HHsearch alignment for GI: 254780172 and conserved domain: COG4239
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=98.17 E-value=0.00052 Score=42.95 Aligned_cols=168 Identities=23% Similarity=0.356 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 47877999999999998756775444127868899978988887614722899999-99976641558877387999999
Q gi|254780172|r 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFM-ASIMLPLFLPDTWDVDKLLRALL 254 (386)
Q Consensus 176 Gl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~-~~~~lp~~lp~g~~~~~~~~a~i 254 (386)
T Consensus 147 gL~lT~~SaliGv~~GA~qGyf--------gg~vdL~~QRfIEvws~mP~lyllii~as~~~p~----------f~~ll~ 208 (341)
T COG4239 147 GLSLTLISALIGVLAGALQGYF--------GGWVDLLGQRFIEVWSGMPTLYLLIILASIFQPN----------FWWLLG 208 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----------HHHHHH
T ss_conf 9999999999999888775341--------3004887705999984472999999999996854----------799999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHH----
Q ss_conf 999998999899999999-8458667899999621689999999969989986---20047999999961289999----
Q gi|254780172|r 255 GVSAFASAYIAEVLRGGL-QSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRV---IPGIVNTFIGLFKDSSLISI---- 326 (386)
Q Consensus 255 ~l~l~~aAy~aEi~Rggl-~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~---iP~l~n~~i~l~KdTsL~~~---- 326 (386)
T Consensus 209 i~llf~Wm~lv~vvRaefLr~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTl--tsLdFLgfgl 286 (341)
T COG4239 209 IMLLFGWMSLVGVVRAEFLRARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTL--TSLDFLGFGL 286 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHH--HHHHHHCCCC
T ss_conf 99999999999999999998602688999997398865030213262988999998789870633230--0166652699
Q ss_pred ----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----999999999999741010035513699999999999999999
Q gi|254780172|r 327 ----INMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFS 368 (386)
Q Consensus 327 ----Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ 368 (386)
T Consensus 287 p~gspSLGELl~qgk~nlq-apWlg----it~fv~l~~~lslLvfI 327 (341)
T COG4239 287 PPGSPSLGELLNQGKNNLQ-APWLG----ITAFVVLSLLLSLLIFI 327 (341)
T ss_pred CCCCCCHHHHHHHHHHCCC-CCHHH----HHHHHHHHHHHHHHHHH
T ss_conf 9999678999997652477-84255----88999999999999994