RPSBLAST alignment for GI: 254780173 and conserved domain: cd03251

>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234
 Score =  122 bits (307), Expect = 1e-28
 Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 27/220 (12%)

Query: 32  ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI--H 89
            LRDI+L++  GE V + GPSGSGKSTL+  I       +G I+I+G     D+R+    
Sbjct: 17  VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGH----DVRDYTLA 72

Query: 90  EVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEE-----LAMHYLNKV---- 140
            +RR +G+V Q   LF++ +V EN   G        +++ EE      A  ++ ++    
Sbjct: 73  SLRRQIGLVSQDVFLFND-TVAENIAYG---RPGATREEVEEAARAANAHEFIMELPEGY 128

Query: 141 --KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
              I ++       LSGG+ QR AIAR+L   P I++ DE TSALD E  + V   +  L
Sbjct: 129 DTVIGERG----VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL 184

Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
            +   T V + H +      ADR+V ++ G+IVE+ + EE
Sbjct: 185 MKNRTTFV-IAHRLSTIEN-ADRIVVLEDGKIVERGTHEE 222