HHsearch alignment for GI: 254780172 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.54 E-value=1.9e-11 Score=87.62 Aligned_cols=152 Identities=18% Similarity=0.324 Sum_probs=118.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 11002478779999999999987567754441278688999789888876147228999999997664155887738799
Q gi|254780172|r 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDVDKLL 250 (386)
Q Consensus 171 t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~~~~~ 250 (386)
T Consensus 82 ~G~W~~am~Tlalv~~av~la~~iGiPlGI~~-~~s~~~~~~l~pild~mQTiP~fvyLip---~i~lf---GiG---~~ 151 (267)
T TIGR03416 82 QGYWEETVETLALVLSATVVCMVIGVPLGIAA-AHRPWLYAIMRPVLDLMQTLPTFVYLIP---ALVLF---GLG---MV 151 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHH---CCC---CH
T ss_conf 71589999999999999999999999999999-8169999999999987431546799999---99994---887---05
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999989998999999998458667899999621689999999969989986200479999999612899999999
Q gi|254780172|r 251 RALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMF 330 (386)
Q Consensus 251 ~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~Ig~~ 330 (386)
T Consensus 152 ~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~IGa~ 231 (267)
T TIGR03416 152 PGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAALVGAD 231 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 69999999998899999999998567689999998399898897994184158999999999999999999999996788
Q ss_pred HH
Q ss_conf 99
Q gi|254780172|r 331 DL 332 (386)
Q Consensus 331 el 332 (386)
T Consensus 232 GL 233 (267)
T TIGR03416 232 GL 233 (267)
T ss_pred CC
T ss_conf 53