BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780173|ref|YP_003064586.1| ABC transporter related
protein [Candidatus Liberibacter asiaticus str. psy62]
         (257 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 257

 Score =  535 bits (1377), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
           MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI
Sbjct: 1   MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60

Query: 61  RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW 120
           RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW
Sbjct: 61  RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW 120

Query: 121 VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT 180
           VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT
Sbjct: 121 VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT 180

Query: 181 SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
           SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF
Sbjct: 181 SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240

Query: 241 NNPQHERTQAFLSQIIY 257
           NNPQHERTQAFLSQIIY
Sbjct: 241 NNPQHERTQAFLSQIIY 257


>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 254

 Score =  140 bits (354), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 12/237 (5%)

Query: 26  WYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ-----AGEIIINGIP 80
            YG   AL DINL + +     + GPSG GKST +RC+N + +        GEII++G  
Sbjct: 15  CYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN 74

Query: 81  LNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP-IWVRKMPKKDAEELAMHYLNK 139
           +     ++  +R  VGMVFQ  N F   S+ +N   GP I      K D +++    L K
Sbjct: 75  IYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133

Query: 140 V----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
                ++ D+    +SLLSGG+ QR  IAR+L + P+++L DEP SALDP     V +++
Sbjct: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193

Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
            EL  E +T+V VTH M  A +V+ R      G +VE++  ++ F  P  +RTQ ++
Sbjct: 194 HEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score =  114 bits (286), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 18  VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
           +++  L   Y N     D  +N  + ER++I GPSG+GKSTL+  +   +    G I +N
Sbjct: 2   IKLDHLIYCYDNLKMQFDFQVN--KAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN 59

Query: 78  GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
           G    +  R+    +R + ++FQ  NLFS+L+V +N  LG     ++      ++    L
Sbjct: 60  G---QNHTRS-SPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVK-QML 114

Query: 138 NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE 197
            KV + D  +R  S +SGG+ QR A+AR L  Q  I+L DEP +  DP +  E+L ++ +
Sbjct: 115 EKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174

Query: 198 LAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248
           + +E  +T++ ++H +  + Q+A R + +  GQIV    P+   N    E T
Sbjct: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPEST 226


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score =  106 bits (265), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)

Query: 23  LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
           L K  GN   L  +N NV  GE V + G SGSGKSTL+R I  +    +G+++  G    
Sbjct: 23  LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---- 78

Query: 83  DDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKI 142
              + I +  +D+ +VFQ F LF  L+VLEN  LG +  + + K++  + A+  ++ + +
Sbjct: 79  ---KKIKDPPKDISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAIDLIGL 134

Query: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEG 202
                  ++ +SGG  QR   AR+  + P ++L DEP SALD    + +   +I+L  EG
Sbjct: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194

Query: 203 M----TMVCVTHEMGFARQVADRVVFMDQ--GQIVEQ 233
                +M+ VTH +  A  + DRV+      G+I E+
Sbjct: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score =  105 bits (263), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 124/236 (52%), Gaps = 8/236 (3%)

Query: 27  YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN---GI--PL 81
           YG   A+   NL V +GE +++ G SG+GKSTL+R IN +     GE++++   G   P 
Sbjct: 39  YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98

Query: 82  NDDIRNIHEVR-RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV 140
             D   + ++R   V MVFQ F L    +V  N  LG  ++  +P  + +     +L  V
Sbjct: 99  AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIV 157

Query: 141 KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAE 200
            +   +    ++LSGG  QR   AR+      I+L DEP S+LDP +   + D ++ L  
Sbjct: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217

Query: 201 E-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQI 255
           +   T+V V+H++  A ++ +R+  M+ G+I++  +P+E   +P +     F+ ++
Sbjct: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKL 273


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 227

 Score =  100 bits (250), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 7/207 (3%)

Query: 30  FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII-NGI--PLNDDIR 86
           F  L +++L++ +GE V +  PSG+GKST++     +E    G +II N +   L+DD +
Sbjct: 23  FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82

