HHSEARCH alignment of GI: 254780171 and SCOP domain: d2r6gf2

Alignment
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=99.54  E-value=7.8e-13  Score=94.15  Aligned_cols=180  Identities=14%  Similarity=0.133  Sum_probs=134.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             86526999999999999999999999999999999996264246787799999999501469999999999873012103
Q gi|254780171|r   81 SDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPD  160 (398)
Q Consensus        81 ~~~sy~~a~~vGl~NTl~va~~givlatiLG~~iGi~RlS~N~ll~~la~~YVE~~RN~PLLlql~fwy~~v~~~lP~~~  160 (398)
                      .++.+++++..-+.||+..++++.++++.+|+.++..-..++.-.|++-+.-+-+-.-+|..+--+.|++..........
T Consensus         9 ~d~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~   88 (244)
T d2r6gf2           9 TDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEIN   88 (244)
T ss_dssp             TCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             29527999999999999999999999999999999999847420478999999999984088999999998752355146


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
Q ss_conf             44410372035201000354535567004688778899999999999999864311223320455421010355899976
Q gi|254780171|r  161 HSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL  240 (398)
Q Consensus       161 ~~~~~~~~~flsnRGL~iP~p~~~~g~~~~l~~lilaiila~~l~~~a~~~~~~tg~~~~~~~~~~~~~~~~p~l~~~~~  240 (398)
                      ......+                                                +                        
T Consensus        89 ~~l~~~~------------------------------------------------~------------------------   96 (244)
T d2r6gf2          89 MMLSALF------------------------------------------------G------------------------   96 (244)
T ss_dssp             HHHHHTS------------------------------------------------S------------------------
T ss_pred             HHHHHHC------------------------------------------------C------------------------
T ss_conf             6665530------------------------------------------------2------------------------


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             54443322100131112682148789999999999977879999999998346367899989689989988898768999
Q gi|254780171|r  241 KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAM  320 (398)
Q Consensus       241 ~~~~~~~~p~l~~f~~~gG~~l~p~f~a~~iaL~l~taAyiaEivR~gI~sVpkGQ~EAA~aLGls~~q~~r~VIlPQAl  320 (398)
                           .+.+..        ......+.+.+++.+.....|..-+++++++++||.+.|||+..|-+++|++|+|++|+..
T Consensus        97 -----~~~~~~--------~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~  163 (244)
T d2r6gf2          97 -----VKPAWF--------SDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLI  163 (244)
T ss_dssp             -----CCCCTT--------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTH
T ss_pred             -----CCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCH
T ss_conf             -----677410--------1277999999999999710277999999997599999899997499765774999854468


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9974104789999997549999999
Q gi|254780171|r  321 RSIIPPLTSQYLNLLKNSSLAVAVG  345 (398)
Q Consensus       321 R~~iP~l~nq~i~l~K~SSLa~~Ig  345 (398)
                      ..++....-+++...|+=.....++
T Consensus       164 p~i~~~~il~fi~~~~~f~~~~~l~  188 (244)
T d2r6gf2         164 KPLTPLMIASFAFNFNNFVLIQLLT  188 (244)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf             9999999999999720056764425


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Maltose transport system permease protein MalF
species: Escherichia coli [TaxId: 562]