RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780173|ref|YP_003064586.1| ABC transporter related
protein [Candidatus Liberibacter asiaticus str. psy62]
(257 letters)
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 300 bits (770), Expect = 2e-82
Identities = 120/238 (50%), Positives = 171/238 (71%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+E K ++K +G L +I+LN+ +GE V+I GPSGSGKSTL+RCIN +E+ +G++I++
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
G+ +ND + +R++ GMVFQ F LF +L+ LEN GP+ VR K++AE+ A L
Sbjct: 62 GLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELL 121
Query: 138 NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE 197
KV +A+++H S LSGG+ QR AIAR+L ++PK+MLFDEPTSALDPE+ EVL +M +
Sbjct: 122 AKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181
Query: 198 LAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQI 255
LAEEGMTMV VTHE+GFA +VA R++F+D+G+I E P+ NP +R Q FL +
Sbjct: 182 LAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQHV 239
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 268 bits (687), Expect = 9e-73
Identities = 122/246 (49%), Positives = 163/246 (66%), Gaps = 6/246 (2%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG---- 72
A+E+K L K + L I+L V GE V I GPSGSGK+TL+RCIN +E+ +AG
Sbjct: 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62
Query: 73 -EIIING-IPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAE 130
+I I+ L+ I ++R+ VG VFQ+FNLF + +VLEN GP+ V+ PK++A
Sbjct: 63 GDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT 122
Query: 131 ELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE 190
A L KV +A K LSGG+ QR AIAR+L M+P+++LFDEPTSALDPE+V E
Sbjct: 123 ARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182
Query: 191 VLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQA 250
VL+ + +LA+E TMV VTHEM FAR VADR +FMDQG+IVEQ + F +PQ RT+
Sbjct: 183 VLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQ 242
Query: 251 FLSQII 256
FL + +
Sbjct: 243 FLEKFL 248
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 267 bits (683), Expect = 3e-72
Identities = 117/251 (46%), Positives = 165/251 (65%), Gaps = 12/251 (4%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII- 76
V + K +G L +N +V GE+V + GPSGSGKST++R + +E G+I +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 77 ----------NGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPK 126
NG + D +++ ++R +GMVFQ FNLF + +VL+N T P+ V M +
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 127 KDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE 186
+AE+ AM L+ V +ADK+ + LSGG+ QR AIAR+L M+PK+MLFDE TSALDPE
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 187 MVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH 245
+V EVL+++ LA E +TM+ VTHEMGFAR+ ADRV F D+G+IVEQ P+E F P+
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKE 240
Query: 246 ERTQAFLSQII 256
ERT+ FLS++I
Sbjct: 241 ERTREFLSKVI 251
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 246 bits (630), Expect = 5e-66
Identities = 92/246 (37%), Positives = 148/246 (60%), Gaps = 11/246 (4%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQA 71
A+EI+ LN +YG AL++INL++ + + + GPSG GKSTL+R +N +
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 72 GEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEE 131
G+++ +G + D ++ E+RR VGMVFQ N F +S+ +N GP KK+ +E
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDE 119
Query: 132 LAMHYLNKVKI----ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEM 187
+ L K + D+ H S+ LSGG+ QR IAR+L ++P+++L DEPTSALDP
Sbjct: 120 IVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
Query: 188 VKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
++ +++ EL ++ T+V VTH M A +++DR F G++VE E+ F NP+ +R
Sbjct: 180 TGKIEELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKR 238
Query: 248 TQAFLS 253
T+ ++S
Sbjct: 239 TEDYIS 244
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 241 bits (617), Expect = 1e-64
Identities = 100/241 (41%), Positives = 153/241 (63%), Gaps = 5/241 (2%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
++++ +N +YG AL DI L+ +GE +++ GPSG+GKS+L+R +N +E ++G + I
Sbjct: 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 77 NGIPLN----DDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
G + + I E+RR+VGMVFQ +NL+ +L+V +N P V + K A
Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR 121
Query: 133 AMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVL 192
A L ++++ + R LSGG+ QR AIAR+L M+P+++LFDEPT+ALDPE+ +++
Sbjct: 122 AEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV 181
Query: 193 DIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
I+ ELAE G+T V VTHE+ AR+ A RVV+M+ G IVEQ F PQ E + +L
Sbjct: 182 SIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQPQTEAFKNYL 240
Query: 253 S 253
S
Sbjct: 241 S 241
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 234 bits (598), Expect = 2e-62
Identities = 118/243 (48%), Positives = 160/243 (65%), Gaps = 12/243 (4%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
L+K YG L+ ++L G+ + I G SGSGKST +RCIN +EK G I++NG +N
Sbjct: 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70
Query: 83 -----------DDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEE 131
D + +R + MVFQHFNL+S+++VLEN PI V + K++A E
Sbjct: 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE 130
Query: 132 LAMHYLNKVKIADKSH-RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE 190
A+ YL KV I +++ + LSGG+ QR +IAR+L M+P+++LFDEPTSALDPE+V E
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 191 VLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQA 250
VL IM +LAEEG TMV VTHEMGFAR V+ V+F+ QG+I E+ +PE+ F NPQ R Q
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQ 250
Query: 251 FLS 253
FL
Sbjct: 251 FLK 253
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 228 bits (583), Expect = 1e-60
Identities = 96/252 (38%), Positives = 157/252 (62%), Gaps = 21/252 (8%)
Query: 18 VEIKFLNKWY----GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGE 73
+E+K ++K + HAL +++L++ GE + G SG+GKSTLIRCIN +E+ +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 74 IIINGIPL----NDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKD- 128
++++G L ++R + RR +GM+FQHFNL S+ +V +N L P+ + PK +
Sbjct: 62 VLVDGQDLTALSEKELR---KARRQIGMIFQHFNLLSSRTVFDNVAL-PLELAGTPKAEI 117
Query: 129 ---AEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
EL L V ++DK+ R + LSGG+ QR AIAR+L PK++L DE TSALDP
Sbjct: 118 KARVTEL----LELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 186 EMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
+ +L+++ ++ E G+T+V +THEM +++ DRV +D G++VEQ + E F++P+
Sbjct: 174 ATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233
Query: 245 HERTQAFLSQII 256
H T+ F+ +
Sbjct: 234 HPLTREFIQSTL 245
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 197 bits (503), Expect = 2e-51
Identities = 93/237 (39%), Positives = 149/237 (62%), Gaps = 20/237 (8%)
Query: 18 VEIKFLNKWYGNFH-ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
+E++ L+K Y N AL++INLN+ GE V I GPSG+GKSTL+RCIN + + +G I++
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 77 NGIPLNDDIRN-----IHEVRRDVGMVFQHFNLFSNLSVLENCTLG--------PIWVRK 123
G DI + ++RR +GM+FQH+NL L+VLEN G + +
Sbjct: 62 EG----TDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGR 117
Query: 124 MPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSAL 183
++D +E A+ L +V +ADK+++ + LSGG+ QR AIAR+L QP ++L DEP ++L
Sbjct: 118 FSEED-KERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASL 176
Query: 184 DPEMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEF 239
DP+ K+V+D + + +E G+T++ H++ A++ ADR+V + G+IV +P E
Sbjct: 177 DPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 178 bits (453), Expect = 1e-45
Identities = 93/239 (38%), Positives = 145/239 (60%), Gaps = 6/239 (2%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+EI ++K +G+F AL D+NL V G V + GPSGSGKSTL+R I +E+ +G I +N
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
G D +H R +G VFQH+ LF +L+V +N G + +RK PK + L
Sbjct: 61 G----QDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFG-LEIRKHPKAKIKARVEELL 115
Query: 138 NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE 197
V++ R + LSGG+ QR A+AR+L ++P+++L DEP ALD ++ KE+ + +
Sbjct: 116 ELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRK 175
Query: 198 LAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQI 255
L +E +T V VTH+ A +VADR+V M G+I + SP+E +++P + +FL ++
Sbjct: 176 LHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEV 234
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 177 bits (451), Expect = 2e-45
Identities = 86/244 (35%), Positives = 142/244 (58%), Gaps = 13/244 (5%)
Query: 18 VEIKFLNKWY----GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGE 73
+++ + K + AL +++L+V G+ + G SG+GKSTLIRC+N +E+ +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 74 IIINGIPL----NDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA 129
+I++G L N ++ RR +GM+FQHFNL S+ +V N L P+ + PK +
Sbjct: 62 VIVDGQDLTTLSNSEL--TKA-RRQIGMIFQHFNLLSSRTVFGNVAL-PLELDNTPKDEI 117
Query: 130 EELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVK 189
+ L V + DK S LSGG+ QR AIAR+L PK++L DE TSALDP +
Sbjct: 118 KRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177
Query: 190 EVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248
+L+++ E+ G+T++ +THEM +++ D V + G+++EQ + E F++P+
Sbjct: 178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLA 237
Query: 249 QAFL 252
Q F+
Sbjct: 238 QKFI 241
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 174 bits (444), Expect = 2e-44
Identities = 91/268 (33%), Positives = 145/268 (54%), Gaps = 23/268 (8%)
Query: 1 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
M ++ N A+E++ LN +YG+ AL DI++ + + GPSG GKSTL+
Sbjct: 9 MALPLLDVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLL 68
Query: 61 RCIN---------HIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVL 111
RC N IE GEI ++G + D ++ E+RR VGMVFQ N F S+
Sbjct: 69 RCFNRMNDLVDNCRIE----GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIY 123
Query: 112 ENCTLGPIWVRKMPKKDAEELAMHYL------NKVKIADKSHRSSSLLSGGESQRAAIAR 165
EN G ++ +E L ++VK D+ H ++ LSGG+ QR IAR
Sbjct: 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK--DRLHENAFGLSGGQQQRLVIAR 181
Query: 166 SLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFM 225
++ ++P+++L DEPTSALDP ++ +++ EL + T+V VTH M A +V+D FM
Sbjct: 182 AIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK-YTIVIVTHNMQQAARVSDYTAFM 240
Query: 226 DQGQIVEQNSPEEFFNNPQHERTQAFLS 253
G++VE + F +P ++T+ +++
Sbjct: 241 YMGKLVEYGDTDTLFTSPAKKQTEDYIT 268
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 173 bits (440), Expect = 5e-44
Identities = 88/227 (38%), Positives = 129/227 (56%), Gaps = 8/227 (3%)
Query: 19 EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
I + K +G F AL+DI+L+V +GE V + GPSG GK+TL+R I +E+ AG I G
Sbjct: 6 SIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG 65
Query: 79 IPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLN 138
DI + +RD G+VFQ + LF NL+V +N G + R M + + E L+
Sbjct: 66 ----RDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYG-LKNRGMGRAEVAERVAELLD 120
Query: 139 KVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMI-E 197
V + + LSGG+ QR A+AR+L P ++L DEP SALD V+E L I +
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR-VREHLRTEIRQ 179
Query: 198 LAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
L G+T + VTH+ A +ADR+V M+ G I + +P+E + +P
Sbjct: 180 LQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 172 bits (437), Expect = 1e-43
Identities = 84/210 (40%), Positives = 128/210 (60%), Gaps = 8/210 (3%)
Query: 20 IKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING- 78
+K ++K +G+ L D+NL + +G+ I G SGSGKSTL+ I +EK +G++ +NG
Sbjct: 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60
Query: 79 --IPLNDDIRNIHEVRRD-VGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMH 135
PLN + + RR+ +G +FQ+F L N +V EN LG + + KK+ E
Sbjct: 61 ETPPLNS--KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKL-SKKEKREKKKE 117
Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
L KV + K + LSGGE QR A+AR++ P ++L DEPT +LDP+ EVLD++
Sbjct: 118 ALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFM 225
+EL +EG T++ VTH+ A+Q ADRV+ +
Sbjct: 178 LELNDEGKTIIIVTHDPEVAKQ-ADRVIEL 206
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 171 bits (435), Expect = 2e-43
Identities = 85/249 (34%), Positives = 144/249 (57%), Gaps = 19/249 (7%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCIN---------HIEK 68
+ +K L+ +YG+F AL+ INL++ + + GPSG GKST +R +N IE
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE- 62
Query: 69 HQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKD 128
GE++++G + +++++R+ VGMVFQ N F +S+ +N GP KK
Sbjct: 63 ---GEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKK 118
Query: 129 AEELAMHYLNKVKI----ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALD 184
+E+ L + D+ +S+ LSGG+ QR IAR+L ++P+++L DEPTSALD
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
Query: 185 PEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
P ++ +++ EL ++ T+V VTH M A +++D+ F G+IVE + F NP+
Sbjct: 179 PISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPK 237
Query: 245 HERTQAFLS 253
+RT+ +++
Sbjct: 238 DKRTEDYIT 246
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 169 bits (429), Expect = 9e-43
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 10/244 (4%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
++EI + K +G L DI+L++ G+ V + GPSGSGK+TL+R I +E +G I
Sbjct: 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61
Query: 77 NGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWV---RKMPKKDA-EEL 132
+G D+ +H R VG VFQH+ LF +++V +N G + V R+ P A +
Sbjct: 62 HG----TDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFG-LTVLPRRERPNAAAIKAK 116
Query: 133 AMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVL 192
L V++A + R + LSGG+ QR A+AR+L ++P+I+L DEP ALD ++ KE+
Sbjct: 117 VTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176
Query: 193 DIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAF 251
+ +L EE T V VTH+ A +VADRVV M QG I + +P++ + P F
Sbjct: 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEF 236
Query: 252 LSQI 255
+ ++
Sbjct: 237 MGEV 240
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 168 bits (428), Expect = 1e-42
Identities = 85/258 (32%), Positives = 142/258 (55%), Gaps = 15/258 (5%)
Query: 1 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
+ + P K ++++ LN +YG FHAL++INL++ + + GPSG GKSTL+
Sbjct: 1 AAMMSMVATAPSK----IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLL 56
Query: 61 RCINHI-----EKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCT 115
R N + E+ GEI+++G + ++I +R VGMVFQ F +S+ +N
Sbjct: 57 RTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIA 115
Query: 116 LGPIWVRKMPKKDAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQP 171
G K+ + + +E L K ++ DK H+S LSGG+ QR IAR + ++P
Sbjct: 116 FGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRP 175
Query: 172 KIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIV 231
+++L DEP SALDP + +++ EL ++ T+V VTH M A + +D FM G+++
Sbjct: 176 EVLLLDEPCSALDPISTGRIEELITELKQD-YTVVIVTHNMQQAARCSDYTAFMYLGELI 234
Query: 232 EQNSPEEFFNNPQHERTQ 249
E + + F P ++T+
Sbjct: 235 EFGNTDTIFTKPAKKQTE 252
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 166 bits (421), Expect = 6e-42
Identities = 92/249 (36%), Positives = 140/249 (56%), Gaps = 12/249 (4%)
Query: 14 NNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKH---- 69
+ +K LN WYG+ L DINL++ + E GPSG GKST +RC N +
Sbjct: 2 SEIHASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNC 61
Query: 70 -QAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP-IWVRKMPKK 127
GE+ I+GI + N+ +R VGMVFQ N F S+ +N GP + KK
Sbjct: 62 KVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKK 120
Query: 128 DAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSAL 183
+E+ L V ++ D+ S+ LSGG+ QR IAR++ ++P ++L DEP SAL
Sbjct: 121 KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 184 DPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
DP + V++ +I+ ++ T++ VTH M A++V+DRV F G+IVE N+ +E F NP
Sbjct: 181 DP-VATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239
Query: 244 QHERTQAFL 252
Q +T+ ++
Sbjct: 240 QSSKTKRYI 248
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 165 bits (420), Expect = 9e-42
Identities = 71/203 (34%), Positives = 119/203 (58%), Gaps = 2/203 (0%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLND-DIR 86
G AL D++L++ +GE + + GPSG+GK+TL++ + G++ I G +N R
Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72
Query: 87 NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS 146
+ +RR +G+VFQ F L + +V EN L P+ VR +++ + L +V + K+
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVAL-PLEVRGKKEREIQRRVGAALRQVGLEHKA 131
Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMV 206
LSGGE QR AIAR++ P ++L DEPT LDP++ + +LD++ L + G T++
Sbjct: 132 DAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVI 191
Query: 207 CVTHEMGFARQVADRVVFMDQGQ 229
TH++ +VA RV+ +D G+
Sbjct: 192 VATHDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 164 bits (417), Expect = 2e-41
Identities = 89/244 (36%), Positives = 140/244 (57%), Gaps = 11/244 (4%)
Query: 19 EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQAGE 73
+I +N WYG HAL++INL++ E I GPSG GKST I+ +N + + GE
Sbjct: 14 QINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGE 73
Query: 74 IIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELA 133
+ NG + ++ E+R+++GMVFQ N F S+ +N GP KK +E+
Sbjct: 74 MNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIV 132
Query: 134 MHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVK 189
L V ++ D+ H + LSGG+ QR IAR+L P ++L DEPTSALDP +
Sbjct: 133 EKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTR 192
Query: 190 EVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQ 249
++ +++++L E+ T+V VTH M A +V+D+ F G++VE N + F+NP +RT
Sbjct: 193 KIEELILKLKEK-YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQRTL 251
Query: 250 AFLS 253
+++
Sbjct: 252 DYIT 255
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 163 bits (415), Expect = 3e-41
Identities = 92/248 (37%), Positives = 141/248 (56%), Gaps = 11/248 (4%)
Query: 15 NFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----H 69
+E K LN WYG AL DINL + + + GPSG GKST +RC+N +
Sbjct: 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 70 QAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA 129
GE++++G + D ++ E+R+ VGMVFQ N F +S+ +N GP KK+
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKEL 120
Query: 130 EELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
+++ L K ++ D +S+ LSGG+ QR IAR++ ++P ++L DEPTSALDP
Sbjct: 121 DKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH 245
++ D+M+EL +E T+V VTH M A +V+D F G ++E N E+ F PQ
Sbjct: 181 ISTLKIEDLMVELKKE-YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQK 239
Query: 246 ERTQAFLS 253
+ T+ ++S
Sbjct: 240 KETEDYIS 247
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 163 bits (415), Expect = 4e-41
Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 11/223 (4%)
Query: 17 AVEIKFLNKWYGN----FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG 72
+ I+ LN +YG+ L DINL + GE VI+ GPSGSGK+TL+ I + Q G
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60
Query: 73 EIIINGIPLND-DIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEE 131
+ + G L + + ++RR++G +FQ NL L+ +N + + ++A E
Sbjct: 61 SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE 120
Query: 132 LAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEV 191
A L V + D LSGG+ QR AIAR+L +PK++L DEPT+ALD + ++V
Sbjct: 121 RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 192 LDIMIELA-EEGMTMVCVTHEMGFAR--QVADRVVFMDQGQIV 231
+++M +LA E+G T++ VTH+ R VADR+V M+ G+++
Sbjct: 181 VELMQKLAREQGCTILIVTHD---NRILDVADRIVHMEDGKLL 220
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 163 bits (414), Expect = 5e-41
Identities = 87/250 (34%), Positives = 144/250 (57%), Gaps = 13/250 (5%)
Query: 15 NFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHI-----EKH 69
FA+E L +YG+ H ++ ++L + + + GPSG GKSTL+R N + E
Sbjct: 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 70 QAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKM--PKK 127
GE+ + G + + EVRR+VGMVFQ+ N F +L++ +N +G + + + KK
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIG-VKLNGLVKSKK 120
Query: 128 DAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSAL 183
+ +E L K ++ D+ + S LSGG+ QR IAR+L M+PKI+L DEPT+ +
Sbjct: 121 ELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 184 DPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
DP ++ +++ EL +E T+V VTH A +V+D V F+ G+++E + F NP
Sbjct: 181 DPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239
Query: 244 QHERTQAFLS 253
+HE T+ +++
Sbjct: 240 EHELTEKYVT 249
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 162 bits (412), Expect = 7e-41
Identities = 85/235 (36%), Positives = 136/235 (57%), Gaps = 12/235 (5%)
Query: 25 KWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDD 84
K G + D +L + +GE +I G SGSGKST +R +N + + AG+I I+G ++
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG----EN 56
Query: 85 IRNIHEV------RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLN 138
I V R+ +GMVFQ F LF ++++L+N +LGP + P+++ +E A+ L
Sbjct: 57 IMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGP-ELLGWPEQERKEKALELLK 115
Query: 139 KVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
V + + HR LSGG QR +AR+L +P I+L DE SALDP + + D + +L
Sbjct: 116 LVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175
Query: 199 -AEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
A T+V +TH++ A ++ DR+V M G+IV+ +P+E NP +E + F+
Sbjct: 176 QATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 162 bits (412), Expect = 8e-41
Identities = 88/263 (33%), Positives = 137/263 (52%), Gaps = 12/263 (4%)
Query: 1 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
M + K + + ++ +YG AL D++L++ GPSG GKST +
Sbjct: 3 MADEKAADKKATATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFL 62
Query: 61 RCINH----IEKHQ-AGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCT 115
RC+N I+ + G+I ++G + D ++ E+R VGMVFQ N F S+ EN
Sbjct: 63 RCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVA 121
Query: 116 LGP-IWVRKMPKKDAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQ 170
GP I K + +E+ L K ++ D+ H + LSGG+ QR IAR++ +
Sbjct: 122 YGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVS 181
Query: 171 PKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
P+++L DEP SALDP +V +++ EL + T+V VTH M A +V+ R F G +
Sbjct: 182 PEVILMDEPCSALDPIATAKVEELIDELRQN-YTIVIVTHSMQQAARVSQRTAFFHLGNL 240
Query: 231 VEQNSPEEFFNNPQHERTQAFLS 253
VE E+ F NP RTQ +++
Sbjct: 241 VEVGDTEKMFTNPDDPRTQDYIT 263
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 160 bits (407), Expect = 3e-40
Identities = 90/253 (35%), Positives = 141/253 (55%), Gaps = 20/253 (7%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQAG 72
+++K LN +YG+FHA+ D+NLN+ GPSG GKST++R +N + + G
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
E++++G L + VRR +GMVFQ N F +S+ +N G KKD +EL
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL 124
Query: 133 AMHYL------NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE 186
L N+VK D+ + LSGG+ QR IAR++ ++P ++L DEP SALDP
Sbjct: 125 VEKSLRGANLWNEVK--DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPI 182
Query: 187 MVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFM------DQGQIVEQNSPEEFF 240
+ D++ EL ++ T+V VTH M A +V+D+ F G++VE + E+ F
Sbjct: 183 STLAIEDLINELKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241
Query: 241 NNPQHERTQAFLS 253
+NP + T+ ++S
Sbjct: 242 SNPTQKATEDYIS 254
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 160 bits (406), Expect = 4e-40
Identities = 89/253 (35%), Positives = 141/253 (55%), Gaps = 30/253 (11%)
Query: 19 EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
I+ L+ +YG AL+ INL + + + GPSG GKSTL+RC+N + G I
Sbjct: 5 NIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGK 64
Query: 79 IPL-NDDIR---NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
+ + +DI ++ ++R VGMVFQ N F +S+ EN G +R KD + L
Sbjct: 65 LTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG---LRAQGIKDKKVLD- 119
Query: 135 HYLNKVKIADKSHRSSSL--------------LSGGESQRAAIARSLCMQPKIMLFDEPT 180
++ ++S R ++L LSGG+ QR IAR++ M+P ++L DEPT
Sbjct: 120 ------EVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173
Query: 181 SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
SALDP ++ ++M EL + T+V VTH M AR+++DR F G++VE + + F
Sbjct: 174 SALDPIATHKIEELMEELKKN-YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
Query: 241 NNPQHERTQAFLS 253
+NP+ +RTQ +++
Sbjct: 233 SNPKDDRTQGYVN 245
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 159 bits (405), Expect = 4e-40
Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 11/245 (4%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQAG 72
+ K LN WYG HAL DI +++ + + GPSG GKSTL+RC N + G
Sbjct: 7 LSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITG 66
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
+I+ NG + D ++ +RR +GMVFQ N F S+ EN GP + KK + +
Sbjct: 67 DILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTI 125
Query: 133 AMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMV 188
L ++ D+ H S+ LSGG+ QR IAR+L + P+++L DEP SALDP
Sbjct: 126 VEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 189 KEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248
++ D++ +L +E T++ VTH M A +V+D FM G+++E + + F NP E T
Sbjct: 186 AKIEDLIEDLKKE-YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELT 244
Query: 249 QAFLS 253
+ +++
Sbjct: 245 ENYIT 249
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 159 bits (405), Expect = 5e-40
Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 21/264 (7%)
Query: 4 TPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCI 63
+ P+ A+ K L+ +YG A++ I++ + + + GPSGSGKST +R +
Sbjct: 7 NERHIITFPEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL 66
Query: 64 NHIEKHQA-----GEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP 118
N + G+I+ GI +N N++E+R+ +GMVFQ N F+ S+ EN T
Sbjct: 67 NRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAK-SIYENITFA- 124
Query: 119 IWVRKMPKKDAEEL---------AMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCM 169
+ + KD + L ++VK D H+S+ LSGG+ QR IAR++ +
Sbjct: 125 --LERAGVKDKKVLDEIVETSLKQAALWDQVK--DDLHKSALTLSGGQQQRLCIARAIAV 180
Query: 170 QPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQ 229
+P I+L DEP SALDP ++ + M EL + T++ VTH M A + +D F G
Sbjct: 181 KPDILLMDEPASALDPISTMQLEETMFELKKN-YTIIIVTHNMQQAARASDYTAFFYLGD 239
Query: 230 IVEQNSPEEFFNNPQHERTQAFLS 253
++E + F NP+ + T ++S
Sbjct: 240 LIEYDKTRNIFTNPKLQSTNDYVS 263
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 159 bits (404), Expect = 7e-40
Identities = 89/241 (36%), Positives = 144/241 (59%), Gaps = 18/241 (7%)
Query: 19 EIKFLNKWYGNF--HALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
EI+F Y +F L+DI++ G I GPSG+GKSTLI+ IN + G I+I
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 77 NGIPLNDDIRNIH--EVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
+G+ DI+ I ++RR +GMVFQ +LF +V +N GP M K +
Sbjct: 63 DGV----DIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGP-----MLKGEKNVDVE 112
Query: 135 HYLNKVKIADKSHRSSSL--LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVL 192
+YL+ V + +K + + + LSGGE+QR +IAR+L P+++L DEPTSALDP + +
Sbjct: 113 YYLSIVGL-NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 193 DIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAF 251
+++++L + +T++ +TH M A+++ D F+++G +VE +FF NPQ+E T+ F
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231
Query: 252 L 252
+
Sbjct: 232 I 232
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 159 bits (403), Expect = 8e-40
Identities = 88/263 (33%), Positives = 141/263 (53%), Gaps = 13/263 (4%)
Query: 2 KNTPINSKNPPKNNFAV--EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTL 59
N + V + + LN WYG HAL++INL++ E I GPSG GKST
Sbjct: 7 NVQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTY 66
Query: 60 IRCINHIEK-----HQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENC 114
I+ +N + + G+I+ + D ++ E+R +VGMVFQ N F S+ +N
Sbjct: 67 IKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNV 125
Query: 115 TLGPIWVRKMPKKDAEELAMHYLNKVKI----ADKSHRSSSLLSGGESQRAAIARSLCMQ 170
T GP KK +E+ L I D+ H ++ LSGG+ QR IAR L ++
Sbjct: 126 TYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIE 185
Query: 171 PKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
P ++L DEPTSALDP +V +++ EL ++ +++ VTH M A +++D+ F G +
Sbjct: 186 PDVILMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTHNMQQAARISDKTAFFLNGYV 244
Query: 231 VEQNSPEEFFNNPQHERTQAFLS 253
E + ++ F+NP +RT+ +++
Sbjct: 245 NEYDDTDKIFSNPSDKRTEDYIT 267
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 158 bits (400), Expect = 2e-39
Identities = 87/249 (34%), Positives = 137/249 (55%), Gaps = 22/249 (8%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINH----IEKHQA-GEIIIN 77
LN +YG+F A++++ L++ + + GPSG GKST++RC N I + G++ +
Sbjct: 16 LNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFH 75
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
G L + EVRR +GMVFQ N F S+ +N G + K D +EL L
Sbjct: 76 GKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGA-RINGY-KGDMDELVERSL 132
Query: 138 NKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193
+ ++ DK +S LSGG+ QR IAR++ +QP+++L DEP SALDP + +
Sbjct: 133 RQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE 192
Query: 194 IMIELAEEGMTMVCVTHEMGFARQVADRVVFMD---------QGQIVEQNSPEEFFNNPQ 244
+M EL E+ T++ VTH M A +V+D F + G +VE + E+ FN+PQ
Sbjct: 193 LMHELKEQ-YTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQ 251
Query: 245 HERTQAFLS 253
+ T+ ++S
Sbjct: 252 QQATRDYVS 260
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 156 bits (396), Expect = 5e-39
Identities = 74/215 (34%), Positives = 121/215 (56%), Gaps = 6/215 (2%)
Query: 25 KWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDD 84
K YG+F A+ +N V GE GP+G+GK+T IR + + + +G + G D
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGY---DV 57
Query: 85 IRNIHEVRRDVGMVFQHFNLFSNLSVLENCTL-GPIWVRKMPKKDAEELAMHYLNKVKIA 143
+R +VRR +G+V Q+ ++ +L+ EN + G ++ +PK +AEE A L ++
