Query gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 386 No_of_seqs 227 out of 3276 Neff 6.0 Searched_HMMs 13730 Date Mon May 23 10:26:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780172.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d3dhwa1 f.58.1.1 (A:6-208) D-m 99.9 4.6E-24 3.3E-28 160.6 15.6 165 174-341 5-176 (203) 2 d2onkc1 f.58.1.1 (C:1-252) Mol 99.7 1.3E-16 9.7E-21 115.8 16.9 162 170-332 44-211 (252) 3 d3d31c1 f.58.1.1 (C:13-260) Su 99.7 1.5E-15 1.1E-19 109.4 19.4 165 170-335 42-214 (248) 4 d2r6gf2 f.58.1.1 (F:261-504) M 99.4 9.4E-13 6.8E-17 92.7 12.7 156 173-328 17-188 (244) 5 d2r6gg1 f.58.1.1 (G:7-296) Mal 99.4 2.8E-12 2E-16 89.9 11.4 154 172-328 74-231 (290) 6 d1etxa_ a.4.1.12 (A:) FIS prot 69.5 2.6 0.00019 18.0 3.9 37 261-297 47-83 (89) 7 d1ntca_ a.4.1.12 (A:) DNA-bind 62.9 3.1 0.00023 17.6 3.2 37 261-297 49-85 (91) 8 d1umqa_ a.4.1.12 (A:) Photosyn 61.2 3.9 0.00028 17.0 3.8 35 263-297 20-54 (60) 9 d1g2ha_ a.4.1.12 (A:) Transcri 41.7 8.1 0.00059 15.1 3.9 36 261-297 19-54 (61) 10 d1i3ja_ d.285.1.1 (A:) DNA-bin 19.8 20 0.0014 12.8 2.5 22 277-298 65-86 (96) No 1 >d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Probab=99.92 E-value=4.6e-24 Score=160.57 Aligned_cols=165 Identities=20% Similarity=0.280 Sum_probs=131.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 02478779999999999987567----754441---27868899978988887614722899999999766415588773 Q gi|254780172|r 174 WGGLLVTLVISFFGIIISMPLGI----LLALGR---NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFLPDTWDV 246 (386) Q Consensus 174 ~gGl~~Tl~l~~~~~~~~~~lG~----llal~r---~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~lp~g~~~ 246 (386) +.|+..|+.+++.+..+++++|+ +++..+ ..+.+.+......+++++|++|.++++++.+....... +.. T Consensus 5 l~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~--~~~- 81 (203) T d3dhwa1 5 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIV--GTS- 81 (203) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT--CCS- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCC- T ss_conf 99999999999999999999999999999998744432008999999999999999999999999998635540--454- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 87999999999998999899999999845866789999962168999999996998998620047999999961289999 Q gi|254780172|r 247 DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISI 326 (386) Q Consensus 247 ~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~ 326 (386) .....+++++++++.+|+.+++|+|++++|++|.|||+++|.|+||++++|++||+.+..+++..++++..+||++++.. T Consensus 82 ~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ 161 (203) T d3dhwa1 82 IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA 161 (203) T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 11999999999986489999999888843620689998869944424188409976999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999741 Q gi|254780172|r 327 INMFDLLGIVRVNFS 341 (386) Q Consensus 327 Ig~~el~~~~~~~~~ 341 (386) +|..|+.....+... T Consensus 162 ig~~~~~~~~~~~~~ 176 (203) T d3dhwa1 162 VGAGGLGQIGYQYGY 176 (203) T ss_dssp TTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 977599999999998 No 2 >d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} Probab=99.74 E-value=1.3e-16 Score=115.79 Aligned_cols=162 Identities=14% Similarity=0.221 Sum_probs=130.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----CCCC Q ss_conf 111002478779999999999987567754441-2786889997898888761472289999999976641-----5588 Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLF-----LPDT 243 (386) Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~-----lp~g 243 (386) +...|..+..|+.+++.+.++++++|+.+|+.- +.+.+ .|........+..-+|.++.-+.....+... .... T Consensus 44 ~~~~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~~~~-~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~~~~~~~~~ 122 (252) T d2onkc1 44 DPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFP-GKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPL 122 (252) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS-SHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCSS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 978999999999999999999999999999999873132-1689999987521687177777776412332100012454 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 77387999999999998999899999999845866789999962168999999996998998620047999999961289 Q gi|254780172|r 244 WDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSL 323 (386) Q Consensus 244 ~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL 323 (386) ...+.....+++.+....+|...++++|++++|+++.|||+++|.|++|++++|++|++.+..+.+..-.++..+||.+. T Consensus 123 ~~~~~~~~iii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~ 202 (252) T d2onkc1 123 KFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGA 202 (252) T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 42001332110100112110368999999750388887887669983325469870876889999999999889999888 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254780172|r 324 ISIINMFDL 332 (386) Q Consensus 324 ~~~Ig~~el 332 (386) ...