Query: 87  NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS 146
           +     + +G V+Q   L  + SV+EN    P  +  +  K A + AM  L+ + ++  +
Sbjct: 83  SFLRCSK-IGFVYQEHRLLMDFSVIENIIF-PQIIAGINHKTAYQRAMDLLSYMDMSQYA 140

Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMTM 205
           +R SS +SGGE QR AI R++  +P I+L DEPT  LD +  ++V  I+  L    G+  
Sbjct: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200

Query: 206 VCVTHEMGFARQVADRVVFMDQGQIVE 232
           +  TH    A Q+ DR + +  G I +
Sbjct: 201 LIATHNHDLASQM-DRQITIRDGMIAD 226


>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 262

 Score = 91.7 bits (226), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 23  LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
           L K Y + + ++ ++L V  GE V + GP+G+GK+T    +  +    +G I I+G    
Sbjct: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---- 86

Query: 83  DDIRNIHEVRRD-VGMVF--QHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNK 139
           +DI  +   RR  +G+ +  Q  ++F  L+V EN  L  + V +  KK   E     L +
Sbjct: 87  NDITKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKE 145

Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA 199
             I    H  + LLSGG+ +R  IARSL   P  +L DEP + +DP  + ++  ++ +LA
Sbjct: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205

Query: 200 EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
             G+ ++   H +     + DR   +  G ++   + +E  +N    R
Sbjct: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253


>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 257

 Score = 88.2 bits (217), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 113/210 (53%), Gaps = 9/210 (4%)

Query: 39  NVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-DDIRNIHEVRRDVGM 97
           ++LRGE + + G SG+GKS L+R I  +    +GE+ + G  LN    +        +G+
Sbjct: 35  DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV 94

Query: 98  VFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSL----L 153
           +FQH  LFS+++V EN ++ PI        D  E  +H   K+ I      +++L    L
Sbjct: 95  LFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVH--TKIAIVGLPPETANLMPFQL 151

Query: 154 SGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMVCVTHEM 212
           SGG  +R ++AR+L + P ++  DEPTS LDP   +E   ++I+L    G+++  +TH++
Sbjct: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211

Query: 213 GFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
                  +RV  + +  I+++ +  +  ++
Sbjct: 212 NNLISTCNRVAVIQKKGIMKEGTISDIVDS 241


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 76.6 bits (187), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 15/210 (7%)

Query: 32  ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
            L  INL    G+   + GPSGSGKST+I  +  +    +G I I+GI + D       +
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI--TFSSL 425

Query: 92  RRDVGMVFQHFNLFSNLSVLENCTLG-PIWVRKMPKKDAEELAMH-YLNKVKIADKSH-- 147
           R  +  V Q   LFSN +V  N  +G P+   +   + A+    H ++  +     ++  
Sbjct: 426 RERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484

Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE---MVKEVLDIMIELAEEGMT 204
            + S LSGG+ QR AIAR++     I++ DE TSALD     +V++ L  ++    +G T
Sbjct: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM----QGRT 540

Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQN 234
            + + H +    + AD ++F++ G++ E  
Sbjct: 541 TIVIAHRISTIIE-ADHIIFIEDGKVSESG 569


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 70.5 bits (171), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 33/225 (14%)

Query: 33  LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI--HE 90
            + I+  +   ++  + G SG GKST+ + +  +   + G I I+G     DI+ I    
Sbjct: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG----QDIKKITKES 428

Query: 91  VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150
           +R+ +G++ Q   LF++ ++  N   G       P    +EL       V++A       
Sbjct: 429 LRQTIGIIPQDTILFND-TLRYNILYGN------PNASDQELCA----AVEVAQLKSFIM 477

Query: 151 SL--------------LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMI 196
            L              LSGGE QR +IAR++   P I++FDE TS+LD    + +   + 
Sbjct: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537