Sbjct: 58 VREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY--GLPKDEAEERAEELLELFELG 115
Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGM 203
+ + R SGG +R IA SL QP ++ DEPT+ LDP + + D + L EEG+
Sbjct: 116 EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 204 TMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
T++ TH M A ++ DR+ +D G+I+ + +PEE
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEE 210
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 155 bits (394), Expect = 1e-38
Identities = 77/227 (33%), Positives = 137/227 (60%), Gaps = 6/227 (2%)
Query: 18 VEIKFLNKWYGN-FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
++++ LN Y + HAL+ IN+N+ +GE I G +G+GKSTL + +N I K +G I+
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 77 NGIPLNDDIRNIHEVRRDVGMVFQH--FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
+G P++ + + ++R VGMVFQ LFS SV ++ + G + + K+P+ + +
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS-ASVYQDVSFGAVNL-KLPEDEVRKRVD 123
Query: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
+ L + I + + LS G+ +R AIA L M+PK+++ DEPT+ LDP V E++ +
Sbjct: 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL 183
Query: 195 MIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
++E+ +E G+T++ TH++ D V M +G+++ Q +P+E F
Sbjct: 184 LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 155 bits (393), Expect = 1e-38
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 17/248 (6%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIE-----KHQAG 72
+E + L+ +YG+F AL DI+L + + + GPSG GKST +RC+N + G
Sbjct: 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG 66
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
EI+++G + D ++ E+RR VGMVFQ N F S+ EN G +R KD L
Sbjct: 67 EILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG---LRVNGVKDKAYL 122
Query: 133 AMHYLNKVKIA-------DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
A ++ A D+ H S+ LSGG+ QR IAR+L ++P+++L DEP SALDP
Sbjct: 123 AERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH 245
+++ +++ EL T++ VTH M A +V+D F G+++E E+ F P+
Sbjct: 183 IATQKIEELIHELKAR-YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPRE 241
Query: 246 ERTQAFLS 253
++T+ +++
Sbjct: 242 KQTEDYIT 249
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 154 bits (390), Expect = 2e-38
Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 11/251 (4%)
Query: 12 PKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK--- 68
PKN +E + LN +Y +F AL +IN+ +L+ + GPSG GKST +R +N +
Sbjct: 2 PKNEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVE 61
Query: 69 --HQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPK 126
G +I G + + +I E+RR +GMVFQ N F +S+ +N + GP K
Sbjct: 62 GIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDK 120
Query: 127 KDAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSA 182
K +E+ L K ++ DK + ++ LSGG+ QR IAR+L ++P ++L DEPTSA
Sbjct: 121 KKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA 180
Query: 183 LDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
LDP ++ +++I L +E T++ VTH M A +++DR F G I E++S +E F N
Sbjct: 181 LDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
Query: 243 PQHERTQAFLS 253
P++ +T+ ++S
Sbjct: 240 PKNTKTEEYIS 250
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 154 bits (390), Expect = 2e-38
Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 17/252 (6%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHI-----EKHQAG 72
+EI+ L +G L +NL + + GPSGSGKSTL+R N + E +G
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63
Query: 73 EIIINGIPLNDDI--RNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKM-PKKDA 129
E+ ++G DI ++ E+RR V MVFQ N NLS+ EN LG R + KK+
Sbjct: 64 EVYLDG----QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119
Query: 130 EELAMHYLNKVK----IADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
+E L K + + D+ + LSGG+ QR IAR+L QP+++L DEPT+ LDP
Sbjct: 120 QERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH 245
E ++ + +EL ++ MT+V VTH A +++D V F+ +GQIVE E F NP+H
Sbjct: 180 ENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRH 238
Query: 246 ERTQAFLSQIIY 257
E T+ +++ +Y
Sbjct: 239 ELTEKYVTGRLY 250
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 154 bits (391), Expect = 3e-38
Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 12/230 (5%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
VE++ ++K + + +++L + GE + + GPSG GK+T++R I E +G I+++
Sbjct: 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD 74
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
G DI ++ R V VFQ + LF +++V EN G + ++K P + M L
Sbjct: 75 G----QDITHVPAENRHVNTVFQSYALFPHMTVFENVAFG-LRMQKTPAAEITPRVMEAL 129
Query: 138 NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE 197
V++ + + R LSGG+ QR AIAR++ +PK++L DE SALD ++ K+ + E
Sbjct: 130 RMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQ---MQNE 186
Query: 198 LA----EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
L + G+T V VTH+ A ++DR+V M G+I + +P E + P
Sbjct: 187 LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 154 bits (390), Expect = 3e-38
Identities = 73/200 (36%), Positives = 114/200 (57%), Gaps = 2/200 (1%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLND-DIRNIHE 90
AL ++N ++ +GE V + G SG+GKST ++ I IEK G+I NG L R I
Sbjct: 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77
Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150
+RR +GMVFQ L S+ +V +N P+ + +P +DA E L KV + K+H
Sbjct: 78 LRRHIGMVFQDHRLLSDRTVYDNVAF-PLRIIGVPPRDANERVSAALEKVGLEGKAHALP 136
Query: 151 SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTH 210
LSGGE QR AIAR++ +P ++L DEPT LDPE+ ++++ + E G T++ TH
Sbjct: 137 MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATH 196
Query: 211 EMGFARQVADRVVFMDQGQI 230
++ R + + +G++
Sbjct: 197 DINLVETYRHRTLTLSRGRL 216
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 153 bits (388), Expect = 4e-38
Identities = 86/262 (32%), Positives = 144/262 (54%), Gaps = 11/262 (4%)
Query: 1 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
++ + P +E+K L+ +YG A+ DI++++ + + GPSG GKST +
Sbjct: 5 VREKIEIAPFPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFL 64
Query: 61 RCINHIEK-----HQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCT 115
R IN + GEI+ G+ + D N+ +RR++GMVFQ N F S+ N T
Sbjct: 65 RSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNIT 123
Query: 116 LGPIWVRKMPKKDAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQP 171
+ + K +E+ L K ++ D+ H S+ LSGG+ QR IAR+L M+P
Sbjct: 124 HALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP 183
Query: 172 KIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIV 231
++L DEP SALDP ++ +++ EL EE +++ VTH M A +V+DR F G +V
Sbjct: 184 AVLLLDEPASALDPISNAKIEELITELKEE-YSIIIVTHNMQQALRVSDRTAFFLNGDLV 242
Query: 232 EQNSPEEFFNNPQHERTQAFLS 253
E + E+ F +P+ ++T+ +++
Sbjct: 243 EYDQTEQIFTSPKQQKTEDYIN 264
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 151 bits (383), Expect = 2e-37
Identities = 77/215 (35%), Positives = 133/215 (61%), Gaps = 4/215 (1%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL+ IN +GE V + GP+G+GKSTL N I K +GE++I G P+ D +++ EV
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 92 RRDVGMVFQHFN--LFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRS 149
R+ VG+VFQ+ + LF+ +V E+ GP+ + + K++ E+ L V + ++
Sbjct: 77 RKTVGIVFQNPDDQLFAP-TVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKP 134
Query: 150 SSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVT 209
LSGG+ +R AIA L M+P+I++ DEPTS LDP +++ ++ +L +EG+T++ T
Sbjct: 135 PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIIST 194
Query: 210 HEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
H++ AD+V M G+I+++ +P+E F++ +
Sbjct: 195 HDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIE 229
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 150 bits (381), Expect = 2e-37
Identities = 89/252 (35%), Positives = 141/252 (55%), Gaps = 34/252 (13%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
+N +YG+ A++++NL+V RG + GPSG GK+T +R IN + G + I L
Sbjct: 10 VNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL- 68
Query: 83 DDIRNIHE-------VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMH 135
D ++I+ +RR VGMVFQ N F +SV +N G ++ +D + L
Sbjct: 69 -DGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAG---LKLAGIRDRDHL--- 121
Query: 136 YLNKVKIADKSHRSSSL--------------LSGGESQRAAIARSLCMQPKIMLFDEPTS 181
+++A++S R ++L LSGG+ QR IAR+L ++P+I+L DEPTS
Sbjct: 122 ----MEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTS 177
Query: 182 ALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
ALDP + D+M +L ++ T++ VTH M A +V+D F G +VE ++ F
Sbjct: 178 ALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
Query: 242 NPQHERTQAFLS 253
NP+ ERT+A++S
Sbjct: 237 NPRDERTEAYVS 248
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 150 bits (381), Expect = 3e-37
Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 17/248 (6%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHI-----EKHQAG 72
+++ L+ +Y AL ++L+ E + GPSGSGKSTL+R IN + E G
Sbjct: 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITG 65
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
I+ NG + + ++R+++GMVFQ N F +S+ EN G +R KD + L
Sbjct: 66 SIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG---LRLKGIKDKQVL 121
Query: 133 AMHYLNKVKIA-------DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
+K A D+ H S+ LSGG+ QR IAR L PKI+L DEPTSALDP
Sbjct: 122 DEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDP 181
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH 245
++ + ++ L ++ TM+ VT M A +++DR F G ++E N ++ F NP+H
Sbjct: 182 ISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKH 240
Query: 246 ERTQAFLS 253
+ T+ ++S
Sbjct: 241 KETEDYIS 248
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 150 bits (380), Expect = 3e-37
Identities = 88/248 (35%), Positives = 136/248 (54%), Gaps = 17/248 (6%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHI-----EKHQAG 72
++ + +N WYG+FHAL+ I++ + V GPSG GKST +R N + G
Sbjct: 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
EI I+G + D + E+R++VGMVFQ N F S+ EN G +R KD +
Sbjct: 64 EIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG---LRVNGVKDNAFI 119
Query: 133 AMHYLNKVK-------IADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
+K + DK S+ LSGG+ QR IAR++ + P ++L DEP SALDP
Sbjct: 120 RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH 245
+V +++ EL ++ T+V VTH M A +V+D+ F G++VE + ++ F NP+
Sbjct: 180 ISTAKVEELIHELKKD-YTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEK 238
Query: 246 ERTQAFLS 253
E TQ +++
Sbjct: 239 EATQNYIT 246
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 150 bits (380), Expect = 4e-37
Identities = 86/263 (32%), Positives = 143/263 (54%), Gaps = 16/263 (6%)
Query: 3 NTPINSKNP--PKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
+T S +P +E + LN +YG+ AL D+++++ + + GPSG GKST +
Sbjct: 23 DTTDPSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFL 82
Query: 61 RCINHIEK-----HQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCT 115
RCIN + GE+ G + D + +RR +GMVFQ N F S+ +N
Sbjct: 83 RCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVA 141
Query: 116 LGPIWVRKMPKKDAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQP 171
G + ++ D +E L + ++ D+ S LSGG+ QR IAR++ P
Sbjct: 142 YG-LKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDP 199
Query: 172 KIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRV-VFMDQGQI 230
+++L DEP SALDP ++ D++ ELAEE T+V VTH M A +++D+ VF+ G++
Sbjct: 200 EVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGEL 258
Query: 231 VEQNSPEEFFNNPQHERTQAFLS 253
VE + ++ F NP+ +R + +++
Sbjct: 259 VEFDDTDKIFENPESQRVEDYIT 281
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 150 bits (381), Expect = 4e-37
Identities = 79/244 (32%), Positives = 139/244 (56%), Gaps = 22/244 (9%)
Query: 12 PKNNFAVEIKFLNKWYGNFH--ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKH 69
+ ++++ ++ Y N AL++++ + GE V I G +GSGKST+ + + + K
Sbjct: 2 KNKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP 61
Query: 70 QAGEIIINGIPLNDDIRNIHEVRRDVGMVFQH-FNLFSNLSV-------LENCTLGPIWV 121
Q+GEI I+GI ++ + N+ E+R+ +G++FQ+ N F +V LEN
Sbjct: 62 QSGEIKIDGITISKE--NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLEN-------- 111
Query: 122 RKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTS 181
+K+P K +++ KV + D + LSGG+ QR AIA L + P+I++FDE TS
Sbjct: 112 KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
Query: 182 ALDPEMVKEVLDIMIELAEEGM-TMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
LDP+ +E+ IM++L + T++ +TH+M A AD+V+ +G+++ Q P+E
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEIL 230
Query: 241 NNPQ 244
NN +
Sbjct: 231 NNKE 234
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 150 bits (379), Expect = 4e-37
Identities = 92/241 (38%), Positives = 142/241 (58%), Gaps = 16/241 (6%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQA---GEIIINGI 79
LN +YG AL DIN+ + + + + G SG GKST +RC N + A G + I G
Sbjct: 8 LNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG- 66
Query: 80 PLNDDIRN--IHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEE-LAMHY 136
D++N + +R++VGMVFQ N+F S+ EN + P + KD EE L +
Sbjct: 67 ---KDVKNQDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDC 122
Query: 137 LNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVL 192
L KV ++ DK +++ LSGG+ QR IAR+L ++PK++L DEPTSALDP + V+
Sbjct: 123 LQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVI 181
Query: 193 DIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
+ +++ ++M+ VTH M ++VAD F G+++E +EFF NP+ E+T+A+L
Sbjct: 182 EELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYL 241
Query: 253 S 253
S
Sbjct: 242 S 242
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 149 bits (377), Expect = 8e-37
Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 15/208 (7%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLND-------DI 85
L+ ++L++ +GE V I G SGSGKSTL+ + ++ +GE++ NG L+ +
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80
Query: 86 RNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145
RN +G ++Q +L + + LEN + P+ + K K+A+E A L KV + +
Sbjct: 81 RNKK-----LGFIYQFHHLLPDFTALENVAM-PLLIGKKSVKEAKERAYEMLEKVGLEHR 134
Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMT 204
+ S LSGGE QR AIAR+L QP ++L DEPT LD K + D+M+EL E +
Sbjct: 135 INHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS 194
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVE 232
+ VTH++ A++ DRV+ M GQ+
Sbjct: 195 FLVVTHDLELAKK-LDRVLEMKDGQLFN 221
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 149 bits (377), Expect = 9e-37
Identities = 81/219 (36%), Positives = 131/219 (59%), Gaps = 7/219 (3%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87
G+ AL +IN R R+ + GP+G+GKSTL R N I K +G ++I G P+ + N
Sbjct: 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE--N 72
Query: 88 IHEVRRDVGMVFQHFN--LFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145
I EVR+ VG+VFQ+ + +FS +V ++ GPI + + ++ L+ + + +
Sbjct: 73 IREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEEL 130
Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMT 204
R LSGGE +R AIA + M+P++++ DEPT+ LDP+ VKE++D + +L E GMT
Sbjct: 131 RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMT 190
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
++ TH++ ++AD + MD+G+IV + EE F P
Sbjct: 191 VIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 148 bits (376), Expect = 1e-36
Identities = 85/218 (38%), Positives = 131/218 (60%), Gaps = 20/218 (9%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL+D++ +V GE V I G +GSGKSTL + +N + +AG I + G+ L+++ + +V
Sbjct: 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE--TVWDV 79
Query: 92 RRDVGMVFQH-FNLFSNLSV-------LENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA 143
RR VGMVFQ+ N F +V LEN +P+++ E L +V +
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLEN--------IGVPREEMVERVDQALRQVGME 131
Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGM 203
D +R LSGG+ QR AIA L +QP I++ DE TS LDP +EVL+ + +L E+
Sbjct: 132 DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG 191
Query: 204 -TMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
T++ +TH++ A Q ADRV+ M++G+I+E+ +PEE F
Sbjct: 192 ITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIF 228
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 147 bits (372), Expect = 3e-36
Identities = 80/245 (32%), Positives = 137/245 (55%), Gaps = 11/245 (4%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKH-----QAG 72
+EI+ + +YG A++++ + + + + I GPSG GK+TL+R IN + H G
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEG 63
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
+I G + D ++ E R+ VGMVFQ F +S+ +N GP K + +
Sbjct: 64 KIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 133 AMHYLNKVKIADKS----HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMV 188
L K + D+ ++ + LSGG+ QR IAR+L ++P+++L DEPTSALDP
Sbjct: 123 VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIAT 182
Query: 189 KEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248
+ + ++ EL+E T+V VTH +G A ++AD + FM +G+++E E P+++ T
Sbjct: 183 QRIEKLLEELSEN-YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLT 241
Query: 249 QAFLS 253
+ +L+
Sbjct: 242 EEYLT 246
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 146 bits (370), Expect = 5e-36
Identities = 79/248 (31%), Positives = 132/248 (53%), Gaps = 17/248 (6%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQAG 72
+ ++ +YG F AL+ I+L+ + E + GPSG GKST +R +N + G
Sbjct: 6 ITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITG 65
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
+ + G + ++ ++R+ VGMVFQ N F S+ EN G +R KD L
Sbjct: 66 NVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG---LRLAGVKDKAVL 121
Query: 133 AMHYLNKVKIA-------DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
+K A D H S+ LSGG+ QR IAR L ++P ++L DEPTSALDP
Sbjct: 122 DEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP 181
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH 245
++ ++++EL ++ T++ VTH M A +++D+ F G ++E ++ F NP+
Sbjct: 182 ISSTQIENMLLELRDQ-YTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKE 240
Query: 246 ERTQAFLS 253
+ T+ +++
Sbjct: 241 KETEDYIT 248
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 146 bits (369), Expect = 6e-36
Identities = 84/245 (34%), Positives = 145/245 (59%), Gaps = 12/245 (4%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQAG 72
++++ LN WYG AL+++++ + + + GPSG GKST IRC+N + G
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
++ I G + + ++ E+R++VGMVFQ N F +S+ +N GP + KKD + +
Sbjct: 73 KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGP-RIHGANKKDLDGV 130
Query: 133 AMHYLNKVKIADKSH---RSSSL-LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMV 188
+ L + D++ +S +L LSGG+ QR IAR+L ++PKI+LFDEPTSALDP
Sbjct: 131 VENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST 190
Query: 189 KEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248
+ D+++ L ++ T+V VTH M A +++D F G+++E + F+NP+ + T
Sbjct: 191 ARIEDLIMNLKKD-YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKST 249
Query: 249 QAFLS 253
+ +++
Sbjct: 250 EDYIT 254
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 146 bits (369), Expect = 7e-36
Identities = 86/253 (33%), Positives = 144/253 (56%), Gaps = 24/253 (9%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQA-----GEIIIN 77
L+ +YG+ HAL+ +++++ + GPSG GKST +RC+N + G + ++
Sbjct: 51 LDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP---------IWVRKMPKKD 128
G + D N+ E+R+ VGMVFQ N F S+ EN + GP + R + + D
Sbjct: 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDD 169
Query: 129 AE---ELAMHYLNKVKIADKSHR---SSSL-LSGGESQRAAIARSLCMQPKIMLFDEPTS 181
+ EL L + + D+ + ++L LSGG+ QR IAR L + P+++L DEP S
Sbjct: 170 KDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 182 ALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRV-VFMDQGQIVEQNSPEEFF 240
ALDP ++ D++ ELAEE T+V VTH M A +++D+ VF+ G++VE + ++ F
Sbjct: 230 ALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 241 NNPQHERTQAFLS 253
NP+ +R + +++
Sbjct: 289 ENPESQRVEDYIT 301
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 144 bits (365), Expect = 2e-35
Identities = 83/242 (34%), Positives = 137/242 (56%), Gaps = 12/242 (4%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+EI+ L K + HA+ D++L + +GE + G SG GKSTL+R + E+ AG+I+++
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
G+ D+ ++ +R + M+FQ + LF +++V +N G + K+PK + L
Sbjct: 80 GV----DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFG-LKQDKLPKAEIASRVNEML 134
Query: 138 NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE----MVKEVLD 193
V + + + R LSGG+ QR A+ARSL +PK++L DEP ALD + M EV+D
Sbjct: 135 GLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD 194
Query: 194 IMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
I L G+T V VTH+ A +A R+ M++G+ V+ PEE + +P + F+
Sbjct: 195 I---LERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251
Query: 254 QI 255
+
Sbjct: 252 SV 253
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 144 bits (364), Expect = 2e-35
Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 13/241 (5%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQA--GEII 75
+ I L YG L D++L + GE + + G SG GK+TL+R I K G I
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65
Query: 76 INGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMH 135
I D+ + +R + ++FQ++ LF +L V +N G + +KMPK D E
Sbjct: 66 IAD----RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFG-LRAQKMPKADIAERVAD 120
Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE----MVKEV 191
L V + D + + LSGG QR AIAR++ ++P ++L DEP SALD M +E+
Sbjct: 121 ALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI 180
Query: 192 LDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAF 251
+ EL E +T++CVTH+ A +AD+ M G++ P+ ++ P F
Sbjct: 181 AALHEELPE--LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEF 238
Query: 252 L 252
L
Sbjct: 239 L 239
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 143 bits (362), Expect = 4e-35
Identities = 78/248 (31%), Positives = 141/248 (56%), Gaps = 10/248 (4%)
Query: 15 NFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----H 69
N V+++ LN +G HA++D++++ I GPSG GKST++R IN +
Sbjct: 2 NNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 70 QAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA 129
G+I+++ + D + +RR VGMVFQ N F +S+ +N G ++ + +A
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA 121
Query: 130 EELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
+E+ L +V ++ D+ ++ LSGG+ QR IAR++ ++P+++L DEP SALDP
Sbjct: 122 DEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH 245
++ +++ EL E+ T++ VTH M A +V+D F G +VE ++ F P+
Sbjct: 182 ISTLKIEELIEELKEK-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEK 240
Query: 246 ERTQAFLS 253
++T+ +++
Sbjct: 241 KQTEDYIT 248
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 143 bits (362), Expect = 4e-35
Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 16/251 (6%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQA----- 71
A+++K L+ +Y A+ I++++ R + I GPSG GKST I+ +N I + +
Sbjct: 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE 66
Query: 72 GEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEE 131
G + G + D NI+ +RR +GMVFQ N F +S+ EN G K+P+ D +E
Sbjct: 67 GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDE 125
Query: 132 LAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEM 187
+ L ++ DK ++S+ LSGG+ QR IAR+L ++PK++L DEP SALDP
Sbjct: 126 IVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185
Query: 188 VKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQ-----GQIVEQNSPEEFFNN 242
+V +++ L E +T+ VTH M A +V+D F GQ+VE + F+N
Sbjct: 186 TMKVEELIHSLRSE-LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244
Query: 243 PQHERTQAFLS 253
P RT+ ++S
Sbjct: 245 PLDSRTRDYVS 255
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 142 bits (360), Expect = 7e-35
Identities = 66/188 (35%), Positives = 107/188 (56%), Gaps = 8/188 (4%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
L+ +N RGE + + G +G+GKSTL+ +N + + Q+G ++I+G PL+ + + E
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 92 RRDVGMVFQHFN--LFSNLSVLENCTLGPIWVRKMPKKDAE--ELAMHYLNKVKIADKSH 147
R+ VG+VFQ + LF+ V ++ GP + +AE L V +
Sbjct: 67 RQRVGLVFQDPDDQLFAA-DVDQDVAFGP---LNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVC 207
R + LSGGE +R AIA ++ M+P ++L DEPT+ LDP +++L I+ L EGMT+V
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVI 182
Query: 208 VTHEMGFA 215
TH++ A
Sbjct: 183 STHDVDLA 190
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 142 bits (360), Expect = 8e-35
Identities = 74/212 (34%), Positives = 123/212 (58%), Gaps = 12/212 (5%)
Query: 48 IAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSN 107
+ GPSG GK+TL+R + E+ +G I+++G +D+ N+ R + MVFQ + LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDG----EDVTNVPPHLRHINMVFQSYALFPH 56
Query: 108 LSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSL 167
++V EN + +RK+P+ + + + L V++ + + R LSGG+ QR A+AR+L
Sbjct: 57 MTVEENVAF-GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARAL 115
Query: 168 CMQPKIMLFDEPTSALD----PEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVV 223
+PKI+L DEP SALD +M E+ I +L G+T V VTH+ A ++DR+
Sbjct: 116 VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL---GITFVFVTHDQEEAMTMSDRIA 172
Query: 224 FMDQGQIVEQNSPEEFFNNPQHERTQAFLSQI 255
M +G+I + +PEE + P + F+ +I
Sbjct: 173 IMRKGKIAQIGTPEEIYEEPANLFVARFIGEI 204
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 142 bits (359), Expect = 1e-34
Identities = 88/269 (32%), Positives = 139/269 (51%), Gaps = 26/269 (9%)
Query: 6 INSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINH 65
I + N + ++ + YG F A++++ ++ RG+ + GPSG GKST++R +N
Sbjct: 2 IKTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 66 IEK-----HQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW 120
+ G ++ +G L D + EVRR +GMVFQ N F S+ EN G
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFG--- 117
Query: 121 VR-KMPKKDAEELAMHYLNKVKI----ADKSHRSSSLLSGGESQRAAIARSLCMQPKIML 175
R D +EL L K + DK + S LSGG+ QR IAR++ ++P+++L
Sbjct: 118 ARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVIL 177
Query: 176 FDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQ-------- 227
DEP SALDP ++ + M EL ++ T+V VTH M A +V+D F +
Sbjct: 178 MDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSG 236
Query: 228 ---GQIVEQNSPEEFFNNPQHERTQAFLS 253
G +VE N ++ FN+P+ + TQ ++S
Sbjct: 237 GKVGYLVEFNETKKIFNSPKQKATQDYIS 265
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 141 bits (358), Expect = 1e-34
Identities = 84/241 (34%), Positives = 134/241 (55%), Gaps = 19/241 (7%)
Query: 26 WYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQAGEIIINGIP 80
+YG F A++ +N ++L I GPSG GKST +R IN + H G ++ +G
Sbjct: 48 YYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG-- 105
Query: 81 LNDDI--RNIHEV--RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHY 136
+DI + EV R+ +GMVFQ N F S+ +N GP KK EE+
Sbjct: 106 --EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKS 162
Query: 137 LNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVL 192
L K +++D+ +++ LSGG+ QR +AR+L ++P+I+L DEPTSALDP+ ++
Sbjct: 163 LRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE 222
Query: 193 DIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
D++ EL T++ VTH M A +V+D +F +G +VE + F NP+ T+ ++
Sbjct: 223 DLIQEL-RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTEDYI 281
Query: 253 S 253
+
Sbjct: 282 T 282
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 141 bits (358), Expect = 2e-34
Identities = 82/234 (35%), Positives = 124/234 (52%), Gaps = 18/234 (7%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
V ++ + K YG+ +DINL++ GE V+ GPSG GKSTL+R I +E +G++ I
Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
+ND + R VGMVFQ + L+ +LSV EN + G K+ EE+
Sbjct: 64 EKRMND----VPPAERGVGMVFQSYALYPHLSVAENMSFG----LKLAGAKKEEINQRVN 115
Query: 138 NKVKIADKSH---RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP----EMVKE 190
++ +H R LSGG+ QR AI R+L +P + L DEP S LD +M E
Sbjct: 116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175
Query: 191 VLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
+ + L G TM+ VTH+ A +AD++V +D G++ + P E ++ P
Sbjct: 176 ISRLHKRL---GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 141 bits (357), Expect = 2e-34
Identities = 81/251 (32%), Positives = 140/251 (55%), Gaps = 17/251 (6%)
Query: 15 NFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----H 69
+ +E++ LN ++ + H L+++NL++ + + GPSG GKST IR +N +
Sbjct: 1 MYRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 70 QAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA 129
G I ++G+ + D ++ E+R+ VGMVFQ N F S+ +N G +R + D
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG---LRIHGEDDE 116
Query: 130 EELAMHYLNKVKIA-------DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSA 182
+ + +K A DK +S+ LSGG+ QR IAR++ + P+++L DEP SA
Sbjct: 117 DFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176
Query: 183 LDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
LDP ++ D++ +L E+ T+V VTH M A +V+ F G+I+E ++ F N
Sbjct: 177 LDPISTTKIEDLIHKLKED-YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235
Query: 243 PQHERTQAFLS 253
P+ +RT+ +++
Sbjct: 236 PKDKRTEDYIT 246
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 139 bits (353), Expect = 5e-34
Identities = 85/260 (32%), Positives = 139/260 (53%), Gaps = 24/260 (9%)
Query: 6 INSKNPPKNNFAVEIK-----FLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
+ NP ++ + +K F K AL +I+ + + I G SGSGKSTL+
Sbjct: 10 LKVPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLV 69
Query: 61 RCINHIEKHQAGEIIINGI--------------PLNDDIRNIHEVRRDVGMVFQ--HFNL 104
N + K + G I + I P + I+N E+RR V MVFQ + L
Sbjct: 70 THFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL 129
Query: 105 FSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS-HRSSSLLSGGESQRAAI 163
F + ++ ++ GP+ + + K +A++LA YLNK+ + D RS LSGG+ +R AI
Sbjct: 130 FKD-TIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAI 187
Query: 164 ARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVV 223
A L +QP+I++FDEPT+ LDP+ E++ ++++ T+ +TH M +VAD V+
Sbjct: 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247
Query: 224 FMDQGQIVEQNSPEEFFNNP 243
MD+G+I++ +P E F +
Sbjct: 248 VMDKGKILKTGTPYEIFTDQ 267
