RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780172|ref|YP_003064585.1| general L-amino acid transport
system permease protein [Candidatus Liberibacter asiaticus str. psy62]
         (386 letters)



>gnl|CDD|185062 PRK15107, PRK15107, glutamate/aspartate transport system permease
           GltK; Provisional.
          Length = 224

 Score =  111 bits (278), Expect = 4e-25
 Identities = 67/213 (31%), Positives = 125/213 (58%), Gaps = 14/213 (6%)

Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232
           L  GL++TL I+   ++I +  G +LA+ R S+   + +    ++ +FR +PLV VL   
Sbjct: 16  LLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWF 75

Query: 233 SIMLPLFLPDTWDVD-----KLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLG 287
            +++P FL +   +      +L+ A++  S F +AY +E++R G+QSIS+GQ  AA +LG
Sbjct: 76  YLIVPGFLQNVLGLSPKTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALG 135

Query: 288 LSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWIS 347
           +++ Q M+LII+PQ  + ++P ++   I LF+D+SL+ ++++ D        F  ++ I 
Sbjct: 136 MTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF-------FRTASTIG 188

Query: 348 SV--TPTTGLIFIGFVFWIFCFSISLYSVFIEK 378
               T    ++F GFV+++   S SL   +++K
Sbjct: 189 ERDGTQVEMILFAGFVYFVISLSASLLVSYLKK 221


>gnl|CDD|185055 PRK15100, PRK15100, amino acid ABC transporter permease;
           Provisional.
          Length = 220

 Score =  107 bits (270), Expect = 4e-24
 Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232
           L  G   TL +S  G+   + LG +LAL R S I  +R+    ++ +FRG PL+  LFM 
Sbjct: 15  LLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMI 74

Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292
              LP F     ++D +  A++G+S   +AY AE LR  + SI KGQ+EAA S+G++  Q
Sbjct: 75  YYGLPQF---GIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQ 131

Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL 332
            +R  I+PQ  +  +P + N+FI L KD+SL + I + +L
Sbjct: 132 TLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPEL 171


>gnl|CDD|132049 TIGR03004, ectoine_ehuC, ectoine/hydroxyectoine ABC transporter,
           permease protein EhuC.  Members of this family are
           presumed to act as permease subunits of ectoine ABC
           transporters. Operons containing this gene also contain
           the other genes of the ABC transporter and typically are
           found next to either ectoine utilization or ectoine
           biosynthesis operons. Permease subunits EhuC and EhuD
           are homologous.
          Length = 214

 Score =  107 bits (268), Expect = 6e-24
 Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232
           L  G  VT+ I+  G +++  L     LGR S  P+LR   + +IE+FRG  L+  LF  
Sbjct: 7   LLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWF 66

Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292
             +LPL       +D +   ++ +   A AY AE++RG L S+S  Q EA  +L  +  Q
Sbjct: 67  YFVLPLI---GLSLDPVTTGVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQ 123

Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL 332
            +R I +PQ +  ++P   N  I L K +SL+S+I++ DL
Sbjct: 124 TLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADL 163


>gnl|CDD|132048 TIGR03003, ectoine_ehuD, ectoine/hydroxyectoine ABC transporter,
           permease protein EhuD.  Members of this family are
           presumed to act as permease subunits of ectoine ABC
           transporters. Operons containing this gene also contain
           the other genes of the ABC transporter and typically are
           found next to either ectoine utilization or ectoine
           biosynthesis operons.
          Length = 212

 Score = 91.5 bits (227), Expect = 3e-19
 Identities = 57/188 (30%), Positives = 101/188 (53%), Gaps = 13/188 (6%)

Query: 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIM 235
           GL +T++ +  G  I+  LG++ A+ R S    + +     +E  RG PL+  L+    +
Sbjct: 16  GLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYV 75

Query: 236 LPLF---LPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292
           LP     LP       L+  +LG+    + Y AEV R G++++ +GQ+EAA +L L+  Q
Sbjct: 76  LPDIGIRLP------ALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQ 129

Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPT 352
             R II+PQ I  +IP + N  + +FK++ ++S I + +L+   + +   ST+   + P 
Sbjct: 130 TYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELMNQAK-SIGNSTF-RYLEPM 187

Query: 353 T--GLIFI 358
           T  G+ F+
Sbjct: 188 TLVGVFFL 195


>gnl|CDD|181907 PRK09494, glnP, glutamine ABC transporter permease protein;
           Reviewed.
          Length = 219

 Score = 83.6 bits (207), Expect = 9e-17
 Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232
           L  G  +TL IS  G+   + +G+L    R     +  +  + FIEL RG P+V  +   
Sbjct: 15  LLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFI 74

Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQ 292
              LP+   D   +D    A++ +   + AYIAE+ RG + SI KG  EA  +LGLS  +
Sbjct: 75  YFALPMAFNDL-RIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRE 133

Query: 293 KMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDL 332
            +R +I P  ++R++P + N +I   KD+SL  +I + +L
Sbjct: 134 TLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVAEL 173


>gnl|CDD|182979 PRK11123, PRK11123, arginine transporter permease subunit ArtQ;
           Provisional.
          Length = 238

 Score = 77.4 bits (191), Expect = 6e-15
 Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 21/184 (11%)

Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVP-LVTVL 229
             L     +T+ ++   +I+ + L +L A+  ++    + +     + L RG+P ++ VL
Sbjct: 5   FPLASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVL 64

Query: 230 FM--ASIMLPLFLPDTWDVDKLLRA---------------LLGVSAFA---SAYIAEVLR 269
           F+   S  L L L D + ++                    L GV A +   +AY ++ LR
Sbjct: 65  FIYFGSSQLLLTLSDGFTLNLGFVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLR 124

Query: 270 GGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINM 329
           G L+++  GQ+E+  +LGLS       ++MPQ+ +  +PG+ N ++ L KD++L+S+I++
Sbjct: 125 GALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLISV 184

Query: 330 FDLL 333
            DL+
Sbjct: 185 NDLM 188


>gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease
           protein, 3-TM region, His/Glu/Gln/Arg/opine family.
           This model represents one of several classes of multiple
           membrane spanning regions found immediately N-terminal
           to the domain described by pfam00528,
           binding-protein-dependent transport systems inner
           membrane component. The region covered by this model
           generally is predicted to contain three transmembrane
           helices. Substrate specificities attributed to members
           of this family include histidine, arginine, glutamine,
           glutamate, and (in Agrobacterium) the opines octopine
           and nopaline.
          Length = 99

 Score = 75.6 bits (187), Expect = 2e-14
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMA 232
           L  GLL+TL++S   I++ + LG+LLAL R S    LR+    ++ELFRG PL+  LF  
Sbjct: 5   LLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFI 64

Query: 233 SIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRG 270
              LPL       +  L  A++ ++ F  AY+AE+ RG
Sbjct: 65  YFGLPLI---GIRLSPLTAAVIALTLFYGAYLAEIFRG 99


>gnl|CDD|182978 PRK11122, artM, arginine transporter permease subunit ArtM;
           Provisional.
          Length = 222

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 18/174 (10%)

Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFM- 231
           L  GL  +L ++   +++++ L ++  +      PVL +    +I LF G PL+  +F+ 
Sbjct: 8   LLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLI 67

Query: 232 -----------ASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQF 280
                          L   L   W     L A+L ++  ++AY  ++  G +++I +GQ+
Sbjct: 68  YYGPGQFPWLQEYPWLWHLLSQPW-----LCAMLALALNSAAYSTQLFYGAVRAIPEGQW 122

Query: 281 EAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLG 334
           ++  +LG+S  Q +R I++P   KR +    N  + +FK +SL   I + D++G
Sbjct: 123 QSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMDVMG 175


>gnl|CDD|185089 PRK15135, PRK15135, histidine/lysine/arginine/ornithine ABC
           transporter permease HisQ; Provisional.
          Length = 228

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 45/178 (25%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIM 235
           G LVTL ++   +++++ +G++ A G+ S   +L      +  L RGVP + ++ +    
Sbjct: 12  GALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYG 71

Query: 236 LPLFLP--------DTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLG 287
           L + L            D+D ++  ++ +     AY  E  RG   ++ KG  EAA + G
Sbjct: 72  LQIALNSVTEALGVGQIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFG 131

Query: 288 LSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTW 345
            +  Q  R I+ P +++  +PGI N +  + K ++L+S++ + D++   ++   +STW
Sbjct: 132 FTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLGLEDVVKATQLA-GKSTW 188


>gnl|CDD|185029 PRK15069, PRK15069, histidine/lysine/arginine/ornithine ABC
           transporter permease HisM; Provisional.
          Length = 234

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 176 GLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPL-VTVLFMASI 234
           GL +TL +    ++I   L + LA+ R S+   +R+    +  +FRG PL V +L   + 
Sbjct: 22  GLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTG 81

Query: 235 MLPL-FLPDTWDVDKLLR-----ALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGL 288
           M  L  +  T  +D   R      +L  +    AY  E+  G ++S+  G+ EAA + G+
Sbjct: 82  MYSLEIVRGTDLLDAFFRSGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGM 141

