RPSBLAST alignment for GI: 254780173 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 64.9 bits (158), Expect = 2e-11
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 25/208 (12%)
Query: 22 FLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPL 81
+ K G F L ++ E + I GP+G GK+T I+ + + K G+I I L
Sbjct: 5 TMKKTLGEFT-LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI---EIEL 60
Query: 82 NDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVK 141
+ ++ D + L S + ++ P + ++ ++
Sbjct: 61 DTVSYKPQYIKADYEGTVRDL-LSS---ITKDFYTHPYFKTEI------------AKPLQ 104
Query: 142 IADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE---MVKEVLDIMIEL 198
I R LSGGE QR AIA L I L DEP++ LD E M +V+ E
Sbjct: 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164
Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMD 226
E+ T V H++ +ADR++ +
Sbjct: 165 NEK--TAFVVEHDIIMIDYLADRLIVFE 190