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 139 bits (352), Expect = 5e-34
Identities = 78/228 (34%), Positives = 134/228 (58%), Gaps = 12/228 (5%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI--- 88
++D +L + GE +I G SGSGKST++R +N + + G+++I+G+ DI I
Sbjct: 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGV----DIAKISDA 98
Query: 89 --HEVRRD-VGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145
EVRR + MVFQ F L +++VL+N G + + + ++ E A+ L +V + +
Sbjct: 99 ELREVRRKKIAMVFQSFALMPHMTVLDNTAFG-MELAGINAEERREKALDALRQVGLENY 157
Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMT 204
+H LSGG QR +AR+L + P I+L DE SALDP + E+ D +++L A+ T
Sbjct: 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRT 217
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
+V ++H++ A ++ DR+ M G++V+ +P+E NNP ++ + F
Sbjct: 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF 265
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 138 bits (350), Expect = 1e-33
Identities = 79/232 (34%), Positives = 141/232 (60%), Gaps = 7/232 (3%)
Query: 13 KNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG 72
+ NF V +K + K +G+ + ++NL + +G V + GPSG GK+T++R + +EK G
Sbjct: 3 QKNF-VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
+I I+G +D+ + +RD+ MVFQ + LF ++S+ EN G + + +PK++ ++
Sbjct: 62 QIFIDG----EDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYG-LKMLGVPKEERKQR 116
Query: 133 AMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVL 192
L V +A R +SGG+ QR A+AR+L ++PK++LFDEP S LD + + +
Sbjct: 117 VKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMR 176
Query: 193 DIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
+ + EL ++ +T + VTH+ A V+D V+ M++G+I++ SP+E + P
Sbjct: 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 138 bits (350), Expect = 1e-33
Identities = 76/218 (34%), Positives = 131/218 (60%), Gaps = 11/218 (5%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL ++N+ + GE V + G +GSGKSTLI+ +N + K +G+III+G+ + D + ++
Sbjct: 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81
Query: 92 RRDVGMVFQH--FNLFSNLSVLENCTLGPIWV----RKMPKKDAEELAMHYLNKVKIADK 145
R+ VG+VFQ+ + LF ++ ++ GPI + ++ + + + L+ DK
Sbjct: 82 RKKVGLVFQYPEYQLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK 140
Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMT 204
S LSGG+ +R AIA + M+PKI++ DEPT+ LDP+ E+L+ + EL +E MT
Sbjct: 141 SPFE---LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT 197
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
++ V+H M ++ADR++ M++G+ Q +P E F
Sbjct: 198 IILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 138 bits (350), Expect = 1e-33
Identities = 76/219 (34%), Positives = 128/219 (58%), Gaps = 8/219 (3%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING--IPLNDDIRNIH 89
AL D+N+++ G V I G +GSGKSTL++ +N + + +G + I I + +
Sbjct: 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81
Query: 90 EVRRDVGMVFQ--HFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKI-ADKS 146
+R+ VG+VFQ LF +V ++ GP+ + ++DA++ A + V + +
Sbjct: 82 PLRKKVGIVFQFPEHQLFEE-TVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEELL 139
Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMTM 205
RS LSGG+ +R AIA L M+P++++ DEPT+ LDP+ KE++++ +L E+G+T
Sbjct: 140 ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTT 199
Query: 206 VCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
V VTH M A + AD++V M +G + Q +P E F +P
Sbjct: 200 VLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 138 bits (349), Expect = 1e-33
Identities = 74/214 (34%), Positives = 122/214 (57%), Gaps = 7/214 (3%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN--IH 89
AL D+NL + G G +GSGKST+++ +N + G + ++ + +N I
Sbjct: 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 90 EVRRDVGMVFQ--HFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK-S 146
++R+ VG+VFQ LF +VL++ GP + +++AE LA L V I++
Sbjct: 82 QIRKKVGLVFQFPESQLFEE-TVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISESLF 139
Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMV 206
++ LSGG+ +R AIA L M+PKI++ DEPT+ LDP+ KE++ + +L + GMT+V
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
Query: 207 CVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
VTH M AD V +++G++V P++ F
Sbjct: 200 LVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 138 bits (350), Expect = 1e-33
Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 15/239 (6%)
Query: 19 EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
E+ LN +YG H LR ++L V +GE + G +G GK+TL++ + + ++G I ++G
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 79 IPLNDDIRNIHE-VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKK-DAEELAMH- 135
+ HE R + V Q +F L+V EN G + + +K E +
Sbjct: 62 EDITK--LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP 119
Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
L ++ R LSGG+ Q+ AIAR+L +PK++L DEPT + P ++K++ ++
Sbjct: 120 VLKEML-----GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI 174
Query: 196 IELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
L E GM ++ V + FAR++ADR M++G++V + +E ++ + +L+
Sbjct: 175 RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL----DEDKVRRYLA 229
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 138 bits (348), Expect = 2e-33
Identities = 92/264 (34%), Positives = 138/264 (52%), Gaps = 28/264 (10%)
Query: 10 NPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKH 69
NP + F VE + +YG F AL D++L + + + GPSG GKSTL+RC N +
Sbjct: 15 NPDHSVFEVE--GVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDL 72
Query: 70 QAGEIIINGIPLNDDIRNIHE-------VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVR 122
G + + D RNI++ +RR VGMVFQ N F S+ EN P
Sbjct: 73 IPGAKVEGRLLYRD--RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAP--RA 127
Query: 123 KMPKKDAEELAMHYLNKVKI----ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDE 178
K + +EL L + I DK + LSGG+ QR IAR++ M+P ++L DE
Sbjct: 128 NGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE 187
Query: 179 PTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMD---------QGQ 229
P SALDP ++V ++ +EL E+ T++ VTH M A +VAD F + +G+
Sbjct: 188 PCSALDPISTRQVEELCLELKEQ-YTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246
Query: 230 IVEQNSPEEFFNNPQHERTQAFLS 253
+VE + E+ F +PQ + + ++S
Sbjct: 247 LVEFSPTEQMFGSPQTKEAREYIS 270
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 136 bits (344), Expect = 5e-33
Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 17/239 (7%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQAGEIIINGIPL 81
YGN+ AL I+L+ E + GPSG GKST +RC+N + GEI G +
Sbjct: 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI 73
Query: 82 NDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVK 141
++ E+R++VGMVFQ F SV +N G ++ KD E + +K
Sbjct: 74 YGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG---LKIAGVKDKELIDQRVEESLK 129
Query: 142 IA-------DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
A D R++ SGG+ QR IAR+L ++PK++L DEPTSALDP E+ +
Sbjct: 130 QAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189
Query: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
++EL + T + VTH + A +++D+ F+ G ++E EE F P+ + T +L+
Sbjct: 190 LMELKHQ-YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQITSDYLN 247
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 136 bits (345), Expect = 5e-33
Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 25/238 (10%)
Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIP-LNDDIRNIH 89
AL ++ + RG+ + + G SG GKSTL R + IE GE+ G L D
Sbjct: 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQK 88
Query: 90 EVRRDVGMVFQHFNLFSNL-------SVLE-----NCTLGPIWVRKMPKKDAEELAMHYL 137
+R+ + +VFQ N + +L +LE N +L + E A+ +
Sbjct: 89 LLRQKIQIVFQ--NPYGSLNPRKKVGQILEEPLLINTSLS--------AAERREKALAMM 138
Query: 138 NKVKI-ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMI 196
KV + + R + SGG+ QR AIAR+L + P +++ DEP SALD + +VL++M+
Sbjct: 139 AKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
Query: 197 ELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
+L +E G++ V ++H++ +AD V+ M G+ VE+ + E+ FNNP+H TQA LS
Sbjct: 199 DLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLS 256
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 136 bits (345), Expect = 5e-33
Identities = 67/234 (28%), Positives = 126/234 (53%), Gaps = 10/234 (4%)
Query: 15 NFAVEIKFLNKWY--GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG 72
+ +E++ L+ Y G AL+ ++L++ G + + GP+G+GKSTL+ +N I Q G
Sbjct: 2 DNIIEVEDLHFRYKDGT-KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFN--LFSNLSVLENCTLGPIWVRKMPKKDAE 130
+ + G +N N VR VG+VFQ + +FS+ +V ++ GP+ + + K + E
Sbjct: 61 RVKVMGREVNA--ENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAFGPVNMG-LDKDEVE 116
Query: 131 ELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE 190
L V++ D + LS G+ +R AIA L M P +++ DEP + LDP +
Sbjct: 117 RRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 191 VLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
+++I+ L +G T++ TH++ A + AD+V+ + +G+++ + +
Sbjct: 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDED 229
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 136 bits (344), Expect = 5e-33
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 18/229 (7%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
+K G+F +L D + + I G SGSGK+TLIR I + + GEI++NG L
Sbjct: 5 FSKRLGDF-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF 62
Query: 83 DDIRNI----HEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLN 138
D + I +R +G VFQ LF +LSV N G M + E + +
Sbjct: 63 DSRKGIFLPPE--KRRIGYVFQEARLFPHLSVRGNLRYG------MKRARPSERRISFER 114
Query: 139 KVKIADKSH---RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
+++ H R LSGGE QR AI R+L P+++L DEP +ALD E+L +
Sbjct: 115 VIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174
Query: 196 IELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
L E G+ ++ V+H + ++ADRVV ++ G++ E + +P
Sbjct: 175 ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 135 bits (342), Expect = 8e-33
Identities = 82/247 (33%), Positives = 133/247 (53%), Gaps = 30/247 (12%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+ ++ L K + AL ++LN+ GE V + GPSGSGKSTL+R H +G I +
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLR-------HLSGLITGD 57
Query: 78 GIP------LNDDI-------RNIHEVRRDVGMVFQHFNLFSNLSVLENCTLG-----PI 119
L + R+I + R + G +FQ FNL + LSVLEN +G P
Sbjct: 58 KSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPF 117
Query: 120 W---VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLF 176
W ++ + A+ L +V + +H+ S LSGG+ QR AIAR+L Q K++L
Sbjct: 118 WRTCFSWFTREQKQR-ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176
Query: 177 DEPTSALDPEMVKEVLDIMIELAE-EGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNS 235
DEP ++LDPE + V+D + ++ + +G+T+V H++ +A + +R+V + QG + S
Sbjct: 177 DEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
Query: 236 PEEFFNN 242
++F N
Sbjct: 237 SQQFDNE 243
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 135 bits (341), Expect = 1e-32
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 11/216 (5%)
Query: 22 FLNKWYGNFHAL-RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIP 80
L+K + L + +LNV GE V I GPSG+GKSTL+ I + +G I +N
Sbjct: 2 ALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQ- 60
Query: 81 LNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL-AMHYL-N 138
+ +R V M+FQ NLF++L+V +N LG + K +AE+ +
Sbjct: 61 ---SHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG---LHPGLKLNAEQQEKVVDAAQ 114
Query: 139 KVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
+V IAD R LSGG+ QR A+AR L I+L DEP SALDP + +E+L ++ +L
Sbjct: 115 QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQL 174
Query: 199 AEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQ 233
E T++ VTH + AR +A ++ + QG+I
Sbjct: 175 CSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 135 bits (340), Expect = 2e-32
Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 33/266 (12%)
Query: 11 PPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ 70
+ ++ K +YGNF A+RD ++ + + E GPSG GKST++R +N +
Sbjct: 2 VSEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND-- 59
Query: 71 AGEIIINGIPLNDDIRNIHE-----------VRRDVGMVFQHFNLFSNLSVLENCTLGPI 119
++ G + + + VRR +GMVFQ N FS +S+ +N G
Sbjct: 60 ----LVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNVAFGLR 114
Query: 120 WVRKMPKKDAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIML 175
R K D + H L ++ DK S LSGG+ QR IAR++ +P+++L
Sbjct: 115 LNRY--KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLL 172
Query: 176 FDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMD--------Q 227
DEP SALDP + V ++M+EL ++ T+ VTH M A +VAD F
Sbjct: 173 LDEPCSALDPIATRRVEELMVELKKD-YTIALVTHNMQQAIRVADTTAFFSVDISQGTRT 231
Query: 228 GQIVEQNSPEEFFNNPQHERTQAFLS 253
G +VE + F NP+ + T ++S
Sbjct: 232 GYLVEMGPTAQIFQNPREQLTSDYIS 257
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 135 bits (341), Expect = 2e-32
Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 44/227 (19%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
L D++L + GE V I GPSGSGKSTL+R + E ++G + +G L ++ V
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG--LDVQAV 525
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLG-PI-----W-----------VRKMPKKDAEELAM 134
RR +G+V Q+ L S S+ EN G P+ W +R MP + M
Sbjct: 526 RRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP------MGM 578
Query: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALD---PEMVKEV 191
H + I++ LSGG+ QR IAR+L +P+I+LFDE TSALD +V E
Sbjct: 579 HTV----ISE----GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES 630
Query: 192 LDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
L+ + +T + + H + R ADR+ +D G++V+Q + +E
Sbjct: 631 LERL------KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDE 670
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 134 bits (341), Expect = 2e-32
Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 14/215 (6%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L D++L + GE V I GP+G+GKSTL+R ++ +GE+ +NG PL D + E+
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD--WSPAELA 75
Query: 93 RDVGMVFQHFNL-FSNLSVLENCTLGPI-WVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150
R ++ QH +L F +V E +G + + + L L +V +A + R
Sbjct: 76 RRRAVLPQHSSLSFP-FTVEEVVAMGRAPHGL--SRAEDDALVAAALAQVDLAHLAGRDY 132
Query: 151 SLLSGGESQRAAIARSLC------MQPKIMLFDEPTSALDPEMVKEVLDIMIELA-EEGM 203
LSGGE QR +AR L P+ +L DEPTSALD VL + +LA E G+
Sbjct: 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGL 192
Query: 204 TMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
++ V H++ A + ADR+V + QG++V +P E
Sbjct: 193 AVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 134 bits (339), Expect = 2e-32
Identities = 75/213 (35%), Positives = 123/213 (57%), Gaps = 4/213 (1%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL +INL + +GE + I G +GSGKSTL +N + + Q G+++++GI D + +
Sbjct: 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGD-FSKLQGI 75
Query: 92 RRDVGMVFQHFNL-FSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150
R+ VG+VFQ+ F +V E+ GP + +P + + L ++ + HRS
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRHRSP 134
Query: 151 SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTH 210
LSGG+ Q A+A L M+P+ ++FDE TS LDP+ VL+ + +L E+G T+V +TH
Sbjct: 135 KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH 194
Query: 211 EMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
+ ADR++ MD+G+IV + PE ++
Sbjct: 195 NLE-ELHDADRIIVMDRGKIVLEGEPENVLSDV 226
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 132 bits (333), Expect = 9e-32
Identities = 87/263 (33%), Positives = 143/263 (54%), Gaps = 21/263 (7%)
Query: 5 PINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCIN 64
P +P E+ LN +YG + AL++IN+ V + + GPSG GKST +RC N
Sbjct: 6 PAGDVSP--TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFN 63
Query: 65 HIE-----KHQAGEIIINGIPLNDDIRNIH----EVRRDVGMVFQHFNLFSNLSVLENCT 115
+ H GEII++ P N +I + EVR + MVFQ N F S+ EN
Sbjct: 64 RMHDLYPGNHYEGEIILH--PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVA 120
Query: 116 LGPIWVRKMPKKDA-EELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQ 170
G + +R + ++ EE + L ++ D+ + LSGG+ QR IAR+L
Sbjct: 121 YG-LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATD 179
Query: 171 PKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
P+I+LFDEPTSALDP + +++ +L + +T++ VTH M A +V+D +M G++
Sbjct: 180 PEILLFDEPTSALDPIATASIEELISDLKNK-VTILIVTHNMQQAARVSDYTAYMYMGEL 238
Query: 231 VEQNSPEEFFNNPQHERTQAFLS 253
+E + + F P++++T+ +++
Sbjct: 239 IEFGATDTIFIKPKNKQTEDYIT 261
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 132 bits (334), Expect = 9e-32
Identities = 78/213 (36%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL D+NL V +GE ++I G +GSGKST+ + +N + G++ ++G+ D N+ ++
Sbjct: 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD-TSDEENLWDI 83
Query: 92 RRDVGMVFQH-FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150
R GMVFQ+ N V E+ GP + +P ++ E L KV + + +
Sbjct: 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYEYRRHAP 142
Query: 151 SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMTMVCVT 209
LLSGG+ QR AIA L M+P+ ++FDEPT+ LDP +EV++ + EL + G+T++ +T
Sbjct: 143 HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202
Query: 210 HEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
H M A + ADR++ MD G++V + +P+E F
Sbjct: 203 HYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 132 bits (332), Expect = 1e-31
Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 13/246 (5%)
Query: 19 EIKFLNKWYGNF--HALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIE-----KHQA 71
EI+ N WY N H L D+NL++ R + GPSG GKST +R +N +
Sbjct: 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 72 GEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP----IWVRKMPKK 127
GEI G + E+R +GMVFQ F +S+ +N GP I RK+ +K
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEK 200
Query: 128 DAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEM 187
E+ ++ D ++ + LSGG+ QR IAR++ ++P+++L DEPTSALDP
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 188 VKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
++ ++++EL ++ +++ VTH M A++++D VF QG I E + F +P+++R
Sbjct: 261 TAKIEELILELKKK-YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKR 319
Query: 248 TQAFLS 253
T+ ++S
Sbjct: 320 TKDYIS 325
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 132 bits (333), Expect = 1e-31
Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 29/239 (12%)
Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN------------ 77
AL ++++ + +GE + I G +GSGK+T I +N + G I
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKE 79
Query: 78 ----------GIPLNDDIRNIHEVRRDVGMVFQ--HFNLFSNLSVLENCTLGPIWVRKMP 125
I+ I E+RR VG+VFQ + LF ++ ++ GP+ + +
Sbjct: 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKDIIFGPVSM-GVS 137
Query: 126 KKDAEELAMHYLNKVKIADKSH--RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSAL 183
K++A++ A Y+ V + D+S+ RS LSGG+ +R A+A L M+P ++FDEPT+ L
Sbjct: 138 KEEAKKRAAKYIELVGL-DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGL 196
Query: 184 DPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
DP+ VKE+L+I L ++G T++ VTH++ + R +F G+I++ + ++
Sbjct: 197 DPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 132 bits (333), Expect = 1e-31
Identities = 72/217 (33%), Positives = 125/217 (57%), Gaps = 7/217 (3%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING--IPLNDDIRNIHE 90
L +I+ + G V + G +GSGKSTL++ N + K +G I I G I +N+ +
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 91 VRRDVGMVFQ--HFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK-SH 147
+R+ V +VFQ LF N +VL++ GP + +A+E A+ +L KV +++
Sbjct: 83 LRKKVSLVFQFPEAQLFEN-TVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLIS 140
Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVC 207
+S LSGG+ +R AIA + +P+I+ DEP + LDPE KE++ + + + G T++
Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200
Query: 208 VTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
VTH M + AD V+ ++ G++++ SP+E F++ +
Sbjct: 201 VTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 131 bits (331), Expect = 2e-31
Identities = 75/212 (35%), Positives = 129/212 (60%), Gaps = 10/212 (4%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L D++ +V +GE + I G +GSGKST +R I+ + + ++G+III+G L ++ N+ ++R
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE--NVWDIR 80
Query: 93 RDVGMVFQH-FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSS 151
+GMVFQ+ N F +V ++ G + + +P ++ +E L V + D R +
Sbjct: 81 HKIGMVFQNPDNQFVGATVEDDVAFG-LENKGIPHEEMKERVNEALELVGMQDFKEREPA 139
Query: 152 LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMVCVTH 210
LSGG+ QR AIA ++ M+PKI++ DE TS LDPE E++ + + ++ MT++ +TH
Sbjct: 140 RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH 199
Query: 211 EMGFARQVA--DRVVFMDQGQIVEQNSPEEFF 240
++ +VA DRV+ M GQ+ ++P E F
Sbjct: 200 DLD---EVALSDRVLVMKNGQVESTSTPRELF 228
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 130 bits (328), Expect = 5e-31
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 6/206 (2%)
Query: 37 NLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVG 96
+L V RGERV I GPSG+GKSTL+ I +G + +NG D RR V
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ----DHTTTPPSRRPVS 74
Query: 97 MVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGG 156
M+FQ NLFS+L+V +N LG K+ E+L ++ I D R LSGG
Sbjct: 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH-AIARQMGIEDLLARLPGQLSGG 133
Query: 157 ESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMTMVCVTHEMGFA 215
+ QR A+AR L + I+L DEP SALDP + +E+L ++ ++ E +T++ V+H + A
Sbjct: 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193
Query: 216 RQVADRVVFMDQGQIVEQNSPEEFFN 241
++A R + + G+I +E +
Sbjct: 194 ARIAPRSLVVADGRIAWDGPTDELLS 219
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 129 bits (325), Expect = 1e-30
Identities = 76/240 (31%), Positives = 136/240 (56%), Gaps = 12/240 (5%)
Query: 12 PKNNFAVEIKFLNKWYGNFH--ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHI--- 66
K+N VE K ++ Y + AL DI+ ++ RG + G +GSGKST+ + IN +
Sbjct: 1 MKDN-IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
Query: 67 EKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQH-FNLFSNLSVLENCTLGPIWVRKMP 125
+ + +I ++GI L + ++R VG+VFQ+ N F +V ++ G + R +P
Sbjct: 60 DDNPNSKITVDGITLTAK--TVWDIREKVGIVFQNPDNQFVGATVGDDVAFG-LENRAVP 116
Query: 126 KKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
+ + ++ L V + D + LSGG+ QR AIA L ++PKI++ DE TS LDP
Sbjct: 117 RPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP 176
Query: 186 EMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
+++L ++ +L ++ +T++ +TH++ A AD+V+ +D G+++ Q SP E F+ +
Sbjct: 177 AGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSKVE 235
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 127 bits (321), Expect = 3e-30
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 15/229 (6%)
Query: 35 DINLNVLRGERVIIAGPSGSGKSTLIRCINHI----EKHQAGEIIINGIPLND-DIRNIH 89
D+NL++ RGE + + G SGSGKS I + +GEI+++G PL IR
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG-- 61
Query: 90 EVRRDVGMVFQH-FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS-- 146
R + + Q+ F+ L + N + + K A L + L V + D
Sbjct: 62 ---RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 147 -HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMT 204
+ LSGG QR IA +L ++P ++ DEPT+ LD VL ++ EL + G
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG 178
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
++ +TH++G ++AD V MD G+IVE+ + +E F NP+HE T+ LS
Sbjct: 179 ILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 127 bits (321), Expect = 3e-30
Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 16/228 (7%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
A+E+ L+ YG AL D++ V GE V + GP+G+GKSTL + + Q G+I +
Sbjct: 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60
Query: 77 NGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTL-----GPIWVRKMPKKDAEE 131
G L R + R +G+VFQ L +LSV +N G + + +A E
Sbjct: 61 AGHDLRRAPRAA--LAR-LGVVFQQPTLDLDLSVRQNLRYHAALHG------LSRAEARE 111
Query: 132 LAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEV 191
L ++ +A+++ L+GG +R IAR+L +P ++L DEPT LDP +
Sbjct: 112 RIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171
Query: 192 LDIMIELA-EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+ + L ++G++++ TH + + DR+V + +G+++ + E
Sbjct: 172 VAHVRALCRDQGLSVLWATHLVDEI-EADDRLVVLHRGRVLADGAAAE 218
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 126 bits (318), Expect = 7e-30
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 35/225 (15%)
Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIH- 89
AL +++L + GE+V I G GSGKSTL++ + + + G ++++G+ DIR I
Sbjct: 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV----DIRQIDP 534
Query: 90 -EVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIAD---- 144
++RR++G V Q LF ++ +N LG P D EE+ L ++A
Sbjct: 535 ADLRRNIGYVPQDPRLFYG-TLRDNIALG------APYADDEEI----LRAAELAGVTEF 583
Query: 145 -KSH----------RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193
+ H R S LSGG+ Q A+AR+L P I+L DEPTSA+D + D
Sbjct: 584 VRRHPDGLDMQIGERGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 194 IMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+ G T+V VTH V DR++ MD G+IV ++
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSLLDLV-DRIIVMDNGRIVADGPKDQ 685
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 125 bits (316), Expect = 7e-30
Identities = 68/215 (31%), Positives = 126/215 (58%), Gaps = 12/215 (5%)
Query: 48 IAGPSGSGKSTLIRCINHIEK-----HQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHF 102
+ GP+GSGK+T +R +N + +G++++ G + + R++ E RR VGM+FQ
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN-YRDVLEFRRRVGMLFQRP 110
Query: 103 NLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV----KIADKSHRSSSLLSGGES 158
N F +S+++N G + +P+K+ +A L +V + D+ S LSGG+
Sbjct: 111 NPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169
Query: 159 QRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQV 218
Q +AR+L + P+++L DEPTSALDP +++ + + LA+ +T++ VTH + A ++
Sbjct: 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARI 228
Query: 219 ADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
+DR G++VE+ E+ F++P+H T +++
Sbjct: 229 SDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVA 263
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 125 bits (315), Expect = 1e-29
Identities = 76/245 (31%), Positives = 131/245 (53%), Gaps = 11/245 (4%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK-----HQAG 72
++I+ +N +Y L++IN++ + I GPSG GKSTL+R +N + G
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64
Query: 73 EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
++++ + ++ +R+ VGMVFQ N F S+ +N GP + + +E+
Sbjct: 65 AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEV 123
Query: 133 AMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMV 188
L + ++ D H+S LSGG+ QR IAR L ++P+++L DEP SALDP
Sbjct: 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183
Query: 189 KEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248
+ ++M EL ++ T+ VTH M A + +D F+ G +VE E F+ P+ +RT
Sbjct: 184 MRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRT 242
Query: 249 QAFLS 253
+ +++
Sbjct: 243 EDYIT 247
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 125 bits (314), Expect = 1e-29
Identities = 78/229 (34%), Positives = 132/229 (57%), Gaps = 11/229 (4%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING--IPLNDDIRNIHE 90
L+DI + + I GPSGSGKSTL++ +N + + +I ++G + DI I
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 91 V--RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMP-KKDAEELAMHYLNKV----KIA 143
+ R++VGMVFQ N F +LS+ +N P+ + K++ +++ L KV ++
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAY-PLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGM 203
D+ + +S LSGG+ QR IAR+L ++PK++L DEPTS +D + + ++ EL E +
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE-I 203
Query: 204 TMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
+V V+H +VAD V F+ G++VE S E F +P++E T+ ++
Sbjct: 204 AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYV 252
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 124 bits (312), Expect = 3e-29
Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 29/220 (13%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L ++NL++ GE + I GPSGSGKSTL + + + Q G+++++G+ L I + +R
Sbjct: 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA--IADPAWLR 530
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL--------AMHYLNKVK--- 141
R +G+V Q LFS S+ +N L P E + A +++++
Sbjct: 531 RQMGVVLQENVLFSR-SIRDNIALCN------PGAPFEHVIHAAKLAGAHDFISELPQGY 583
Query: 142 ---IADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
+ +K + LSGG+ QR AIAR+L P+I++FDE TSALD E ++ M E+
Sbjct: 584 NTEVGEKG----ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI 639
Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
G T++ + H + R DR++ +++GQI E EE
Sbjct: 640 C-RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEE 677
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 124 bits (312), Expect = 3e-29
Identities = 71/212 (33%), Positives = 116/212 (54%), Gaps = 15/212 (7%)
Query: 20 IKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGI 79
+ ++K YG L ++L++ G+ V + G SG GKSTL+R + +E AGE++
Sbjct: 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74
Query: 80 PLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNK 139
PL E R D ++FQ L V++N LG K + A+ L
Sbjct: 75 PL-------AEAREDTRLMFQDARLLPWKKVIDNVGLGL-------KGQWRDAALQALAA 120
Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL- 198
V +AD+++ + LSGG+ QR A+AR+L +P ++L DEP ALD E+ D++ L
Sbjct: 121 VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180
Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
+ G T++ VTH++ A +ADRV+ +++G+I
Sbjct: 181 QQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 122 bits (309), Expect = 6e-29
Identities = 71/210 (33%), Positives = 120/210 (57%), Gaps = 8/210 (3%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING---IPLNDDIRNIH 89
L+ I+L++ GE V I G SGSGKSTL+ + ++K +G + G L+ D +
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAD--ALA 81
Query: 90 EVRRD-VGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHR 148
++RR+ G +FQ ++L S+L+ +N + ++ + +K A L ++ + D+
Sbjct: 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRLGLEDRVEY 140
