HHsearch alignment for GI: 254780172 and conserved domain: COG1177

>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.42  E-value=8e-11  Score=83.85  Aligned_cols=200  Identities=18%  Similarity=0.204  Sum_probs=127.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHCCCCCCCCHH
Q ss_conf             110024787799999999999875677544412786889997898888761472289999-9999766415588773879
Q gi|254780172|r  171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF-MASIMLPLFLPDTWDVDKL  249 (386)
Q Consensus       171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf-~~~~~lp~~lp~g~~~~~~  249 (386)
T Consensus        61 ~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~----~~l~~~PlvvP~Iv~gi~ll~~f~~~~~-~~~~  135 (267)
T COG1177          61 PRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLL----EGLILLPLVVPDIVTGIALLLLFAALGL-PGGF  135 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCH
T ss_conf             4899999999999999999999999999999997040268999----9999742415099999999999998688-7529


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998999899999999845866789999962168999999996998998620047999999961289999999
Q gi|254780172|r  250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM  329 (386)
Q Consensus       250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~  329 (386)
T Consensus       136 ~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~g  215 (267)
T COG1177         136 WTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAG  215 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
T ss_conf             99999999998668999999999738967999998769988889899769752799999999999999867786311328


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999974101003551369999999999999999999999999998
Q gi|254780172|r  330 FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKT  379 (386)
Q Consensus       330 ~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~r  379 (386)
T Consensus       216 p~~~TLP~~i~s~~r---~~~~P~-i~Alstll~~~~~ll~~~~~~~~~~  261 (267)
T COG1177         216 PGFTTLPLQIYSMIR---RGITPE-INALSTLLLLLSLLLILLASRLLRR  261 (267)
T ss_pred             CCCCCHHHHHHHHHH---CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998721899999865---589819-9999999999999999999998643