RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780171|ref|YP_003064584.1| ABC transporter membrane
spanning protein (amino acid) [Candidatus Liberibacter asiaticus str.
psy62]
(398 letters)
>3dhw_A D-methionine transport system permease protein METI;
ABC-transporter, methionine uptake transporter, membrane
protein, amino-acid transport; 3.70A {Escherichia coli
K12} SCOP: f.58.1.1
Length = 217
Score = 53.2 bits (127), Expect = 1e-07
Identities = 39/203 (19%), Positives = 78/203 (38%), Gaps = 12/203 (5%)
Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
F FV+G+ + + K + + +P ++L+
Sbjct: 24 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV 83
Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309
+ + L+ A FIA +V + L+ +P G +EA+ A+G T +
Sbjct: 84 GTS-----------IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 132
Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILI 369
R VLLP+A+ ++ T + L+ S++ AVG L +G A + +
Sbjct: 133 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 192
Query: 370 WMFIYLSLSIMIALFMNRLNAKI 392
+ + + L +I +R+ +
Sbjct: 193 -LVLLVILVYLIQFAGDRIVRAV 214
Score = 32.8 bits (74), Expect = 0.15
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 89 ILVGFVNTFWLAFSGMIPATIIGTLVG-------AGRLSANKLVAWICRVYVEVFRNIPP 141
++ G T + F +IG VG G++ AN + V +FR+IP
Sbjct: 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPF 68
Query: 142 LVVIFFLYKSVLSVLPIPDHSIVLPFGMFLN 172
++++ ++ ++ + +
Sbjct: 69 IILLVWMIPFTRVIVGTSIGLQAAIVPLTVG 99
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 49.6 bits (118), Expect = 1e-06
Identities = 28/207 (13%), Positives = 67/207 (32%), Gaps = 8/207 (3%)
Query: 191 VFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKPV 250
+ + +LG R L+ + +P V + + +
Sbjct: 96 LLALLLGAPTGYILARFDF-------PGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGL 148
Query: 251 LGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKA 310
+G+ + +A+ + ++A R G +V AA +LG KA
Sbjct: 149 IGEPLESYIQ-FRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKA 207
Query: 311 TRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILIW 370
V LP + R ++ + + V + + +V +
Sbjct: 208 FFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFISYGLSASRPI 267
Query: 371 MFIYLSLSIMIALFMNRLNAKIALKEK 397
+ + +++ I L + L+A ++ ++
Sbjct: 268 AVLLILVTLSIFLVIRTLSAGWSIYDR 294
Score = 28.0 bits (62), Expect = 3.7
Identities = 8/62 (12%), Positives = 21/62 (33%)
Query: 88 AILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIFF 147
+++ + + F + A ++G G + + ++V +P V
Sbjct: 79 SVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIA 138
Query: 148 LY 149
L
Sbjct: 139 LL 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 48.8 bits (116), Expect = 2e-06
Identities = 69/458 (15%), Positives = 121/458 (26%), Gaps = 193/458 (42%)
Query: 61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAF-SGMIPATIIGTLVGAGRL 119
+G++S + +L + F + G + L+
Sbjct: 65 LGYVSSLV----EPS------KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 120 SANKLVAWICRVYVE-------VFRNIPP-------------LVVIF---------F--- 147
+ K I + Y+ F LV IF F
Sbjct: 115 TLVKTKELI-KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 148 -----LYKSVLSVLPIPDHSIVLPFGMFLNN-------------RG------LSFPTLTM 183
Y ++ L I L+ +G L P+ T
Sbjct: 174 RDLYQTYHVLVGDL-I--KFS----AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 184 DTN--AKIFVFSFVL-GI-----------VLSL----FATRLS----------------- 208
D + I + S L G+ +L + L
Sbjct: 227 DKDYLLSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 209 ----RHFHEKTGKALPLL-YI---------STFL---I--------FGLPT--LVLIALK 241
F KA+ +L +I +T L I G+P+ L + L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 242 Y-QLHFDKPVLGQFNFIGGSTVSPEFMSLYIAL-SCYTAAFIAEIVRS--GL------IA 291
Q+ + + N S + P + I+L + ++ +S GL
Sbjct: 346 QEQVQ---DYVNKTN----SHL-PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 292 VPRGQMEAAI-----ALGLTHRKATRLVLLPQAMRSIIPPLTSQYL----NLLKN----- 337
P G ++ I L ++R LP + P S L +L+
Sbjct: 398 APSGLDQSRIPFSERKLKFSNR------FLP-----VASPFHSHLLVPASDLINKDLVKN 446
Query: 338 ------SSLAVAV-----GFADLVSVGGTIINQTGQAI 364
+ + V G +DL + G+I + I
Sbjct: 447 NVSFNAKDIQIPVYDTFDG-SDLRVLSGSISERIVDCI 483
Score = 46.1 bits (109), Expect = 1e-05
Identities = 68/400 (17%), Positives = 113/400 (28%), Gaps = 164/400 (41%)
Query: 8 TVTRYFSRMKFLYDMRVHNIS--VQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLS 65