Query: 149 SSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCV 208
S LSGG+ QR +IAR+L +++L DEPT ALD +EV+ I+ +L + G T++ V
Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIV 200
Query: 209 THEMGFARQVADRVVFMDQGQIVEQNSPEE 238
TH+ A Q A+RV+ + G+IV +E
Sbjct: 201 THDPQVAAQ-AERVIEIRDGEIVRNPPAQE 229
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 122 bits (309), Expect = 7e-29
Identities = 74/214 (34%), Positives = 109/214 (50%), Gaps = 14/214 (6%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL I+L + GE V + G SGSGKSTL+ I + +G+I+++G L D + +
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD--YTLASL 404
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEE-LAMHYLNKV--KIADKSH- 147
RR V +V Q LF N ++ N G + + + E LA Y K+
Sbjct: 405 RRQVALVSQDVVLF-NDTIANNIAYGRT--EQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 148 ---RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204
+ LLSGG+ QR AIAR+L I++ DE TSALD E + V + L + T
Sbjct: 462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTT 521
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+V + H + + ADR+V MD G+IVE+ + E
Sbjct: 522 LV-IAHRLS-TIEKADRIVVMDDGRIVERGTHNE 553
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 122 bits (308), Expect = 8e-29
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 23 LNKWY--GNFHA--LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
L K Y G+ L +++ ++ GE + I G SGSGKSTL+ + ++ +G++I NG
Sbjct: 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70
Query: 79 IPLND-------DIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEE 131
P++ ++RN + +G ++Q +L + + LEN + P+ + K +
Sbjct: 71 QPMSKLSSAAKAELRN-----QKLGFIYQFHHLLPDFTALENVAM-PLLIGKKKPAEINS 124
Query: 132 LAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEV 191
A+ L V + +++ S LSGGE QR AIAR+L P+++L DEPT LD +
Sbjct: 125 RALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
Query: 192 LDIMIEL-AEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQ 233
++ EL +G + VTH++ A+++ R + M G++ +
Sbjct: 185 FQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAE 226
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 122 bits (308), Expect = 9e-29
Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII---NGI--PLN 82
G + + +L++ GE ++ G SGSGKS+L+R +N + G +++ +G N
Sbjct: 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVAN 94
Query: 83 DDIRNIHEVRRD-VGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVK 141
D + +R V MVFQ F L L+V EN G + ++ MP+ + + L V
Sbjct: 95 CDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG-LEMQGMPEAERRKRVDEQLELVG 153
Query: 142 IADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE 201
+A + + LSGG QR +AR+ M I+L DEP SALDP + ++ D ++EL +
Sbjct: 154 LAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK 213
Query: 202 -GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
T++ V+H++ A ++ +R+ M+ G+I++ +PEE NP ++ F++
Sbjct: 214 LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVA 266
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 122 bits (307), Expect = 9e-29
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 19/249 (7%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII---NGI 79
L+K YG RD++ ++ GE + I G SGSGKSTL+ C+ G +G
Sbjct: 9 LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGA 68
Query: 80 PLNDDIRNIHEVRR------DVGMVFQHF--NLFSNLSVLENCT--LGPIWVRKMPKKDA 129
L ++ + E R + G V Q+ L +S N L I R A
Sbjct: 69 EL--ELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRA 126
Query: 130 EELAMHYLNKVKI-ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMV 188
A +L +V+I + SGG QR IAR+L +P+++ DEPT LD +
Sbjct: 127 A--AHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ 184
Query: 189 KEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
+LD++ L + G+ ++ VTH++G AR +A R++ M QG++VE ++ ++PQH
Sbjct: 185 ARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPY 244
Query: 248 TQAFLSQII 256
TQ +S I+
Sbjct: 245 TQLLVSSIL 253
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 122 bits (307), Expect = 1e-28
Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 43/230 (18%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL +NL V GE V + GPSG+GKSTL + + Q+G I+++G+ L E+
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPA--EL 412
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSS 151
R + +V Q LF+ SV+EN G P EE V+ A ++ +
Sbjct: 413 RARMALVPQDPVLFAA-SVMENIRYG------RPDATDEE--------VEAAARAAHAHE 457
Query: 152 L------------------LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE---MVKE 190
LSGG+ QR AIAR++ I+L DE TSALD E +V++
Sbjct: 458 FISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ 517
Query: 191 VLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
L+ ++ +G T + + H + ADR+V MDQG+IV Q + E
Sbjct: 518 ALETLM----KGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQGTHAELI 562
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 121 bits (306), Expect = 2e-28
Identities = 79/251 (31%), Positives = 117/251 (46%), Gaps = 42/251 (16%)
Query: 10 NPPKNNFAVEIKFLN---KWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHI 66
++F + + + + D++ G+ V I GP+G+GKSTLI + +
Sbjct: 325 AIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV 384
Query: 67 EKHQAGEIIINGIPLNDDIR--NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKM 124
Q+G I+I+G DIR +RR++ +VFQ LF N S+ +N +G
Sbjct: 385 FDPQSGRILIDGT----DIRTVTRASLRRNIAVVFQDAGLF-NRSIEDNIRVG------- 432
Query: 125 PKKDAEELAMHYLNKVK-----IADKSH--------RSSSLLSGGESQRAAIARSLCMQP 171
+ DA + M + I K R L SGGE QR AIAR+L P
Sbjct: 433 -RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL-SGGERQRLAIARALLKDP 490
Query: 172 KIMLFDEPTSALDPEM---VKEVLD-IMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQ 227
I++ DE TSALD E VK LD +M +G T + H + R ADR++ D
Sbjct: 491 PILILDEATSALDVETEAKVKAALDELM-----KGRTTFIIAHRLSTVRN-ADRILVFDN 544
Query: 228 GQIVEQNSPEE 238
G++VE S +E
Sbjct: 545 GRVVESGSFDE 555
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 120 bits (303), Expect = 3e-28
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 33/210 (15%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
ALR ++ V GERV + GPSG+GKSTL+ + G I +NG+PL D +
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD--ADADSW 394
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM---------HYLNKV-- 140
R + V QH LF+ ++ EN L + DA + +
Sbjct: 395 RDQIAWVPQHPFLFAG-TIAENIRLA--------RPDASDAEIRRALERAGLDEFVAALP 445
Query: 141 -----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
I + LSGG++QR A+AR+ ++L DEPT+ LD E V + +
Sbjct: 446 QGLDTLIGEGGAG----LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEAL 501
Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFM 225
LA +G T++ VTH + A ADR+V +
Sbjct: 502 RALA-QGRTVLLVTHRLALAE-RADRIVVL 529
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 120 bits (302), Expect = 4e-28
Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN-- 87
A+ D+N +G+ I G +GSGKSTLI+ IN + K G + ++ I + ++
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79
Query: 88 IHEVRRDVGMVFQ--HFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA-D 144
I VR+ +GMVFQ LF + +V GP KM + + A L + + D
Sbjct: 80 IRPVRKRIGMVFQFPESQLFED-TVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRD 137
Query: 145 KSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA-EEGM 203
+S +SGG+ ++ AI L M P I++ DEPT+ LDP+ ++V+ ++ L +E
Sbjct: 138 VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK 197
Query: 204 TMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
T++ V+H+M + AD V+ M +G IV Q SP+E F
Sbjct: 198 TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 120 bits (302), Expect = 5e-28
Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 11/195 (5%)
Query: 50 GPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR--DVGMVFQHFNLFSN 107
GP+GSGKSTL+R + + AG + + G+ D+ + R V +V Q +
Sbjct: 34 GPNGSGKSTLLRLLAGALRPDAGTVDLAGV----DLHGLSRRARARRVALVEQDSDTAVP 89
Query: 108 LSVLENCTLGPIWVRKM----PKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAI 163
L+V + LG I R + DA + L + +++ + R S LSGGE QR +
Sbjct: 90 LTVRDVVALGRIPHRSLWAGDSPHDAA-VVDRALARTELSHLADRDMSTLSGGERQRVHV 148
Query: 164 ARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVV 223
AR+L +PK++L DEPT+ LD E L ++ ELA G+T+V H++ A D VV
Sbjct: 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVV 208
Query: 224 FMDQGQIVEQNSPEE 238
+D G++V P E
Sbjct: 209 VLDGGRVVAAGPPRE 223
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 119 bits (302), Expect = 5e-28
Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 21/236 (8%)
Query: 17 AVEIKFLNKWY-GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75
++++ + K Y G ++ I+L+V GE +++ GPSG GKSTL+R + +E+ +GEI
Sbjct: 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 76 INGIPLNDDIRNIHEVR---RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL 132
I G R ++E+ RD+ MVFQ++ L+ ++SV EN G + +R MPK + EE
Sbjct: 63 IGG-------RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYG-LKIRGMPKAEIEER 114
Query: 133 AMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP----EMV 188
+++ R LSGG+ QR A+ R++ +P + LFDEP S LD +M
Sbjct: 115 VAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174
Query: 189 KEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQ-NSPEEFFNNP 243
E+ + L T + VTH+ A +ADRVV M+ G EQ +P E + P
Sbjct: 175 LEIQRLHRRL---KTTSLYVTHDQVEAMTLADRVVVMNGGVA-EQIGTPVEVYEKP 226
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 120 bits (302), Expect = 5e-28
Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 25/217 (11%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
+ + +L + G+RV + G SGSGKST+ + + + + +GEI+ +GIP + R + +
Sbjct: 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREV--LA 552
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKD----AEELAMHYLNKVKIADKS-- 146
V MV Q LF +V +N TL W +P D ++ A+H + I +
Sbjct: 553 NSVAMVDQDIFLFEG-TVRDNLTL---WDPTIPDADLVRACKDAAIHDV----ITSRPGG 604
Query: 147 -----HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE 201
+ LSGG+ QR IAR+L P I++ DE TSALDPE K + D L
Sbjct: 605 YDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD---NLRRR 661
Query: 202 GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
G T + V H + R D ++ +++G++V++ + EE
Sbjct: 662 GCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEE 697
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 119 bits (301), Expect = 6e-28
Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L+ +NL + +GE + + G SG GKSTL+ I+ + + +G +I+ G + I E
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG-------KQITEPG 53
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWV-RKMPKKDAEELAMHYLNKVKIADKSHRSSS 151
D +VFQ+++L L+V EN L V + K + + ++ V + + + +
Sbjct: 54 PDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 152 LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMVCVTH 210
LSGG QR AIAR+L ++PK++L DEP ALD + + ++++ EE +T++ VTH
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
Query: 211 EMGFARQVADRVVFMDQ------GQIVEQNSP-----EEFFNNPQH 245
++ A ++DRVV + GQI+E P E +P +
Sbjct: 174 DVDEALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRLEVVEDPSY 219
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 118 bits (299), Expect = 1e-27
Identities = 80/254 (31%), Positives = 122/254 (48%), Gaps = 31/254 (12%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII---NGI 79
L K YG RD++ ++ GE + I G SGSGK+TL+ ++ AGE+ +G
Sbjct: 12 LTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQ 71
Query: 80 PLNDDIRNIHEVRR------DVGMVFQHF--NLFSNLSVLENCTLGPIWVRKMPK----- 126
D+ + E R + G V QH L +S N I R M
Sbjct: 72 LR--DLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGN-----IGERLMAVGARHY 124
Query: 127 KDAEELAMHYLNKVKIA----DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSA 182
D A +L +V+I D + SGG QR IAR+L P+++ DEPT
Sbjct: 125 GDIRATAGDWLERVEIDAARIDDLPTT---FSGGMQQRLQIARNLVTHPRLVFMDEPTGG 181
Query: 183 LDPEMVKEVLDIMIEL-AEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
LD + +LD++ L E G+ +V VTH++ AR +A R++ M QG++VE ++ +
Sbjct: 182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241
Query: 242 NPQHERTQAFLSQI 255
+PQH TQ +S +
Sbjct: 242 DPQHPYTQLLVSSV 255
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 118 bits (297), Expect = 2e-27
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 25/197 (12%)
Query: 26 WYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDI 85
+ G+ L ++L++ GERV I GPSGSGKSTL+ + + GE+ ++G+ ++
Sbjct: 344 YPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS-- 401
Query: 86 RNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA-EELAMHYLNKVKIAD 144
E+RR + + Q +LF +V +N LG + DA +E L +V +AD
Sbjct: 402 -LQDELRRRISVFAQDAHLFDT-TVRDNLRLG--------RPDATDEELWAALERVGLAD 451
Query: 145 -----------KSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193
+ LSGGE QR A+AR+L I+L DEPT LD E+L+
Sbjct: 452 WLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLE 511
Query: 194 IMIELAEEGMTMVCVTH 210
++ A G T+V +TH
Sbjct: 512 DLLA-ALSGKTVVVITH 527
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 117 bits (294), Expect = 3e-27
Identities = 74/249 (29%), Positives = 132/249 (53%), Gaps = 15/249 (6%)
Query: 15 NFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKST----LIRCINHIEKHQ 70
F + L + + +++I+ + GE + + G SGSGKST L+R IN
Sbjct: 284 AFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-----S 338
Query: 71 AGEIIINGIPLND-DIRNIHEVRRDVGMVFQHFN--LFSNLSVLENCTLG-PIWVRKMPK 126
GEI +G PL++ + R + VR + +VFQ N L L+VL+ G + +
Sbjct: 339 QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSA 398
Query: 127 KDAEELAMHYLNKVKI-ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
E+ + + +V + + HR + SGG+ QR AIAR+L ++P +++ DEPTS+LD
Sbjct: 399 AQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458
Query: 186 EMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
+ ++L ++ L ++ + + ++H++ R + +V+ + QG++VEQ E F PQ
Sbjct: 459 TVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518
Query: 245 HERTQAFLS 253
E T+ L+
Sbjct: 519 QEYTRQLLA 527
Score = 114 bits (288), Expect = 2e-26
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 21/235 (8%)
Query: 35 DINLNVLRGERVIIAGPSGSGKSTLIRCINHI-----EKHQAGEIIINGIP-LNDDIRNI 88
D++L + GE + + G SGSGKS I + + +G+I +G L+ + +
Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTL 86
Query: 89 HEVRRD-VGMVFQH----FNLFSNL--SVLENCTLGPIWVRKMPKKDAEELAMHYLNKVK 141
VR + + M+FQ N L + E +L R M ++ A ++ L++V
Sbjct: 87 RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH----RGMRREAARGEILNCLDRVG 142
Query: 142 IADKSHRSSSL---LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
I + R + LSGGE QR IA +L +P++++ DEPT+ALD + ++L ++ EL
Sbjct: 143 IRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLREL 202
Query: 199 AEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
+E M ++ +TH + R++ADRV M G+ VEQN F+ P H TQ L
Sbjct: 203 QQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLL 257
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 117 bits (295), Expect = 3e-27
Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 17/240 (7%)
Query: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGE-RVIIAGPSGSGKSTLIRCINHIEKHQAGEI 74
+ ++ L+ + F AL D++L V GE RVII GP+G+GK+T++ I + G +
Sbjct: 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVII-GPNGAGKTTMMDVITGKTRPDEGSV 59
Query: 75 IINGIPLNDDIRNIHE---VRRDVGMVFQHFNLFSNLSVLENCTLG-----PIWVRKMPK 126
+ G D+ + E R +G FQ +F NL+V EN L ++ +
Sbjct: 60 LFGG----TDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFR 115
Query: 127 KDAEELAM--HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALD 184
AEE L + +AD++ R + LLS G+ Q I L PK++L DEP + +
Sbjct: 116 LSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT 175
Query: 185 PEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
E ++ +++ LA + ++V V H+M F R +AD+V + QG ++ + S ++ +P+
Sbjct: 176 DEETEKTAELLKSLAGK-HSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADPR 234
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 116 bits (293), Expect = 5e-27
Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 24/239 (10%)
Query: 15 NFAVEIKFLNKWYG-NFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGE 73
N + I ++ YG + L DI+L + + I G SGSGKSTL + + + ++GE
Sbjct: 471 NGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530
Query: 74 IIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP--------IW--VRK 123
I++NG L DI + H +R+ + + Q +FS S+LEN LG IW
Sbjct: 531 ILLNGFSL-KDI-DRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEI 587
Query: 124 MP-KKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSA 182
K D E + + Y ++ S +SGG+ QR A+AR+L K+++ DE TS
Sbjct: 588 AEIKDDIENMPLGYQTELSE------EGSSISGGQKQRIALARALLTDSKVLILDESTSN 641
Query: 183 LDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
LD K++++ ++ L ++ T++ V H + A+Q D+++ +D G+I+EQ S +E +
Sbjct: 642 LDTITEKKIVNNLLNLQDK--TIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGSHDELLD 697
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 116 bits (292), Expect = 7e-27
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 34/227 (14%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87
L+ ++L + GE+V + G +G GKSTL++ + Q GEI++NG P+ D
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD---- 406
Query: 88 IHE--VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV---KI 142
E +R+ + +V Q +LFS ++ +N L P E L L +V K+
Sbjct: 407 YSEAALRQAISVVSQRVHLFSA-TLRDNLLLA------APNASDEALI-EVLQQVGLEKL 458
Query: 143 ADKSHRSSS-------LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
+ ++ LSGGE +R IAR+L ++L DEPT LD E +++L+++
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
Query: 196 IELAEEGMTMVCVTHEMGFARQVA----DRVVFMDQGQIVEQNSPEE 238
E A + T++ +TH R DR+ MD GQI+EQ + +E
Sbjct: 519 AEHA-QNKTVLMITH-----RLTGLEQFDRICVMDNGQIIEQGTHQE 559
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 115 bits (290), Expect = 1e-26
Identities = 70/244 (28%), Positives = 129/244 (52%), Gaps = 24/244 (9%)
Query: 19 EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
+ L +G A+ ++NL V E V + GP+G+GK+T+ C+ K G I++ G
Sbjct: 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 79 IPLNDDIRNIHEVRRDVGMV--FQHFNLFSNLSVLENCTLG----------------PIW 120
+ H++ R +G+V FQH LF ++V+EN + P +
Sbjct: 67 QHIEG--LPGHQIAR-MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAF 123
Query: 121 VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT 180
R + +A + A +L +V + + ++R + L+ G+ +R IAR + QP+I++ DEP
Sbjct: 124 RRA--ESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPA 181
Query: 181 SALDPEMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEF 239
+ L+P+ KE+ +++ EL E +T++ + H+M ++DR+ ++QG + +PEE
Sbjct: 182 AGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
Query: 240 FNNP 243
NNP
Sbjct: 242 RNNP 245
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 115 bits (289), Expect = 1e-26
Identities = 69/222 (31%), Positives = 125/222 (56%), Gaps = 20/222 (9%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
L+D++ N+ +G+ I G +GSGKST+ + + IEK ++GEI N + DD N ++
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD--NFEKL 81
Query: 92 RRDVGMVFQH-FNLFSNLSV-------LENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA 143
R+ +G+VFQ+ N F V LEN +P + L +V +
Sbjct: 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLEN--------HAVPYDEMHRRVSEALKQVDML 133
Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-G 202
+++ + LSGG+ QR AIA L + P +++ DE TS LDP+ + +LD++ ++ E
Sbjct: 134 ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN 193
Query: 203 MTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
+T++ +TH++ A + AD V+ M++G + ++ +P E F++ +
Sbjct: 194 ITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAE 234
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 115 bits (288), Expect = 1e-26
Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 20/253 (7%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
A+++ L+ +Y L +++ + + + I GPSG GKST ++C+N + + + E+ +
Sbjct: 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVRV 65
Query: 77 NGIP--LNDDIR----NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAE 130
G N +I N++ +RR V MV NLF +SV +N G V PK + +
Sbjct: 66 EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEID 124
Query: 131 ELAMHYLNKVKIAD----KSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP- 185
++ L + D K H+S+ LSGG+ QR IAR+L ++PK++L DEP LDP
Sbjct: 125 DIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184
Query: 186 -EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQ-----GQIVEQNSPEEF 239
M E L + L E +TMV V+H + +++D F GQ+VE ++
Sbjct: 185 ASMKVESLIQSLRLRSE-LTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243
Query: 240 FNNPQHERTQAFL 252
FN+P RT+ ++
Sbjct: 244 FNSPHDSRTREYV 256
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 114 bits (288), Expect = 2e-26
Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 11/214 (5%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIR 86
YG AL DINL + GE +++ GPSG GK+TL+ I +Q G I ++G P+
Sbjct: 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-- 68
Query: 87 NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS 146
+ G+VFQ+ L +V +N G + + + K E+A L KV +
Sbjct: 69 -----GAERGVVFQNEGLLPWRNVQDNVAFG-LQLAGVEKMQRLEIAHQMLKKVGLEGAE 122
Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMTM 205
R LSGG+ QR IAR+L P+++L DEP ALD +++ ++++L E G +
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182
Query: 206 VCVTHEMGFARQVADRVVFM--DQGQIVEQNSPE 237
+ +TH++ A +A +V + G++VE+
Sbjct: 183 LLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 113 bits (284), Expect = 5e-26
Identities = 66/211 (31%), Positives = 112/211 (53%), Gaps = 10/211 (4%)
Query: 26 WYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDI 85
+ G AL+ + ++ GE + G SG+GKSTL++ I IE+ AG+I +G DI
Sbjct: 11 YLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG----HDI 66
Query: 86 -----RNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV 140
R + +RR +GM+FQ +L + +V +N + P+ + D L+KV
Sbjct: 67 TRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI-PLIIAGASGDDIRRRVSAALDKV 125
Query: 141 KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAE 200
+ DK+ LSGGE QR IAR++ +P ++L DEPT LD + + +L + E
Sbjct: 126 GLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR 185
Query: 201 EGMTMVCVTHEMGFARQVADRVVFMDQGQIV 231
G+T++ TH++G + + R++ + G +
Sbjct: 186 VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 112 bits (282), Expect = 9e-26
Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 30/244 (12%)
Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKS----TLIRCINHIEKHQAGEIIINGIPLNDDI 85
F A+ I+ +V +GE V I G SGSGKS ++ I++ + A ++ NG D+
Sbjct: 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNG----QDL 75
Query: 86 RNIHEVRR------DVGMVFQHFNLFSNLSVLENC-TLGPIWVRKMP------KKDAEEL 132
+ I E R +V M+FQ ++ L C T+G + + KK +
Sbjct: 76 QRISEKERRNLVGAEVAMIFQ-----DPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQR 130
Query: 133 AMHYLNKVKIADKSHRSSSL---LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVK 189
A+ LN+V I D + R LSGG SQR IA ++ +PK+++ DEPT+ALD +
Sbjct: 131 AIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQA 190
Query: 190 EVLDIMIELAE-EGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248
+++++++EL + E M +V +TH++ + A +++ M GQ+VE + F P+H T
Sbjct: 191 QIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYT 250
Query: 249 QAFL 252
QA L
Sbjct: 251 QALL 254
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 112 bits (281), Expect = 1e-25
Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 5/241 (2%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
V+++ ++ GN +I+L V RG+ I GPSG GK+TL+R I GEI+ +
Sbjct: 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFD 67
Query: 78 G--IPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMH 135
G IP R ++ VR+ + M+FQ LF++++V +N ++P M
Sbjct: 68 GENIPAMSRSR-LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMM 126
Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
L V + + S LSGG ++RAA+AR++ ++P +++FDEP DP + ++ ++
Sbjct: 127 KLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 186
Query: 196 IELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQ 254
EL G+T V V+H++ +AD + +IV S + NP R + FL
Sbjct: 187 SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDP-RVRQFLDG 245
Query: 255 I 255
I
Sbjct: 246 I 246
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 111 bits (281), Expect = 1e-25
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 18/204 (8%)
Query: 48 IAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIH---EVRRDVGMVFQHFNL 104
I G SG+GK++LI I+ + + Q G I++NG L D + I E RR +G VFQ L
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR-IGYVFQDARL 87
Query: 105 FSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSH---RSSSLLSGGESQRA 161
F + V N G M K + V + R LSGGE QR
Sbjct: 88 FPHYKVRGNLRYG------MAKSMVA----QFDKIVALLGIEPLLDRYPGSLSGGEKQRV 137
Query: 162 AIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVAD 220
AI R+L P+++L DEP ++LD +E+L + LA E + ++ V+H + ++AD
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLAD 197
Query: 221 RVVFMDQGQIVEQNSPEEFFNNPQ 244
RVV ++QG++ EE + +
Sbjct: 198 RVVVLEQGKVKAFGPLEEVWASSA 221
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 111 bits (279), Expect = 2e-25
Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 20/254 (7%)
Query: 2 KNTPINSKNPPKNNFAVEIKFLNKWYGNF-HALRDINLNVLRGERVIIAGPSGSGKSTLI 60
+ P ++ P AVE + + + N + D++ G+ V I GP+G+GK+TLI
Sbjct: 319 REEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLI 378
Query: 61 RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW 120
+ + G+I+I+GI +N R +R+ + VFQ LF N S+ EN LG
Sbjct: 379 NLLQRVYDPTVGQILIDGIDINTVTRE--SLRKSIATVFQDAGLF-NRSIRENIRLG--- 432
Query: 121 VRKMPKKDAE--ELAMHYLNKVKIADKSHRSSSL-------LSGGESQRAAIARSLCMQP 171
+ D E E A I +S+ +L LSGGE QR AIAR++
Sbjct: 433 --REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490
Query: 172 KIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIV 231
I++ DE TSALD E V + + L + T + + H + R AD V+F+DQG+++
Sbjct: 491 PILVLDEATSALDVETEARVKNAIDALRKNRTTFI-IAHRLSTVRN-ADLVLFLDQGRLI 548
Query: 232 EQNSPEEFFNNPQH 245
E+ S +E
Sbjct: 549 EKGSFQELIQKDGR 562
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 111 bits (279), Expect = 2e-25
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 47/226 (20%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLND-DIRNIHEV 91
L +++L++ GE V + G SG GKSTL R + +E G + G PL +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 92 RRDVGMVFQH----FNLFSNLSVLENCTLGPIWVRKMPKKDAEEL---AMHYLNKVKIAD 144
RRD+ MVFQ N P+K E+ + +L + A+
Sbjct: 88 RRDIQMVFQDSISAVN---------------------PRKTVREIIREPLRHLLSLDKAE 126
Query: 145 KSHRSSSLL-----------------SGGESQRAAIARSLCMQPKIMLFDEPTSALDPEM 187
+ R+S +L SGG+ QR +AR+L ++PK+++ DE S LD +
Sbjct: 127 RLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL 186
Query: 188 VKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVE 232
V+ ++ +L ++ G + +TH++ + RV+ MD GQIVE
Sbjct: 187 QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 111 bits (278), Expect = 2e-25
Identities = 75/214 (35%), Positives = 122/214 (57%), Gaps = 7/214 (3%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN--IH 89
AL DI+L V +G + G +GSGKSTL++ +N + + G++ + I ++ + I
Sbjct: 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80
Query: 90 EVRRDVGMVFQ--HFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSH 147
VR+ VG+VFQ LF +VL++ GP +PK+ AE++A L V +AD+
Sbjct: 81 PVRKKVGVVFQFPESQLFEE-TVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFW 138
Query: 148 RSSSL-LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMV 206
S LSGG+ +R AIA L M+P++++ DEPT+ LDP+ E++ + + + G T+V
Sbjct: 139 EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVV 198
Query: 207 CVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
VTH M AD V +++G I+ +P + F
Sbjct: 199 LVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 110 bits (276), Expect = 4e-25
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 13/210 (6%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLND-DIRNIHEV 91
L +++L++ GE V + G SG GKSTL R + +EK G + G L D +
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAF 86
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIW------VRKMPKKDAEELAMHYLNKVKI-AD 144
RRDV +VFQ S +V T+ I + + + + + L+ V + ++
Sbjct: 87 RRDVQLVFQD----SPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE 142
Query: 145 KSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGM 203
+ + LSGG+ QR IAR+L ++PK+++ DE S LD + +L+++ +L G
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
Query: 204 TMVCVTHEMGFARQVADRVVFMDQGQIVEQ 233
+ +TH++ + RV MD+GQIVE+
Sbjct: 203 AYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 110 bits (276), Expect = 5e-25
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 8/199 (4%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDI-----R 86
L++++L V GE V ++GPSG+GKSTL++ + +G I++ D+ R
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 87 NIHEVRR-DVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145
+ EVRR +G V Q + +S LE P+ R +P++ A A L ++ I ++
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALE-VVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 146 S-HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204
H + SGGE QR IAR I+L DEPT++LD + V++++ E G
Sbjct: 142 LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201
Query: 205 MVCVTHEMGFARQVADRVV 223
++ + H+ VADRV+
Sbjct: 202 LIGIFHDEEVRELVADRVM 220
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 109 bits (273), Expect = 1e-24
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Query: 38 LNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI------HEV 91
L+ +GE + + GP+G+GK+TL+R I + G + + G R+I HE
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPI-WVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150
D + H + + G I W+R+ P L +V + + + R
Sbjct: 61 AWDFPISVAH--------TVMSGRTGHIGWLRR-PCVADFAAVRDALRRVGLTELADRPV 111
Query: 151 SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTH 210
LSGG+ QR +AR+L +P ++L DEP + LD + + ++ IELA G ++ TH
Sbjct: 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 211 EMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
++ A DRVV ++ G+++ +P++ +
Sbjct: 172 DLAQAMATCDRVVLLN-GRVIADGTPQQLQD 201
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 109 bits (273), Expect = 1e-24
Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 16/235 (6%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLND-DIRNIHE 90
