Query gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 386
No_of_seqs 227 out of 3276
Neff 6.0
Searched_HMMs 23785
Date Mon May 23 10:29:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780172.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dhw_A D-methionine transport 100.0 1.9E-27 7.9E-32 182.3 15.3 201 174-379 10-217 (217)
2 3d31_C Sulfate/molybdate ABC t 99.9 1.3E-19 5.3E-24 135.3 19.4 210 170-385 77-294 (295)
3 2onk_C Molybdate/tungstate ABC 99.8 4.5E-19 1.9E-23 132.0 14.5 209 170-386 67-283 (284)
4 2r6g_F Maltose transport syste 99.7 6E-16 2.5E-20 113.3 15.8 203 173-379 277-511 (514)
5 2r6g_G Maltose transport syste 99.5 3.5E-13 1.5E-17 96.7 12.0 154 172-328 80-237 (296)
6 1ntc_A Protein (nitrogen regul 70.3 3.1 0.00013 19.0 3.2 38 260-297 48-85 (91)
7 1eto_A FIS, factor for inversi 69.8 4.4 0.00019 18.1 3.9 37 261-297 56-92 (98)
8 1umq_A Photosynthetic apparatu 68.2 4.7 0.0002 17.9 3.8 35 263-297 41-75 (81)
9 3e7l_A Transcriptional regulat 60.0 7.1 0.0003 16.8 4.6 37 261-297 17-53 (63)
10 1g2h_A Transcriptional regulat 54.8 8.7 0.00036 16.3 3.9 36 261-297 19-54 (61)
11 1ojl_A Transcriptional regulat 33.2 19 0.0008 14.3 3.3 35 263-297 268-302 (304)
12 2cw1_A SN4M; lambda CRO fold, 26.9 15 0.00064 14.9 0.7 31 275-311 12-42 (65)
13 3mhs_C SAGA-associated factor 22.1 23 0.00096 13.8 0.9 19 368-386 81-99 (99)
No 1
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1
Probab=99.95 E-value=1.9e-27 Score=182.34 Aligned_cols=201 Identities=18% Similarity=0.262 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 0247877999999999998756----77544412---7868899978988887614722899999999766415588773
Q gi|254780172|r 174 WGGLLVTLVISFFGIIISMPLG----ILLALGRN---SNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDV 246 (386)
Q Consensus 174 ~gGl~~Tl~l~~~~~~~~~~lG----~llal~r~---s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~ 246 (386)
..|+..|+.+++.+.+++.++| ++++..|. ...+.+......+++++|++|.++.+++.....+... +...
T Consensus 10 l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~--~~~~ 87 (217)
T 3dhw_A 10 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV--GTSI 87 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT--CCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_conf 99999999999999999999999999999998644432008999999999999999999999999999999998--6123
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 87999999999998999899999999845866789999962168999999996998998620047999999961289999
Q gi|254780172|r 247 DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISI 326 (386)
Q Consensus 247 ~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~ 326 (386)
.+..++++.+++..+|+.+.+|+|++++|++|.|||+++|.|++|++++|++||+.+..++++.+.++..+||+++++.
T Consensus 88 -~~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~vilP~~~p~ii~~~~~~~~~~i~~~~i~~~ 166 (217)
T 3dhw_A 88 -GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA 166 (217)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -6999999999986799999999999858989999987189898999697419978999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999974101003551369999999999999999999999999998
Q gi|254780172|r 327 INMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 327 Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~r 379 (386)
+|..|+.........+.. + ............++++++++..++..|++|||
T Consensus 167 ig~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~rR 217 (217)
T 3dhw_A 167 VGAGGLGQIGYQYGYIGY-N-ATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217)
T ss_dssp TTCCHHHHHHHHHHHSSC-C-TTHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988799999999999860-0-89999999999999999999999999975699
No 2
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=99.86 E-value=1.3e-19 Score=135.34 Aligned_cols=210 Identities=15% Similarity=0.171 Sum_probs=158.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------HCC-
Q ss_conf 1110024787799999999999875677544412-78688999789888876147228999999997664------155-
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRN-SNIPVLRYACITFIELFRGVPLVTVLFMASIMLPL------FLP- 241 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~-s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~------~lp- 241 (386)
+.+.|.++..|+.+++++.+++.++|+.+|.... ++.+ .|........+---+|.++.-+..+..+.. ...