Query: 197 ELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
            L++   T+V + H +      AD ++  DQG +VE  S E   +
Sbjct: 538 TLSKNRTTLV-IAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
           ABC transporter protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 240

 Score = 70.1 bits (170), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 33/225 (14%)

Query: 30  FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG------EIIINGIPLND 83
           +  L+DIN  +   E V + GP+GSGKST+ + I  I K   G      ++I+  +P   
Sbjct: 23  YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82

Query: 84  DIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA 143
            I N                    LS++   TL       MP   + +  +  L++V + 
Sbjct: 83  TIENTLP-----------------LSLMRFMTL------SMP--SSRDDVLQILDRVNLI 117

Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-G 202
            K +R+   LSGGE QRA +A++L  +P +++ DEP   +D      + +++  + +  G
Sbjct: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177

Query: 203 MTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
             ++ ++H +       D V+ ++  +I  Q  P+   +N ++ R
Sbjct: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score = 69.3 bits (168), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 15/249 (6%)

Query: 3   NTPINSKNPPKNNFAV----EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKST 58
           ++PI+S+  P           + F+         L+++N  V  GE + + G SG+GK++
Sbjct: 272 SSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTS 331

Query: 59  LIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP 118
           +   I       +G + I GI L   + ++ E+RR +  V QH  + +  SV +N  +G 
Sbjct: 332 IFSLILRFYDPCSGSVEIEGIDLR--LLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGC 388

Query: 119 IWVRKMPKKDAEELAMHYLNKVKIADKSHRS-----SSLLSGGESQRAAIARSLCMQPKI 173
               +   ++A  LA  +   +   +  + +     +  LS G+ QR AIAR++     I
Sbjct: 389 PHATRKEIQNAAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPI 447

Query: 174 MLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQ 233
           +L DE  SALD E  +++  ++ E    G T +  +H +  A Q AD V  +    IVE+
Sbjct: 448 LLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEK 505

Query: 234 NSPEEFFNN 242
              EE    
Sbjct: 506 GVHEELLKK 514


>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 280

 Score = 61.2 bits (147), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 109/250 (43%), Gaps = 36/250 (14%)

Query: 17  AVEIKFLNKWYGN-FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74
            +E+K ++  Y N + AL D+NL +       + G +G+GKSTL + I  +     G I 
Sbjct: 11  GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70

Query: 75  -------------IINGIPLNDDIRNIHEVR-RDVGMV--FQHFNLFSNLSVLENCTLGP 118
                        +I  IP  + I     +   DV M+  ++H N               
Sbjct: 71  IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMN--------------- 115

Query: 119 IWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDE 178
            W R++   +   +    L  V ++    R    LS G+ +R  +AR+L  + ++++ DE
Sbjct: 116 -W-RRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDE 173

Query: 179 PTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
           P +A+D +  +E++ ++  L  E + ++  TH +       DR +F+ +  ++      +
Sbjct: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSD 232

Query: 239 FFNNPQHERT 248
            FN    ++T
Sbjct: 233 IFNEDNIQKT 242


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 60.5 bits (145), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 20/208 (9%)

Query: 16  FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75
             +E   + K Y +   ++D +L +  GE + I GP+G+GK+TL++ +    K   G I 
Sbjct: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342

Query: 76  INGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMH 135
           +     N  I  I + R D+       +L S L+     +L       M + ++  +A +
Sbjct: 343 LGT---NLKIATIDQKREDID---PDKSLASYLTGSSGDSL-------MVRGESRHVAGY 389

Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
             + +   D++H     LSGGE  RA +AR L      ++ DEPT+ LD E +  +   +
Sbjct: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449

Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVV 223
            +L  +G T++ V+H+  F     DR V
Sbjct: 450 TQL--QG-TILIVSHDRDF----LDRTV 470



 Score = 53.9 bits (128), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 27/203 (13%)

Query: 28  GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87
           G    L+D+ L++   ER+ + G +GSGKSTL++    I + Q+G + +           
Sbjct: 16  GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL----------- 64