A+ + L + GE + + G SG GKST R I + K GE+ G L
Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95
Query: 91 VRRDVGMVFQHFNLFSNLSVLE-NCTLGPI-------WVRKMPKKDAEELAMHYLNKVKI 142
VR D+ M+FQ L+ L T+G I + K+ +++ ++ + KV +
Sbjct: 96 VRSDIQMIFQ-----DPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGL 150
Query: 143 -ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE 201
+ +R SGG+ QR IAR+L ++PK+++ DEP SALD + +V++++ +L E
Sbjct: 151 LPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210
Query: 202 -GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQI 255
G++++ + H++ + ++DRV+ M G VE + +E ++NP H T+A +S +
Sbjct: 211 MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAV 265
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 108 bits (272), Expect = 1e-24
Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 13/225 (5%)
Query: 18 VEIKFLNKWYGN----FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGE 73
VE+ L K G L + L V RGE + + G SGSGKSTL+ + ++ +GE
Sbjct: 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGE 66
Query: 74 IIINGIPL---NDDIRNIHEVR-RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA 129
+ + G PL +++ R ++R + VG VFQ F L L+ LEN L P +R + +
Sbjct: 67 VSLVGQPLHQMDEEARA--KLRAKHVGFVFQSFMLIPTLNALENVEL-PALLRGESSRQS 123
Query: 130 EELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVK 189
A L ++ + + + LSGGE QR A+AR+ +P ++ DEPT LD +
Sbjct: 124 RNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183
Query: 190 EVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQ 233
++ D++ L E G T++ VTH++ A + R+ ++ GQ+ E+
Sbjct: 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVN-GQLQEE 227
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 108 bits (270), Expect = 2e-24
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 5/224 (2%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+++ L+ +G+ L ++L+V G V + GP+G+GK+TL+R IN AG +++
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLG--PIWVRKMPKKDAEELAM- 134
G + + R V V Q +L V + +G P R + + A+
Sbjct: 64 GDDVEA--LSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE 121
Query: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
+ + +A + R + LSGGE QR +AR+L ++L DEPT++LD L++
Sbjct: 122 RAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL 181
Query: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+ L ++G T V H++ A + D +V + G++ P +
Sbjct: 182 VRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPAD 225
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 108 bits (270), Expect = 2e-24
Identities = 74/252 (29%), Positives = 132/252 (52%), Gaps = 19/252 (7%)
Query: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75
F + LN+ HA+ ++ ++ GE + + G SGSGKST R + + + Q GEII
Sbjct: 323 FPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382
Query: 76 INGIPLND-DIRNIHEVRRDVGMVFQHFNLFSNL--------SVLENCTLGPIWVRKM-P 125
NG ++ + +RRD+ +FQ + +++L S++E P+ V + P
Sbjct: 383 FNGQRIDTLSPGKLQALRRDIQFIFQ--DPYASLDPRQTVGDSIME-----PLRVHGLLP 435
Query: 126 KKDAEELAMHYLNKVKI-ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALD 184
K A L +V + + + R SGG+ QR IAR+L + PK+++ DE SALD
Sbjct: 436 GKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
Query: 185 PEMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
+ ++++++++L + G+ + ++H+M +++ RV M GQIVE F NP
Sbjct: 496 VSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENP 555
Query: 244 QHERTQAFLSQI 255
QH T+ ++ +
Sbjct: 556 QHPYTRKLMAAV 567
Score = 107 bits (269), Expect = 3e-24
Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 18/242 (7%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
A+R+++ ++ RGE + I G SGSGKS + + + G + + + L R + E+
Sbjct: 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90
Query: 92 RR------------DVGMVFQH--FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
D+ M+FQ +L +V E + +++A A L
Sbjct: 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRML 150
Query: 138 NKVKIADKS---HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
++V+I + R LSGG QR IA +L +P +++ DEPT+ALD + ++L +
Sbjct: 151 DQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210
Query: 195 MIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
+ L +E M ++ +TH+MG ++ADRV+ M QG+ VE S E+ F+ PQH T+A L+
Sbjct: 211 IKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLA 270
Query: 254 QI 255
+
Sbjct: 271 AV 272
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 108 bits (270), Expect = 2e-24
Identities = 65/220 (29%), Positives = 120/220 (54%), Gaps = 9/220 (4%)
Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIH 89
F AL + +L + + + G +GSGKST+I+ N + + G+ I+ + +++ I
Sbjct: 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83
Query: 90 EV---RRDVGMVFQ--HFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA- 143
EV R+++G+VFQ + LF ++ ++ GP+ + + K++A + L V++
Sbjct: 84 EVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPVNLGE-NKQEAYKKVPELLKLVQLPE 141
Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEG 202
D RS LSGG+ +R A+A + M ++ DEPT LDP+ ++ +++ L E
Sbjct: 142 DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK 201
Query: 203 MTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
++ VTH M ++AD V+ M +G+++ SP E F+N
Sbjct: 202 KRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 107 bits (270), Expect = 2e-24
Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 17/218 (7%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L+ + + GE V + GPSGSGKST+ + ++ + G+++++G+PL + H +
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ--YDHHYLH 554
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSH----- 147
R V +V Q LFS SV EN G + P ++ A I + +
Sbjct: 555 RQVALVGQEPVLFSG-SVRENIAYG---LTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610
Query: 148 --RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
S LSGG+ QR AIAR+L +P++++ DE TSALD E + + + + T+
Sbjct: 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESR---SRASRTV 667
Query: 206 VCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
+ + H + + AD+++ + +G +VE + ++ +
Sbjct: 668 LLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 107 bits (268), Expect = 3e-24
Identities = 60/216 (27%), Positives = 119/216 (55%), Gaps = 3/216 (1%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIR 86
YG AL +++L++ +GE V + G +G+GK+TL+ + + +G I+ +G + D +
Sbjct: 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITD-WQ 73
Query: 87 NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS 146
+R V +V + +FS ++V EN +G + + + E + Y ++ ++
Sbjct: 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAER--DQFQERIKWVYELFPRLHERR 131
Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMV 206
+ + +SGGE Q AI R+L QP+++L DEP+ L P +++++ D + +L E+GMT+
Sbjct: 132 IQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIF 191
Query: 207 CVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
V A ++ADR ++ G +V +++ + N
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 106 bits (265), Expect = 8e-24
Identities = 69/266 (25%), Positives = 128/266 (48%), Gaps = 56/266 (21%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ--AGEII 75
+E+K L K + L++I+ + GE + I G SG+GKS L+ + +++++ +G II
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 76 IN----------GIP-----------------------LNDDIRNIHEVRRDVGMVFQH- 101
+ P L+D +R +R+ + ++ Q
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLR--RRIRKRIAIMLQRT 118
Query: 102 FNLFSNLSVLENCTLGPIWVRKMPK-----KDAEELAMHYLNKVKIADKSHRSSSL---L 153
F L+ + +VL+N + + + K+A A+ + V++ SHR + + L
Sbjct: 119 FALYGDDTVLDNV------LEALEEIGYEGKEAVGRAVDLIEMVQL---SHRITHIARDL 169
Query: 154 SGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA-EEGMTMVCVTHEM 212
SGGE QR +AR L +P + L DEPT LDP+ K V + + E G++MV +H
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
Query: 213 GFARQVADRVVFMDQGQIVEQNSPEE 238
++D+ ++++ G+I E+ +P+E
Sbjct: 230 EVIEDLSDKAIWLENGEIKEEGTPDE 255
Score = 102 bits (256), Expect = 9e-23
Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 24/240 (10%)
Query: 18 VEIKFLNKWY-----GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG 72
++++ ++K Y G A+ +++L V GE I G SG+GK+TL + I + + +G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 73 EIIINGIPLNDDIRNIHE--------VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKM 124
E+ + + D+ ++ + +R +G++ Q ++L+ + +VL+N T I + ++
Sbjct: 340 EVNVR---VGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLT-EAIGL-EL 394
Query: 125 PKKDAEELAMHYLNKVKIADKSHRS-----SSLLSGGESQRAAIARSLCMQPKIMLFDEP 179
P + A A+ L V ++ LS GE R A+A+ L +P+I++ DEP
Sbjct: 395 PDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454
Query: 180 TSALDP-EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
T +DP V I+ E T + V+H+M F V DR M G+IV+ PEE
Sbjct: 455 TGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 105 bits (265), Expect = 9e-24
Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 13/219 (5%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIR 86
YG L D++L++ G+ + GP+G GKSTL++C + Q+G + + P++
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS 71
Query: 87 NIHEVRRDVGMVFQHFNLFSNLSVLENCTLG-----PIWVRKMPKKDAE--ELAMHYLNK 139
++ R + ++ QH ++V E G +W R + +D AM
Sbjct: 72 R--QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR-LSAEDNARVNQAMEQTRI 128
Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA 199
+AD R + LSGG+ QRA +A L ++L DEPT+ LD E++ +M EL
Sbjct: 129 NHLAD---RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 200 EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+G T+V V H++ A + D +V + G ++ Q +PEE
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 104 bits (261), Expect = 2e-23
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 9/229 (3%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
L K Y + D++L V GE V + GP+G+GK+T + I AG III+ +
Sbjct: 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID----D 64
Query: 83 DDIR--NIHE-VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRK-MPKKDAEELAMHYLN 138
+DI +H RR +G + Q ++F LSV +N + + +R + + E+ A +
Sbjct: 65 EDISLLPLHARARRGIGYLPQEASIFRRLSVYDN-LMAVLQIRDDLSAEQREDRANELME 123
Query: 139 KVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
+ I LSGGE +R IAR+L PK +L DEP + +DP V ++ I+ L
Sbjct: 124 EFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL 183
Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
+ G+ ++ H + V +R + QG ++ +P E + +R
Sbjct: 184 RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKR 232
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 104 bits (261), Expect = 3e-23
Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 33/238 (13%)
Query: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIE------KHQAGEIIINGIPLN-DDIR 86
++L + RG + + G SGSGKS + C + + AG ++++G P+ +R
Sbjct: 20 HGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77
Query: 87 NIHEVRRDVGMVFQH----FNLFSNLS--VLENCTLGPIWVRKMPKKDAEELAMHYLNKV 140
+ + Q+ FN + E C + K + L V
Sbjct: 78 GRK-----IATIMQNPRSAFNPLHTMHTHARETC-------LALGKPADDATLTAALEAV 125
Query: 141 KIADKSHRSSSL----LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMI 196
+ + + R L +SGG QR IA +L + ++ DEPT+ LD +LD++
Sbjct: 126 GLEN-AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLE 184
Query: 197 ELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLS 253
+ ++ + M+ VTH+MG ++AD V M G+IVEQ E FN P+H T++ +S
Sbjct: 185 SIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVS 242
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 103 bits (259), Expect = 4e-23
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 14/238 (5%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIR 86
YG + ++ + + G I GP+G GKSTL+R ++ + G + ++G + I+
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDG----EHIQ 72
Query: 87 NI--HEVRRDVGMVFQHFNLFSNLSVLENCTLG-----PIWVRKMPKKDAEELAMHYLNK 139
+ EV R +G++ Q+ +++V E G P++ R +K+ EE +
Sbjct: 73 HYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW--RKEDEEAVTKAMQA 130
Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL- 198
I + +S LSGG+ QRA IA L + IML DEPT+ LD ++L+++ EL
Sbjct: 131 TGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190
Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQII 256
E+G T+ V H++ A + A ++ + +G+IV Q +P+E ER II
Sbjct: 191 REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMII 248
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 103 bits (259), Expect = 4e-23
Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 19 EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
E K L+K +G A+ +I+L V + + GP+G+GKSTL++ I I + +GEII +G
Sbjct: 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61
Query: 79 IPLN-DDIRNIHEVRRDVGMVFQHFNLFSNLSVLEN----CTLGPIWVRKMPKKDAEELA 133
P D+ I G + + L+ NL+ EN TL +P +E+
Sbjct: 62 HPWTRKDLHKI-------GSLIESPPLYENLTARENLKVHTTL-----LGLPDSRIDEV- 108
Query: 134 MHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193
LN V + + + + S G QR IA +L PK+++ DEPT+ LDP ++E+ +
Sbjct: 109 ---LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165
Query: 194 IMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSP------EEFFNN 242
++ E+G+T++ +H + +Q+AD + + +G + Q E+ F
Sbjct: 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINKSENLEKLFVE 220
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 103 bits (257), Expect = 6e-23
Identities = 67/214 (31%), Positives = 127/214 (59%), Gaps = 6/214 (2%)
Query: 29 NFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI 88
+ + L ++ ++ +GE V I G +GSGKST R I+ + + G++ I+G L + N+
Sbjct: 19 DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE--NV 76
Query: 89 HEVRRDVGMVFQH-FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSH 147
+RR +GMVFQ+ N F +V ++ G + + +P+++ + L V + D
Sbjct: 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFG-MENQGIPREEMIKRVDEALLAVNMLDFKT 135
Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMV 206
R + LSGG+ QR A+A + ++P+I++ DE TS LDP +E++ ++ E+ E+ +T++
Sbjct: 136 REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVL 195
Query: 207 CVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
+TH++ A +DR++ M G+I+++ +P E F
Sbjct: 196 SITHDLDEAAS-SDRILVMKAGEIIKEAAPSELF 228
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 101 bits (253), Expect = 2e-22
Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 4/233 (1%)
Query: 6 INSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINH 65
S + A+++ ++K YG+ + ++ V GE + GP+G+GKST+ R I
Sbjct: 30 KASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89
Query: 66 IEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMP 125
+ AG+I + G+P+ R R +G+V Q NL +V EN + + M
Sbjct: 90 MTSPDAGKITVLGVPVPARAR---LARARIGVVPQFDNLDLEFTVRENLLVFGRYFG-MS 145
Query: 126 KKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
++ E + L ++ K+ S LSGG +R +AR+L P++++ DEPT+ LDP
Sbjct: 146 TREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+ + + L G T++ TH M A ++ DR+ ++ G+ + + P
Sbjct: 206 HARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 99 bits (250), Expect = 6e-22
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 36 INLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDV 95
+N + G+R+ + GPSG+GK++L+ + +Q G + INGI L + + R+ +
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRE--LDPESWRKHL 425
Query: 96 GMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA-EELAMHYLNKVKIADKSHR------ 148
V Q+ L ++ +N LG DA +E L +++
Sbjct: 426 SWVGQNPQLPHG-TLRDNVLLG--------NPDASDEQLQQALENAWVSEFLPLLPQGLD 476
Query: 149 -----SSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGM 203
++ LS G++QR A+AR+L +++L DEPT++LD + V+ + A
Sbjct: 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQ 535
Query: 204 TMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE------FFNNPQHERTQA 250
T + VTH++ Q D++ M GQIV+Q E F R +
Sbjct: 536 TTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 99.5 bits (248), Expect = 7e-22
Identities = 61/237 (25%), Positives = 119/237 (50%), Gaps = 10/237 (4%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
++ + L K YG +AL +++ +G V GP+G+GKST ++ I +G + +
Sbjct: 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
Query: 77 NGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTL-GPIWVRKMPKKDAEELAMH 135
G D ++N EV+R++G + +H L+ ++ V E I+ M + ++
Sbjct: 62 CGE---DVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY--GMKGQLLKQRVEE 116
Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
+ V + + H+ LS G QR +A++L PK+++ DEPT+ LDP + E+ +++
Sbjct: 117 MIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI 176
Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
+ ++ T++ TH M + DRV+ +++G+IV +E + Q
Sbjct: 177 KNIGKD-KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL---SAANKKQVIE 229
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 97.9 bits (244), Expect = 2e-21
Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 11/222 (4%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+ + + K +G HAL+ +NL V GE + G +G+GKSTL++ ++ I + G I IN
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 78 GIPLNDDIRNIHEVRRD--VGMVFQHFNLFSNLSVLENCTLGPIWVRK---MPKKDAEEL 132
I N + H++ +G+++Q ++ L+VLEN +G +K + D E+
Sbjct: 66 NINYN---KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122
Query: 133 ---AMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVK 189
A L +V + + LS Q IA++L + K+++ DEPTS+L + V
Sbjct: 123 RVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 190 EVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIV 231
+ IM +L +EG +V ++H++ R++ DR M G V
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
Score = 95.2 bits (237), Expect = 1e-20
Identities = 62/217 (28%), Positives = 113/217 (52%), Gaps = 25/217 (11%)
Query: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-----DDIRN- 87
RDI+ +V RGE + AG GSG++ L+ C+ ++K GEI +NG ++ D ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 88 ---IHEVRRDVGMVFQHFNLFSNLSV---LENCTLGPIW---VRKMPKKDAEELAMHYLN 138
I E RRD G F +F++ N+++ L++ ++ AE
Sbjct: 340 MAYITESRRDNGF-FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN------Q 392
Query: 139 KVKIADKSH---RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
+ +A K H ++ + LSGG Q+ I++ LC P++++FDEPT +D E+ +M
Sbjct: 393 RELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVE 232
+LA++G ++ V+ E+ V DR+ +G++ +
Sbjct: 453 RQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 95.6 bits (238), Expect = 1e-20
Identities = 65/251 (25%), Positives = 136/251 (54%), Gaps = 19/251 (7%)
Query: 18 VEIKFLNKWY----GNFH-----ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEK 68
+E++ L+K + G F A++ ++ + G+ + I G +GSGKSTL + + + +
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 69 HQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQ----HFNLFSNLSVLENCTLGPIWVRKM 124
+GE++I+ PL + + + M+FQ N +S + + L +
Sbjct: 65 PTSGELLIDDHPL--HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL--RLNTDL 120
Query: 125 PKKDAEELAMHYLNKVKI-ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSAL 183
+ E+ + L +V + D + +L+ G+ QR +AR+L ++PK+++ DE ++L
Sbjct: 121 EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL 180
Query: 184 DPEMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
D M +++++M+EL E+ G++ + VT +G + ++D+V+ M QG++VE+ S + +
Sbjct: 181 DMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
Query: 243 PQHERTQAFLS 253
P HE T+ ++
Sbjct: 241 PLHELTKRLIA 251
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 94.5 bits (235), Expect = 2e-20
Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 8/224 (3%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
++ + + K YG+ + ++ +V RGE + GP+G+GK+T +R + + AG I +
Sbjct: 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66
Query: 77 NGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVR--KMPKKDAEELAM 134
G P+ R+ VG+V Q NL + +V EN ++ R + A L
Sbjct: 67 CGEPVP---SRARHARQRVGVVPQFDNLDPDFTVRENLL---VFGRYFGLSAAAARALVP 120
Query: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
L K+ +K+ LSGG +R +AR+L P +++ DEPT+ LDP+ + +
Sbjct: 121 PLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER 180
Query: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+ L G T++ TH M A ++ DR+ +++G+ + + +P
Sbjct: 181 LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 94.2 bits (234), Expect = 3e-20
Identities = 63/224 (28%), Positives = 116/224 (51%), Gaps = 4/224 (1%)
Query: 14 NNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGE 73
+N A+++ ++K YG+ + D++ + RGE + GP+G+GKST+ R + + G+
Sbjct: 1 SNVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGK 60
Query: 74 IIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELA 133
I + G P+ R R +G+V Q NL +V EN + + M ++ E +
Sbjct: 61 ITVLGEPVPSRAR---LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG-MSTREIEAVI 116
Query: 134 MHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193
L ++ K+ +LLSGG +R +AR+L P++++ DEPT+ LDP + +
Sbjct: 117 PSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 176
Query: 194 IMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPE 237
+ L G T++ TH M A ++ DR+ ++ G+ + + P
Sbjct: 177 RLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 93.6 bits (233), Expect = 5e-20
Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 44/227 (19%)
Query: 43 GERVIIAGPSGSGKSTLI-----RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGM 97
GE + + G SG+GK+TL+ R ++ +G +++NG+P++ E+R
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKG--SGSVLLNGMPIDAK-----EMRAISAY 103
Query: 98 VFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV------------KIADK 145
V Q L+V E+ +MP++ ++ +++V +I
Sbjct: 104 VQQDDLFIPTLTVREHLMFQAHL--RMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP 161
Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
LSGGE +R A A L P ++ DEPTS LD M V+ ++ LA++G T+
Sbjct: 162 GRVKG--LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 206 VCVTH-------EMGFARQVADRVVFMDQGQIVEQNSPEE---FFNN 242
+C H E+ F D+++ M +G++ SP++ FF++
Sbjct: 220 ICTIHQPSSELFEL-F-----DKIILMAEGRVAYLGSPDQAVPFFSD 260
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 93.4 bits (232), Expect = 5e-20
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 9/221 (4%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQA--GEII 75
+E+K + K +G AL I+L V GE V + G +G+GKSTL++ ++ + H GEI
Sbjct: 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIY 61
Query: 76 INGIPLNDDIRNIHEV-RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL-- 132
+G PL NI + R + ++ Q L LSV EN LG + +
Sbjct: 62 WSGSPLK--ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL 119
Query: 133 -AMHYLNKVKI-ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE 190
A + L ++++ AD R GG+ Q IA++L Q ++++ DEP+S+L + +
Sbjct: 120 RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179
Query: 191 VLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIV 231
+LDI+ +L G+ V ++H++ + V D + + GQ V
Sbjct: 180 LLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
Score = 86.0 bits (213), Expect = 1e-17
Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 16/208 (7%)
Query: 35 DINLNVLRGERVIIAGPSGSGKSTLIRCI-NHIEKHQAGEIIINGIPLNDDIRN-IHEVR 92
D++ ++ RGE + +AG G+G++ L++ + G + ING P+ DIRN +R
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV--DIRNPAQAIR 335
Query: 93 RDVGMV---FQHFNLFSNLSVLENCTLGPI--WVRKMPKKDAEEL-----AMHYLNKVKI 142
+ MV + + L V +N TL + + KM A EL A+ L KVK
Sbjct: 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL-KVKT 394
Query: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEG 202
A L SGG Q+A +A+ L P++++ DEPT +D E+ ++ +LA+EG
Sbjct: 395 ASPFLPIGRL-SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453
Query: 203 MTMVCVTHEMGFARQVADRVVFMDQGQI 230
+ ++ V+ E+ ++DRV+ + +G++
Sbjct: 454 VAIIVVSSELAEVLGLSDRVLVIGEGKL 481
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 90.4 bits (225), Expect = 4e-19
Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 17/221 (7%)
Query: 19 EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQA--GEIII 76
E+K + K +G AL +++L V GE V + G +G+GKSTL++ ++ + H GEII
Sbjct: 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66
Query: 77 NGIPLNDDIRNIHEV-RRDVGMVFQHFNLFSNLSVLENCTLGPIWVR-------KMPKKD 128
G L NI + R + ++ Q L LSVLEN LG M +
Sbjct: 67 EGEELQ--ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR- 123
Query: 129 AEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMV 188
A++L L ++K+ L G+ Q IA++L Q ++++ DEPT++L
Sbjct: 124 AQKL----LAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESET 179
Query: 189 KEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQ 229
+LDI+ +L G+ + ++H++ + ++D + + G+
Sbjct: 180 AVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
Score = 83.4 bits (207), Expect = 5e-17
Identities = 57/212 (26%), Positives = 116/212 (54%), Gaps = 24/212 (11%)
Query: 35 DINLNVLRGERVIIAGPSGSGKSTLIRCI--NHIEKHQAGEIIINGIPLNDDIRNIHE-V 91
D++ ++ RGE + IAG G+G++ L++C+ + + + GEI I+G P+ IRN + +
Sbjct: 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE-GEIFIDGKPV--KIRNPQQAI 336
Query: 92 RRDVGMV---FQHFNLFSNLSVLENCTLGPI--WVRKMPKKDAEEL--AMHYLNKVKIAD 144
+ + MV + + + V +N TL + + DA EL + + ++K+
Sbjct: 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV-- 394
Query: 145 KSHRSSSL------LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
+++S LSGG Q+A +A+ L + PKI++ DEPT +D E+ ++ +L
Sbjct: 395 ---KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451
Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
++G+ ++ ++ E+ ++DRV+ M +G++
Sbjct: 452 VQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 89.9 bits (223), Expect = 6e-19
Identities = 65/228 (28%), Positives = 111/228 (48%), Gaps = 14/228 (6%)
Query: 27 YGNFH-ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDI 85
+ N H ALRD + V G + G +GSGKSTL + + + +G+I I G P +
Sbjct: 16 WRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL 75
Query: 86 RNIHEVRRDVGMVFQHFNLFSNLSVL-ENCTL----GPI-WVRKMPKKDAEELAMHYLNK 139
+ + V V Q + + VL E+ + G + W+R+ KK ++ L +
Sbjct: 76 Q-----KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRR-AKKRDRQIVTAALAR 129
Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA 199
V + + HR LSGG+ +R +AR++ Q +++L DEP + +D + ++ ++ EL
Sbjct: 130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 200 EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
+EG TM+ TH +G + D V M +G ++ E F E
Sbjct: 190 DEGKTMLVSTHNLGSVTEFCDYTV-MVKGTVLASGPTETTFTAENLEL 236
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 88.5 bits (220), Expect = 1e-18
Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 20/217 (9%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLND-DIRNIHE 90
ALR+IN + G+ V + G SGSGKST+ + GEI+++G L D + ++
Sbjct: 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL-- 415
Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTL--GPIWVRKMPKKDAE-ELAMHYLNKVK------ 141
R V +V Q+ +LF N ++ N + R+ ++ A AM ++NK+
Sbjct: 416 -RNQVALVSQNVHLF-NDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV 473
Query: 142 IADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE 201
I + + LLSGG+ QR AIAR+L I++ DE TSALD E + + + EL ++
Sbjct: 474 IGE----NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 528
Query: 202 GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
T + + H + + AD ++ ++ G+IVE+ + E
Sbjct: 529 NRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAE 564
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 86.2 bits (213), Expect = 7e-18
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 36/232 (15%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIR 86
Y + L+ +NL+ + G +G GKSTL ++ + + Q G ++ G PL+ R
Sbjct: 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR 70
Query: 87 NIHEVRRDVGMVFQH---------------FNLFSNLSVLENCTLGPIWVRKMPKKDAEE 131
+ +R+ V VFQ F+L NL V E E
Sbjct: 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSL-RNLGVPE-----------------AE 112
Query: 132 LAMHYLNKVKIADKS---HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMV 188
+ + + D H+ LS G+ +R AIA +L +Q + +L DEPT+ LDP
Sbjct: 113 ITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 189 KEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
+++ I+ + +G ++ +H++ +++D V + QGQI+ +P E F
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 86.2 bits (214), Expect = 8e-18
Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 28/212 (13%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
LR I+ + GE + I GPSGSGKSTL R I I +G + ++G L R
Sbjct: 334 LRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE--TFG 391
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSL 152
+ +G + Q LF +V EN R D E++ + K+A L
Sbjct: 392 KHIGYLPQDVELFPG-TVAENIA------RFGENADPEKI----IEAAKLAGVHELILRL 440
Query: 153 --------------LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
LSGG+ QR A+AR+L PK+++ DEP S LD E + + + + L
Sbjct: 441 PDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500
Query: 199 AEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
G+T+V +TH D+++ + G+I
Sbjct: 501 KARGITVVVITHRPS-LLGCVDKILVLQDGRI 531
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 86.2 bits (213), Expect = 8e-18
Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 17/207 (8%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL I+L + +G+ V I G +G GKSTL + + Q GEI+++G ++ D R+ +
Sbjct: 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRD--DY 414
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL---NKVKIADKSHR 148
R +F F+LF +L +GP + D + + L +KVKI D
Sbjct: 415 RDLFSAIFADFHLFDDL-------IGPDE-GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466
Query: 149 SSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVL--DIMIELAEEGMTMV 206
+++ LS G+ +R A+ + I+LFDE + DP K +++ +L +G T++
Sbjct: 467 TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAF-KRFFYEELLPDLKRQGKTII 525
Query: 207 CVTHEMGFARQVADRVVFMDQGQIVEQ 233
++H+ + ++AD+++ + G IV+
Sbjct: 526 IISHDDQYF-ELADQIIKLAAGCIVKD 551
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 86.2 bits (214), Expect = 8e-18
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 23/208 (11%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
++ INL + RGE + + G +GSGKSTL + + + Q+GEI+++G P+ +
Sbjct: 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV--TAEQPEDY 395
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAE-ELAMHYLNKVKIADK----S 146
R+ VF F+LF L LGP K A L +L ++K+A K
Sbjct: 396 RKLFSAVFTDFHLFDQL-------LGP------EGKPANPALVEKWLERLKMAHKLELED 442
Query: 147 HRSSSL-LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEV-LDIMIELAEEGMT 204
R S+L LS G+ +R A+ +L + I+L DE + DP +E ++ L E G T
Sbjct: 443 GRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKT 502
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVE 232
