RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780171|ref|YP_003064584.1| ABC transporter membrane
spanning protein (amino acid) [Candidatus Liberibacter asiaticus str.
psy62]
(398 letters)
>3dhw_A D-methionine transport system permease protein METI;
ABC-transporter, methionine uptake transporter, membrane
protein, amino-acid transport; 3.70A {Escherichia coli
K12} (A:)
Length = 217
Score = 72.3 bits (177), Expect = 1e-13
Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 14/205 (6%)
Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
F FV+G+ + + K + + +P ++L+
Sbjct: 24 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMI------- 76
Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309
S + + L+ A FIA +V + L+ +P G +EA+ A+G T +
Sbjct: 77 ----PFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 132
Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQ---AIEI 366
R VLLP+A+ ++ T + L+ S++ AVG L +G +
Sbjct: 133 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 192
Query: 367 ILIWMFIYLSLSIMIALFMNRLNAK 391
+++ + + + + + K
Sbjct: 193 LVLLVILVYLIQFAGDRIVRAVTRK 217
Score = 35.7 bits (82), Expect = 0.012
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 85 YATAILVGFVNTFWLAFSGMIPATIIGTLVG-------AGRLSANKLVAWICRVYVEVFR 137
++ G T + F +IG VG G++ AN + V +FR
Sbjct: 5 MMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFR 64
Query: 138 NIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLN 172
+IP ++++ ++ ++ + +
Sbjct: 65 SIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVG 99
>2r6g_F Maltose transport system permease protein MALF; ABC
transporter, catalytic intermediate, E. coli maltose
transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
K12} (F:269-326,F:360-453)
Length = 152
Score = 51.7 bits (124), Expect = 2e-07
Identities = 13/80 (16%), Positives = 28/80 (35%)
Query: 266 FMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIP 325
L I + ++ + L A+P EA+ G + + LP ++ + P
Sbjct: 68 RTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTP 127
Query: 326 PLTSQYLNLLKNSSLAVAVG 345
+ + + N L +
Sbjct: 128 LMIASFAFNFNNFVLIQLLT 147
>3d31_C Sulfate/molybdate ABC transporter, permease protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} (C:)
Length = 295
Score = 50.1 bits (119), Expect = 5e-07
Identities = 31/259 (11%), Positives = 81/259 (31%), Gaps = 7/259 (2%)
Query: 139 IPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGI 198
LV+ F++ ++ +++ NR + + + +L +
Sbjct: 43 FLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFL---SLYAGFLATLLAL 99
Query: 199 VLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPVLGQFNFIG 258
+L + F + + + ++ + + F L
Sbjct: 100 LLGAPTGYILARFDFPGKRLVESIIDVPVVVPH----TVAGIALLTVFGSRGLIGEPLES 155
Query: 259 GSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQ 318
+ +A+ + ++A R G +V AA +LG KA V LP
Sbjct: 156 YIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPL 215
Query: 319 AMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378
+ R ++ + + V + + +V + + + ++
Sbjct: 216 SARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVT 275
Query: 379 IMIALFMNRLNAKIALKEK 397
+ I L + L+A ++ ++
Sbjct: 276 LSIFLVIRTLSAGWSIYDR 294
Score = 29.3 bits (65), Expect = 0.97
Identities = 10/110 (9%), Positives = 25/110 (22%)
Query: 89 ILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFFL 148
++ + + F + A ++G G + + ++V +P V L
Sbjct: 80 VISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIAL 139
Query: 149 YKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPTLTMDTNAKIFVFSFVLGI 198
S I + + +
Sbjct: 140 LTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSV 189
>2onk_C Molybdate/tungstate ABC transporter, permease protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(C:69-249)
Length = 181
Score = 43.4 bits (102), Expect = 5e-05
Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 10/155 (6%)
Query: 191 VFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPV 250
+ + + G L+ R S ++ L +P V +
Sbjct: 18 LIAVIFGTPLAYILARKSF-------PGKSVVEGIVDLPVVIPHTVAGIALLVVFGS--- 67
Query: 251 LGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKA 310
G + +A+ + + G +V A LG + +
Sbjct: 68 SGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRV 127
Query: 311 TRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVG 345
V LP ++R I+ + + V +
Sbjct: 128 FFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA 162
Score = 31.8 bits (72), Expect = 0.14
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFF 147
A+ + T++ A + A I GT + + + V++ IP V
Sbjct: 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIA 60
Query: 148 LY 149
L
Sbjct: 61 LL 62
>2r6g_G Maltose transport system permease protein MALG; ABC
transporter, catalytic intermediate, E. coli maltose
transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli
K12} (G:73-244)
Length = 172
Score = 37.2 bits (86), Expect = 0.004
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 10/137 (7%)
Query: 188 KIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFD 247
K+ S + + LS L + + + +LV +
Sbjct: 18 KVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYA------- 70
Query: 248 KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTH 307
L + I A ++ + EAA G T
Sbjct: 71 ---LFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATP 127
Query: 308 RKATRLVLLPQAMRSII 324
+A RLVLLP ++ +
Sbjct: 128 WQAFRLVLLPLSVPILA 144
>2pc6_A Probable acetolactate synthase isozyme III (small subunit);
regulatory subunit, structural genomics, PSI; HET: MSE;
2.50A {Nitrosomonas europaea atcc 19718} (A:81-165)
Length = 85
Score = 27.3 bits (61), Expect = 3.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 281 IAEIVRSGLIAVPRGQM 297
I EI R+G+ + RG+
Sbjct: 65 ILEIARTGVSGLSRGER 81
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit,
structural genomics, PSI, protein structure initiative;
2.30A {Thermotoga maritima MSB8} (A:107-193)
Length = 87
Score = 27.2 bits (61), Expect = 3.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 281 IAEIVRSGLIAVPRGQM 297
+ EI R+G++A R +
Sbjct: 65 VEEIARTGIVAXNRWNV 81
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin
fold, ACT domain, transferase; HET: P33 1PE; 1.75A
{Escherichia coli} (A:80-164)
Length = 85
Score = 27.3 bits (61), Expect = 4.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 281 IAEIVRSGLIAVPRG 295
I E+ RSG++ + RG
Sbjct: 66 IVEVARSGVVGLSRG 80
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.329 0.142 0.417
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,847,881
Number of extensions: 121675
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 21
Length of query: 398
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 308
Effective length of database: 1,913,599
Effective search space: 589388492
Effective search space used: 589388492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.8 bits)