+|-.+- T Consensus 203 ~~~~~~~~~ 211 (252) T d2onkc1 203 VVVIAYYPM 211 (252) T ss_dssp HHTTCCSSC T ss_pred HHHHCCCCC T ss_conf 751148985 No 3 >d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} Probab=99.71 E-value=1.5e-15 Score=109.38 Aligned_cols=165 Identities=17% Similarity=0.232 Sum_probs=131.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-C------C Q ss_conf 1110024787799999999999875677544412-786889997898888761472289999999976641-5------5 Q gi|254780172|r 170 ETSLWGGLLVTLVISFFGIIISMPLGILLALGRN-SNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLF-L------P 241 (386) Q Consensus 170 ~t~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~-s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~lp~~-l------p 241 (386) +.+.+..+..|+.+++.+..++.++|..+|.... ++.+ .|........+-..+|.++.-+.....+... . . T Consensus 42 ~~~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~~~~-~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~~~~~~~~~~ 120 (248) T d3d31c1 42 NRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFP-GKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLES 120 (248) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC T ss_conf 989999999999999999999999999999999864651-2568999999999999720002445203432111112222 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 88773879999999999989998999999998458667899999621689999999969989986200479999999612 Q gi|254780172|r 242 DTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDS 321 (386) Q Consensus 242 ~g~~~~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdT 321 (386) .....+.+...+++.+....+|....++++++++|+++.|||+++|.|+||++|+|++||+.+..+.+..-.++..++|. T Consensus 121 ~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~~~~~~~ 200 (248) T d3d31c1 121 YIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEF 200 (248) T ss_dssp TCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCC T ss_pred CCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 11245642001001101100368888899997103368999876310423477898899999999999999999999999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 89999999999999 Q gi|254780172|r 322 SLISIINMFDLLGI 335 (386) Q Consensus 322 sL~~~Ig~~el~~~ 335 (386) .....+|-...+.. T Consensus 201 ~~~~~l~~~~~~~~ 214 (248) T d3d31c1 201 GAVVILAYYPMVGP 214 (248) T ss_dssp HHHHHHHCTTCCHH T ss_pred HHHHHHCCCCCHHH T ss_conf 98873318984099 No 4 >d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Probab=99.45 E-value=9.4e-13 Score=92.69 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=116.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HH------HC--CCC Q ss_conf 0024787799999999999875677544412786889997898888761472289999999976-64------15--588 Q gi|254780172|r 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIML-PL------FL--PDT 243 (386) Q Consensus 173 ~~gGl~~Tl~l~~~~~~~~~~lG~llal~r~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~l-p~------~l--p~g 243 (386) .|.-+..|+..++.+.+++.++|..+|..-..+....|......+-+-.-+|.++.-+.....+ |. .+ ..+ T Consensus 17 ~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~~~l~~~~~ 96 (244) T d2r6gf2 17 FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFG 96 (244) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHHHHTSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC T ss_conf 99999999999999999999999999999984742047899999999998408899999999875235514666655302 Q ss_pred CCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 773-------8799999999999899989999999984586678999996216899999999699899862004799999 Q gi|254780172|r 244 WDV-------DKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIG 316 (386) Q Consensus 244 ~~~-------~~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~ 316 (386) ... ......+++......+|..-++++++++||+.++|||+..|-|+||++|+|++|+.....+...+-.++. T Consensus 97 ~~~~~~~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~p~i~~~~il~fi~ 176 (244) T d2r6gf2 97 VKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAF 176 (244) T ss_dssp CCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH T ss_conf 67741012779999999999997102779999999975999998999974997657749998544689999999999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 996128999999 Q gi|254780172|r 317 LFKDSSLISIIN 328 (386) Q Consensus 317 l~KdTsL~~~Ig 328 (386) .+||-....+++ T Consensus 177 ~~~~f~~~~~l~ 188 (244) T d2r6gf2 177 NFNNFVLIQLLT 188 (244) T ss_dssp HHTCHHHHHHHC T ss_pred HCCHHHHHHHHC T ss_conf 720056764425 No 5 >d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} Probab=99.38 E-value=2.8e-12 Score=89.88 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=110.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHCCCCCCCC Q ss_conf 1002478779999999999987567754441-278688999789888876147228999999997---664155887738 Q gi|254780172|r 172 SLWGGLLVTLVISFFGIIISMPLGILLALGR-NSNIPVLRYACITFIELFRGVPLVTVLFMASIM---LPLFLPDTWDVD 247 (386) Q Consensus 172 ~~~gGl~~Tl~l~~~~~~~~~~lG~llal~r-~s~~~~l~~~~~~~ie~~Rg~Pli~~lf~~~~~---lp~~lp~g~~~~ 247 (386) +.