+ ++H+ + ADR++ M GQ+ E
Sbjct: 503 IFAISHDDHYFIH-ADRLLEMRNGQLSE 529
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 84.8 bits (210), Expect = 2e-17
Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 19/243 (7%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKST-------LIRCINHIEKHQAGEIIINGIP 80
G+ A+ D+N ++ GE + I G SGSGKS L+ I G NG
Sbjct: 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIG----GSATFNGRE 82
Query: 81 -LNDDIRNIHEVR-RDVGMVFQH--FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHY 136
LN + ++++R + M+FQ +L + V E + + M K +A E ++
Sbjct: 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM 142
Query: 137 LNKVKIADKSHRSSSL---LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193
L+ VK+ + R SGG QR IA +L +PK+++ DEPT+ALD + +++
Sbjct: 143 LDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT 202
Query: 194 IMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
++ EL E ++ +TH++G + D+V+ M G+ +E + + F P H + L
Sbjct: 203 LLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLL 262
Query: 253 SQI 255
+ +
Sbjct: 263 NAV 265
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 84.3 bits (209), Expect = 3e-17
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 8/208 (3%)
Query: 25 KWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDD 84
K Y L+ I+ + GE + G +G+GKSTL++ I I +G + I G P
Sbjct: 19 KQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR- 77
Query: 85 IRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKK-DAEELAMHYLNKVKIA 143
+ + + +V Q LF NLSV EN G +PK+ + + L +
Sbjct: 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFG------LPKRQASMQKMKQLLAALGCQ 131
Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGM 203
S+ L + Q I R L +I++ DEPT++L P + + + EL +G+
Sbjct: 132 LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191
Query: 204 TMVCVTHEMGFARQVADRVVFMDQGQIV 231
+V ++H++ RQ+ADR+ M G I
Sbjct: 192 GIVFISHKLPEIRQLADRISVMRDGTIA 219
Score = 70.9 bits (174), Expect = 3e-13
Identities = 56/211 (26%), Positives = 106/211 (50%), Gaps = 23/211 (10%)
Query: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-DDIRNIHEVR 92
R+I+L V GE + +AG G+G++ L + + + G I++NG +N R
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ----R 335
Query: 93 RDVGMVF-----QHFNLFSNLSVLEN-CTLG----PIWVRKMPKKDAEELAMHY--LN-K 139
G+V+ Q L+ + + N C L W++ P ++ L + LN K
Sbjct: 336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIK--PARENAVLERYRRALNIK 393
Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA 199
A+++ R+ LSGG Q+ IA+ L P++++ DEPT +D ++ ++ +A
Sbjct: 394 FNHAEQAART---LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA 450
Query: 200 EEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
+ + ++ ++ ++ Q+ADRV+ M QG+I
Sbjct: 451 AQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 83.4 bits (207), Expect = 5e-17
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 22/211 (10%)
Query: 40 VLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVF 99
V GE + + GP+G+GKSTL+ + + G I G PL + E+ R +
Sbjct: 19 VRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEA--WSAAELARHRAYLS 75
Query: 100 QHFNLFSNLSVLENCTLGPIWVRKMPKK---DAEELAMHYL-NKVKIADKSHRSSSLLSG 155
Q + V + TL P K +A A++ + + + DK RS + LSG
Sbjct: 76 QQQTPPFAMPVFQYLTL------HQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSG 129
Query: 156 GESQR---AA----IARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMI-ELAEEGMTMVC 207
GE QR AA + + +++L DEP ++LD LD ++ EL ++G+ +V
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA-ALDRLLSELCQQGIAVVM 188
Query: 208 VTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
+H++ + ADRV + QG+++ +E
Sbjct: 189 SSHDLNHTLRHADRVWLLKQGKLLASGRRDE 219
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 82.9 bits (205), Expect = 8e-17
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Query: 50 GPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLS 109
G +GSGKSTL++ + + GEI+++ PL + R V + Q ++
Sbjct: 44 GHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLES--WSSKAFARKVAYLPQQLPAAEGMT 101
Query: 110 VLENCTLG--PIWVRKMPKKDAE--ELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIAR 165
V E +G P W + + A E ++ V + +HR LSGGE QRA IA
Sbjct: 102 VRELVAIGRYP-WHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160
Query: 166 SLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVF 224
+ + +L DEPTSALD +VL ++ L++E G+T++ V H++ A + D +V
Sbjct: 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVA 220
Query: 225 MDQGQIVEQNSPEEFFNNP 243
+ G+++ Q +P E
Sbjct: 221 LRGGEMIAQGTPAELMRGE 239
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 82.5 bits (204), Expect = 1e-16
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI--HE 90
L +I+ ++ GE +I GPSG GKSTL++ + + +G ++ G +DI +
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG----EDISTLKPEI 78
Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKM---PKKDAE-----ELAMHYLNKVKI 142
R+ V Q LF + +V +N P +R P + L L K I
Sbjct: 79 YRQQVSYCAQTPTLFGD-TVYDNLIF-PWQIRNQQPDPAIFLDDLERFALPDTILTK-NI 135
Query: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE- 201
A+ LSGGE QR ++ R+L PK++L DE TSALD V +I+ E
Sbjct: 136 AE--------LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ 187
Query: 202 GMTMVCVTHE 211
+ ++ VTH+
Sbjct: 188 NIAVLWVTHD 197
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 82.1 bits (203), Expect = 1e-16
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 31/216 (14%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHE- 90
AL ++NL V + G +G+GKSTL++C+ I + +G I+ G ++ ++ E
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID--FKSSKEA 70
Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA---------------EELAMH 135
+ + MV Q NL SV++N +W+ + P K +EL +
Sbjct: 71 LENGISMVHQELNLVLQRSVMDN-----MWLGRYPTKGMFVDQDKMYRDTKAIFDELDID 125
Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
+ K+A LS + Q IA++ KI++ DEPTS+L + V + I+
Sbjct: 126 IDPRAKVAT--------LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII 177
Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIV 231
+L E G +V ++H+M Q+ D + + GQ +
Sbjct: 178 RKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
Score = 76.3 bits (188), Expect = 6e-15
Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 25/226 (11%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-----DDIR 86
++RD++ ++ +GE + IAG G+ ++ ++ + I + AG I ++G +N + I
Sbjct: 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN 322
Query: 87 N----IHEVRRDVGMVFQ---HFN-LFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLN 138
+ + E RR G+ FN L SN+ +N +G + +M K D + + ++
Sbjct: 323 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKN-KVGLLDNSRM-KSDTQWV----ID 376
Query: 139 KVKIADKSHRSS-SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE 197
+++ HR+ LSGG Q+ I R L QP+I++ DEPT +D E+ ++ E
Sbjct: 377 SMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436
Query: 198 LAEEGMTMVCVTHEMGFARQVADRVVFMDQGQ---IVE--QNSPEE 238
LA++ ++ ++ EM + DR++ M G IV+ + E
Sbjct: 437 LAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNE 482
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 80.0 bits (197), Expect = 5e-16
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
LR IN+ + GE+V I G +G+GKS+L + I + GEIII+G+ + +H++R
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK--IGLHDLR 1359
Query: 93 RDVGMVFQHFNLFS-----NLSVLENCTLGPIWVRKMPKKDAEELA-MHYLNKVKIADKS 146
+ ++ Q LFS NL + +W A ELA +
Sbjct: 1360 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWW-------ALELAHLKTFVSALPDKLD 1412
Query: 147 HRSS---SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGM 203
H + LS G+ Q +AR+L + KI++ DE T+A+D E ++ I E
Sbjct: 1413 HECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLE-TDNLIQSTIRTQFEDC 1471
Query: 204 TMVCVTHEMGFARQVAD--RVVFMDQGQIVEQNSPEEF 239
T++ + H + + D RV+ +D+G++ E +P
Sbjct: 1472 TVLTIAHRLN---TIMDYTRVIVLDKGEVAEFGAPSNL 1506
Score = 71.1 bits (174), Expect = 3e-13
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 30/217 (13%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCI----NHIEKHQAGEIIINGIPLNDDIRNI 88
L I ++ G V + G G GKS+L+ + + +E H + + +P I+N
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN- 712
Query: 89 HEVRRDVGMVFQH-FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSH 147
+R ++ +F N VLE C L P + +P D E+ +N
Sbjct: 713 DSLRENI--LFGKALNEKYYQQVLEACALLPD-LEILPSGDRTEIGEKGVN--------- 760
Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGM---- 203
LSGG+ QR ++AR++ I LFD+P SA+D + K + + +I EG+
Sbjct: 761 -----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI--GPEGVLKNK 813
Query: 204 TMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
T + VTH + + QV D ++ M G+I E S +E
Sbjct: 814 TRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 80.1 bits (198), Expect = 5e-16
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 12/181 (6%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
++ + GE + + GP+G GK+TL+R + + + +GE+ NG L + H
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 92 RRDVGMVFQHFN-LFSNLSVLENCTLGPIWVRKMPKKDAEELAMH-YLNKVKIADKSHRS 149
+G H L LS LEN W + + L V +
Sbjct: 75 ILYLG----HLPGLKPELSALENLHF---WAAIH---GGAQRTIEDALAAVGLTGFEDLP 124
Query: 150 SSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVT 209
++ LS G+ +R A+AR + + + DEPT+ALD V + ++ G ++ T
Sbjct: 125 AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184
Query: 210 H 210
H
Sbjct: 185 H 185
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 80.0 bits (198), Expect = 6e-16
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 50/225 (22%)
Query: 36 INLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIH------ 89
I+ +V GE V + G G+G+S L++ + + AG++ ++G P+ DIR+
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI--DIRSPRDAIRAG 329
Query: 90 -----EVRRDVGMVFQHFNLFSNLSVLEN-------------CTLGPIWVRKMPKKDAEE 131
E R+ G++ H SV +N C + W E
Sbjct: 330 IMLCPEDRKAEGIIPVH-------SVADNINISARRHHLRAGCLINNRWEA--------E 374
Query: 132 LAMHYLNKVKIADKSHRSS-SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE 190
A ++ + I S LSGG Q+A + R L K++L DEPT +D E
Sbjct: 375 NADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434
Query: 191 VLDIMIELAEEGMTMVCVTHE----MGFARQVADRVVFMDQGQIV 231
+ +++ ELA +G+ ++ V+ + +G VADR+V M +G+I
Sbjct: 435 IYNVIYELAAQGVAVLFVSSDLPEVLG----VADRIVVMREGRIA 475
Score = 67.2 bits (165), Expect = 4e-12
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 13/208 (6%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHE- 90
AL DI+ + G+ + G +G+GKSTL++ ++ + AG I+I+G + +
Sbjct: 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR--FASTTAA 76
Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTLGPI-----WVRKMPKKDAEELAMHYLNKVKIADK 145
+ V +++Q +L ++V EN LG + V + + A L + +
Sbjct: 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNR---RLLNYEAREQLEHLGVDID 133
Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
LS G+ Q IA++L +++ FDEPTS+L ++++ ++ EL EG +
Sbjct: 134 PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVI 193
Query: 206 VCVTHEMGFARQVADRV-VFMDQGQIVE 232
+ V+H M + D + VF D G+ V
Sbjct: 194 LYVSHRMEEIFALCDAITVFKD-GRYVA 220
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 79.7 bits (197), Expect = 7e-16
Identities = 60/220 (27%), Positives = 110/220 (50%), Gaps = 7/220 (3%)
Query: 19 EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
++K ++K + AL LNV G + + G +G+GKST+++ + I AG I+ G
Sbjct: 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG 65
Query: 79 IPLN-DDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEEL---AM 134
+ + ++ E +G++ Q NL L++ EN LG +V + + D +++ A
Sbjct: 66 KEVTFNGPKSSQEA--GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD 123
Query: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
L ++ + S + LS GE Q IA+ L + K+++ DEPT AL + + +
Sbjct: 124 KLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV 183
Query: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQ-IVEQ 233
+ EL +G +V ++H + ++ D V GQ I E+
Sbjct: 184 IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223
Score = 76.2 bits (188), Expect = 8e-15
Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 26/215 (12%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-----DDIRN 87
+ D++ + +GE + ++G G+G++ L++ + +G + ++G + D + N
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 88 ----IHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKK------DAEELAM-HY 136
I E R+ G+V +SV EN +L + R + E+ A+ +
Sbjct: 328 GIVYISEDRKRDGLVL-------GMSVKENMSLTAL--RYFSRAGGSLKHADEQQAVSDF 378
Query: 137 LNKVKIADKSHRSS-SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
+ I S + LLSGG Q+ AIAR L +PK+++ DEPT +D KE+ ++
Sbjct: 379 IRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLI 438
Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQI 230
+ EG++++ V+ EM ++DR++ M +G+I
Sbjct: 439 NQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 77.3 bits (191), Expect = 4e-15
Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQA--GEIIINGIPLNDDIRNIHE 90
L+ +NL V +GE I GP+GSGKSTL + I ++ G I+ G L + E
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE--LEPDE 73
Query: 91 -VRRDVGMVFQHFNLFSNLSVLE------NCTLGPIWVRKMPKKDAEELAMHYLNKVKIA 143
R + + FQ+ +S LE N + D +L L + +
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM- 132
Query: 144 DKSHRSSSL---LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAE 200
D+ + S+ SGGE +R I + ++PK+ + DE S LD + +K V + + L E
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192
Query: 201 EGMTMVCVTHEMGFARQVA-DRVVFMDQGQIVEQNSPE 237
+ + +TH + D V + G+IV+ E
Sbjct: 193 PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 77.0 bits (189), Expect = 5e-15
Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 13/204 (6%)
Query: 38 LNVLRGERVIIA--GPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDV 95
LN+ E I A G +G+GK+T + + + +G +++ G D N+ VR+ +
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGG---KDIETNLDAVRQSL 1005
Query: 96 GMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHY---LNKVKIADKSHRSSSL 152
GM QH LF +L+V E+ ++ ++ + EE + L + K + +
Sbjct: 1006 GMCPQHNILFHHLTVAEHI----LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 153 LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEM 212
LSGG ++ ++A + K+++ DEPTS +DP + + D++++ G T++ TH M
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHM 1120
Query: 213 GFARQVADRVVFMDQGQIVEQNSP 236
A + DR+ + QG++ +P
Sbjct: 1121 DEADLLGDRIAIISQGRLYCSGTP 1144
Score = 58.9 bits (142), Expect = 1e-09
Identities = 43/186 (23%), Positives = 93/186 (50%), Gaps = 4/186 (2%)
Query: 43 GERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHF 102
GE + G +G+GK+T + + +G+ + G + + NI +V +++G Q
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI---LTNISDVHQNMGYCPQFD 2021
Query: 103 NLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAA 162
+ L+ E+ L +R +P ++ E++A + + ++ + R + SGG ++ +
Sbjct: 2022 AIDDLLTGREHLYLYA-RLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLS 2080
Query: 163 IARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRV 222
A +L P ++L DEPT+ +DP+ + + + ++ + EG +V +H M + R+
Sbjct: 2081 TAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140
Query: 223 VFMDQG 228
M +G
Sbjct: 2141 AIMVKG 2146
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 76.8 bits (189), Expect = 6e-15
Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 33/253 (13%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ----AGEIIINGIPL-- 81
G A+ +++ + GE + G SGSGKS + + I + K A + + I L
Sbjct: 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLR 77
Query: 82 --NDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTL------------GPIWVR-KMPK 126
+ R + V +V M+FQ S L E G W R K
Sbjct: 78 LSPRERRKL--VGHNVSMIFQEPQ--SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK 133
Query: 127 KDAEELAMHYLNKVKIADKSHRSSSL---LSGGESQRAAIARSLCMQPKIMLFDEPTSAL 183
+ A EL L++V I D S L+ GE Q+ IA +L QP++++ DEPT+A+
Sbjct: 134 RRAIEL----LHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189
Query: 184 DPEMVKEVLDIMIELAE-EGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
+P ++ ++ L + T++ ++H++ Q AD++ + GQ VE +E
Sbjct: 190 EPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249
Query: 243 PQHERTQAFLSQI 255
P H TQA + I
Sbjct: 250 PHHPYTQALIRAI 262
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 75.5 bits (186), Expect = 1e-14
Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
AL ++N + G+ + I GP+GSGKSTL+ I G+I + IPL ++ +
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT-KLQ-LDSW 387
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELA-MH---------YLNKVK 141
R + +V Q LFS+ +V N LG + + LA +H Y +V
Sbjct: 388 RSRLAVVSQTPFLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446
Query: 142 IADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAE- 200
+LSGG+ QR +IAR+L + +I++ D+ SA+D + I+ L +
Sbjct: 447 ------ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQ---ILHNLRQW 497
Query: 201 -EGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
EG T++ H + A A ++ M G I ++ + ++
Sbjct: 498 GEGRTVIISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQQS 540
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 74.2 bits (182), Expect = 3e-14
Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 32/249 (12%)
Query: 6 INSKNPPKNNFAVEIKFLNKWYGNFH--------ALRDINLNVLRGERVIIAGPSGSGKS 57
I ++NPP A I N G F L DINL + G V I G +G GK+
Sbjct: 601 ILAQNPPLQPGAPAISIKN---GYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKT 657
Query: 58 TLIRC-INHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTL 116
+LI + + + ++I G V V Q +F N +V EN
Sbjct: 658 SLISAMLGELSHAETSSVVIRG---------------SVAYVPQVSWIF-NATVRENILF 701
Query: 117 GPIWVRKMPKKDAEELAM-HYLNKVKIADKSH--RSSSLLSGGESQRAAIARSLCMQPKI 173
G + + + + A+ H L+ + D + +SGG+ QR ++AR++ I
Sbjct: 702 GSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI 761
Query: 174 MLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQ 233
+FD+P SALD + +V D ++ +G T V VT+++ F + DR++ + +G I E+
Sbjct: 762 YIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEE 820
Query: 234 NSPEEFFNN 242
+ E +
Sbjct: 821 GTFAELSKS 829
Score = 59.2 bits (143), Expect = 1e-09
Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 46/232 (19%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN--IHE 90
L ++ V E+V + G +G+GKS+++ + I + + G I+I+ D+ + +
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC----DVAKFGLTD 1307
Query: 91 VRRDVGMVFQHFNLFS-----NLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145
+RR + ++ Q LFS N+ +W L + I D
Sbjct: 1308 LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW--------------EALERAHIKDV 1353
Query: 146 SHRSS-----SLLSGGES------QRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
R+ + GGE+ Q ++AR+L + KI++ DE T+++D D
Sbjct: 1354 IDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT-----DS 1408
Query: 195 MIE--LAEE--GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
+I+ + EE TM+ + H + D+++ + GQ++E +SP+E +
Sbjct: 1409 LIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSR 1459
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 74.0 bits (182), Expect = 3e-14
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 58/258 (22%)
Query: 10 NPP--KNNFAVEIKFLNKWYGNF--------HALRDINLNVLRGERVIIAGPSGSGKSTL 59
NPP A+ IK G F L +INL+V G V I G +G GK++L
Sbjct: 605 NPPLEPGLPAISIK-----NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSL 659
Query: 60 IRC-INHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP 118
I + + ++I G V V Q +F N +V +N G
Sbjct: 660 ISAMLGELPPRSDASVVIRG---------------TVAYVPQVSWIF-NATVRDNILFG- 702
Query: 119 IWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSL--------------LSGGESQRAAIA 164
+ Y + + H L +SGG+ QR ++A
Sbjct: 703 ----------SPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752
Query: 165 RSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVF 224
R++ + +FD+P SALD + ++V D I+ G T V VT+++ F QV DR++
Sbjct: 753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV-DRIIL 811
Query: 225 MDQGQIVEQNSPEEFFNN 242
+ +G I E+ + EE NN
Sbjct: 812 VHEGMIKEEGTYEELSNN 829
Score = 59.8 bits (145), Expect = 6e-10
Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 36/216 (16%)
Query: 44 ERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN--IHEVRRDVGMVFQH 101
E+V I G +G+GKS+++ + I + + G I+I+G DI + ++R+ +G++ Q
Sbjct: 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGC----DISKFGLMDLRKVLGIIPQA 1321
Query: 102 FNLFS-----NLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGG 156
LFS NL +W E L +L V + + + G
Sbjct: 1322 PVLFSGTVRFNLDPFNEHNDADLW---------ESLERAHLKDVIRRNSLGLDAEVSEAG 1372
Query: 157 ES----QRA--AIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE--LAEE--GMTMV 206
E+ QR ++AR+L + KI++ DE T+A+D V+ D +I+ + EE TM+
Sbjct: 1373 ENFSVGQRQLLSLARALLRRSKILVLDEATAAVD---VRT--DALIQKTIREEFKSCTML 1427
Query: 207 CVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
+ H + DR++ +D G++VE ++PE +N
Sbjct: 1428 IIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 72.6 bits (178), Expect = 1e-13
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 18/198 (9%)
Query: 43 GERVIIAGPSGSGKSTLIRCI-NHIEKHQ-AGEIIINGIPLNDDIRNIHEVRRDVGMVFQ 100
GE + + GPSGSGKSTL+ + I+ + G I+ N ++ + G V Q
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK------QILKRTGFVTQ 147
Query: 101 HFNLFSNLSVLEN---CTLG--PIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSL--L 153
L+ +L+V E C+L P + K K E + L K + +S + +
Sbjct: 148 DDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI 207
Query: 154 SGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMG 213
SGGE +R +IA + + P +++ DEPTS LD ++ + LA++G T+V H+
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267
Query: 214 FAR--QVADRVVFMDQGQ 229
+R Q+ D V+ + +G+
Sbjct: 268 -SRVYQMFDSVLVLSEGR 284
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 71.4 bits (176), Expect = 2e-13
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 31/192 (16%)
Query: 37 NLNVLRGERVI---------------IAGPSGSGKSTLIRCINHIEKHQAGEIIING--I 79
+L +RG RV+ + GP+GSGK+TL+R I + AG I ++G I
Sbjct: 7 DLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
Query: 80 PLNDDIRNIHEVRRDVGMVFQHFN-LFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLN 138
D H + G H N + L+V EN W E L
Sbjct: 67 DDPDVAEACHYL----G----HRNAMKPALTVAENLEF---WAAF--LGGEELDIAAALE 113
Query: 139 KVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL 198
V +A +H LS G+ +R A+AR L I + DEPT+ALD V +++
Sbjct: 114 AVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
Query: 199 AEEGMTMVCVTH 210
+G ++ TH
Sbjct: 174 LAQGGIVIAATH 185
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 70.7 bits (174), Expect = 4e-13
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 60/241 (24%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87
L+DI+L+ G ++ + G +G+GKSTL+R + ++K GE I+
Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR-----PAPGIK- 69
Query: 88 IHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAE--ELAMHYL-------- 137
VG + Q L +V EN G V ++ E++ +
Sbjct: 70 -------VGYLPQEPQLDPTKTVRENVEEG---VAEIKDALDRFNEISAKFAEPDADMDA 119
Query: 138 ---------------------NKVKIADKSHR------SSSLLSGGESQRAAIARSLCMQ 170
K++IA + R + LSGGE +R A+ R L +
Sbjct: 120 LLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSK 179
Query: 171 PKIMLFDEPTSALDPEMVKEVLDIMIE--LAEEGMTMVCVTHEMGFARQVADRVVFMDQG 228
P ++L DEPT+ LD E V +E L E T+V VTH+ F VA ++ +D+G
Sbjct: 180 PDMLLLDEPTNHLDAESVA-----WLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG 234
Query: 229 Q 229
+
Sbjct: 235 R 235
Score = 48.8 bits (117), Expect = 1e-06
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+E + L+K +G+ + D++ + G V + GP+G+GKSTL R I E+ +G I I
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI- 381
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQ-HFNLFSNLSVLENCTLG----PIWVRKMPKKDAEEL 132
+ ++ + V Q L N +V E + G + R++P +
Sbjct: 382 ----GETVK--------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR----- 424
Query: 133 AMHYLNK--VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE 190
Y+ + K +D+ + LSGGE R +A++L ++L DEPT+ LD E ++
Sbjct: 425 --AYVGRFNFKGSDQQKKVGQ-LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481
Query: 191 VLDIMIELAEEGMTMVCVTHEMGFARQVA 219
+ + ++E A G +V ++H+ F ++A
Sbjct: 482 LEEALLEFA--GCAVV-ISHDRWFLDRIA 507
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 69.0 bits (169), Expect = 1e-12
Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 32/223 (14%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV- 91
L++INL+V V + G +GSGKSTL + GEI ++G PL+ H V
Sbjct: 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS---SLSHSVL 413
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSS- 150
R+ V MV Q + ++ + L N TLG + +EE L V++A+ +
Sbjct: 414 RQGVAMVQQDPVVLAD-TFLANVTLG--------RDISEEQVWQALETVQLAELARSLPD 464
Query: 151 ----------SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP---EMVKEVLDIMIE 197
+ LS G+ Q A+AR L P+I++ DE T+ +D + +++ L
Sbjct: 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL----A 520
Query: 198 LAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
E T+V + H + + AD ++ + +GQ VEQ + ++
Sbjct: 521 AVREHTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLL 562
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 66.5 bits (163), Expect = 7e-12
Identities = 58/228 (25%), Positives = 112/228 (49%), Gaps = 28/228 (12%)
Query: 17 AVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
A+E++ L K + N +++NL + GER+ I G +G GK+TL+R + + +G +
Sbjct: 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW 378
Query: 77 NGIPLNDDIRNIHEVRRDVGMVFQ-HFNLFSN-LSVLENCTLGPIWVRKMPK-KDAEELA 133
+ N ++G Q H F N L++ + W+ + + D E+
Sbjct: 379 S--------ENA-----NIGYYAQDHAYDFENDLTLFD-------WMSQWRQEGDDEQAV 418
Query: 134 MHYLNKVKI-ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVL 192
L ++ D +S +LSGGE R + + +P +++ DEPT+ +D E + E L
Sbjct: 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI-ESL 477
Query: 193 DIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVE-QNSPEEF 239
++ +E E T++ V+H+ F +A R++ + +V+ + EE+
Sbjct: 478 NMALEKYEG--TLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523
Score = 33.3 bits (77), Expect = 0.059
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 160 RAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVA 219
R +A++L P I+L DEPT+ LD ++ + D+ L E TM+ ++H+ F V
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV---LNERNSTMIIISHDRHFLNSVC 219
Query: 220 DRVVFMDQGQI 230
+ +D G++
Sbjct: 220 THMADLDYGEL 230
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 66.0 bits (161), Expect = 9e-12
Identities = 68/243 (27%), Positives = 103/243 (42%), Gaps = 29/243 (11%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCI-----NHIEKHQA---GEIIINGIPLND- 83
LRD++L + G + G +G+GKSTL++ + A G++ +NG PL
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 84 DIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLG--PIWVR--KMPKKDAEELAMHYLNK 139
D + +R + Q FS E LG P R + +D E +A L
Sbjct: 77 DAPRLARLRAVLPQAAQPAFAFS---AREIVLLGRYPHARRAGALTHRDGE-IAWQALAL 132
Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCM---------QPKIMLFDEPTSALDPEMVKE 190
R + LSGGE R AR L P+ +L DEPT+ALD
Sbjct: 133 AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHR 192
Query: 191 VLDIMIELAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQH-ERT 248
+LD + LA + + ++ + H+ A + ADR+ + G IV +P + P H R
Sbjct: 193 LLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL-TPAHIARC 251
Query: 249 QAF 251
F
Sbjct: 252 YGF 254
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 63.3 bits (155), Expect = 7e-11
Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 15/181 (8%)
Query: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR 93
++ + GE V I GP+G+GK++L+R + + + AGE++ G P+ R E +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR---RQRDEYHQ 74
Query: 94 D---VGMVFQHFN-LFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRS 149
D +G H + + L+ LEN + +++ +E L +V +A
Sbjct: 75 DLLYLG----HQPGIKTELTALENLR----FYQRLHGPGDDEALWEALAQVGLAGFEDVP 126
Query: 150 SSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVT 209
LS G+ +R A+AR + + + DEP +A+D + V + ++ + AE+G ++ T
Sbjct: 127 VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT 186
Query: 210 H 210
H
Sbjct: 187 H 187
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 62.4 bits (152), Expect = 1e-10
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 21/212 (9%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIR 86
+G L D++L + G+ + + GP+G+GKSTL+R + + G I
Sbjct: 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK----------- 62
Query: 87 NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS 146
+ +G V Q L + L + T+ + K + L L +V+
Sbjct: 63 --RNGKLRIGYVPQKLYLDTTLPL----TVNRFLRLRPGTKKEDILPA--LKRVQAGHLI 114
Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTM 205
LSGGE+QR +AR+L +P++++ DEPT +D + D++ +L E +
Sbjct: 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAV 174
Query: 206 VCVTHEMGFARQVADRVVFMDQGQIVEQNSPE 237
+ V+H++ D V+ ++ I +PE
Sbjct: 175 LMVSHDLHLVMAKTDEVLCLNH-HICCSGTPE 205
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 61.2 bits (148), Expect = 3e-10
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 38/193 (19%)
Query: 71 AGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA- 129
+G+I+++G+ + D N+ ++R +V Q LF N+S+ EN G + K A
Sbjct: 1276 SGKILLDGVDICD--YNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDATREDVKRAC 1332
Query: 130 ---------EELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT 180
E L Y V KS LSGG+ QR AIAR+L +PKI+L DE T
Sbjct: 1333 KFAAIDEFIESLPNKYDTNVGPYGKS------LSGGQKQRIAIARALLREPKILLLDEAT 1386
Query: 181 SALDPEMVKEVLDIMIELAEEG-MTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEF 239
S+LD K + ++++ ++ T++ + H + ++ +D++V
Sbjct: 1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIV---------------V 1430
Query: 240 FNNPQHERTQAFL 252
FNNP +RT +F+
Sbjct: 1431 FNNP--DRTGSFV 1441
Score = 44.6 bits (105), Expect = 2e-05
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 149 SSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALD 184
++S LSGG+ QR +IAR++ PKI++ DE TS+LD
Sbjct: 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
Score = 41.2 bits (96), Expect = 3e-04
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR 93
+D+N + G+ G SG GKST+++ I + G+IIIN DI N+ R
Sbjct: 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-NLKWWRS 460
Query: 94 DVGMVFQHFNLFSN 107
+G+V Q LFSN
Sbjct: 461 KIGVVSQDPLLFSN 474
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se.