T Consensus 77 ~~~~~~~i~~Tl~~a~~s~~i~~ilg~~~a~~l~~~~~~-~~~~~~~l~~~p~~~p~~v~~~~~~~~~~~~g~~~~~~~~ 155 (295)
T 3d31_C 77 NRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFP-GKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLES 155 (295)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHC
T ss_conf 989999999999999999999999999999999964543-5899999999999999888999999986124653321010
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 88773879999999999989998999999998458667899999621689999999969989986200479999999612
Q gi|254780172|r 242 DTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDS 321 (386)
Q Consensus 242 ~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdT 321 (386)
.....+.+...+++.++...+|..+++++++++||+.+.|||+++|.|++|++++|++|++.+..+.+..-.++..++|.
T Consensus 156 ~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~~Gas~~~~~~~IiLP~~~p~i~~~~~l~f~~~~~~f 235 (295)
T 3d31_C 156 YIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEF 235 (295)
T ss_dssp TCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26712578999999999807443201578887315269999998499936632353399899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999999999999974101003551369999999999999999999999999998433789
Q gi|254780172|r 322 SLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSK 385 (386)
Q Consensus 322 sL~~~Ig~~el~~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~r 385 (386)
....++|-.+.+.......+-.+ +.+ +....+++++.++|..+....+++|||..+-+|
T Consensus 236 ~~~~~l~~~~~~~~~~i~~~~~~--~~~---~~a~a~a~il~ii~l~i~~~~~~L~~~~~~~~r 294 (295)
T 3d31_C 236 GAVVILAYYPMVGPTLIYDRFIS--YGL---SASRPIAVLLILVTLSIFLVIRTLSAGWSIYDR 294 (295)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHH--STT---TTTHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH--CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 99998848973499999999993--489---999999999999999999999999974503357
No 3
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=99.82 E-value=4.5e-19 Score=132.03 Aligned_cols=209 Identities=12% Similarity=0.190 Sum_probs=150.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCC----CC
Q ss_conf 111002478779999999999987567754441-2786889997898888761472289999999976-64155----88
Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PLFLP----DT 243 (386)
Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~~lp----~g 243 (386)
+.+.|..+..|+.+++++.+++.++|+.+|..- +++.+ .|..-.....+-..+|-++..+.....+ +.... ..
T Consensus 67 ~~~~~~~~~~Sl~~a~~s~~l~~~ig~~~a~~l~~~~~~-~~~~~~~l~~~p~~iP~~v~~~~~~~~~~~~~~~~~~~~~ 145 (284)
T 2onk_C 67 DPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFP-GKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPL 145 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS-SHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 979999999999999999999999999999999982644-8999999999787445144566665533122556762100
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 77387999999999998999899999999845866789999962168999999996998998620047999999961289
Q gi|254780172|r 244 WDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSL 323 (386)
Q Consensus 244 ~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL 323 (386)
...+.....+++.+....+|+.++++++++++|+++.|||+++|.|+||++++|++||+.+..+++..-.++..++|.+.
T Consensus 146 ~~~~~~~~iil~~~~~~~p~~~~~~~~~l~~i~~~l~eaA~~lGas~~~~~~~IilP~~~p~i~~~~il~f~~~~~~~~~ 225 (284)
T 2onk_C 146 KFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGA 225 (284)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03210699999988614650222343553158856899999759893530110249999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999999--741010035513699999999999999999999999999984337899
Q gi|254780172|r 324 ISIINMFDLLGIVRV--NFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 324 ~~~Ig~~el~~~~~~--~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~rl~~~~rR 386 (386)
+..+|-...+..... ...+.+ +.. ...++++..+++..+....+++++|-+..++|
T Consensus 226 ~~~l~~~~~~~~~~i~~~~~~~~----~~~---~~a~a~il~~i~l~~~~~~~~l~~r~~~~~~~ 283 (284)
T 2onk_C 226 VVVIAYYPMIAPTLIYERYLSEG----LSA---AMPVAAILILLSLAVFVALRIIVGREDVSEGQ 283 (284)
T ss_dssp HHTTCCSSCCHHHHHHHHHHHHC----GGG---THHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHCCCCHHHHHHHHHHHCCC----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99882898529999999998058----999---99999999999999999999999713774399
No 4
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F
Probab=99.71 E-value=6e-16 Score=113.27 Aligned_cols=203 Identities=17% Similarity=0.202 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------HC--CCC
Q ss_conf 002478779999999999987567754441278688999789888876147228999999997664-------15--588
Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPL-------FL--PDT 243 (386)
Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~-------~l--p~g 243 (386)
.|..+..|+..++++.++++++|..+|.....+....|.+......+-..+|.++..+....++.. ++ -.|
T Consensus 277 ~~~sl~~t~~~a~~s~~l~~~~gl~la~~~~~~~~r~~~~~~~l~~lP~~iP~iv~~l~~~~lf~~~~G~i~~~l~~l~g 356 (514)
T 2r6g_F 277 FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFG 356 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 99999999999878899999999999999864123511130251269999999999999999871244235556664048
Q ss_pred CC----CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 77----38---799999999999899989999999984586678999996216899999999699899862004799999
Q gi|254780172|r 244 WD----VD---KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIG 316 (386)
Q Consensus 244 ~~----~~---~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~ 316 (386)
.+ .| .....+++......+|+..++++++++||+.+.|||+..|.|+||++++|++|+..+.++|...-.++.