|..+..|+.+++.+.+++.++|+..|.+- +++.+.-+.. ........-+|.++........ +.... ..... T Consensus 74 ~~~~~~~nSl~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~-~~~~~~~~~~P~~v~~i~~~~~~~~~g~~~--~~~~~ 150 (290) T d2r6gg1 74 PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATL-LKGMLIFQMFPAVLSLVALYALFDRLGEYI--PFIGL 150 (290) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHH-HHHHHHTTSSCSSSHHHHHHHHHHHHHHHS--TTSST T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHEEEHHHCCCCCCCCC--CCCCC T ss_conf 799998766776654555665677778888887441357899-987641311231230100220113347756--62135 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 79999999999989998999999998458667899999621689999999969989986200479999999612899999 Q gi|254780172|r 248 KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327 (386) Q Consensus 248 ~~~~a~i~l~l~~aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~IilPQAlr~~iP~l~n~~i~l~KdTsL~~~I 327 (386) ....+++......-+|..-+++++++++|+.+.|||+.+|.|+||++++|++|+..+..+-...=.++..++|=....++ T Consensus 151 ~~~~~ii~~~~~~~pf~~~~~~~~l~~i~~~l~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~~~ 230 (290) T d2r6gg1 151 NTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLL 230 (290) T ss_dssp TSHHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHH T ss_pred CCHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEC T ss_conf 74134422235503642001320541111666656865399778888998888631256667878766441101144111 Q ss_pred H Q ss_conf 9 Q gi|254780172|r 328 N 328 (386) Q Consensus 328 g 328 (386) + T Consensus 231 ~ 231 (290) T d2r6gg1 231 L 231 (290) T ss_dssp C T ss_pred C T ss_conf 3 No 6 >d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]} Probab=69.51 E-value=2.6 Score=18.00 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 9998999999998458667899999621689999999 Q gi|254780172|r 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386) Q Consensus 261 aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386) .-+=.+.++.+++.-.--|.+||+.||+++..-.+++ T Consensus 47 ~e~E~~~i~~aL~~~~gn~~~aA~~LGisR~tL~~kl 83 (89) T d1etxa_ 47 AEVEQPLLDMVMQYTRGNATRAALMMGINRGTLRKKL 83 (89) T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999999929969999999897899999999 No 7 >d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Probab=62.87 E-value=3.1 Score=17.57 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 9998999999998458667899999621689999999 Q gi|254780172|r 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386) Q Consensus 261 aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386) ..+=-+.++.+++.-.-.|.+||+.||+++....+++ T Consensus 49 ~~~E~~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Kl 85 (91) T d1ntca_ 49 PELERTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91) T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999999959959999999798899999999 No 8 >d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Probab=61.18 E-value=3.9 Score=16.97 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 98999999998458667899999621689999999 Q gi|254780172|r 263 YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386) Q Consensus 263 y~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386) .--|.+..+++.-.-.+.+||+.||+|+..-++++ T Consensus 20 ~Er~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkm 54 (60) T d1umqa_ 20 VRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 54 (60) T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999999966859999999898899999999 No 9 >d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Probab=41.68 E-value=8.1 Score=15.07 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 9998999999998458667899999621689999999 Q gi|254780172|r 261 SAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLI 297 (386) Q Consensus 261 aAy~aEi~Rggl~svp~GQ~EAA~alGls~~q~~~~I 297 (386) ..|=-+.++.+++.- .+..+||+.||+++...++++ T Consensus 19 ~~~Er~~I~~aL~~~-gn~~~aA~~Lgisr~tL~rKl 54 (61) T d1g2ha_ 19 GFYEAQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKL 54 (61) T ss_dssp SHHHHHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHH T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHCCCHHHHHHHH T ss_conf 999999999999987-899999999798899999999 No 10 >d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]} Probab=19.77 E-value=20 Score=12.75 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=17.7 Q ss_pred HHHHHHHHHHCCHHHHHHHHHH Q ss_conf 6678999996216899999999 Q gi|254780172|r 277 KGQFEAANSLGLSYLQKMRLII 298 (386) Q Consensus 277 ~GQ~EAA~alGls~~q~~~~Ii 298 (386) ....|||++||.+...+.+++- T Consensus 65 ~S~~EAar~lgi~~~tI~~R~k 86 (96) T d1i3ja_ 65 DCAADAARHFKISSGLVTYRVK 86 (96) T ss_dssp SSHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHC T ss_conf 0699999994898378999975 Done!