Length = 1490
Score = 60.7 bits (147), Expect = 3e-10
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L+D++ +V G+RV + G +GSGKSTL+ + + + GEI I+G+ N + R
Sbjct: 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNS--VTLQTWR 1291
Query: 93 RDVGMVFQHFNLFS-----NLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSH 147
+ G++ Q +FS NL E + IW K AEE+ + + + + DK
Sbjct: 1292 KAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIW------KVAEEVGLKSVIE-QFPDKLD 1344
Query: 148 ----RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
+LS G Q +ARS+ + KI+L DEP++ LDP
Sbjct: 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP 1386
Score = 45.7 bits (108), Expect = 1e-05
Identities = 46/198 (23%), Positives = 90/198 (45%), Gaps = 18/198 (9%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING-IPLNDDIRNIHEV 91
L++I+ + +G+ + +AG +GSGKS+L+ I + G+I +G I + I
Sbjct: 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPG 501
Query: 92 RRDVGMVFQ-HFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150
++F ++ + SV++ C L + P+KD L
Sbjct: 502 TIKDNIIFGLSYDEYRYTSVIKACQLEED-IALFPEKDKTVLG--------------EGG 546
Query: 151 SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTH 210
LSGG+ R ++AR++ + L D P + LD KE+ + + T + VT
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 211 EMGFARQVADRVVFMDQG 228
++ ++ AD+++ + +G
Sbjct: 607 KLEHLKK-ADKILLLHEG 623
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 60.2 bits (146), Expect = 6e-10
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 24/206 (11%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI-IINGIPLNDDI 85
YG+ L I LN++ G R+ + G +G+GKSTLI+ + +GEI + GI L
Sbjct: 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFA 381
Query: 86 RNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKI-AD 144
++ E R QH R P++ ++L YL D
Sbjct: 382 QHQLEFLRADESPLQHL------------------ARLAPQELEQKL-RDYLGGFGFQGD 422
Query: 145 KSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204
K + SGGE R +A + +P ++L DEPT+ LD +M + + + +I+ EG
Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-A 479
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQI 230
+V V+H+ R D + + G++
Sbjct: 480 LVVVSHDRHLLRSTTDDLYLVHDGKV 505
Score = 39.8 bits (93), Expect = 8e-04
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE--LAEEGMTM 205
R S SGG R +A++L + ++L DEPT+ LD + V I +E L T+
Sbjct: 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAV-----IWLEKWLKSYQGTL 199
Query: 206 VCVTHEMGFARQVADRVVFMDQGQIVE 232
+ ++H+ F + D+++ ++Q + E
Sbjct: 200 ILISHDRDFLDPIVDKIIHIEQQSLFE 226
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 58.4 bits (141), Expect = 2e-09
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 17/212 (8%)
Query: 22 FLNKWYGNFH-ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIP 80
F G +H AL +I+ V GE V I G +GSGKSTL I + G + I G
Sbjct: 28 FFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG-- 85
Query: 81 LNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV 140
++ L L+ +EN L + + + K+ +E+ +
Sbjct: 86 -------------SAALIAISSGLNGQLTGIENIELKGL-MMGLTKEKIKEIIPEIIEFA 131
Query: 141 KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAE 200
I ++ S G R A S+ + P I++ DE S D K+ LD M E E
Sbjct: 132 DIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE 191
Query: 201 EGMTMVCVTHEMGFARQVADRVVFMDQGQIVE 232
+G T+ ++H + + + +++ GQ+ E
Sbjct: 192 QGKTIFFISHSLSQVKSFCTKALWLHYGQVKE 223
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 58.3 bits (141), Expect = 2e-09
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
LR ++ + E+V I G +GSGKSTL+ + + GEI +NG + + E+R
Sbjct: 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA--YGLRELR 1383
Query: 93 RDVGMVFQHFNLF-----SNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSH 147
R M+ Q LF N+ + +W A EL + ++A +S
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWA-------ALELVGL---RERVASESE 1433
Query: 148 R-SSSLLSGGESQRAAIARSLCMQPKIM-------LFDEPTSALDPEMVKEVLDIMIELA 199
S +L GG + + +CM ++ L DE T+ +DP + +++ ++ A
Sbjct: 1434 GIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS-A 1492
Query: 200 EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQ 244
T++ + H + Q D+++ MD G + E SP E N Q
Sbjct: 1493 FSAYTVITIAHRLHTVAQY-DKIIVMDHGAVAEMGSPRELVMNRQ 1536
Score = 44.8 bits (106), Expect = 2e-05
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 153 LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEM 212
LSGG+ R ++AR++ + L D+P SALD + + V++ A G T V TH++
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 213 GFARQVADRVVFMDQGQIVEQNSPEEFFNNP 243
+ AD VV + G++ S +F
Sbjct: 843 HVVPR-ADYVVALGDGRVEFSGSSADFMRTS 872
Score = 38.6 bits (90), Expect = 0.002
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLI 60
LRD++++V RG+ ++ G +GSGKSTL+
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLL 703
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 57.6 bits (139), Expect = 3e-09
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 17/148 (11%)
Query: 43 GERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHF 102
GE +++ G +G+GK+TL+R + + ++G+I I+G R+ R + +
Sbjct: 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS-----RFMAYLGHLP 91
Query: 103 NLFSNLSVLEN----CTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGES 158
L ++LS LEN C L ++MP LA+ V +A LS G+
Sbjct: 92 GLKADLSTLENLHFLCGLHGRRAKQMP---GSALAI-----VGLAGYEDTLVRQLSAGQK 143
Query: 159 QRAAIARSLCMQPKIMLFDEPTSALDPE 186
+R A+AR + L DEP + LD E
Sbjct: 144 KRLALARLWLSPAPLWLLDEPYANLDLE 171
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 56.3 bits (137), Expect = 7e-09
Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 64/238 (26%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L+DI+L+ G ++ + G +G+GKSTL+R + ++K GE I+
Sbjct: 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR-----PAPGIK------ 71
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDA----EELAMHYL----------- 137
VG + Q L +V EN G V K A E+ Y
Sbjct: 72 --VGYLPQEPQLDPEKTVRENVEEG---VA--EVKAALDRFNEIYAAYAEPDADFDALAA 124
Query: 138 ------------------NKVKIADKSHR------SSSLLSGGESQRAAIARSLCMQPKI 173
++++IA + R + LSGGE +R A+ R L +P +
Sbjct: 125 EQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDM 184
Query: 174 MLFDEPTSALDPEMVKEVLDIMIE--LAEEGMTMVCVTHEMGFARQVADRVVFMDQGQ 229
+L DEPT+ LD E V +E L + T+V VTH+ F VA ++ +D+G+
Sbjct: 185 LLLDEPTNHLDAESVA-----WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGR 237
Score = 39.7 bits (94), Expect = 8e-04
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
+E + L+K +G+ + D++ ++ G V I GP+G+GKSTL + I E+ +G I I
Sbjct: 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
Score = 29.7 bits (68), Expect = 0.68
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 153 LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE 186
LSGGE R +A++L ++L DEPT+ LD E
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVE 479
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 56.5 bits (137), Expect = 7e-09
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 151 SLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGM-----TM 205
S LSGG ++AA+ R+L P ++L DEPT+ LD E IE E + ++
Sbjct: 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE--------TIEWLEGFLKTFQGSI 206
Query: 206 VCVTHEMGFARQVADRVVFMDQGQIV 231
+ ++H+ F R +A R+V +D+G++V
Sbjct: 207 IFISHDRSFIRNMATRIVDLDRGKLV 232
Score = 43.8 bits (104), Expect = 4e-05
Identities = 60/240 (25%), Positives = 90/240 (37%), Gaps = 96/240 (40%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTL--------------IRCINHIE-----KHQAG- 72
++D + V RG+++ + GP+G GK+TL I C +E +H+A
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAEL 394
Query: 73 ---------------EIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLG 117
E+++NG P R V Q F LF
Sbjct: 395 DPEKTVMDNLAEGKQEVMVNGRP------------RHVLGYLQDF-LFH----------- 430
Query: 118 PIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFD 177
PK+ AM VK LSGGE R +AR +++ D
Sbjct: 431 -------PKR-----AM---TPVKA----------LSGGERNRLLLARLFLKPSNLLILD 465
Query: 178 EPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVV-----FMDQGQIVE 232
EPT+ LD E + E+L+ + L T++ V+H+ RQ D V F G+I
Sbjct: 466 EPTNDLDVETL-ELLEEL--LDSYQGTVLLVSHD----RQFVDNTVTECWIFEGNGKIGR 518
Score = 32.6 bits (75), Expect = 0.11
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
L + L++ ERV + G +G+GKSTL++ +N G II
Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 55.0 bits (133), Expect = 2e-08
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 10/100 (10%)
Query: 148 RSSSLLSGGESQRAAIARSLCMQ---PKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204
+ ++ LSGGE+QR +A+ L + + + DEPT+ L + +K++L+++ L ++G T
Sbjct: 824 QPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNT 883
Query: 205 MVCVTHEMGFARQVADRVVFMDQ------GQIVEQNSPEE 238
+V + H + + AD ++ + G IV +PEE
Sbjct: 884 VVVIEHNLDVIKT-ADYIIDLGPEGGDGGGTIVASGTPEE 922
Score = 47.7 bits (114), Expect = 3e-06
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLF--DEPTSALDPEMVKEVLDIMIELAEEGMTM 205
R++ LSGGE+QR +A + +L+ DEP+ L + +++ + L + G T+
Sbjct: 483 RAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTV 542
Query: 206 VCVTHEMGFARQVADRVVFMDQ------GQIVEQNSPEEFFNNPQHERTQAFLSQ 254
+ V H+ R AD V+ + G++V +PEE NP T +LS
Sbjct: 543 IVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILANP-DSLTGQYLSG 595
Score = 41.2 bits (97), Expect = 3e-04
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 12 PKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
PK KFL + L++I +++ G I G SGSGKSTLI
Sbjct: 602 PKERRPGNGKFLTLKGARENNLKNITVSIPLGLFTCITGVSGSGKSTLI 650
Score = 40.8 bits (96), Expect = 4e-04
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTL 59
H L++I++ + R + V+I G SGSGKS+L
Sbjct: 10 HNLKNIDVEIPRDKLVVITGLSGSGKSSL 38
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 54.8 bits (133), Expect = 2e-08
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 50/222 (22%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVL-----RGERVIIAGPSGSGKSTLIRCINHIEKHQAG 72
VE L K G+F L V GE + I GP+G GK+T + + + K G
Sbjct: 341 VEYPDLTKKLGDFS------LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
Query: 73 EIIINGIPLNDDIRNI----HEVRRDVGMVFQHFNLFSNLSVLENCT--LGPIWVRKMPK 126
E+ + +++ I ++ D + L + T LG + +
Sbjct: 395 EV-------DPELK-ISYKPQYIKPDYDGTVEDL--------LRSITDDLGSSYYK---- 434
Query: 127 KDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE 186
E+ + L ++ DK+ + LSGGE QR AIA L + L DEP++ LD E
Sbjct: 435 ---SEI-IKPLQLERLLDKNVKD---LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487
Query: 187 ---MVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRV-VF 224
V + + + E E T + V H++ ++DR+ VF
Sbjct: 488 QRLAVAKAIRRIAE--EREATALVVDHDIYMIDYISDRLMVF 527
Score = 46.3 bits (111), Expect = 7e-06
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 40/198 (20%)
Query: 37 NLNVLRGERVI-IAGPSGSGKSTLIRCINHIEKHQAGEIIIN-GIPLNDDIRNIHEV-RR 93
L + + +V I GP+G GK+T ++ + +GE+I N G + + EV +R
Sbjct: 92 GLPIPKEGKVTGILGPNGIGKTTAVKIL-------SGELIPNLGDYEEEP--SWDEVLKR 142
Query: 94 DVGMVFQHFNLFSNLSVLENCTLGPI----WVRKMPK----------KDAEELAM--HYL 137
G Q N F L N + + +V +PK K +E +
Sbjct: 143 FRGTELQ--NYFKKLY---NGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVV 197
Query: 138 NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE---VLDI 194
++ + + R S LSGGE QR AIA +L FDEPTS LD +++ V +
Sbjct: 198 ERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD---IRQRLNVARL 254
Query: 195 MIELAEEGMTMVCVTHEM 212
+ ELA EG ++ V H++
Sbjct: 255 IRELA-EGKYVLVVEHDL 271
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 54.7 bits (131), Expect = 2e-08
Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 64/199 (32%)
Query: 42 RGERVIIAGPSGSGKSTLIRCI-NHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQ 100
GE ++I GP GSGK+TL R + + G I I+G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG---------------------- 38
Query: 101 HFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQR 160
E + + + + SG R
Sbjct: 39 ------------------------------EDILEEVLDQLLLIIVGGKKASGSGELRLR 68
Query: 161 AAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI------MIELAEEGMTMVCVTHEMGF 214
A+A + ++P +++ DE TS LD E +L + ++ +E+ +T++ T++
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 215 -----ARQVADRVVFMDQG 228
R+ DR + +
Sbjct: 129 LGPALLRRRFDRRIVLLLI 147
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 54.1 bits (130), Expect = 4e-08
Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 28/223 (12%)
Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIH 89
F AL DI+L G+ + + G +GSGKSTL I G++ NG
Sbjct: 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG----------- 85
Query: 90 EVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKM-----PKKDAEELAMHYLNKVKIAD 144
+V ++ L L+ +EN KM +K+ + + + ++ +
Sbjct: 86 ----EVSVIAISAGLSGQLTGIENIEF------KMLCMGFKRKEIKAMTPKIIEFSELGE 135
Query: 145 KSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204
++ S G + + ++ + P I++ DE S D ++ LD + E E+ T
Sbjct: 136 FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKT 195
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
+ V+H +G RQ ++ +++ G++ + ++ P++E
Sbjct: 196 IFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL--PKYEA 236
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 53.1 bits (128), Expect = 6e-08
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 52/223 (23%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCI---------NHI----EKHQAGE 73
Y + L +++ V GE I GP+G+GKSTL+ I N + + +GE
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE 329
Query: 74 IIINGIPLNDDIRNIHEVRRDVGMVFQ--HFNLFSNLSVLENCTLG----PIWVRKMPKK 127
I ++++ +G V H + + SV N L I + +
Sbjct: 330 -------------TIWDIKKHIGYVSSSLHLDYRVSTSVR-NVILSGFFDSIGIYQAVSD 375
Query: 128 DAEELAMHYLNKV----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSAL 183
++LA +L+ + + AD S LS G+ + A I R+L P +++ DEP L
Sbjct: 376 RQQKLAQQWLDILGIDKRTADAPFHS---LSWGQQRLALIVRALVKHPTLLILDEPLQGL 432
Query: 184 DP---EMVKEVLDIMIELAEEGMTMV---------CVTHEMGF 214
DP ++V+ +D++I E + V C+TH + F
Sbjct: 433 DPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEF 475
Score = 43.9 bits (104), Expect = 4e-05
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 153 LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCV 208
LS GE+++ + ++L +P +++ DEP LD +++ +++ L + G+T+V V
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 53.0 bits (127), Expect = 7e-08
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 12/178 (6%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L D+++ L I G +G GKS+L+R I I + +G I N +I NI +
Sbjct: 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYK----NCNINNIAKPY 71
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSL 152
+ + L ++V EN W + A+HY + D+ S
Sbjct: 72 --CTYIGHNLGLKLEMTVFENLKF---WSEIYNSAETLYAAIHYFKLHDLLDEKCYS--- 123
Query: 153 LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTH 210
LS G + AIAR + Q + L DE + L E + ++++ A G ++ +H
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 52.9 bits (127), Expect = 8e-08
Identities = 77/316 (24%), Positives = 123/316 (38%), Gaps = 91/316 (28%)
Query: 29 NFHALRDINLNVLRGERVIIAGPSGSGKSTLI---------------RCIN-HIEKHQAG 72
H L+D+ +++ G ++ G SGSGKS+LI C N I+
Sbjct: 607 TKHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAIS 666
Query: 73 EII-IN---------GIPLN-----DDIRNIHEVR---RDVGMVFQHFNLFSNLSVLENC 114
++ I IPL DD+R + + + +G+ HF+ + L C
Sbjct: 667 RLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAEC 726
Query: 115 T-LGPIW------------------------VRKMPKKDAEELAM-------HYLNKVKI 142
LG I VR K A+ L M +L++ I
Sbjct: 727 QGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSI 786
Query: 143 ADKSH-------------RSSSLLSGGESQRAAIARSLCM---QPKIMLFDEPTSALDPE 186
+K H R S LSGGE QR +A L +P + + DEPT+ L
Sbjct: 787 HEKIHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTH 846
Query: 187 MVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQ------GQIVEQNSPEEFF 240
+K ++ ++ L +G T+V + H M + VAD V+ + G ++ SPEE
Sbjct: 847 DIKALIYVLQSLTHQGHTVVIIEHNMHVVK-VADYVLELGPEGGNLGGYLLASCSPEELI 905
Query: 241 --NNPQHERTQAFLSQ 254
+ P + + +LS
Sbjct: 906 HLHTPTAKALRPYLSS 921
Score = 49.1 bits (117), Expect = 1e-06
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 148 RSSSLLSGGESQRAAIARSLCMQ-PKIM-LFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
R+ + LSGGE +R A+A+ L + I + DEP+ L P+ ++++++ +L ++G T+
Sbjct: 472 RALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTV 531
Query: 206 VCVTHEMGFARQVADRVVFMDQ------GQIVEQNSPEEFFNNPQHERTQAFLSQ 254
+ V H+ +ADR++ + G+++ SP EF T +L Q
Sbjct: 532 LLVEHDEQMI-SLADRIIDIGPGAGIFGGEVLFNGSPREFLAK-SDSLTAKYLRQ 584
Score = 32.9 bits (75), Expect = 0.075
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 2 KNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIR 61
+ P PK +I N + H L+ I+L++ R + GPS SGK +L+
Sbjct: 923 QELPYLPDPSPKPPVPADITIKNAYQ---HNLKHIDLSLPRNALTAVTGPSASGKHSLVF 979
Query: 62 CINHIEKHQAGEI 74
I + AG I
Sbjct: 980 DI----LYAAGNI 988
Score = 32.5 bits (74), Expect = 0.099
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 151 SLLSGGESQRAAIARSLCMQPK---IMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVC 207
S LS E IA+ L + PK + L DE ++LD + +L + L G +++
Sbjct: 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757
Query: 208 VTHEMGFARQVADRVVFMDQG 228
+ H+ +Q AD ++ M G
Sbjct: 1758 IDHDPALLKQ-ADYLIEMGPG 1777
Score = 30.2 bits (68), Expect = 0.48
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTL 59
L++I++ E V++ G SGSGKS+L
Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSL 42
Score = 27.5 bits (61), Expect = 3.5
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTLI 60
H ++++N++ V I+G SGSGK++L+
Sbjct: 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLL 1533
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 51.7 bits (124), Expect = 2e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 35 DINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI--IINGIPLNDDIRNIHEVR 92
++ V G ++I GP+G GKS+L R + GE+ + G + V
Sbjct: 470 SLSFEVPSGNHLLICGPNGCGKSSLFRIL--------GELWPVYGGRLTKPAKGKLFYVP 521
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKD-AEELAMHYLNKVKIADKSHRS-- 149
+ M L L + + P M ++ +++ L+ V++ R
Sbjct: 522 QRPYM---------TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGG 572
Query: 150 -------SSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE- 201
+LSGGE QR A+AR +P+ + DE TSA+ ++ M L E
Sbjct: 573 WSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE----GYMYRLCREF 628
Query: 202 GMTMVCVTH 210
G+T+ V+H
Sbjct: 629 GITLFSVSH 637
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 49.4 bits (118), Expect = 8e-07
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 18/214 (8%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ--AGEIIINGIPLNDDIRNIHE 90
LR +NL V GE I GP+GSGKSTL + E ++ G + G D+ +
Sbjct: 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG----KDLLELSP 72
Query: 91 VRR---DVGMVFQH---FNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKI-- 142
R + M FQ+ SN L+ R D + K+ +
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132
Query: 143 --ADKSHRSSSL-LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA 199
D RS ++ SGGE +R I + ++P++ + DE S LD + +K V D + L
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR 192
Query: 200 EEGMTMVCVTHEMGFARQVA-DRVVFMDQGQIVE 232
+ + + VTH + D V + QG+IV+
Sbjct: 193 DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 49.0 bits (117), Expect = 1e-06
Identities = 62/265 (23%), Positives = 99/265 (37%), Gaps = 55/265 (20%)
Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCI----NHIEKHQAGEIIINGIPLNDDI 85
F L+ ++ + GE ++ G GSG STL++ I + G I +GI ++I
Sbjct: 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITP-EEI 132
Query: 86 RNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKK-----DAEELAMHYLNKV 140
+ R DV + F +L+V E TL K P+ EE A H
Sbjct: 133 KK--HYRGDVVYNAETDVHFPHLTVGE--TLDFAARCKTPQNRPDGVSREEYAKH----- 183
Query: 141 KIADKSHRSSSL---------------LSGGESQRAAIARSLCMQPKIMLFDEPTSALDP 185
IAD + L +SGGE +R +IA + KI +D T LD
Sbjct: 184 -IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 186 EMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVA-------DRVVFMDQGQIVEQNSPE- 237
E + + A T V Q + D+V+ + +G + +
Sbjct: 243 ATALEFIRALKTSANILDTTPLVA-----IYQCSQDAYELFDKVIVLYEGYQIYFGPADK 297
Query: 238 --EFFNN-----PQHERTQAFLSQI 255
++F P + T FL+ +
Sbjct: 298 AKQYFEKMGFKCPDRQTTADFLTSL 322
Score = 48.2 bits (115), Expect = 2e-06
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 49/206 (23%)
Query: 50 GPSGSGKSTLIRCINH------IEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFN 103
G SG+GK+TL+ + I G+ ++NG PL+ + R +G V Q
Sbjct: 796 GASGAGKTTLLNVLAERVTTGVIT---GGDRLVNGRPLDSSFQ------RSIGYVQQ--- 843
Query: 104 LFSNLSVLENCTLGPIWVR---------KMPKKDAEELAMHYLNKV-KIADKSHRSSSL- 152
++ L VR + PK ++ M Y+ +V K+ + + ++
Sbjct: 844 --------QDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVV 895
Query: 153 ------LSGGESQRAAIARSLCMQPKIMLF-DEPTSALDPEMVKEVLDIMIELAEEGMTM 205
L+ + +R I L +PK++LF DEPTS LD + + +M +LA+ G +
Sbjct: 896 GVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAI 955
Query: 206 VCVTHE---MGFARQVADRVVFMDQG 228
+C H+ + F DR++ + +G
Sbjct: 956 LCTIHQPSAILFEE--FDRLLLLQKG 979
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 46.4 bits (110), Expect = 7e-06
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEG 202
+ +++ SGG R A+AR+L ++P ++L DEPT+ LD + VL + L +
Sbjct: 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD---LHAVLWLETYLLKWP 391
Query: 203 MTMVCVTHEMGFARQVADRVVFMDQGQ 229
T + V+H F V ++ + GQ
Sbjct: 392 KTFIVVSHAREFLNTVVTDILHL-HGQ 417
Score = 40.6 bits (95), Expect = 4e-04
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR 93
+++N + R+ + GP+G GKST+++ I +GE+ P + + +VR
Sbjct: 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLI-------SGELQ----PSSGTVFRSAKVR- 573
Query: 94 DVGMVFQH----FNLFSN-LSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHR 148
+ + QH +L SN L + C P ++L H + + + +
Sbjct: 574 -MAVFSQHHVDGLDLSSNPLLYMMRC---------FPGVPEQKLRAHLGSFGVTGNLALQ 623
Query: 149 SSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMV 206
LSGG+ R A A+ +P I+L DEP++ LD + V E L + L + G+ MV
Sbjct: 624 PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAV-EALIQGLVLFQGGVLMV 680
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 43.0 bits (101), Expect = 7e-05
Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVR 92
L+ I+ ++ G + + G +G+GK+TL++ I + + GEI+ + D+ +
Sbjct: 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCT---YQ 73
Query: 93 RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHR---S 149
+ + V + L++ ENC A+ ++ H
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLY---------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 150 SSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVT 209
LLS G+ ++ A+ R + K+ L DEP ALD + ++ + E +G ++ +
Sbjct: 125 CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184
Query: 210 HE 211
H+
Sbjct: 185 HQ 186
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 41.8 bits (98), Expect = 2e-04
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 153 LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE 211
LS + +R IA L P I+ DEPTS LD V+ + + G T+VC H+
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1078
Score = 30.2 bits (68), Expect = 0.53
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 153 LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAE--EGMTMVCVTH 210
+SGG+ +R + K + DE ++ LD +++ + ++ E ++ +
Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQ 396
Query: 211 EMGFARQVADRVVFMDQGQIVEQNSPE---EFFNN-----PQHERTQAFLSQI 255
+ D ++ + +GQIV Q + EFF + P+ + T FL ++
Sbjct: 397 PAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449
>gnl|CDD|150482 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 41.8 bits (99), Expect = 2e-04
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Query: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSA-----LDPEM------VKEV 191
D + S+ SG SQ A I +L ++L DE TSA D M KE
Sbjct: 312 KDTTDFSTEDASGSTSQAANIQEALEAGASLLLIDEDTSATNFMIRDERMQALVSKEKEP 371
Query: 192 LDIMIELAEE-----GMTMVCVTHEMGFARQVADRVVFMDQ 227
+ ++ G++ + V G VAD V+ MD
Sbjct: 372 ITPFVDRVRSLYDDLGVSTILVVGGSGDYLDVADTVIQMDD 412
>gnl|CDD|162351 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation.
Length = 343
Score = 40.8 bits (96), Expect = 4e-04
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 46 VIIAGPSGSGKST-LIRCINHIEKHQAGEIIINGIPLNDDIRNIHE------VRRDVGM 97
+++ GP+GSGKST L I++I K+ AG II + D I +H +R+VG+
Sbjct: 125 ILVTGPTGSGKSTTLASMIDYINKNAAGHIIT----IEDPIEYVHRNKRSLINQREVGL 179
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 40.4 bits (96), Expect = 4e-04
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 153 LSGGESQRAAIARSLCMQPK-----IMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVC 207
LSGGE+QR +A+ L + + + DEPT+ L E ++++L+++ L ++G T+V
Sbjct: 831 LSGGEAQRVKLAKEL--SKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888
Query: 208 VTHEMGFARQVADRVVFM-----DQ-GQIVEQNSPEEFFNNPQ-HERTQAFLSQI 255
+ H + + AD ++ + D G+IV +PEE + T +L +
Sbjct: 889 IEHNLDVIKT-ADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY--TGRYLKPV 940
Score = 38.5 bits (91), Expect = 0.002
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTL 59
H L++I+L++ R + V+ G SGSGKS+L
Sbjct: 14 HNLKNIDLDIPRDKLVVFTGLSGSGKSSL 42
Score = 34.7 bits (81), Expect = 0.025
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLI 60
L+++++ + G+ + G SGSGKSTLI
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLI 652
Score = 29.7 bits (68), Expect = 0.73
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 148 RSSSLLSGGESQR 160
RS+ LSGGE+QR
Sbjct: 485 RSAGTLSGGEAQR 497
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1042
Score = 37.6 bits (87), Expect = 0.003
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 140 VKIADKSHRSSSLLSGGESQRA------AIARSLCMQPKIML----FDEPTSALDPEMVK 189
S R S+ LSGGE+ A A+A L +L DE +LD + +
Sbjct: 938 ADAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLD 997
Query: 190 EVLDIMIELAEEGMTMVCVTHEMGFARQVADRVV 223
+ I+ + E + ++H F ++ R++
Sbjct: 998 RAIGILDAIREGSKMIGIISHVPEFRERIPHRIL 1031
Score = 28.0 bits (62), Expect = 2.4
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 33 LRDINLNVLRGERVI----------IAGPSGSGKSTLIRCI 63
L N +G I I G +G+GK+TL+ I
Sbjct: 6 LTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAI 46
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 35.8 bits (84), Expect = 0.012
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 42 RGERVIIAGPSGSGKSTLIRCI 63
RG ++++GPSG+GKSTL++ +
Sbjct: 4 RGLLIVLSGPSGAGKSTLVKAL 25
>gnl|CDD|163021 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 35.4 bits (82), Expect = 0.013
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 36 INLNVLRGERVIIAGPSGSGKSTLIR-CINHIEKHQ 70
+ L + + +II+G +GSGK+T ++ ++ I K +
Sbjct: 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE 172
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 35.4 bits (82), Expect = 0.014
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 29 NFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCI 63
AL + LR + ++AGPSG GKS+LI +
Sbjct: 162 GLEALLE----QLRNKITVVAGPSGVGKSSLINRL 192
>gnl|CDD|148176 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 35.3 bits (82), Expect = 0.016
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 46 VIIAGPSGSGKSTLIRCINHIEKHQAGEII-INGIPLNDDIRNIHE 90
V++ G G+GK+ L R + +E+ G ++ I+ D++R H
Sbjct: 15 VLLGGQPGAGKTELARAL--LEELGGGNVVRIDP----DELRTYHP 54
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 34.1 bits (79), Expect = 0.037
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 34 RDINLNVLRGERVI--IAGPSGSGKSTL 59
R L R I IAGP G+GKSTL
Sbjct: 22 RLAALQAEPQRRTIVGIAGPPGAGKSTL 49
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University).
Length = 1311
Score = 33.9 bits (77), Expect = 0.040
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 160 RAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-----GMTMVCVTHEMGF 214
R A+A + C+ I+ DEPT+ LD E ++ + ++E+ + ++ +TH+ F
Sbjct: 1213 RLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272
Score = 30.8 bits (69), Expect = 0.40
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 47 IIAGPSGSGKSTLIRCINHI 66
I+ GP+G+GK+T+I C+ +I
Sbjct: 32 ILVGPNGAGKTTIIECLKYI 51
>gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 33.9 bits (79), Expect = 0.044
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 46 VIIAGPSGSGKSTLIRC 62
VI+ G SG+GKS +R
Sbjct: 9 VIVTGLSGAGKSVALRA 25
>gnl|CDD|130788 TIGR01727, oligo_HPY, oligopeptide/dipeptide ABC transporter,
ATP-binding protein, C-terminal domain. This model
represents a domain found in the C-terminal regions of
oligopeptide ABC transporter ATP binding proteins,
immediately following the ATP-binding domain
(pfam00005). All characterized members appear able to be
involved in the transport of oligopeptides or
dipeptides. Some are important for sporulation or
antibiotic resistance. Some dipeptide transporters also
act on the heme precursor delta-aminolevulinic acid.
Length = 87
Score = 33.9 bits (78), Expect = 0.046
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 229 QIVEQNSPEEFFNNPQHERTQAFLSQI 255
+IVE EE F NP H T+A LS I
Sbjct: 1 KIVETGPAEEIFKNPLHPYTKALLSAI 27
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP.
Length = 180
Score = 33.6 bits (78), Expect = 0.054
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 46 VIIAGPSGSGKSTLIR 61
++I+GPSG GKSTL++
Sbjct: 4 IVISGPSGVGKSTLVK 19
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 33.1 bits (76), Expect = 0.069
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 138 NKVK---IADKSHRSSSLLSGGESQRAAI------ARSLCMQPKIMLF--DEPTSALDPE 186
NKVK + R + LSGGE R A+ A SL + I L DEPT LD E
Sbjct: 771 NKVKLFVVYQGKERPLTFLSGGE--RIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEE 828
Query: 187 MVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVF 224
++++DIM + ++ V+H+ + AD V+
Sbjct: 829 RRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAADYVIR 865
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain.
Length = 499
Score = 32.9 bits (75), Expect = 0.075
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHI 66
G HA R + + G +++ GP GSGK+ L + I
Sbjct: 196 GQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGI 234
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 32.9 bits (76), Expect = 0.076
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 41 LRGERVIIAGPSGSGKSTLI 60
L G+ ++AG SG GKSTL+
Sbjct: 162 LAGKVTVLAGQSGVGKSTLL 181
>gnl|CDD|148797 pfam07387, Seadorna_VP7, Seadornavirus VP7. This family consists
of several Seadornavirus specific VP7 proteins of around
305 residues in length. The function of this family is
unknown. However, it appears to be distantly related to
protein kinases.
Length = 308
Score = 32.9 bits (75), Expect = 0.085
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 51 PSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSV 110
P+ + + ++ I + + + + NG LN N+ + FQH N S L+
Sbjct: 31 PNATTHNNILGTIKYFTELMGLDYVSNGFKLN--WANVSD--------FQHLNGNSTLAK 80
Query: 111 LENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQ 170
+ +GP++++K+ Y NK ++ + H L + + I C +
Sbjct: 81 GK-TEIGPLFLKKIRSLPCCLNDALYFNKYRVFARMHGILRLKN-DNNYNYGIILEKCYK 138
Query: 171 PKIM 174
+I
Sbjct: 139 IRIN 142
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 32.4 bits (74), Expect = 0.12
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 46 VIIAGPSGSGKSTLIR 61
V+I G SGSGK+TL
Sbjct: 18 VLIDGRSGSGKTTLAG 33
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 31.7 bits (72), Expect = 0.21
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 14/46 (30%)
Query: 32 ALRDINLNVLRGERVI--------------IAGPSGSGKSTLIRCI 63
+LR NLN L+GE I I GP+G+GK+TL+ I
Sbjct: 5 SLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAI 50
>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 31.4 bits (72), Expect = 0.27
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 40 VLRGERVIIA--GPSGSGKSTLIR 61
L + IIA GP+G+GKST+ R
Sbjct: 279 FLMKRQPIIAIDGPAGAGKSTVTR 302
>gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
The Aquifex aeolicus ortholog is split into consecutive
open reading frames. Consequently, this model was build
in fragment mode (-f option).
