HHsearch alignment for GI: 254780172 and conserved domain: PRK11365
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional.
Probab=99.61 E-value=2.6e-13 Score=98.80 Aligned_cols=197 Identities=17% Similarity=0.230 Sum_probs=133.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 11100247877999999999998756775444127868899978988887614722899999999766415588773879
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKL 249 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~ 249 (386)
T Consensus 55 ~g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~-g~~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwf------G~g~~~~ 127 (263)
T PRK11365 55 SGELWQHLAISSWRALIGFSIGGSLGLILGLIS-GLSRWGERLLDTSIQMLRNVPHLALIPLVILWF------GIDESAK 127 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHH------CCCCCHH
T ss_conf 845999999999999999999999999999999-986999987585999997657999999999997------1574204
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999899999999845866789999962168999999996998998620047999999961289999999
Q gi|254780172|r 250 LRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 (386)
Q Consensus 250 ~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~ 329 (386)
T Consensus 128 i-~~i~~~~~--~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~~v~aE~i~~ 204 (263)
T PRK11365 128 I-FLVALGTL--FPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISA 204 (263)
T ss_pred H-HHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4-78865104--28899998887549999999998729999999999898006889999999999999999999999844
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999974101003551369999999999999999999999999998433
Q gi|254780172|r 330 FDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHK 382 (386)
Q Consensus 330 ~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~ 382 (386)
T Consensus 205 ~~--GLG~~i~~a~~----~~~~~~v~a~ii~i~llg~~l~~~~~~lerrll~ 251 (263)
T PRK11365 205 NS--GIGYLAMNARE----FLQTDVVVVAIILYALLGKLADVSAQLLERLWLR 251 (263)
T ss_pred CC--CHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 69--88899999998----7068899999999999999999999999999388