Query: 289 SYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVR 337
           S  +  R II+P  ++R +P   N  I +   ++L     + D+L I R
Sbjct: 142 STFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFTATVPDILKIAR 190


>gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit;
           Provisional.
          Length = 217

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 10/144 (6%)

Query: 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNI---PVLRYACITFIELFRGVPLVTV 228
            +W  L +T V  FFG +I +P+G+LL + R   I     L       + +FR +P + +
Sbjct: 12  GVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIIL 71

Query: 229 LFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGL 288
           L     M+P           L  A++ ++  A+ +IA ++   L  I  G  EA+ ++G 
Sbjct: 72  LVW---MIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128

Query: 289 SYLQKMRLIIMPQVIKRVIPGIVN 312
           + +Q +R +++P+     +PG+VN
Sbjct: 129 TPMQIVRKVLLPE----ALPGLVN 148


>gnl|CDD|162201 TIGR01097, PhnE, phosphonate ABC transporter, permease protein
           PhnE.  Phosphonates are a class of compound analogous to
           organic phosphates, but in which the C-O-P linkage is
           replaced by a direct, stable C-P bond. Some bacteria can
           utilize phosphonates as a source of phosphorus. This
           family consists of permease proteins of known or
           predicted phosphonate ABC transporters. Often this
           protein is found as a duplicated pair, occasionally as a
           fused pair. Certain "second" copies score in between the
           trusted and noise cutoff and should be considered true
           hits (by context).
          Length = 250

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 12/134 (8%)

Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNI---PVLRYACITFIELFRGVPLVTVL 229
           +   LL TL ++  G +++  L + LAL    NI   P L       +   R +P    L
Sbjct: 56  ILKALLETLAMAILGTVLAAILALPLALLAARNITPSPWLSGLARLLLNFLRAIP---EL 112

Query: 230 FMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLS 289
             A I +                +L ++     ++ ++    ++ +  G  EA  + G S
Sbjct: 113 VWALIFVAAVGLGP------FAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGAS 166

Query: 290 YLQKMRLIIMPQVI 303
            LQ +R  ++PQV+
Sbjct: 167 KLQVIRYGVLPQVL 180


>gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein.
           Molybdate is chemically similar to sulfate, thiosulfate,
           and selenate. These related substrates, and sometimes
           molybdate itself, can be transported by the homologous
           sulfate receptor. Some apparent molybdenum transport
           operons include a permease related to this ModB,
           although less similar than some sulfate permease
           proteins and not included in this model.
          Length = 208

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 42/162 (25%)

Query: 178 LVTLVISFFGIIISMPLGILLA--LGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIM 235
            ++L ++    ++ +PLGI +A  L R+                FRG PL+ VL    ++
Sbjct: 1   WLSLKVAVIATLLLLPLGIPVAWWLARSR---------------FRGKPLLEVLVTLPLV 45

Query: 236 LP----------LFLPDTWDVDKLLRALLGVS---AFASAYIAEVL----------RGGL 272
           LP           F P+   + KLL  L G+S    FA A +A V+          R   
Sbjct: 46  LPPTVLGFYLLIAFGPNGP-IGKLLE-LFGISLVFTFAGAVLASVIVSFPLMVQPIRAAF 103

Query: 273 QSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF 314
           +++     EAA +LG S +Q    + +P     ++ G V +F
Sbjct: 104 EAVDPDLEEAARTLGASEIQTFLKVTLPLAFPGLLAGCVLSF 145


>gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter.  Included in
           this group is a gene designated NifC in Clostridium
           pasturianum. It would be reasonable to presume that NifC
           acts as a molybdate porter since the most common form of
           nitrogenase is a molybdoenzyme. Several other sequences
           falling within the scope of this model are annotated as
           molybdate porters and one, from Halobacterium, is
           annotated as a sulfate porter. There is presently no
           experimental evidence to support annotations with this
           degree of specificity.
          Length = 225

 Score = 37.4 bits (87), Expect = 0.006
 Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230
            +L   L  +L      +II +P   +LA  R     +L     T ++L    P+V    
Sbjct: 21  KALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLD----TLLDL----PMVLPPL 72

Query: 231 MASIMLPLFLPDTWDVDKLLRALLGVSAF------------ASAYIAEVLRGGLQSISKG 278
           +A + L L       +   L A      F            AS Y   V R   +S+   
Sbjct: 73  VAGLALLLLFGRNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPR 132

