BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780172|ref|YP_003064585.1| general L-amino acid transport
system permease protein [Candidatus Liberibacter asiaticus str. psy62]
(386 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 386
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MIDSCKEFPYVRKRLLQPSLPPVYQRGIIAWIHKNFFGTPKDILLTALIICLLLFSIPGI 60
MIDSCKEFPYVRKRLLQPSLPPVYQRGIIAWIHKNFFGTPKDILLTALIICLLLFSIPGI
Sbjct: 1 MIDSCKEFPYVRKRLLQPSLPPVYQRGIIAWIHKNFFGTPKDILLTALIICLLLFSIPGI 60
Query: 61 IHWVFLDAVWIGSNRTVCTTVSQGGIQPDGWNAACWAFIYDRYEQFIFGNYPMAQRWRPI 120
IHWVFLDAVWIGSNRTVCTTVSQGGIQPDGWNAACWAFIYDRYEQFIFGNYPMAQRWRPI
Sbjct: 61 IHWVFLDAVWIGSNRTVCTTVSQGGIQPDGWNAACWAFIYDRYEQFIFGNYPMAQRWRPI 120
Query: 121 LVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVT 180
LVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVT
Sbjct: 121 LVFLTGSILLTPMLIPSFPRKFLNSILLFGLFPIFSFFVLYGGLGLSIVETSLWGGLLVT 180
Query: 181 LVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFL 240
LVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFL
Sbjct: 181 LVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLFMASIMLPLFL 240
Query: 241 PDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMP 300
PDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMP
Sbjct: 241 PDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMP 300
Query: 301 QVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGF 360
QVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGF
Sbjct: 301 QVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSESTWISSVTPTTGLIFIGF 360
Query: 361 VFWIFCFSISLYSVFIEKTLHKGSKK 386
VFWIFCFSISLYSVFIEKTLHKGSKK
Sbjct: 361 VFWIFCFSISLYSVFIEKTLHKGSKK 386
>gi|254780171|ref|YP_003064584.1| ABC transporter membrane spanning protein (amino acid) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 398
Score = 70.1 bits (170), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 57/82 (69%)
Query: 254 LGVSAFASAYIAEVLRGGLQSISKGQFEAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313
+ +S + +A+IAE++R GL ++ +GQ EAA +LGL++ + RL+++PQ ++ +IP + +
Sbjct: 271 IALSCYTAAFIAEIVRSGLIAVPRGQMEAAIALGLTHRKATRLVLLPQAMRSIIPPLTSQ 330
Query: 314 FIGLFKDSSLISIINMFDLLGI 335
++ L K+SSL + DL+ +
Sbjct: 331 YLNLLKNSSLAVAVGFADLVSV 352
Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 171 TSLWGGLLVTLVISFFGIIISMPLGILLALGRNSNIPVLRYACITFIELFRGVPLVTVLF 230
T++ G + T ++F G+I + +G L+ GR S ++ + C ++E+FR +P + V+F
Sbjct: 87 TAILVGFVNTFWLAFSGMIPATIIGTLVGAGRLSANKLVAWICRVYVEVFRNIPPLVVIF 146
Query: 231 M--ASIMLPLFLPD 242
S++ L +PD
Sbjct: 147 FLYKSVLSVLPIPD 160
>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter
asiaticus str. psy62]
Length = 226
Score = 52.0 bits (123), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 112/212 (52%), Gaps = 30/212 (14%)
Query: 173 LWGGLLVTLVISFFGIIISMPLGILLALGR----NSNIPVLRYACITFIELFRGVPLVTV 228
L+ ++VTL I+ +IS+ +G +A+ R ++ I ++ + ++ +FRG PL+
Sbjct: 17 LYAAIVVTLPIACISFVISLIIGFFIAVIRIFFSDTIISLIMHF---YVWIFRGTPLLVQ 73
Query: 229 LFMASIMLP----LFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQFEAAN 284
LF+ LP +F D + ++ ++ SAYI+E++R + SI KGQ++A+
Sbjct: 74 LFVIFYGLPHIGIVF-------DSFVAIIISLTLNFSAYISEIIRSSIISIPKGQWDASY 126
Query: 285 SLGLSYLQKMRLIIMPQVIKRVIPGIVNTFIGLFKDSSLISIINMFDLLGIVRVNFSEST 344
++GL+ Q +R II+PQ I + + FI + K +S+ S I + ++ F +
Sbjct: 127 AIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEI-------FQTAQ 179
Query: 345 WISSVTPTTGLIF--IGFVFWI---FCFSISL 371
I S T +I+ + FV+ I FC+ I +
Sbjct: 180 RIVSTTYQPLIIYCELAFVYLILTSFCYIIQI 211
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 29.3 bits (64), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 16/153 (10%)
Query: 177 LLVTLVISFFGIIISMPLGILLALGRNSNIP-VLRYACITFIELFRGVPLVTVLFMASIM 235
L+ T I F ++ S+P+G+L+A+ P LR E+ G+P + F A +
Sbjct: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL 316
Query: 236 LPLFLPDTW---------------DVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQF 280
+ FL D + +L A L + Y++ + + SI +
Sbjct: 317 VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLR 376
Query: 281 EAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313
+ + LG + + M+ +I P + I+ T
Sbjct: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMT 409
>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 563
Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 244 WDVDKLLRALLGVSAFASAYIAE 266
+++K L A LGV F SA +AE
Sbjct: 243 MNINKALAAFLGVDNFRSAVVAE 265
>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 586
Score = 24.6 bits (52), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 122 VFLTGSILLTPMLIPSFPRKFLNSILLFGL 151
VF+ G + L PS+ RK L+SI++ G+
Sbjct: 81 VFIAGKGFINLYLSPSYLRKILSSIVVSGI 110
>gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Length = 320
Score = 23.9 bits (50), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 186 FGIIISMPLGILLALGRNSNIPVLRYACITFI 217
FG+ + ++L +S +P+LRYA ++ I
Sbjct: 161 FGVSVESVTALVLGSHGDSMVPMLRYATVSGI 192
>gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H [Candidatus Liberibacter asiaticus
str. psy62]
Length = 348
Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 219 LFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKG 278
LF PLV+V+ S + + D W + + +L + A +S I ++ GG S SK
Sbjct: 83 LFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKY 142
Query: 279 QFEAA 283
F A
Sbjct: 143 AFLGA 147
>gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 362
Score = 23.1 bits (48), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 187 GIIISMPLGILLALGRNSNIPV 208
GI +S PLG+ +N+ +P+
Sbjct: 51 GISLSNPLGMAAGYDKNAEVPI 72
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.331 0.147 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 255,400
Number of Sequences: 1233
Number of extensions: 11016
Number of successful extensions: 50
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 15
length of query: 386
length of database: 328,796
effective HSP length: 76
effective length of query: 310
effective length of database: 235,088
effective search space: 72877280
effective search space used: 72877280
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 39 (19.6 bits)