RPSBLAST alignment for GI: 254780173 and conserved domain: TIGR01193
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708
Score = 116 bits (293), Expect = 5e-27
Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 24/239 (10%)
Query: 15 NFAVEIKFLNKWYG-NFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGE 73
N + I ++ YG + L DI+L + + I G SGSGKSTL + + + ++GE
Sbjct: 471 NGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530
Query: 74 IIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP--------IW--VRK 123
I++NG L DI + H +R+ + + Q +FS S+LEN LG IW
Sbjct: 531 ILLNGFSL-KDI-DRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEI 587
Query: 124 MP-KKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSA 182
K D E + + Y ++ S +SGG+ QR A+AR+L K+++ DE TS
Sbjct: 588 AEIKDDIENMPLGYQTELSE------EGSSISGGQKQRIALARALLTDSKVLILDESTSN 641
Query: 183 LDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
LD K++++ ++ L ++ T++ V H + A+Q D+++ +D G+I+EQ S +E +
Sbjct: 642 LDTITEKKIVNNLLNLQDK--TIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGSHDELLD 697