YF ++ LY + ++ L S L +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETL------------------SELIR----TT 202
Query: 66 ERA------GFEIDQGI-----VPYTSDSSY-ATA------I----LVGFVNTFWLAFSG 103
A G I + + P D Y + I L +V T L G
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTP---DKDYLLSIPISCPLIGVIQLAHYVVTAKL--LG 257
Query: 104 MIPATIIGTLVGA-----GRLSA--------------NKLVA-----WI-CRVYVEVF-- 136
P + L GA G ++A + A +I R Y E +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPN 316
Query: 137 RNIPPLVVIFFLYKSVL--SVLPIPDHSIVLPFGMFLNNRGLSFPTL--TMD-TNA---- 187
++PP S+L S+ +++ +P M L+ L+ + ++ TN+
Sbjct: 317 TSLPP---------SILEDSL----ENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPA 362
Query: 188 --KIFVF------SFVL-GIVLSLFATRLSRHFHEKTGKA--------LPL----LYIST 226
++ + + V+ G SL+ L+ + KA +P L S
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYG--LNLTLRKA--KAPSGLDQSRIPFSERKLKFSN 418
Query: 227 -FLIFGLP----------TLVLIALKY--------QLHFDKPVLGQFNFIGGSTVSPEFM 267
FL P L+ L + PV F+ GS
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI--PVYDTFD---GSD------ 467
Query: 268 SLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTH 307
L + + IV I + E TH
Sbjct: 468 -----LRVLSGSISERIVD--CIIRLPVKWETTTQFKATH 500
Score = 31.1 bits (70), Expect = 0.53
Identities = 33/206 (16%), Positives = 58/206 (28%), Gaps = 52/206 (25%)
Query: 192 FSFVLGIVLSLFATRL----SRHFHEKT-GKAL------PLLYISTFLIFGLPTLVLIAL 240
++ A++L ++ E T G A P + FL + L+
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY---VSSLVEP 74
Query: 241 KYQLHFD---KPVLGQF--NFIGGSTV-----------SPEFMSLYIALSCYTAAFIA-- 282
FD L +F ++ G+ + + + Y A I
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 283 ----EIVRSGLI-AVPRGQMEAAI-AL----GLTHRKATRLVLLPQAMRSIIPPLTSQYL 332
+ S L AV G A + A+ G T L L Q ++ L
Sbjct: 135 RPFDKKSNSALFRAVGEGN--AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 333 NLLKN-SSLAVAV------GFADLVS 351
L + G +++
Sbjct: 193 ETLSELIRTTLDAEKVFTQGL-NILE 217
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.45
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 14/38 (36%)
Query: 53 EKSNLS-LGIGFLSERAGFEIDQGIVPYTSDSSYATAI 89
EK L L +A ++ Y DS+ A AI
Sbjct: 18 EKQALKKL-------QASLKL------YADDSAPALAI 42
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit,
structural genomics, PSI, protein structure initiative;
2.30A {Thermotoga maritima MSB8} SCOP: d.58.18.6
d.58.18.6
Length = 193
Score = 29.8 bits (67), Expect = 1.1
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 281 IAEIVRSGLIAVPRGQME 298
+ EI R+G++A+ R ++
Sbjct: 171 VEEIARTGIVAMNRWNVK 188
>3eam_A GLR4197 protein; pentameric ligand-gated ION-channel, membrane
protein, transport protein; HET: LMT PC1; 2.90A
{Gloeobacter violaceus} PDB: 3ehz_A 3ei0_A
Length = 317
Score = 28.3 bits (62), Expect = 2.8
Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 4/134 (2%)
Query: 16 MKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLGIGFLSERAGFEIDQG 75
+ + + IIL +L + W + L + ++ A + +
Sbjct: 186 YQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVST-LIAHIAFNILVET 244
Query: 76 IVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEV 135
+P T Y T + F +I T+ L + + + R+ V
Sbjct: 245 NLPKTP---YMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPV 301
Query: 136 FRNIPPLVVIFFLY 149
+ +++ F +
Sbjct: 302 VFLLANIILAFLFF 315
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold,
ACT domain, transferase; HET: P33 1PE; 1.75A
{Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Length = 164
Score = 28.3 bits (63), Expect = 3.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 281 IAEIVRSGLIAVPRG 295
I E+ RSG++ + RG
Sbjct: 145 IVEVARSGVVGLSRG 159
>2pc6_A Probable acetolactate synthase isozyme III (small subunit);
regulatory subunit, structural genomics, PSI; HET: MSE;
2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6
d.58.18.6
Length = 165
Score = 27.5 bits (61), Expect = 5.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 281 IAEIVRSGLIAVPRG 295
I EI R+G+ + RG
Sbjct: 145 ILEIARTGVSGLSRG 159
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.329 0.142 0.417
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,258,011
Number of extensions: 147455
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 23
Length of query: 398
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 304
Effective length of database: 3,414,294
Effective search space: 1037945376
Effective search space used: 1037945376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.7 bits)