T Consensus 357 ~~~~~l~~~~~~~~~vil~~~~~~~P~~~~i~~~al~sIp~~l~EAA~idGAs~~q~f~~I~lPll~p~i~~~~il~f~~ 436 (514)
T 2r6g_F 357 VKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAF 436 (514)
T ss_dssp CCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHHHHHH
T ss_pred CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHEEEHHHHHHHHHHHHHHHHHH
T ss_conf 88503137687799999999988887877765544316985899999975988622301130364699999999999999
Q ss_pred HHHHHHHHHHHH--------------HHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996128999999--------------99999--9999974101003551369999999999999999999999999998
Q gi|254780172|r 317 LFKDSSLISIIN--------------MFDLL--GIVRVNFSESTWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKT 379 (386)
Q Consensus 317 l~KdTsL~~~Ig--------------~~el~--~~~~~~~~~~~~~~~~~~~e~y~~~a~iY~ii~~~ls~~~~~lE~r 379 (386)
.+++-.+.+.+. ..|.+ +.-+....... + ..+-.=..++++.++++..++.+..++.||
T Consensus 437 ~~~~F~~~~lLt~Ggp~~~~~~~~~~~t~~l~~~~y~~af~~~~--~--~~~g~AaAiavil~liv~~l~~i~~r~~r~ 511 (514)
T 2r6g_F 437 NFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGG--G--QDFGLAAAIATLIFLLVGALAIVNLKATRM 511 (514)
T ss_dssp HHTCHHHHHHHCSSCSBCSSCSSCCBSSCCHHHHHHHHHTSSSS--C--CCHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988899999479987555556540688999999999985154--5--678999999999999999999999999811
No 5
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G
Probab=99.49 E-value=3.5e-13 Score=96.72 Aligned_cols=154 Identities=16% Similarity=0.077 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHH-HH--HHHHHHHHCCCCCCCC
Q ss_conf 1002478779999999999987567754441-278688999789888876147228999-99--9997664155887738
Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVL-FM--ASIMLPLFLPDTWDVD 247 (386)
Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~l-f~--~~~~lp~~lp~g~~~~ 247 (386)
..|..+..|+.+++.+.++++++|...|.+- +.+.+.-+.... .+...--.|..+.. .+ ....+... ......