Query: 88  IHEVRRDVGMVFQHFNL--FSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145
            H   R +G + Q+ +L  FS +S   + T+           +A       L K  + ++
Sbjct: 65  -HSSSR-LGYLEQNPDLSHFSTISQYIDDTIKDTI-------EAPYSPYSLLKKFNLREQ 115

Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
               +  LS G+++  A+ + L  +P I++ DEPT+ LD    + +  +  EL +    +
Sbjct: 116 DRIEN--LSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWMEQELLKINSAL 170

Query: 206 VCVTHEMGFARQVADRVVFMDQG 228
           + V+H+  F   ++   V++D+G
Sbjct: 171 IFVSHDRRFLETLSTTTVWLDRG 193


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 50.8 bits (120), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 48/244 (19%)

Query: 16  FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74
           F   +  L+K +G+   L DINL+     ++ I GP+G+GKST++R +  I+K   GE  
Sbjct: 5   FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64

Query: 75  IINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
           +  G                VG + Q   L  + +V EN   G    + +  +   EL M
Sbjct: 65  LATGFT--------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR-YNELMM 109

Query: 135 HYLNK-----------------------VKIADKSHRSS------SLLSGGESQRAAIAR 165
           +Y  K                       V++A +S          + LSGGE +R A+ +
Sbjct: 110 NYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169

Query: 166 SLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFM 225
            L   P ++L DEPT+ LD E +  +   + E +     ++ VTH+  F   V + ++ +
Sbjct: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHDRYFLDNVTNWILEV 226

Query: 226 DQGQ 229
           D+G+
Sbjct: 227 DRGK 230



 Score = 49.3 bits (116), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 29/240 (12%)

Query: 18  VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
           +E K ++K Y +   + +++  +  G  V + GP+G+GK+TL R +   E   +G I + 
Sbjct: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377

Query: 78  G---IPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
               +   D  R+  E  +               +V E+ + G   V K+   +    A 
Sbjct: 378 ETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIV-KLNGHEINSRAY 421

Query: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
                 K  D+  R  SL SGG+  R  +A+ L     ++L DEPT+ LD E +  + D 
Sbjct: 422 CSAFNFKGGDQQQRIGSL-SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480

Query: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQ 254
           +   A      V ++H+  F  ++A  ++        E N   E+F     E  +  LS+
Sbjct: 481 LENFA---GCAVIISHDRMFLDRLATHILAF------EGNGHVEWFEGNFEEYEKDKLSR 531


>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 565

 Score = 49.3 bits (116), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 34  RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR 93
           ++++  +  G   IIAGPSG GKS  + C+  +   + G I      ++ D   I +   
Sbjct: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF--IEKFSA 406

Query: 94  DVGMVFQHFNLFSNLSVLENCTLGPIW-VRKMPKKDAEELAMHY-LNKVKIADKSHRSSS 151
            +G + QH +LF  +S+ EN  L        + +K A+ +  H  +  +K   ++   S 
Sbjct: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465

Query: 152 LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE 211
            +     Q+  ++R +   P I+L DEP   LD E       ++ +  E   T+V ++H+
Sbjct: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525


>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 959

 Score = 46.2 bits (108), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 148 RSSSLLSGGESQRAAIARSLCMQPK---IMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204
           +S++ LSGGESQR  +A+ L  Q     + + DEPT+ L    + ++L+I+  L + G +
Sbjct: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900

Query: 205 MVCVTHEM 212
           ++ + H +
Sbjct: 901 IIVIEHNL 908



 Score = 41.2 bits (95), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 148 RSSSLLSGGESQRAAIARSL--CMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
           R+S++LS GESQR  +A  +   +   + + DEP+  L      ++++ +  L + G T+
Sbjct: 499 RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTV 558

Query: 206 VCVTHE---MGFARQVAD--RVVFMDQGQIVEQNSPEEFFNNP 243
           + V H+   M  A  + D      ++ G+IV + SP +   +P
Sbjct: 559 IVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601



