HHsearch alignment for GI: 254780172 and conserved domain: COG1176
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].
Probab=98.77 E-value=2e-06 Score=57.40 Aligned_cols=146 Identities=22% Similarity=0.245 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-------HHHCCCCHHHHHHHHHHHHHHHC-CCC
Q ss_conf 1002478779999999999987567754441278688999789888-------87614722899999999766415-588
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFI-------ELFRGVPLVTVLFMASIMLPLFL-PDT 243 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~i-------e~~Rg~Pli~~lf~~~~~lp~~l-p~g 243 (386)
T Consensus 63 ~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll~lvilPfwts~LiR~yawi~iL~-~~G~iN~~L~~lG 141 (287)
T COG1176 63 LYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVILG-RNGLINQALLALG 141 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCC
T ss_conf 899999999999999999999999999999996773799999999999998999999999999983-4771648899768
Q ss_pred CC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 77------387999999999998999899999999845866789999962168999999996998998620047999999
Q gi|254780172|r 244 WD------VDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGL 317 (386)
Q Consensus 244 ~~------~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l 317 (386)
T Consensus 142 l~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pGi~aG~~lVFi~a 221 (287)
T COG1176 142 LIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPA 221 (287)
T ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHH
T ss_conf 87886798805336768999986599999999999839978999998759976547642032177189999999998977
Q ss_pred H
Q ss_conf 9
Q gi|254780172|r 318 F 318 (386)
Q Consensus 318 ~ 318 (386)
T Consensus 222 l 222 (287)
T COG1176 222 L 222 (287)
T ss_pred H
T ss_conf 5