Query: 279 QFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315
             + A SLG   L+  R I +P     ++ G+V  + 
Sbjct: 133 YEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWA 169


>gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease
           protein PstC.  The typical operon for the high affinity
           inorganic phosphate ABC transporter encodes an
           ATP-binding protein, a phosphate-binding protein, and
           two permease proteins. This family consists of one of
           the two permease proteins, PstC, which is homologous to
           PstA (TIGR00974). In the model bacterium Escherichia
           coli, this transport system is induced when the
           concentration of extrallular inorganic phosphate is low.
           A constitutive, lower affinity transporter operates
           otherwise.
          Length = 295

 Score = 34.6 bits (80), Expect = 0.049
 Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 17/187 (9%)

Query: 142 FLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGL---LVTLVISFFGIIISMPLGILL 198
              +I  F    I +F         S      +G L   + TL+ S   ++I++P+GI +
Sbjct: 27  LYEAIPAFEKNGILNFLTGTVWDPGSGPVQEQYGALPLIVGTLITSLIALLIAVPVGIGI 86

Query: 199 ALGRNSNIP-VLRYACITFIELFRGVPLVTV-LFMASIMLPLFLPDTWDVDKL---LRAL 253
           A+  +   P  +R      +EL  G+P V    +   +++P   P           L  L
Sbjct: 87  AIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSNLGLIPL 146

Query: 254 LGVSAFASA---------YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIK 304
            G     +           IA + R  L+++ +   EA+ +LG +  + +R +I+P    
Sbjct: 147 FGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARS 206

Query: 305 RVIPGIV 311
            ++  +V
Sbjct: 207 GIVGAVV 213


>gnl|CDD|182276 PRK10160, PRK10160, taurine transporter subunit; Provisional.
          Length = 275

 Score = 33.6 bits (77), Expect = 0.084
 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 14/130 (10%)

Query: 181 LVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFL 240
           ++     ++I +P+GI + L      P +R      IEL+R VP +  L +  I   +  
Sbjct: 88  VLALLAAVVIGIPVGIAMGLS-----PTVRGILDPLIELYRPVPPLAYLPLMVIWFGI-- 140

Query: 241 PDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMP 300
               +  K+L  L+ ++ FA   ++ +   G++S  + +  AA SLG S  Q +  +I+P
Sbjct: 141 ---GETSKIL--LIYLAIFAPVAMSAL--AGVKSAQQVRIRAAQSLGASRAQVLWFVILP 193

Query: 301 QVIKRVIPGI 310
             +  ++ G+
Sbjct: 194 GALPEILTGL 203


>gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease
           protein.  This ABC transporter permease
           (membrane-spanning) component is found in a region of
           the salmonella typhimurium LT2 genome responsible for
           the catabolism of 2-aminoethylphosphonate via the phnWX
           pathway (GenProp0238).
          Length = 312

 Score = 29.6 bits (66), Expect = 1.3
 Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 16/156 (10%)

Query: 175 GGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACIT-FIELFRGVP--LVTVLF- 230
             L  TL I+F     ++ LG  LA      IP      I  F++LF   P  L+   F 
Sbjct: 92  DALGNTLQIAFAAAAGALLLGSALAAIL-FFIPFPGAELIGRFLDLFIAFPSFLIAFAFI 150

Query: 231 --------MASIMLPLFLPDTWDVDKLLRA---LLGVSAFASAYIAEVLRGGLQSISKGQ 279
                   +   ++  F  D   +D L  A   +L    F + ++   L      I K  
Sbjct: 151 FIYGSAGLLNGALMRAFAFDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAAFAQIDKRL 210

Query: 280 FEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315
            EAA+ LG   L     +I P  +  +  G +  F+
Sbjct: 211 LEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFL 246


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
            
          Length = 1394

 Score = 28.9 bits (65), Expect = 2.1
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 7/51 (13%)

Query: 151  LFPIFSFFVLYGGLGLSIVE-------TSLWGGLLVTLVISFFGIIISMPL 194
                  FF+ +  LG  ++         ++   LL T+ +SF G++     
Sbjct: 1220 WLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSR 1270


>gnl|CDD|181853 PRK09433, thiP, thiamine transporter membrane protein; Reviewed.
          Length = 525

 Score = 27.9 bits (63), Expect = 4.2
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 147 LLFGLFPIFSFFV--LYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNS 204
           LL  L P+ +  V  L   L   + + +LW  L  +L I+    ++++ L ++L      
Sbjct: 289 LLLLLPPLLAVVVSGLNASLLRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRE 348