T Consensus 80 ~~~~~l~nSl~~a~~~~~~~~~i~~~~a~~l~r~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~g~~--~~~~~~ 156 (296)
T 2r6g_G 80 PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLK-GMLIFQMFPAVLSLVALYALFDRLGEY--IPFIGL 156 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHH-HHHHTTSSCSSSHHHHHHHHHHHHHHH--STTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCCH--HHHHHC
T ss_conf 89999999999999999999999999999998347851799999-998622476779899999999861421--344302
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999989998999999998458667899999621689999999969989986200479999999612899999
Q gi|254780172|r 248 KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327 (386)
Q Consensus 248 ~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~I 327 (386)
....+++....+..+|..-.++++++++|+.+.|||+.+|.|+||++++|++|+..+..+-...-.++.-++|=....++
T Consensus 157 ~~~~~vi~~~~~~~pf~~~~~~~~l~~ip~~l~EAA~~dGAs~~~~f~~I~lPll~p~i~~~~~l~fi~~~~~f~~~~~~ 236 (296)
T 2r6g_G 157 NTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLL 236 (296)
T ss_dssp TSHHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 33699999999999989999999997340777888987599303324389984756899999999999999976888813
Q ss_pred H
Q ss_conf 9
Q gi|254780172|r 328 N 328 (386)
Q Consensus 328 g 328 (386)
+
T Consensus 237 ~ 237 (296)
T 2r6g_G 237 L 237 (296)
T ss_dssp C
T ss_pred C
T ss_conf 5
No 6
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=70.34 E-value=3.1 Score=18.99 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 89998999999998458667899999621689999999
Q gi|254780172|r 260 ASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 260 ~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
...+=.++++.+++...-.|.+||+.||+++..-.+++
T Consensus 48 ~~~~Er~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Kl 85 (91)
T 1ntc_A 48 QPELERTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999999968959999999798999999999
No 7
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=69.85 E-value=4.4 Score=18.07 Aligned_cols=37 Identities=16% Similarity=0.032 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9998999999998458667899999621689999999
Q gi|254780172|r 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 261 aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
...=-+.++.+++.-.-.|.+||+.||+++..-.+++
T Consensus 56 ~~~E~~~I~~aL~~~~gn~~~aA~~LGisR~tL~~kl 92 (98)
T 1eto_A 56 AEVEQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKL 92 (98)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999919988999999798999999999
No 8
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=68.24 E-value=4.7 Score=17.92 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 98999999998458667899999621689999999
Q gi|254780172|r 263 YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 263 y~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
.--|.++..|+.-.-.+.+||+.||+++...++++
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AAr~LGIsR~TLyrkl 75 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999972779999999798999999999
No 9
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=59.95 E-value=7.1 Score=16.84 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9998999999998458667899999621689999999
Q gi|254780172|r 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 261 aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
-.|-.|+++.+++.-.-.+.+||+.||+++..-++++
T Consensus 17 ~~~E~~~I~~aL~~~~gn~s~aA~~Lgi~r~tL~~kl 53 (63)
T 3e7l_A 17 KEFEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999919989999999897999999999
No 10
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=54.76 E-value=8.7 Score=16.31 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9998999999998458667899999621689999999
Q gi|254780172|r 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 261 aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
..|=-++++-+++.- .++.+||+.||+++...++++
T Consensus 19 ~~~Ek~~I~~aL~~~-g~~~~aA~~Lgisr~tL~rKl 54 (61)
T 1g2h_A 19 GFYEAQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp SHHHHHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999996-899999999797899999999
No 11
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=33.18 E-value=19 Score=14.25 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 98999999998458667899999621689999999
Q gi|254780172|r 263 YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386)
Q Consensus 263 y~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386)
+-.+++.-++.--...|.+||+.||+++..-+|++
T Consensus 268 ~E~~~I~~aL~~~~gn~~~aA~~LGisR~tLyrkl 302 (304)
T 1ojl_A 268 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 302 (304)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999929989999999888999999986
No 12
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=26.92 E-value=15 Score=14.86 Aligned_cols=31 Identities=42% Similarity=0.425 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 5866789999962168999999996998998620047
Q gi|254780172|r 275 ISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIV 311 (386)
Q Consensus 275 vp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~ 311 (386)
-+|.|--||+++|+|.-- +-..++.-+|-.+
T Consensus 12 edknqeyaaralglsqkl------ieevlkrglpvyv 42 (65)
T 2cw1_A 12 EDKNQEYAARALGLSQKL------IEEVLKRGLPVYV 42 (65)
T ss_dssp TTSCHHHHHHHSSSCHHH------HHHHHHTTCCCBC
T ss_pred HHHHHHHHHHHHCCHHHH------HHHHHHCCCCEEE
T ss_conf 600288999984116999------9999975995699
No 13
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 3kjl_E 3kik_E
Probab=22.15 E-value=23 Score=13.78 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999984337899
Q gi|254780172|r 368 SISLYSVFIEKTLHKGSKK 386 (386)
Q Consensus 368 ~ls~~~~~lE~rl~~~~rR 386 (386)
.-++++..|||=|++|.||
T Consensus 81 ~~~rfa~Hle~Cmg~gr~~ 99 (99)
T 3mhs_C 81 SANRLAAHLQRCLSRGARR 99 (99)
T ss_dssp EGGGHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 2777699999987425689
Done!