~al~~~~gn~~~aA~~Lgisr~tL~rl 396 (398)
T 3f8t_A 361 DDVEPEDVDIAAELVDWYLETAMQIPGGDEIRISSL 396 (398)
T ss_dssp SEECHHHHHHHHHHHHHHHHHTTC------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHC
T ss_conf 972899999999999999998654899977835545
No 25
>>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} (B:773-892,B:956-972)
Probab=23.85 E-value=38 Score=13.08 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=13.4
Q ss_pred HHHHHHHHHCCCHHHHHHH
Q ss_conf 6789998968998998889
Q gi|254780171|r 295 GQMEAAIALGLTHRKATRL 313 (398)
Q Consensus 295 GQ~EAA~aLGls~~q~~r~ 313 (398)
=|.||++-+|+|+.++|..
T Consensus 7 LQ~~ask~lg~s~~~tl~i 25 (137)
T 1gku_B 7 MLSDANRILKFSVKQTMQI 25 (137)
T ss_dssp HHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 7650455753558999999
No 26
>>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.18 E-value=39 Score=13.00 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHCCHH---HHHHHHHHCCCHHHHHHHH
Q ss_conf 87999999999834636---7899989689989988898
Q gi|254780171|r 279 AFIAEIVRSGLIAVPRG---QMEAAIALGLTHRKATRLV 314 (398)
Q Consensus 279 AyiaEivR~gI~sVpkG---Q~EAA~aLGls~~q~~r~V 314 (398)
-|.-|.+..+|++|-.| +.+||+..|.++....+++
T Consensus 13 ~yt~e~l~~Ai~aV~~g~mS~~~As~~y~IP~sTL~~ri 51 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKV 51 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCEEEHHCCCCCCCCCCHHHHHH
T ss_conf 368889999999998354122203753057650111227
Done!