Query: 205 NIPVLRYACITFIELFRGVPLVTVLFMASIMLP--LFLPDTWDVDKLLRALLGVSAFASA 262
               LR            +  + +L M  I+L   LFL        LLR    + A A  
Sbjct: 349 ----LRLRQRKLAAQALELSGMLILAMPGIVLATGLFL--------LLRNTTDLPASALG 396

Query: 263 ------------YIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIK 304
                       Y   VL   ++ I+        SLG+    ++RLI +  + +
Sbjct: 397 IVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRR 450



 Score = 27.5 bits (62), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 271 GLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGI 310
            L+SI   Q + A  LG+   Q  RL+  P  ++R +P +
Sbjct: 151 ALESIPAEQRQLAAQLGMRGWQFFRLVEWP-YLRRQLPPV 189


>gnl|CDD|149206 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase.  This
           is a family of myo-inositol-1-phosphate synthases.
           Inositol-1-phosphate catalyses the conversion of
           glucose-6- phosphate to inositol-1-phosphate, which is
           then dephosphorylated to inositol. Inositol phosphates
           play an important role in signal transduction.
          Length = 389

 Score = 28.0 bits (63), Expect = 4.3
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)

Query: 96  WAFIYDRYEQFIFGNYPMAQRWRPILVFLTG--SILLTPMLI 135
                D YE  IF   P       I +  T   S+L  P++I
Sbjct: 305 SKVAMDEYESEIFLGGPNT-----IELHNTCEDSLLAAPLII 341


>gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit;
           Provisional.
          Length = 277

 Score = 27.8 bits (62), Expect = 4.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 281 EAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFI 315
           EAA +LG +  Q  R +++P++   ++ G+  +F 
Sbjct: 172 EAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206


>gnl|CDD|185387 PRK15490, PRK15490, Vi polysaccharide biosynthesis protein TviE;
           Provisional.
          Length = 578

 Score = 27.7 bits (61), Expect = 4.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 9   PYVRKRLLQPSLPPVYQ 25
           P VRKRL +P   P+YQ
Sbjct: 316 PVVRKRLFKPEYEPLYQ 332


>gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein.
           This model describes a subfamily of both CysT and CysW,
           paralogous and generally tandemly encoded permease
           proteins of the sulfate ABC transporter.
          Length = 271

 Score = 27.7 bits (62), Expect = 5.9
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 272 LQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTF---IGLFKDSSLIS 325
           L+ +     EAA +LG S  Q    + +P +   ++ G+V TF   +G F    ++S
Sbjct: 165 LEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVS 221


>gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 761

 Score = 27.6 bits (62), Expect = 6.3
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 147 LLFGLFPIFSFFVLYGGLGLSI------VETSLWGGLLVTLVISFFGIIISMPLGILLAL 200
           LLFGLFP F    L      ++      V+ +LW G  + L++S   ++    LGI L L
Sbjct: 449 LLFGLFPFFFHAALLSPAASAVLGEPVEVKLALWHGFNLPLLLSLLTLL----LGIGLYL 504

Query: 201 GR 202
            R
Sbjct: 505 LR 506


>gnl|CDD|162061 TIGR00837, araaP, aromatic amino acid transport protein.  aromatic
           amino acid transporters and includes the tyrosine
           permease, TyrP, of E. coli, and the tryptophan
           transporters TnaB and Mtr of E. coli.
          Length = 381

 Score = 27.3 bits (61), Expect = 7.9
 Identities = 9/57 (15%), Positives = 23/57 (40%)

Query: 149 FGLFPIFSFFVLYGGLGLSIVETSLWGGLLVTLVISFFGIIISMPLGILLALGRNSN 205
                +F  FV      +  +   L  G ++   + F G++  +   +LL +  +++
Sbjct: 119 LIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDLLLDVALDTS 175


>gnl|CDD|177842 PLN02190, PLN02190, cellulose synthase-like protein.
          Length = 756

 Score = 26.7 bits (59), Expect = 9.9
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 19 SLPPVYQRGIIAWIHKNFFGTPKDILLTALIICLLLFSIPGIIHWVFLDAVWI 71
          SLPP+ +R  I+  HK++F    D+ +  L+  LLL+    I+H    D VW+
Sbjct: 7  SLPPLCER--IS--HKSYFLRAVDLTILGLLFSLLLYR---ILHMSENDTVWL 52


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.147    0.466 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,626,733
Number of extensions: 457810
Number of successful extensions: 1649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 154
Length of query: 386
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 291
Effective length of database: 3,941,713
Effective search space: 1147038483
Effective search space used: 1147038483
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)