HHsearch alignment for GI: 254780172 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.42 E-value=8e-11 Score=83.85 Aligned_cols=200 Identities=18% Similarity=0.204 Sum_probs=127.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHCCCCCCCCHH
Q ss_conf 110024787799999999999875677544412786889997898888761472289999-9999766415588773879
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF-MASIMLPLFLPDTWDVDKL 249 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf-~~~~~lp~~lp~g~~~~~~ 249 (386)
T Consensus 61 ~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~----~~l~~~PlvvP~Iv~gi~ll~~f~~~~~-~~~~ 135 (267)
T COG1177 61 PRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLL----EGLILLPLVVPDIVTGIALLLLFAALGL-PGGF 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCH
T ss_conf 4899999999999999999999999999999997040268999----9999742415099999999999998688-7529
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999899999999845866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
T Consensus 136 ~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~g 215 (267)
T COG1177 136 WTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAG 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
T ss_conf 99999999998668999999999738967999998769988889899769752799999999999999867786311328
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974101003551369999999999999999999999999998
Q gi|254780172|r 330 FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 330 ~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~r 379 (386)
T Consensus 216 p~~~TLP~~i~s~~r---~~~~P~-i~Alstll~~~~~ll~~~~~~~~~~ 261 (267)
T COG1177 216 PGFTTLPLQIYSMIR---RGITPE-INALSTLLLLLSLLLILLASRLLRR 261 (267)
T ss_pred CCCCCHHHHHHHHHH---CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998721899999865---589819-9999999999999999999998643