RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780171|ref|YP_003064584.1| ABC transporter membrane
spanning protein (amino acid) [Candidatus Liberibacter asiaticus str.
psy62]
         (398 letters)



>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
           protein MetI {Escherichia coli [TaxId: 562]}
          Length = 203

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 36/194 (18%), Positives = 74/194 (38%), Gaps = 11/194 (5%)

Query: 190 FVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLHFDKP 249
             F FV+G+ + +              K    +     +   +P ++L+           
Sbjct: 19  GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV 78

Query: 250 VLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRK 309
                             +  + L+   A FIA +V + L+ +P G +EA+ A+G T  +
Sbjct: 79  GTS-----------IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQ 127

Query: 310 ATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQTGQAIEIILI 369
             R VLLP+A+  ++   T   + L+  S++  AVG   L  +G         A  +  +
Sbjct: 128 IVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTV 187

Query: 370 WMFIYLSLSIMIAL 383
            + + + + ++   
Sbjct: 188 LVLLVILVYLIQFA 201



 Score = 32.0 bits (72), Expect = 0.078
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 89  ILVGFVNTFWLAFSGMIPATIIGTLVG-------AGRLSANKLVAWICRVYVEVFRNIPP 141
           ++ G   T  + F       +IG  VG        G++ AN  +       V +FR+IP 
Sbjct: 4   LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPF 63

Query: 142 LVVIFFLYKSVLSVLPIPDHSIVLPFGMFLN 172
           ++++ ++      ++            + + 
Sbjct: 64  IILLVWMIPFTRVIVGTSIGLQAAIVPLTVG 94


>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit,
           IlvH {Escherichia coli [TaxId: 562]}
          Length = 86

 Score = 28.5 bits (64), Expect = 1.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 281 IAEIVRSGLIAVPRG 295
           I E+ RSG++ + RG
Sbjct: 67  IVEVARSGVVGLSRG 81


>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit,
           IlvH {Nitrosomonas europaea [TaxId: 915]}
          Length = 86

 Score = 27.7 bits (62), Expect = 1.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 281 IAEIVRSGLIAVPRG 295
           I EI R+G+  + RG
Sbjct: 66  ILEIARTGVSGLSRG 80


>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, 
           IlvH {Thermotoga maritima [TaxId: 2336]}
          Length = 83

 Score = 27.7 bits (62), Expect = 1.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 281 IAEIVRSGLIAVPRG 295
           + EI R+G++A+ R 
Sbjct: 67  VEEIARTGIVAMNRW 81


>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 334

 Score = 26.5 bits (57), Expect = 4.3
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 5/40 (12%)

Query: 95  NTFWLAFSGMIP-----ATIIGTLVGAGRLSANKLVAWIC 129
           + F L   G+         +    V  G++  N+ VA   
Sbjct: 280 DNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTS 319


>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
           [TaxId: 329]}
          Length = 330

 Score = 26.5 bits (57), Expect = 4.4
 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 8/41 (19%)

Query: 95  NTFWLAFSGMI------PATIIGTLVGAGRLSANKLVAWIC 129
           N F    +G                V  GR+S  + V  + 
Sbjct: 277 NDFRAIPNGAPGVEERLMMVY--QGVNEGRISLTQFVELVA 315


>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 26.1 bits (56), Expect = 5.3
 Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 10/194 (5%)

Query: 186 NAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIALKYQLH 245
                + +  L + + +    L +    +      +L I  + +    ++++    +   
Sbjct: 24  TVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQS 83

Query: 246 FD-----KPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA 300
           F         L        S  +     L I  +     ++  +    L A+P    EA+
Sbjct: 84  FGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEAS 143

Query: 301 IALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQT 360
              G    +    + LP  ++ + P + + +     N  L        L + G   +  T
Sbjct: 144 AMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQL-----LTNGGPDRLGTT 198

Query: 361 GQAIEIILIWMFIY 374
             A    L+  + Y
Sbjct: 199 TPAGYTDLLVNYTY 212


>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat
          (Triticum aestivum) [TaxId: 4565]}
          Length = 274

 Score = 25.1 bits (54), Expect = 10.0
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 73 DQGIVPYTSDSSYATAILVGFVNTF 97
           +G +    DS   T + + F++ F
Sbjct: 17 AEGSLREACDSGMYTMVTMSFLDVF 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,414,515
Number of extensions: 64381
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 19
Length of query: 398
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,213,086
Effective search space: 377269746
Effective search space used: 377269746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.8 bits)