 Score = 28.9 bits (63), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 22/29 (75%)

Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTL 59
          H L++I++ + R + +++ G SGSGKS+L
Sbjct: 15 HNLQNISIELPRNKLIVMTGVSGSGKSSL 43


>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 249

 Score = 45.4 bits (106), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 14/212 (6%)

Query: 33  LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ--AGEIIINGIPLNDDIRNIHE 90
           +R +NL V   E V I GP+GSGKSTL   ++  + ++  AG+I+  G  +  D   +  
Sbjct: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESIL-DWSIVER 77

Query: 91  VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV-KIA------ 143
             + + + FQ+      + +++   +     RK  + + E L   +  KV KI       
Sbjct: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK-ARNEKELLIPDFTRKVRKITAELGIN 136

Query: 144 -DKSHRSSSL-LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE 201
            D   R  +L  SGGE + A I +   ++P + + DE  S LD + +K     +  L  +
Sbjct: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196

Query: 202 GMTMVCVTHEMGFARQVA-DRVVFMDQGQIVE 232
             + + +TH       +  D +  +  G+I++
Sbjct: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 29.6 bits (65), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 3   NTPINSKNPPKNNFAVEIKFLNKWYGNFHALRD-------INLNVLRGERVII--AGPSG 53
             P + K+  K N    I+ L++ +     +++       + + V++ + +I+   GP G
Sbjct: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPG 376

Query: 54  SGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87
            GK++L + I      Q   + + G+    DIR 
Sbjct: 377 VGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410


>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 483

 Score = 29.6 bits (65), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)

Query: 46  VIIAGPSGSGKSTLIRCIN-HIEKHQ 70
           V+I+G +GSGK+TL+ C+  +I+K +
Sbjct: 253 VLISGGTGSGKTTLLNCLTRYIDKDE 278


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 28.9 bits (63), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 38  LNVLRGERVIIAGPSGSGKSTLIRCI 63
           ++V+ G+ +II GP G+GKS  I  I
Sbjct: 414 IDVINGKNLIIEGPPGTGKSQTITNI 439


>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 222

 Score = 28.1 bits (61), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 42 RGERVIIAGPSGSGKSTLIR 61
          RG  +II+ PSG GKST+ R
Sbjct: 14 RGMMLIISSPSGVGKSTIAR 33


>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 520

 Score = 27.3 bits (59), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE-VLDIMIELAEEGMTMV 206
           R S  +   E  +A I R +     ++L  +    +  E   E V  +    + +GMT  
Sbjct: 420 RESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTAD 479

Query: 207 CVTHEMGFARQVADRVV 223
              H+M F  QVA R+V
Sbjct: 480 FYHHDMNFLSQVAIRIV 496


>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 246

 Score = 27.3 bits (59), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 11/14 (78%), Positives = 12/14 (85%)

Query: 46 VIIAGPSGSGKSTL 59
          VI+ GPSGSGKS L
Sbjct: 67 VILVGPSGSGKSCL 80


>537021.9.peg.887_1 
          Length = 133

 Score = 26.6 bits (57), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 46  VIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLF 105
           + I+GP+ SGKS  +  +N   K     I  + + + D +R +     D  M      L+
Sbjct: 13  IFISGPTASGKS--LCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLY 70

Query: 106 SNLSVLENCTLGPIWVRKMPKKDAE 130
             +   ++ + G  W+R   KK AE
Sbjct: 71  GYVPAQKSYSTGK-WLRYAIKKIAE 94


>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 25.0 bits (53), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 42  RGERVIIAGPSGSGKSTLIRCINH 65
           +G+R +I  P  +GK+ L++ I H
Sbjct: 173 KGQRSLIVAPPRTGKTILLQNIAH 196


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 24.3 bits (51), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 46  VIIAGPSGSGKSTLIRCI 63
           V++ GP G+GK+ L R +
Sbjct: 184 VLLVGPPGTGKTLLARAV 201


