RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] (386 letters) >gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease GltK; Provisional. Length = 224 Score = 111 bits (278), Expect = 4e-25 Identities = 67/213 (31%), Positives = 125/213 (58%), Gaps = 14/213 (6%) Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232 L GL++TL I+ ++I + G +LA+ R S+ + + ++ +FR +PLV VL Sbjct: 16 LLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWF 75 Query: 233 SIMLPLFLPDTWDVD-----KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLG 287 +++P FL + + +L+ A++ S F +AY +E++R G+QSIS+GQ AA +LG Sbjct: 76 YLIVPGFLQNVLGLSPKTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALG 135 Query: 288 LSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWIS 347 +++ Q M+LII+PQ + ++P ++ I LF+D+SL+ ++++ D F ++ I Sbjct: 136 MTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF-------FRTASTIG 188 Query: 348 SV--TPTTGLIFIGFVFWIFCFSISLYSVFIEK 378 T ++F GFV+++ S SL +++K Sbjct: 189 ERDGTQVEMILFAGFVYFVISLSASLLVSYLKK 221 >gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease; Provisional. Length = 220 Score = 107 bits (270), Expect = 4e-24 Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%) Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232 L G TL +S G+ + LG +LAL R S I +R+ ++ +FRG PL+ LFM Sbjct: 15 LLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMI 74 Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292 LP F ++D + A++G+S +AY AE LR + SI KGQ+EAA S+G++ Q Sbjct: 75 YYGLPQF---GIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQ 131 Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL 332 +R I+PQ + +P + N+FI L KD+SL + I + +L Sbjct: 132 TLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPEL 171 >gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter, permease protein EhuC. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous. Length = 214 Score = 107 bits (268), Expect = 6e-24 Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232 L G VT+ I+ G +++ L LGR S P+LR + +IE+FRG L+ LF Sbjct: 7 LLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWF 66 Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292 +LPL +D + ++ + A AY AE++RG L S+S Q EA +L + Q Sbjct: 67 YFVLPLI---GLSLDPVTTGVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQ 123 Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL 332 +R I +PQ + ++P N I L K +SL+S+I++ DL Sbjct: 124 TLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADL 163 >gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter, permease protein EhuD. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Length = 212 Score = 91.5 bits (227), Expect = 3e-19 Identities = 57/188 (30%), Positives = 101/188 (53%), Gaps = 13/188 (6%) Query: 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIM 235 GL +T++ + G I+ LG++ A+ R S + + +E RG PL+ L+ + Sbjct: 16 GLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYV 75 Query: 236 LPLF---LPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292 LP LP L+ +LG+ + Y AEV R G++++ +GQ+EAA +L L+ Q Sbjct: 76 LPDIGIRLP------ALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQ 129 Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPT 352 R II+PQ I +IP + N + +FK++ ++S I + +L+ + + ST+ + P Sbjct: 130 TYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELMNQAK-SIGNSTF-RYLEPM 187 Query: 353 T--GLIFI 358 T G+ F+ Sbjct: 188 TLVGVFFL 195 >gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed. Length = 219 Score = 83.6 bits (207), Expect = 9e-17 Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 1/160 (0%) Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232 L G +TL IS G+ + +G+L R + + + FIEL RG P+V + Sbjct: 15 LLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFI 74 Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292 LP+ D +D A++ + + AYIAE+ RG + SI KG EA +LGLS + Sbjct: 75 YFALPMAFNDL-RIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRE 133 Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL 332 +R +I P ++R++P + N +I KD+SL +I + +L Sbjct: 134 TLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVAEL 173 >gnl|CDD|182979 PRK11123, PRK11123, arginine transporter permease subunit ArtQ; Provisional. Length = 238 Score = 77.4 bits (191), Expect = 6e-15 Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 21/184 (11%) Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVP-LVTVL 229 L +T+ ++ +I+ + L +L A+ ++ + + + L RG+P ++ VL Sbjct: 5 FPLASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVL 64 Query: 230 FM--ASIMLPLFLPDTWDVDKLLRA---------------LLGVSAFA---SAYIAEVLR 269 F+ S L L L D + ++ L GV A + +AY ++ LR Sbjct: 65 FIYFGSSQLLLTLSDGFTLNLGFVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLR 124 Query: 270 GGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329 G L+++ GQ+E+ +LGLS ++MPQ+ + +PG+ N ++ L KD++L+S+I++ Sbjct: 125 GALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLISV 184 Query: 330 FDLL 333 DL+ Sbjct: 185 NDLM 188 >gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family. This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. Length = 99 Score = 75.6 bits (187), Expect = 2e-14 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232 L GLL+TL++S I++ + LG+LLAL R S LR+ ++ELFRG PL+ LF Sbjct: 5 LLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFI 64 Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRG 270 LPL + L A++ ++ F AY+AE+ RG Sbjct: 65 YFGLPLI---GIRLSPLTAAVIALTLFYGAYLAEIFRG 99 >gnl|CDD|182978 PRK11122, artM, arginine transporter permease subunit ArtM; Provisional. Length = 222 Score = 65.7 bits (161), Expect = 2e-11 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 18/174 (10%) Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFM- 231 L GL +L ++ +++++ L ++ + PVL + +I LF G PL+ +F+ Sbjct: 8 LLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLI 67 Query: 232 -----------ASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQF 280 L L W L A+L ++ ++AY ++ G +++I +GQ+ Sbjct: 68 YYGPGQFPWLQEYPWLWHLLSQPW-----LCAMLALALNSAAYSTQLFYGAVRAIPEGQW 122 Query: 281 EAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLG 334 ++ +LG+S Q +R I++P KR + N + +FK +SL I + D++G Sbjct: 123 QSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMDVMG 175 >gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional. Length = 228 Score = 64.0 bits (156), Expect = 6e-11 Identities = 45/178 (25%), Positives = 91/178 (51%), Gaps = 9/178 (5%) Query: 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIM 235 G LVTL ++ +++++ +G++ A G+ S +L + L RGVP + ++ + Sbjct: 12 GALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYG 71 Query: 236 LPLFLP--------DTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLG 287 L + L D+D ++ ++ + AY E RG ++ KG EAA + G Sbjct: 72 LQIALNSVTEALGVGQIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFG 131 Query: 288 LSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTW 345 + Q R I+ P +++ +PGI N + + K ++L+S++ + D++ ++ +STW Sbjct: 132 FTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLGLEDVVKATQLA-GKSTW 188 >gnl|CDD|185029 PRK15069, PRK15069, histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional. Length = 234 Score = 59.3 bits (144), Expect = 2e-09 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 7/169 (4%) Query: 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPL-VTVLFMASI 234 GL +TL + ++I L + LA+ R S+ +R+ + +FRG PL V +L + Sbjct: 22 GLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTG 81 Query: 235 MLPL-FLPDTWDVDKLLR-----ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGL 288 M L + T +D R +L + AY E+ G ++S+ G+ EAA + G+ Sbjct: 82 MYSLEIVRGTDLLDAFFRSGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGM 141 Query: 289 SYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVR 337 S + R II+P ++R +P N I + ++L + D+L I R Sbjct: 142 STFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFTATVPDILKIAR 190 >gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional. Length = 217 Score = 52.0 bits (125), Expect = 2e-07 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 10/144 (6%) Query: 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNI---PVLRYACITFIELFRGVPLVTV 228 +W L +T V FFG +I +P+G+LL + R I L + +FR +P + + Sbjct: 12 GVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIIL 71 Query: 229 LFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGL 288 L M+P L A++ ++ A+ +IA ++ L I G EA+ ++G Sbjct: 72 LVW---MIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128 Query: 289 SYLQKMRLIIMPQVIKRVIPGIVN 312 + +Q +R +++P+ +PG+VN Sbjct: 129 TPMQIVRKVLLPE----ALPGLVN 148 >gnl|CDD|162201 TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). Length = 250 Score = 44.1 bits (105), Expect = 6e-05 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 12/134 (8%) Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNI---PVLRYACITFIELFRGVPLVTVL 229 + LL TL ++ G +++ L + LAL NI P L + R +P L Sbjct: 56 ILKALLETLAMAILGTVLAAILALPLALLAARNITPSPWLSGLARLLLNFLRAIP---EL 112 Query: 230 FMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLS 289 A I + +L ++ ++ ++ ++ + G EA + G S Sbjct: 113 VWALIFVAAVGLGP------FAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGAS 166 Query: 290 YLQKMRLIIMPQVI 303 LQ +R ++PQV+ Sbjct: 167 KLQVIRYGVLPQVL 180 >gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. Length = 208 Score = 38.0 bits (89), Expect = 0.004 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 42/162 (25%) Query: 178 LVTLVISFFGIIISMPLGILLA--LGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIM 235 ++L ++ ++ +PLGI +A L R+ FRG PL+ VL ++ Sbjct: 1 WLSLKVAVIATLLLLPLGIPVAWWLARSR---------------FRGKPLLEVLVTLPLV 45 Query: 236 LP----------LFLPDTWDVDKLLRALLGVS---AFASAYIAEVL----------RGGL 272 LP F P+ + KLL L G+S FA A +A V+ R Sbjct: 46 LPPTVLGFYLLIAFGPNGP-IGKLLE-LFGISLVFTFAGAVLASVIVSFPLMVQPIRAAF 103 Query: 273 QSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF 314 +++ EAA +LG S +Q + +P ++ G V +F Sbjct: 104 EAVDPDLEEAARTLGASEIQTFLKVTLPLAFPGLLAGCVLSF 145 >gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity. Length = 225 Score = 37.4 bits (87), Expect = 0.006 Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 20/157 (12%) Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230 +L L +L +II +P +LA R +L T ++L P+V Sbjct: 21 KALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLD----TLLDL----PMVLPPL 72 Query: 231 MASIMLPLFLPDTWDVDKLLRALLGVSAF------------ASAYIAEVLRGGLQSISKG 278 +A + L L + L A F AS Y V R +S+ Sbjct: 73 VAGLALLLLFGRNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPR 132 Query: 279 QFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315 + A SLG L+ R I +P ++ G+V + Sbjct: 133 YEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWA 169 >gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. Length = 295 Score = 34.6 bits (80), Expect = 0.049 Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 17/187 (9%) Query: 142 FLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGL---LVTLVISFFGIIISMPLGILL 198 +I F I +F S +G L + TL+ S ++I++P+GI + Sbjct: 27 LYEAIPAFEKNGILNFLTGTVWDPGSGPVQEQYGALPLIVGTLITSLIALLIAVPVGIGI 86 Query: 199 ALGRNSNIP-VLRYACITFIELFRGVPLVTV-LFMASIMLPLFLPDTWDVDKL---LRAL 253 A+ + P +R +EL G+P V + +++P P L L Sbjct: 87 AIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSNLGLIPL 146 Query: 254 LGVSAFASA---------YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIK 304 G + IA + R L+++ + EA+ +LG + + +R +I+P Sbjct: 147 FGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARS 206 Query: 305 RVIPGIV 311 ++ +V Sbjct: 207 GIVGAVV 213 >gnl|CDD|182276 PRK10160, PRK10160, taurine transporter subunit; Provisional. Length = 275 Score = 33.6 bits (77), Expect = 0.084 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 14/130 (10%) Query: 181 LVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFL 240 ++ ++I +P+GI + L P +R IEL+R VP + L + I + Sbjct: 88 VLALLAAVVIGIPVGIAMGLS-----PTVRGILDPLIELYRPVPPLAYLPLMVIWFGI-- 140 Query: 241 PDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMP 300 + K+L L+ ++ FA ++ + G++S + + AA SLG S Q + +I+P Sbjct: 141 ---GETSKIL--LIYLAIFAPVAMSAL--AGVKSAQQVRIRAAQSLGASRAQVLWFVILP 193 Query: 301 QVIKRVIPGI 310 + ++ G+ Sbjct: 194 GALPEILTGL 203 >gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). Length = 312 Score = 29.6 bits (66), Expect = 1.3 Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 16/156 (10%) Query: 175 GGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACIT-FIELFRGVP--LVTVLF- 230 L TL I+F ++ LG LA IP I F++LF P L+ F Sbjct: 92 DALGNTLQIAFAAAAGALLLGSALAAIL-FFIPFPGAELIGRFLDLFIAFPSFLIAFAFI 150 Query: 231 --------MASIMLPLFLPDTWDVDKLLRA---LLGVSAFASAYIAEVLRGGLQSISKGQ 279 + ++ F D +D L A +L F + ++ L I K Sbjct: 151 FIYGSAGLLNGALMRAFAFDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRL 210 Query: 280 FEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315 EAA+ LG L +I P + + G + F+ Sbjct: 211 LEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFL 246 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 28.9 bits (65), Expect = 2.1 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 7/51 (13%) Query: 151 LFPIFSFFVLYGGLGLSIVE-------TSLWGGLLVTLVISFFGIIISMPL 194 FF+ + LG ++ ++ LL T+ +SF G++ Sbjct: 1220 WLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSR 1270 >gnl|CDD|181853 PRK09433, thiP, thiamine transporter membrane protein; Reviewed. Length = 525 Score = 27.9 bits (63), Expect = 4.2 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 28/174 (16%) Query: 147 LLFGLFPIFSFFV--LYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNS 204 LL L P+ + V L L + + +LW L +L I+ ++++ L ++L Sbjct: 289 LLLLLPPLLAVVVSGLNASLLRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRE 348 Query: 205 NIPVLRYACITFIELFRGVPLVTVLFMASIMLP--LFLPDTWDVDKLLRALLGVSAFASA 262 LR + + +L M I+L LFL LLR + A A Sbjct: 349 ----LRLRQRKLAAQALELSGMLILAMPGIVLATGLFL--------LLRNTTDLPASALG 396 Query: 263 ------------YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIK 304 Y VL ++ I+ SLG+ ++RLI + + + Sbjct: 397 IVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRR 450 Score = 27.5 bits (62), Expect = 6.0 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 271 GLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGI 310 L+SI Q + A LG+ Q RL+ P ++R +P + Sbjct: 151 ALESIPAEQRQLAAQLGMRGWQFFRLVEWP-YLRRQLPPV 189 >gnl|CDD|149206 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate catalyses the conversion of glucose-6- phosphate to inositol-1-phosphate, which is then dephosphorylated to inositol. Inositol phosphates play an important role in signal transduction. Length = 389 Score = 28.0 bits (63), Expect = 4.3 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%) Query: 96 WAFIYDRYEQFIFGNYPMAQRWRPILVFLTG--SILLTPMLI 135 D YE IF P I + T S+L P++I Sbjct: 305 SKVAMDEYESEIFLGGPNT-----IELHNTCEDSLLAAPLII 341 >gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit; Provisional. Length = 277 Score = 27.8 bits (62), Expect = 4.6 Identities = 10/35 (28%), Positives = 21/35 (60%) Query: 281 EAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315 EAA +LG + Q R +++P++ ++ G+ +F Sbjct: 172 EAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206 >gnl|CDD|185387 PRK15490, PRK15490, Vi polysaccharide biosynthesis protein TviE; Provisional. Length = 578 Score = 27.7 bits (61), Expect = 4.6 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 9 PYVRKRLLQPSLPPVYQ 25 P VRKRL +P P+YQ Sbjct: 316 PVVRKRLFKPEYEPLYQ 332 >gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein. This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. Length = 271 Score = 27.7 bits (62), Expect = 5.9 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 272 LQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF---IGLFKDSSLIS 325 L+ + EAA +LG S Q + +P + ++ G+V TF +G F ++S Sbjct: 165 LEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVS 221 >gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 761 Score = 27.6 bits (62), Expect = 6.3 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 10/62 (16%) Query: 147 LLFGLFPIFSFFVLYGGLGLSI------VETSLWGGLLVTLVISFFGIIISMPLGILLAL 200 LLFGLFP F L ++ V+ +LW G + L++S ++ LGI L L Sbjct: 449 LLFGLFPFFFHAALLSPAASAVLGEPVEVKLALWHGFNLPLLLSLLTLL----LGIGLYL 504 Query: 201 GR 202 R Sbjct: 505 LR 506 >gnl|CDD|162061 TIGR00837, araaP, aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. Length = 381 Score = 27.3 bits (61), Expect = 7.9 Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 149 FGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSN 205 +F FV + + L G ++ + F G++ + +LL + +++ Sbjct: 119 LIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVALDTS 175 >gnl|CDD|177842 PLN02190, PLN02190, cellulose synthase-like protein. Length = 756 Score = 26.7 bits (59), Expect = 9.9 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 7/53 (13%) Query: 19 SLPPVYQRGIIAWIHKNFFGTPKDILLTALIICLLLFSIPGIIHWVFLDAVWI 71 SLPP+ +R I+ HK++F D+ + L+ LLL+ I+H D VW+ Sbjct: 7 SLPPLCER--IS--HKSYFLRAVDLTILGLLFSLLLYR---ILHMSENDTVWL 52 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.147 0.466 Gapped Lambda K H 0.267 0.0734 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,626,733 Number of extensions: 457810 Number of successful extensions: 1649 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1611 Number of HSP's successfully gapped: 154 Length of query: 386 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 291 Effective length of database: 3,941,713 Effective search space: 1147038483 Effective search space used: 1147038483 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 58 (26.1 bits)