HHsearch alignment for GI: 254780172 and conserved domain: TIGR01726
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.95 E-value=8.5e-28 Score=185.68 Aligned_cols=97 Identities=41% Similarity=0.691 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 11002478779999999999987567754441278688999789888876147228999999997664155887738799
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLL 250 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~ 250 (386)
T Consensus 3 p~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~yfgLP~~---Gi~l~~~~ 79 (99)
T TIGR01726 3 PFLLKGLLLTLLISVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLI---GIRLSPLT 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHH
T ss_conf 789999999999999999999999999999987135999999999999996207999999999843542---77067789
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999989998999999
Q gi|254780172|r 251 RALLGVSAFASAYIAEVLRG 270 (386)
Q Consensus 251 ~a~i~l~l~~aAy~aEi~Rg 270 (386)
T Consensus 80 Aa~~al~l~~~AY~aEi~R~ 99 (99)
T TIGR01726 80 AAVIALTLFEGAYLAEIFRG 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999879999876539