RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus Liberibacter asiaticus str. psy62] (398 letters) >3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:) Length = 217 Score = 72.3 bits (177), Expect = 1e-13 Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 14/205 (6%) Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249 F FV+G+ + + K + + +P ++L+ Sbjct: 24 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMI------- 76 Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309 S + + L+ A FIA +V + L+ +P G +EA+ A+G T + Sbjct: 77 ----PFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 132 Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQ---AIEI 366 R VLLP+A+ ++ T + L+ S++ AVG L +G + Sbjct: 133 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 192 Query: 367 ILIWMFIYLSLSIMIALFMNRLNAK 391 +++ + + + + + K Sbjct: 193 LVLLVILVYLIQFAGDRIVRAVTRK 217 Score = 35.7 bits (82), Expect = 0.012 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 7/95 (7%) Query: 85 YATAILVGFVNTFWLAFSGMIPATIIGTLVG-------AGRLSANKLVAWICRVYVEVFR 137 ++ G T + F +IG VG G++ AN + V +FR Sbjct: 5 MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFR 64 Query: 138 NIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLN 172 +IP ++++ ++ ++ + + Sbjct: 65 SIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVG 99 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:269-326,F:360-453) Length = 152 Score = 51.7 bits (124), Expect = 2e-07 Identities = 13/80 (16%), Positives = 28/80 (35%) Query: 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIP 325 L I + ++ + L A+P EA+ G + + LP ++ + P Sbjct: 68 RTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTP 127 Query: 326 PLTSQYLNLLKNSSLAVAVG 345 + + + N L + Sbjct: 128 LMIASFAFNFNNFVLIQLLT 147 >3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:) Length = 295 Score = 50.1 bits (119), Expect = 5e-07 Identities = 31/259 (11%), Positives = 81/259 (31%), Gaps = 7/259 (2%) Query: 139 IPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGI 198 LV+ F++ ++ +++ NR + + + +L + Sbjct: 43 FLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFL---SLYAGFLATLLAL 99 Query: 199 VLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIG 258 +L + F + + + ++ + + F L Sbjct: 100 LLGAPTGYILARFDFPGKRLVESIIDVPVVVPH----TVAGIALLTVFGSRGLIGEPLES 155 Query: 259 GSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQ 318 + +A+ + ++A R G +V AA +LG KA V LP Sbjct: 156 YIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPL 215 Query: 319 AMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378 + R ++ + + V + + +V + + + ++ Sbjct: 216 SARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVT 275 Query: 379 IMIALFMNRLNAKIALKEK 397 + I L + L+A ++ ++ Sbjct: 276 LSIFLVIRTLSAGWSIYDR 294 Score = 29.3 bits (65), Expect = 0.97 Identities = 10/110 (9%), Positives = 25/110 (22%) Query: 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFL 148 ++ + + F + A ++G G + + ++V +P V L Sbjct: 80 VISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIAL 139 Query: 149 YKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGI 198 S I + + + Sbjct: 140 LTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSV 189 >2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (C:69-249) Length = 181 Score = 43.4 bits (102), Expect = 5e-05 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 10/155 (6%) Query: 191 VFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPV 250 + + + G L+ R S ++ L +P V + Sbjct: 18 LIAVIFGTPLAYILARKSF-------PGKSVVEGIVDLPVVIPHTVAGIALLVVFGS--- 67 Query: 251 LGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKA 310 G + +A+ + + G +V A LG + + Sbjct: 68 SGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRV 127 Query: 311 TRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345 V LP ++R I+ + + V + Sbjct: 128 FFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA 162 Score = 31.8 bits (72), Expect = 0.14 Identities = 12/62 (19%), Positives = 22/62 (35%) Query: 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFF 147 A+ + T++ A + A I GT + + + V++ IP V Sbjct: 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIA 60 Query: 148 LY 149 L Sbjct: 61 LL 62 >2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:73-244) Length = 172 Score = 37.2 bits (86), Expect = 0.004 Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 10/137 (7%) Query: 188 KIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247 K+ S + + LS L + + + +LV + Sbjct: 18 KVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYA------- 70 Query: 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTH 307 L + I A ++ + EAA G T Sbjct: 71 ---LFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATP 127 Query: 308 RKATRLVLLPQAMRSII 324 +A RLVLLP ++ + Sbjct: 128 WQAFRLVLLPLSVPILA 144 >2pc6_A Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} (A:81-165) Length = 85 Score = 27.3 bits (61), Expect = 3.2 Identities = 7/17 (41%), Positives = 11/17 (64%) Query: 281 IAEIVRSGLIAVPRGQM 297 I EI R+G+ + RG+ Sbjct: 65 ILEIARTGVSGLSRGER 81 >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} (A:107-193) Length = 87 Score = 27.2 bits (61), Expect = 3.5 Identities = 6/17 (35%), Positives = 11/17 (64%) Query: 281 IAEIVRSGLIAVPRGQM 297 + EI R+G++A R + Sbjct: 65 VEEIARTGIVAXNRWNV 81 >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} (A:80-164) Length = 85 Score = 27.3 bits (61), Expect = 4.1 Identities = 7/15 (46%), Positives = 11/15 (73%) Query: 281 IAEIVRSGLIAVPRG 295 I E+ RSG++ + RG Sbjct: 66 IVEVARSGVVGLSRG 80 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.329 0.142 0.417 Gapped Lambda K H 0.267 0.0519 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,847,881 Number of extensions: 121675 Number of successful extensions: 377 Number of sequences better than 10.0: 1 Number of HSP's gapped: 372 Number of HSP's successfully gapped: 21 Length of query: 398 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 308 Effective length of database: 1,913,599 Effective search space: 589388492 Effective search space used: 589388492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 56 (25.8 bits)