BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780171|ref|YP_003064584.1| ABC transporter membrane
spanning protein (amino acid) [Candidatus Liberibacter asiaticus str.
psy62]
(398 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 398
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/398 (100%), Positives = 398/398 (100%)
Query: 1 MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLG 60
MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLG
Sbjct: 1 MIKNARKTVTRYFSRMKFLYDMRVHNISVQIILALLLTVIFLWCVNNVYNNMEKSNLSLG 60
Query: 61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLS 120
IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLS
Sbjct: 61 IGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLS 120
Query: 121 ANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPT 180
ANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPT
Sbjct: 121 ANKLVAWICRVYVEVFRNIPPLVVIFFLYKSVLSVLPIPDHSIVLPFGMFLNNRGLSFPT 180
Query: 181 LTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL 240
LTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL
Sbjct: 181 LTMDTNAKIFVFSFVLGIVLSLFATRLSRHFHEKTGKALPLLYISTFLIFGLPTLVLIAL 240
Query: 241 KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA 300
KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA
Sbjct: 241 KYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFIAEIVRSGLIAVPRGQMEAA 300
Query: 301 IALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQT 360
IALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQT
Sbjct: 301 IALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLAVAVGFADLVSVGGTIINQT 360
Query: 361 GQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398
GQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK
Sbjct: 361 GQAIEIILIWMFIYLSLSIMIALFMNRLNAKIALKEKK 398
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 386
Score = 70.1 bits (170), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 57/82 (69%)
Query: 271 IALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQ 330
+ +S + +A+IAE++R GL ++ +GQ EAA +LGL++ + RL+++PQ ++ +IP + +
Sbjct: 254 LGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313
Query: 331 YLNLLKNSSLAVAVGFADLVSV 352
++ L K+SSL + DL+ +
Sbjct: 314 FIGLFKDSSLISIINMFDLLGI 335
Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 87 TAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIF 146
T++ G + T ++F G+I + +G L+ GR S ++ + C ++E+FR +P + V+F
Sbjct: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230
Query: 147 FLYKSVLSVLPIPD 160
S++ L +PD
Sbjct: 231 M--ASIMLPLFLPD 242
>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter
asiaticus str. psy62]
Length = 226
Score = 61.6 bits (148), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 40/217 (18%)
Query: 177 SFPTL-------TMDTNAKIFVFSFVLGIVLSLFATRLSR-------HFHEKTGKALPLL 222
SFP L T+ FV S ++G +++ S HF+ + PLL
Sbjct: 12 SFPQLLYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHFYVWIFRGTPLL 71
Query: 223 YISTFLIF-GLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSPEFMSLYIALSCYTAAFI 281
+ F+IF GLP + ++ FD F+++ I+L+ +A+I
Sbjct: 72 -VQLFVIFYGLPHIGIV-------FDS-----------------FVAIIISLTLNFSAYI 106
Query: 282 AEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQYLNLLKNSSLA 341
+EI+RS +I++P+GQ +A+ A+GLT ++ R ++LPQ + + PL+S+++++LK++S+A
Sbjct: 107 SEIIRSSIISIPKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVA 166
Query: 342 VAVGFADLVSVGGTIINQTGQAIEIILIWMFIYLSLS 378
+ ++ I++ T Q + I F+YL L+
Sbjct: 167 STITIPEIFQTAQRIVSTTYQPLIIYCELAFVYLILT 203
>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 281
Score = 29.3 bits (64), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 207 LSRHFHEKTGKALPLLYISTF--LIFGLPTLVLIALKYQLHFDKPVLGQFNFIGGSTVSP 264
+ + + ++T + L L+ +STF + G+P VL A Y + L F+ P
Sbjct: 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRL----FLDSMQTIP 139
Query: 265 EFMSLYIALSCYTAAFIAEIV--------------RSGLIAVPRGQMEAAIALGLTHRKA 310
F+ L AL + + IV R G+I+ P EAA A G T +
Sbjct: 140 TFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQV 199
Query: 311 TRLVLLPQAMRSIIPPLTS 329
R V LP A+ I+ LT
Sbjct: 200 FRKVELPFAIPQIVASLTQ 218
>537021.9.peg.753_1
Length = 1033
Score = 28.1 bits (61), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 57 LSLGIGFLSERAGFEIDQGIVPYTSDSSYATAILVGFVNTFWLAFSGMIPA 107
L + FL++R G ++D ++P+ +Y G + F L SGM A
Sbjct: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.329 0.142 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,604
Number of Sequences: 1233
Number of extensions: 10160
Number of successful extensions: 37
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 10
length of query: 398
length of database: 328,796
effective HSP length: 76
effective length of query: 322
effective length of database: 235,088
effective search space: 75698336
effective search space used: 75698336
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 39 (19.6 bits)