Length = 245
Score = 30.8 bits (70), Expect = 0.32
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 40 VLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI 74
L+ + AG SG GKS+LI ++ K Q +I
Sbjct: 117 ALQNRISVFAGQSGVGKSSLINALDPSVKQQVNDI 151
>gnl|CDD|162298 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 30.8 bits (70), Expect = 0.38
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 47 IIAGPSGSGKSTLIRCINH------IEK---HQAGEI--IINGIPLNDDIR 86
++ G +GSGKST+ + H IE H A I + GIPLNDD R
Sbjct: 2 VLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDR 52
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 0.43
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 152 LLSGGE------SQRAAIARSLC--------MQPKIMLFDEPTSALDPEMVKEVLDIMIE 197
LSGGE S R AI R L + P ++ DEPT LD V +++D++
Sbjct: 781 QLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPP--LILDEPTVFLDSGHVSQLVDLVES 838
Query: 198 LAEEGM-TMVCVTHE 211
+ G+ +V V+H+
Sbjct: 839 MRRLGVEQIVVVSHD 853
Score = 26.5 bits (59), Expect = 6.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 29 NFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
NF D +L + G VI G +GSGKS+L+
Sbjct: 10 NFKCYADADLRLEDGVTVI-HGVNGSGKSSLL 40
>gnl|CDD|180114 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 30.5 bits (70), Expect = 0.46
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 48 IAGPSGSGKSTLIRCI-NHIEKHQAGEI 74
IAG SGSGK+T+ I + I
Sbjct: 11 IAGGSGSGKTTVASTIYEELGDESIAVI 38
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 30.3 bits (69), Expect = 0.47
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 45 RVIIAGPSGSGKSTLIRCIN----HIEKHQAGEIIINGI 79
++++ G SG GK+TL + +N +K QA E N I
Sbjct: 3 KIMLIGRSGCGKTTLTQALNGEELKYKKTQAIEFSDNMI 41
>gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 411
Score = 30.5 bits (70), Expect = 0.49
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Query: 34 RDIN--LNVLRGERV-IIAGPSGSGKSTLI 60
R IN L V RG+R+ I AG SG GKSTL+
Sbjct: 126 RAINGLLTVGRGQRMGIFAG-SGVGKSTLL 154
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 30.3 bits (69), Expect = 0.50
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 45 RVIIAGPSGSGKSTLIR 61
++I+ G GSGKSTL R
Sbjct: 3 KIILIGSGGSGKSTLAR 19
>gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional.
Length = 253
Score = 30.2 bits (69), Expect = 0.56
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 46 VIIAGPSGSGKSTL 59
V G +GSGK+TL
Sbjct: 5 VFFLGTAGSGKTTL 18
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 30.1 bits (69), Expect = 0.57
Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 2/15 (13%)
Query: 47 IIA--GPSGSGKSTL 59
+IA GP+GSGK T+
Sbjct: 6 VIAIDGPAGSGKGTV 20
>gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 29.9 bits (68), Expect = 0.60
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 30 FHALRDINLNVLRGERV-IIAGPSGSGKSTLIRCI 63
F++L D ++ R+ I+ G G+GKSTL++ I
Sbjct: 18 FYSLYDSIIDGAN--RIFILKGGPGTGKSTLMKKI 50
>gnl|CDD|178856 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
transferase; Reviewed.
Length = 307
Score = 29.7 bits (68), Expect = 0.67
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 46 VIIAGPSGSGKSTL-IRCINHIEKHQAGEII 75
++I GP+ SGK+ L I + K GEII
Sbjct: 7 IVIVGPTASGKTALAIE----LAKRLNGEII 33
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 30.0 bits (68), Expect = 0.70
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
Y NFH RD + G +I GP+GSGK+TL+
Sbjct: 423 YFNFHV-RDAKVL---GHTLIF-GPTGSGKTTLL 451
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 29.6 bits (67), Expect = 0.76
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 44 ERVI---IAGPSGSGKSTLIRCI 63
+R + +AG SG GK+T +R +
Sbjct: 6 DRPVLLGVAGDSGCGKTTFLRGL 28
>gnl|CDD|179218 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase;
Validated.
Length = 451
Score = 29.7 bits (68), Expect = 0.78
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 45 RVIIAGP-SGSGKSTL 59
++IA P SGSGK+T+
Sbjct: 5 ALVIAAPASGSGKTTV 20
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 29.4 bits (67), Expect = 0.95
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 45 RVIIAGPSGSGKSTLIR 61
+ I+GP GSGK+T+ R
Sbjct: 2 IITISGPPGSGKTTVAR 18
>gnl|CDD|178371 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 29.4 bits (66), Expect = 0.97
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 46 VIIAGPSGSGKSTLI 60
++I+GPSG GK TLI
Sbjct: 138 IVISGPSGVGKGTLI 152
>gnl|CDD|128763 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 29.4 bits (66), Expect = 0.99
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 40 VLRGER-VIIAGPSGSGKST--LIRCINHIEKHQAGEIII 76
+L G R VI+A P+GSGK+ L+ + +++ + +++
Sbjct: 20 LLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLV 59
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 29.2 bits (66), Expect = 1.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 47 IIAGPSGSGKSTLIR 61
++ GP GSGK+TL++
Sbjct: 115 LVIGPPGSGKTTLLQ 129
>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 29.0 bits (65), Expect = 1.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 36 INLNVLRGERVIIAGPSGSGKSTLIRCI 63
+NL+V +I GP+GSGKSTL+ I
Sbjct: 449 LNLHVDDVGHTLIFGPTGSGKSTLLALI 476
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 29.1 bits (66), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 43 GERVIIAGPSGSGKSTLI 60
G+ V + G SG GKSTL+
Sbjct: 195 GKTVALLGSSGVGKSTLV 212
>gnl|CDD|179010 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 29.0 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 31 HALRDINLNVLRGER---VIIAGPSGSGKSTLIR 61
ALR LRG R V+I GP G+GK+T ++
Sbjct: 44 FALRPA----LRGSRPLNVLIYGPPGTGKTTTVK 73
>gnl|CDD|184311 PRK13764, PRK13764, ATPase; Provisional.
Length = 602
Score = 29.0 bits (66), Expect = 1.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 42 RGERVIIAGPSGSGKSTL 59
R E ++IAG G+GKST
Sbjct: 256 RAEGILIAGAPGAGKSTF 273
>gnl|CDD|179089 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 29.0 bits (66), Expect = 1.2
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 46 VIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN----GIPLNDDIRNI 88
+ I G G+GKST I + + + Q +++ G PL + +R +
Sbjct: 6 ITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLREL 52
>gnl|CDD|131364 TIGR02311, HpaI, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase.
This model represents the aldolase which performs the
final step unique to the 4-hydroxyphenylacetic acid
catabolism pathway in which
2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into
pyruvate and succinate-semialdehyde. The gene for enzyme
is generally found adjacent to other genes for this
pathway organized into an operon.
Length = 249
Score = 29.0 bits (65), Expect = 1.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 184 DPEMVKEVLDI--------MIELAEEGMTMVCVTH 210
DP ++K++LDI MIE AE+ V T
Sbjct: 73 DPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 28.5 bits (64), Expect = 1.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 43 GERVIIAGPSGSGKSTLI 60
G + + GPSG+GK TL+
Sbjct: 1 GRLIYVVGPSGAGKDTLL 18
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 28.8 bits (65), Expect = 1.6
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 35 DINLNVLRGERV-IIAGPSGSGKSTLI 60
D L + RG+R+ I AG SG GKSTL+
Sbjct: 132 DTFLPLCRGQRLGIFAG-SGVGKSTLL 157
>gnl|CDD|177581 PHA03311, PHA03311, helicase-primase subunit BBLF4; Provisional.
Length = 828
Score = 28.7 bits (65), Expect = 1.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 47 IIAGPSGSGKSTLIRCINHI 66
+I G +G+GKST I+ +N
Sbjct: 75 LITGTAGAGKSTSIQTLNEN 94
>gnl|CDD|178433 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 28.6 bits (64), Expect = 1.6
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 42 RGERVI-IAGPSGSGKSTLIRCINHIEKHQAGEII 75
+ E+VI I+GP+G+GKS R + K GEII
Sbjct: 19 KKEKVIVISGPTGAGKS---RLALELAKRLNGEII 50
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 28.6 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 43 GERVIIAGPSGSGKSTLIRCI 63
V I GP+G GKS++ R +
Sbjct: 1 MIIVAIDGPAGVGKSSVSRAL 21
>gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 28.3 bits (64), Expect = 1.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 46 VIIAGPSGSGKSTLIR 61
VII GP+ GKST +R
Sbjct: 2 VIITGPNMGGKSTYLR 17
>gnl|CDD|149421 pfam08352, oligo_HPY, Oligopeptide/dipeptide transporter,
C-terminal region. This family features a region found
towards the C-terminus of oligopeptide ABC transporter
ATP binding proteins, immediately following the
ATP-binding domain (pfam00005). All characterized
members appear able to be involved in the transport of
oligopeptides or dipeptides. Some are important for
sporulation or antibiotic resistance. Some dipeptide
transporters also act on the heme precursor
delta-aminolevulinic acid.
Length = 64
Score = 28.5 bits (64), Expect = 1.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 231 VEQNSPEEFFNNPQHERTQAFLS 253
VE+ ++ NP H T+ L+
Sbjct: 1 VEEGPTDDILENPLHPYTRGLLN 23
>gnl|CDD|132510 TIGR03470, HpnH, hopanoid biosynthesis associated radical SAM
protein HpnH. The sequences represented by this model
are members of the radical SAM superfamily of enzymes
(pfam04055). These enzymes utilize an iron-sulfur redox
cluster and S-adenosylmethionine to carry out diverse
radical mediated reactions. The members of this clade
are frequently found in the same locus as
squalene-hopene cyclase (SHC, TIGR01507) and other genes
associated with the biosynthesis of hopanoid natural
products. The linkage between SHC and this radical SAM
enzyme is strong; one is nearly always observed in the
same genome where the other is found. A hopanoid
biosynthesis locus was described in Zymomonas mobilis
consisting of the genes HpnA-E and SHC (HpnF).
Continuing past SHC are found a phosphorylase enzyme
(ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM
enzyme (ZMO0874) which we name here HpnH. Granted, in Z.
mobilis, HpnH is in a convergent orientation with
respect to HpnA-G, but one gene beyond HpnH and running
in the same convergent direction is IspH (ZM0875,
4-hydroxy-3-methylbut-2-enyl diphosphate reductase), an
essential enzyme of IPP biosynthesis and therefore
essential for the biosynthesis of hopanoids. One of the
well-described hopanoid intermediates is
bacteriohopanetetrol. In the conversion from hopene
several reactions must occur in the side chain for which
a radical mechanism might be reasonable. These include
the four (presumably anaerobic) hydroxylations and a
methyl shift.
Length = 318
Score = 28.5 bits (64), Expect = 2.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 157 ESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
E+ R A AR + LF++ DPE V E D + +L +GMT+
Sbjct: 153 EAIREAKARGFRVTTNTTLFNDT----DPEEVAEFFDYLTDLGVDGMTI 197
>gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase.
Length = 422
Score = 28.4 bits (64), Expect = 2.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 38 LNVLRGERVIIAGPSGSGKSTLI 60
L G+R+ I +G GKSTL+
Sbjct: 140 LTCGEGQRIGIFAGAGVGKSTLL 162
>gnl|CDD|163010 TIGR02773, addB_Gpos, ATP-dependent nuclease subunit B. DNA
repair is accomplished by several different systems in
prokaryotes. Recombinational repair of double-stranded
DNA breaks involves the RecBCD pathway in some
lineages, and AddAB (also called RexAB) in other. The
AddA protein is conserved between the firmicutes and
the alphaproteobacteria, while the partner protein is
not. Nevertheless, the partner is designated AddB in
both systems. This model describes the AddB protein as
found Bacillus subtilis and related species. Although
the RexB protein of Streptococcus and Lactococcus is
considered to be orthologous, functionally equivalent,
and merely named differently, all members of this
protein family have a P-loop nucleotide binding motif
GxxGxGK[ST] at the N-terminus, unlike RexB proteins,
and a CxxCxxxxxC motif at the C-terminus, both of which
may be relevant to function.
Length = 1158
Score = 28.2 bits (63), Expect = 2.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 47 IIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDI 85
I G +G+GKST CI+ I K + I PL I
Sbjct: 5 FIYGRAGTGKSTF--CIDEI-KQK-----IKENPLGKPI 35
>gnl|CDD|150194 pfam09439, SRPRB, Signal recognition particle receptor beta
subunit. The beta subunit of the signal recognition
particle receptor (SRP) is a transmembrane GTPase which
anchors the alpha subunit to the endoplasmic reticulum
membrane.
Length = 181
Score = 28.1 bits (63), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 45 RVIIAGPSGSGKSTL 59
VIIAG SGK++L
Sbjct: 5 AVIIAGLCDSGKTSL 19
>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional.
Length = 319
Score = 28.2 bits (63), Expect = 2.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 46 VIIAGPSGSGKSTLIRCINH 65
+I++GP G+GK+T I + H
Sbjct: 37 LILSGPPGTGKTTSILALAH 56
>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model
represents UreG, a GTP hydrolase that acts in the
assembly of the nickel metallocenter of urease. It is
found only in urease-positive species, although some
urease-positive species (e.g. Bacillus subtilis) lack
this protein. A similar protein, hypB, is an accessory
protein for expression of hydrogenase, which also uses
nickel.
Length = 199
Score = 27.9 bits (62), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 45 RVIIAGPSGSGKSTLIRCI-NHIEKHQAGEIIINGIPLNDD 84
++ +AGP GSGK+ LI + + + +I N I +D
Sbjct: 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQED 43
>gnl|CDD|162405 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type
I. The noise level is set relative not to E4PD, but the
next closest outliers, the class II GAPDH's (found in
archaea, TIGR01546) and aspartate semialdehyde
dehydrogenase (ASADH, TIGR01296) both of which have
highest-scoring hits around -225 to the prior model.
Length = 327
Score = 28.0 bits (63), Expect = 2.6
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 44 ERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
++V+I+ PS T++ +NH +++ E II
Sbjct: 116 KKVLISAPSKGDAPTIVYGVNH-DEYDPEERII 147
>gnl|CDD|180683 PRK06762, PRK06762, hypothetical protein; Provisional.
Length = 166
Score = 28.0 bits (63), Expect = 2.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 46 VIIAGPSGSGKSTLIR 61
+II G SGSGK+T+ +
Sbjct: 5 IIIRGNSGSGKTTIAK 20
>gnl|CDD|183503 PRK12402, PRK12402, replication factor C small subunit 2;
Reviewed.
Length = 337
Score = 28.0 bits (63), Expect = 2.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 47 IIAGPSGSGKSTLIRC 62
++ GP GSGK+ +R
Sbjct: 40 LVQGPPGSGKTAAVRA 55
>gnl|CDD|163076 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6
family in eukaryotes. Several members may be found in
genome and interact with each other.
Length = 365
Score = 27.6 bits (62), Expect = 2.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 32 ALRDINLNVLRGER---VIIAGPSGSGKSTLIR 61
ALR I LRG R V I G +G+GK+ + +
Sbjct: 30 ALRPI----LRGSRPSNVFIYGKTGTGKTAVTK 58
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 27.5 bits (61), Expect = 3.0
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 33 LRDIN--LNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGI 79
+ IN L + +G+RV + SG GKS L + I ++ ++++ G+
Sbjct: 143 VNAINGLLTIGKGQRVGLMAGSGVGKSVL---LGMITRYTQADVVVVGL 188
>gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 27.7 bits (62), Expect = 3.1
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 47 IIAGPSGSGKSTLIRCI-NHIEKH 69
I+ GP G GK+TL R I NH H
Sbjct: 56 ILYGPPGVGKTTLARIIANHTRAH 79
>gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated.
Length = 226
Score = 27.7 bits (62), Expect = 3.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 46 VIIAGPSGSGKSTL 59
V++AGP GSGK+ L
Sbjct: 47 VVLAGPVGSGKTHL 60
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 27.6 bits (61), Expect = 3.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 153 LSGGESQ------RAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
LSGGE R A+A+ L +++ DEPT+ LD + + DI+
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII 850
>gnl|CDD|178349 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 27.5 bits (61), Expect = 3.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 42 RGERVIIAGPSGSGKSTL 59
+ + V++ GP+GSGKS L
Sbjct: 21 KAKVVVVMGPTGSGKSKL 38
>gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 27.6 bits (62), Expect = 3.4
Identities = 8/21 (38%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 44 ERVI-IAGPSGSGKSTLIRCI 63
++++ + GP G GKS+L+ C+
Sbjct: 78 KQILYLLGPVGGGKSSLVECL 98
>gnl|CDD|180192 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1135
Score = 27.4 bits (62), Expect = 3.7
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 58 TLI-RCINHIEKHQAGEIIINGIPLND 83
T+I + I+K + ++ + IPL+D
Sbjct: 560 TIIDDALKLIKKRRGIDVDLEAIPLDD 586
>gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit. A number of
genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other
genes involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 27.3 bits (61), Expect = 3.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 46 VIIAGPSGSGKSTLIR 61
V+I G G+ KST R
Sbjct: 28 VLIRGEKGTAKSTAAR 43
>gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family
are known or believed to be adenylate kinase. However,
some members accept other nucleotide triphosphates as
donors, may be unable to use ATP, and may fail to
complement adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason.
Length = 210
Score = 27.6 bits (62), Expect = 3.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 45 RVIIAGPSGSGKST 58
R+++ GP GSGK T
Sbjct: 1 RLVLLGPPGSGKGT 14
>gnl|CDD|184738 PRK14551, rnhB, ribonuclease HII; Provisional.
Length = 212
Score = 27.4 bits (61), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 197 ELAEEGMTMVCV---THEMGFARQVADRV 222
+A +G+T +C FAR+VADRV
Sbjct: 90 GVATDGITGLCDAGDVDAGRFARRVADRV 118
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 27.4 bits (61), Expect = 4.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 38 LNVLRGERVIIAGPSGSGKSTLIRCI 63
L V +G+RV I SG GKSTL+ I
Sbjct: 153 LTVGKGQRVGIFAGSGVGKSTLMGMI 178
>gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional.
Length = 469
Score = 27.4 bits (61), Expect = 4.2
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 19/54 (35%)
Query: 20 IKFLNKWYG-------NFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHI 66
I+FL +W G HAL V + G G+GKS + + I
Sbjct: 187 IRFLQQWCGYCLTGDTREHAL------------VFVFGGGGNGKSVFLNVLAGI 228
>gnl|CDD|161745 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes.
Length = 155
Score = 27.3 bits (61), Expect = 4.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 48 IAGPSGSGKSTLI 60
I GP SGK+TLI
Sbjct: 4 IVGPKNSGKTTLI 16
>gnl|CDD|182459 PRK10436, PRK10436, hypothetical protein; Provisional.
Length = 462
Score = 27.2 bits (61), Expect = 4.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 46 VIIAGPSGSGKS-TLIRCINHIEKHQAG--------EIIINGI 79
+++ GP+GSGK+ TL + + Q EI + GI
Sbjct: 221 ILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGI 263
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 27.1 bits (60), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 45 RVIIAGPSGSGKSTLIRCI 63
RV++ G SG GKS+L+ I
Sbjct: 23 RVLVVGDSGVGKSSLVHLI 41
>gnl|CDD|184917 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 27.1 bits (60), Expect = 5.0
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 21 KFLNKWYGNFHALRDINLNVLRGERV----IIAGPSGSGKSTLIR-------CINHIEKH 69
KF + G +R I N ++ +RV I AGP G+GK+T+ R C+N E
Sbjct: 13 KFFKEVIGQEIVVR-ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGE 71
Query: 70 QAGE 73
G+
Sbjct: 72 PCGK 75
>gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1 and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains
(pfam00036), that may bind calcium. They are also
larger than classical small GTPases. It has been
proposed that they are involved in mitochondrial
homeostasis and apoptosis.
Length = 118
Score = 27.0 bits (60), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 45 RVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDI 85
+V++ G GSGKS+L+ + E I G L D
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDT 41
>gnl|CDD|179724 PRK04040, PRK04040, adenylate kinase; Provisional.
Length = 188
Score = 26.8 bits (60), Expect = 5.3
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 43 GERVIIAGPSGSGKSTLIR 61
+ V++ G G GK+T++
Sbjct: 2 MKVVVVTGVPGVGKTTVLN 20
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors.
Length = 217
Score = 27.0 bits (60), Expect = 5.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 48 IAGPSGSGKSTLIR 61
I GPSG+GKST+ +
Sbjct: 7 IDGPSGAGKSTVAK 20
>gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional.
Length = 259
Score = 27.0 bits (60), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 40 VLRGERVIIAGPSGSGKSTL 59
+ R E +++ GPSG GK+ L
Sbjct: 99 IERNENIVLLGPSGVGKTHL 118
>gnl|CDD|150847 pfam10236, DAP3, Mitochondrial ribosomal death-associated protein
3. This is a family of conserved proteins which were
originally described as death-associated-protein-3
(DAP-3). The proteins carry a P-loop DNA-binding motif,
and induce apoptosis. DAP3 has been shown to be a
pro-apoptotic factor in the mitochondrial matrix and to
be crucial for mitochondrial biogenesis and so has also
been designated as MRP-S29 (mitochondrial ribosomal
protein subunit 29).
Length = 274
Score = 26.8 bits (60), Expect = 5.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 44 ERVIIAGPSGSGKSTL 59
R ++ G GSGKS L
Sbjct: 24 VRFVLTGERGSGKSVL 39
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 26.9 bits (60), Expect = 5.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 46 VIIAGPSGSGKST 58
VI+AG +GSGK+T
Sbjct: 92 VIVAGETGSGKTT 104
>gnl|CDD|182097 PRK09825, idnK, D-gluconate kinase; Provisional.
Length = 176
Score = 26.9 bits (59), Expect = 6.0
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Query: 43 GERVIIAGPSGSGKSTLIRC----------INHIEKHQAGEI--IINGIPLNDDIR 86
GE I+ G SGSGKS LI I+ + H A I + GIPL D+ R
Sbjct: 3 GESYILMGVSGSGKS-LIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDR 57
>gnl|CDD|181463 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 26.8 bits (60), Expect = 6.0
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 188 VKEVLDIMIELAEEGMTMVCV--TH 210
+K++ ++++ AEE VC+ TH
Sbjct: 126 LKKLRGVLLKKAEEHKNTVCIGRTH 150
>gnl|CDD|151020 pfam10443, RNA12, RNA12 protein. This family includes RNA12 from
S. cerevisiae. That protein contains an RRM domain.
This region is C-terminal to that and includes a P-loop
motif suggesting this region binds to NTP. The RNA12
proteins is involved in pre-rRNA maturation.
Length = 428
Score = 26.5 bits (59), Expect = 6.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 46 VIIAGPSGSGKSTLI 60
+++ GP GSGK L+
Sbjct: 20 IVVQGPRGSGKRELV 34
>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 26.6 bits (59), Expect = 6.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 46 VIIAGPSGSGKSTLIRCI 63
+ I+GP GSGK+T+ + +
Sbjct: 3 ITISGPPGSGKTTVAKIL 20
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 26.7 bits (59), Expect = 6.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 43 GERVIIAGPSGSGKSTLI 60
G+R+ I P+G GKSTL+
Sbjct: 163 GQRMGIFAPAGVGKSTLM 180
>gnl|CDD|132060 TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM
locus subfamily. Members of this protein are marked as
probable ATPases by the nucleotide binding P-loop motif
GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of
helicases, and extensive homology to ATPases of
MSHA-type pilus systems and to GspA proteins associated
with type II protein secretion systems.
Length = 269
Score = 26.6 bits (59), Expect = 7.0
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 46 VIIAGPSGSGKSTLIRCINHIEKHQAGEIII 76
++I G G+GK+TLIR N +++ ++
Sbjct: 46 ILITGEVGAGKTTLIR--NLLKRLDQERVVA 74
>gnl|CDD|172383 PRK13862, PRK13862, putative crown gall tumor protein VirC2;
Provisional.
Length = 201
Score = 26.4 bits (58), Expect = 7.0
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 153 LSGGESQRAAIARSLCMQPKIMLF-DEPTSALDPEMVKE 190
LS GE++R A AR + P+ L PE E
Sbjct: 8 LSVGEARRLAAARPEIVHPEPTLASQNLALPQLPERADE 46
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins.
Length = 440
Score = 26.6 bits (59), Expect = 7.4
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 34 RDIN--LNVLRGERVIIAGPSGSGKSTLIRCI 63
R I+ L V +G+R+ I SG GKSTL+ I
Sbjct: 152 RSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMI 183
>gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 413
Score = 26.5 bits (59), Expect = 7.4
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 38 LNVLRGERV-IIAGPSGSGKSTLI 60
L + +G+RV I AG SG GKSTL+
Sbjct: 132 LTIGKGQRVGIFAG-SGVGKSTLL 154
>gnl|CDD|162188 TIGR01070, mutS1, DNA mismatch repair protein MutS.
Length = 840
Score = 26.3 bits (58), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 35 DINLNVLRGERVIIAGPSGSGKSTLIR 61
D+ + R ++I GP+ GKST +R
Sbjct: 585 DLEMAHNR-RMLLITGPNMGGKSTYMR 610
>gnl|CDD|131577 TIGR02525, plasmid_TraJ, plasmid transfer ATPase TraJ. Members of
this protein family are predicted ATPases associated
with plasmid transfer loci in bacteria. This family is
most similar to the DotB ATPase of a type-IV
secretion-like system of obligate intracellular
pathogens Legionella pneumophila and Coxiella burnetii
(TIGR02524).
Length = 372
Score = 26.3 bits (58), Expect = 8.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 47 IIAGPSGSGKSTLIRCI 63
+I G +GSGKSTL I
Sbjct: 153 LICGETGSGKSTLAASI 169
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 26.2 bits (59), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 46 VIIAGPSGSGKSTLIRCI 63
+I+ GP G+GK+TL R I
Sbjct: 39 MILWGPPGTGKTTLARII 56
>gnl|CDD|184357 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 26.4 bits (59), Expect = 8.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 48 IAGPSGSGKSTL 59
+ GP+G+GKS L
Sbjct: 446 VVGPTGAGKSVL 457
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 139
Score = 26.1 bits (58), Expect = 8.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 46 VIIAGPSGSGKSTLIR 61
V++ GP G+GKS L
Sbjct: 2 VLLVGPPGTGKSELAE 17
>gnl|CDD|184251 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 26.0 bits (58), Expect = 8.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 45 RVIIAGPSGSGKSTLI 60
++ I GP G GK+TL+
Sbjct: 2 KIGITGPPGVGKTTLV 17
>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated.
Length = 351
Score = 26.2 bits (58), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 46 VIIAGPSGSGKSTL-IRCINHIEKH 69
++ GP G GK+TL NHI H
Sbjct: 48 LLFEGPEGIGKATLAFHLANHILSH 72
>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus. This family consists of the
C-terminal region of several eukaryotic and archaeal
RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin
or TIP49b) proteins. The N-terminal domain contains the
pfam00004 domain. In zebrafish, the liebeskummer (lik)
mutation, causes development of hyperplastic embryonic
hearts. lik encodes Reptin, a component of a
DNA-stimulated ATPase complex. Beta-catenin and Pontin,
a DNA-stimulated ATPase that is often part of complexes
with Reptin, are in the same genetic pathways. The
Reptin/Pontin ratio serves to regulate heart growth
during development, at least in part via the
beta-catenin pathway. TBP-interacting protein 49
(TIP49) was originally identified as a TBP-binding
protein, and two related proteins are encoded by
individual genes, tip49a and b. Although the function
of this gene family has not been elucidated, they are
supposed to play a critical role in nuclear events
because they interact with various kinds of nuclear
factors and have DNA helicase activities.TIP49a has
been suggested to act as an autoantigen in some
patients with autoimmune diseases.
Length = 395
Score = 26.1 bits (58), Expect = 8.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 43 GERVIIAGPSGSGKSTL 59
G V+IAGP G+GK+ L
Sbjct: 50 GRAVLIAGPPGTGKTAL 66
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 26.1 bits (58), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 45 RVIIAGPSGSGKSTL 59
RV I G + SGK+T
Sbjct: 24 RVAIDGITASGKTTF 38
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 26.3 bits (59), Expect = 9.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 41 LRGERVIIAGPSGSGKST 58
L+G +++ G G+GKST
Sbjct: 2 LKGPNIVLIGFMGAGKST 19
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 26.0 bits (57), Expect = 9.2
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 35 DINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPL 81
D L V RG+R+ I +G GKS+L+ I A E +N I L
Sbjct: 156 DGMLTVARGQRIGIFAGAGVGKSSLLGMI----ARNAEEADVNVIAL 198
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. Mutations have
also been found that do not phosphorylate the
periplasmic binding proteins, yet still allow
transport. The ATPase activity of this protein seems to
be necessary, however.
Length = 300
Score = 25.9 bits (57), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 42 RGERVIIAGPSGSGKSTLI 60
RV I G G+GKSTL+
Sbjct: 33 NAHRVGITGTPGAGKSTLL 51
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 26.2 bits (58), Expect = 9.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 45 RVIIAGPSGSGKSTLIR 61
++ I G SGSGKSTL R
Sbjct: 2 KIAIIGYSGSGKSTLAR 18
>gnl|CDD|164791 PHA00350, PHA00350, putative assembly protein.
Length = 399
Score = 26.0 bits (57), Expect = 9.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 47 IIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIP 80
I G GS KS + I + G +I IP
Sbjct: 5 AIVGRPGSYKSYEAVVYHIIPALKDGRKVITNIP 38
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,252,499
Number of extensions: 269881
Number of successful extensions: 1780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1312
Number of HSP's successfully gapped: 432
Length of query: 257
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 166
Effective length of database: 4,028,145
Effective search space: 668672070
Effective search space used: 668672070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)