RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] (386 letters) >3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:) Length = 217 Score = 77.3 bits (190), Expect = 3e-15 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 12/220 (5%) Query: 166 LSIVETSLWGGLLVTLVISFFGIIISMPLGILLAL---GRNSNIPVLRYACITFIELFRG 222 + ++ +W L +T V FFG +I +P+G+LL + G+ L + +FR Sbjct: 6 MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRS 65 Query: 223 VPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEA 282 +P + +L + + L A++ ++ A+ +IA ++ L I G EA Sbjct: 66 IPFIILLVWMIPFTRVIV---GTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEA 122 Query: 283 ANSLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSE 342 + ++G + +Q +R +++P+ + ++ T I L S++ + L I Sbjct: 123 SRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYI 182 Query: 343 STWISSVTPTTGLIFIGFVFWIFCFSISLYSVFIEKTLHK 382 T + + + I + I I + + + Sbjct: 183 GYN------ATVMNTVLVLLVILVYLIQFAGDRIVRAVTR 216 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:269-326,F:360-453) Length = 152 Score = 65.2 bits (159), Expect = 2e-11 Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 19/159 (11%) Query: 170 ETSLWGGLLVTLVISFFGIIISMPLGILLA-LGRNSNIPVLRYACITFIELFRGVPLVTV 228 + + T+V S + +++ +G++LA L + + Sbjct: 6 QKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKA------------------ 47 Query: 229 LFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGL 288 ++ ++LP + ++ + Y+ + G L++I +EA+ G Sbjct: 48 VYRVLLILPYAAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGA 107 Query: 289 SYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327 Q I +P +IK + P ++ +F F + LI ++ Sbjct: 108 GPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLL 146 >3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (C:) Length = 295 Score = 64.4 bits (156), Expect = 3e-11 Identities = 37/261 (14%), Positives = 88/261 (33%), Gaps = 11/261 (4%) Query: 112 PMAQRWRPILVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVET 171 M + R F + + + +L+ F L L + GL + Sbjct: 23 HMKAKNRKTRKFEPLTFVFSFLLLVLF----LFIFLTLSNMIFEQITEDFSGLVKAAGNR 78 Query: 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFM 231 S+ + ++L F ++++ LG + + I++ VP Sbjct: 79 SVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIA 138 Query: 232 ASIMLPLFLPDTWDVDKLLR-------ALLGVSAFASAYIAEVLRGGLQSISKGQFEAAN 284 + ++ ++ ++ + + Y+A R G +S+ AA Sbjct: 139 LLTVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAAR 198 Query: 285 SLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSEST 344 SLG + + +P + ++ G V T+ + + I+ + ++G + + Sbjct: 199 SLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVGPTLIYDRFIS 258 Query: 345 WISSVTPTTGLIFIGFVFWIF 365 + S + ++ I IF Sbjct: 259 YGLSASRPIAVLLILVTLSIF 279 >2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} (C:69-249) Length = 181 Score = 62.6 bits (152), Expect = 8e-11 Identities = 22/161 (13%), Positives = 55/161 (34%), Gaps = 5/161 (3%) Query: 172 SLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFM 231 ++W +L T + +I++ G LA + ++L +P Sbjct: 1 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIA 60 Query: 232 ASIMLPLFLPDTWD-----VDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSL 286 ++ VD L ++ + + + G S+ A +L Sbjct: 61 LLVVFGSSGLIGSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTL 120 Query: 287 GLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327 G S L+ + +P ++ ++ G + ++ + + +I Sbjct: 121 GSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVI 161 >2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:73-244) Length = 172 Score = 57.2 bits (138), Expect = 3e-09 Identities = 21/156 (13%), Positives = 59/156 (37%), Gaps = 1/156 (0%) Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVP-LVTVLFM 231 + L ++ ++ I + L A + + + +F+ P +++++ + Sbjct: 9 VLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVAL 68 Query: 232 ASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYL 291 ++ L + ++ A ++G ++I EAA G + Sbjct: 69 YALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPW 128 Query: 292 QKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISII 327 Q RL+++P + + + +FI + + S++ Sbjct: 129 QAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLL 164 >1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} (A:434-602) Length = 169 Score = 27.8 bits (62), Expect = 2.3 Identities = 10/29 (34%), Positives = 13/29 (44%) Query: 169 VETSLWGGLLVTLVISFFGIIISMPLGIL 197 ET + G LV F I+ LGI+ Sbjct: 116 TETIIAGNAATALVALVFSILTGSALGII 144 >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} (A:51-98,A:292-392) Length = 149 Score = 27.7 bits (62), Expect = 2.4 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%) Query: 304 KRVIPGIVNTFI---GLFKDSSLISIIN-MFDLLGIVRV 338 K +P + T GL K S L II ++ L ++ Sbjct: 30 KSRVPAFL-TVFDIAGLTKGSXLPKIIVTGYNALNLINY 67 >2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli} (A:) Length = 191 Score = 27.4 bits (61), Expect = 2.9 Identities = 6/29 (20%), Positives = 11/29 (37%) Query: 169 VETSLWGGLLVTLVISFFGIIISMPLGIL 197 +E + +V F ++ LGI Sbjct: 136 LEKKAADAGVSYVVALLFSLLAGTTLGIW 164 >3cin_A Myo-Inositol-1-Phosphate Synthase- Related Protein (Tm1419) {Thermotoga Maritima} (A:) Length = 394 Score = 27.1 bits (60), Expect = 3.6 Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 7/42 (16%) Query: 96 WAFIYDRYEQFIFGNYPMAQRWRPILVFLTG--SILLTPMLI 135 FI E F +++ S L +L+ Sbjct: 301 KKFIAIHIEYVSFNGATDE-----LMINGRINDSPALGGLLV 337 >1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} (A:290-511) Length = 222 Score = 26.3 bits (58), Expect = 7.7 Identities = 6/30 (20%), Positives = 13/30 (43%) Query: 169 VETSLWGGLLVTLVISFFGIIISMPLGILL 198 VE+ + G+ + +S F + + L Sbjct: 158 VESWVISGMASAVALSLFSLTLGSALIAFG 187 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.331 0.147 0.466 Gapped Lambda K H 0.267 0.0361 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,011,727 Number of extensions: 135049 Number of successful extensions: 461 Number of sequences better than 10.0: 1 Number of HSP's gapped: 451 Number of HSP's successfully gapped: 34 Length of query: 386 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 296 Effective length of database: 1,913,599 Effective search space: 566425304 Effective search space used: 566425304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 55 (26.0 bits)