>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 438

 Score = 23.9 bits (50), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 6   INSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
           I SK PP    A+  + + K +     + DI   +  G+R+ +   SG GKSTL+
Sbjct: 128 IMSKVPP----AMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178


>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 23.9 bits (50), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 45 RVIIAGPSGSGKST 58
          R+I  GP GSGK T
Sbjct: 2  RIIFLGPPGSGKGT 15


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 23.9 bits (50), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 41  LRGERVIIAGPSGSGKSTLI 60
           +RG  +++ G  G GKSTL+
Sbjct: 88  VRGSVILVGGDPGIGKSTLL 107


>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 789

 Score = 23.5 bits (49), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 42  RGERVI-IAGPSGSGKSTLIRCINH 65
           + +R I I G  GSGKSTL+  I +
Sbjct: 499 KAQRFIHIRGVGGSGKSTLMNLIKY 523


>gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 110

 Score = 23.1 bits (48), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 130 EELAMHYLNKVKIADKSHRSSSLLSG 155
           E L  + +N++ I  +   SSSLLSG
Sbjct: 81  ESLRAYEMNRIPIPARRFTSSSLLSG 106


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 23.1 bits (48), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 39  NVLRGERVIIAGPSGSGKSTLI 60
           ++ R   ++IAG +GSGKS  I
Sbjct: 450 DLARMPHLLIAGTTGSGKSVAI 471


>gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 333

 Score = 23.1 bits (48), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 44  ERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
           +RV+++ P    K T++  +NH   ++  +++ N 
Sbjct: 115 QRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNA 149


>gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 339

 Score = 23.1 bits (48), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 103 NLFSNLSVLENCTLGPIWVRKM--PKKDAEELAMHYL--NKVKIADK----SHRSSSLLS 154
            LF+ L  +  C  G +    M  P K A +++   +  N +KI  +    + +  + LS
Sbjct: 200 TLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNTIKIFKRVVPCAVQGIAFLS 259

Query: 155 GGESQRAAIAR 165
           GG+S++ A AR
Sbjct: 260 GGQSEQDATAR 270


>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 744

 Score = 23.1 bits (48), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 46  VIIAGPSGSGKSTLIRCI 63
           +++AG +GSGKS  I  +
Sbjct: 415 ILVAGTTGSGKSVAINTM 432


>gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 448

 Score = 22.7 bits (47), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 9/33 (27%)

Query: 77  NGIPLNDDI---------RNIHEVRRDVGMVFQ 100
           NGI +N D          R +HEVR D+G+   
Sbjct: 211 NGININLDCGSTNVLSLQRKVHEVRADIGIALD 243


>537021.9.peg.409_1 
          Length = 242

 Score = 22.7 bits (47), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 204 TMVCVTHEMGFARQVADRVV 223
           T++C+TH    A +++ RV+
Sbjct: 64  TLLCLTHTKAAAAEMSHRVL 83


>gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 318

 Score = 22.3 bits (46), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 33  LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75
           + D  +++ R  + I+A  +  GK  L R    ++  Q  E+I
Sbjct: 78  VSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVI 120


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 334

 Score = 22.3 bits (46), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 44 ERVIIAGPSGSGKSTLIRCI 63
          + V+  GP G GK+TL + +
Sbjct: 55 DHVLFVGPPGLGKTTLAQVV 74


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 22.3 bits (46), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 46  VIIAGPSGSGKSTLIRCINHI 66
           +++ GP+G GK+ L + +  I
Sbjct: 116 ILLVGPTGCGKTYLAQTLARI 136


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,180
Number of Sequences: 1233
Number of extensions: 6561
Number of successful extensions: 102
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 56
length of query: 257
length of database: 328,796
effective HSP length: 72
effective length of query: 185
effective length of database: 240,020
effective search space: 44403700
effective search space used: 44403700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)