BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] (257 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 535 bits (1377), Expect = e-154, Method: Compositional matrix adjust. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI Sbjct: 1 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60 Query: 61 RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW 120 RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW Sbjct: 61 RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW 120 Query: 121 VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT 180 VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT Sbjct: 121 VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT 180 Query: 181 SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240 SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF Sbjct: 181 SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240 Query: 241 NNPQHERTQAFLSQIIY 257 NNPQHERTQAFLSQIIY Sbjct: 241 NNPQHERTQAFLSQIIY 257 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 140 bits (354), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 12/237 (5%) Query: 26 WYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ-----AGEIIINGIP 80 YG AL DINL + + + GPSG GKST +RC+N + + GEII++G Sbjct: 15 CYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN 74 Query: 81 LNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP-IWVRKMPKKDAEELAMHYLNK 139 + ++ +R VGMVFQ N F S+ +N GP I K D +++ L K Sbjct: 75 IYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133 Query: 140 V----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195 ++ D+ +SLLSGG+ QR IAR+L + P+++L DEP SALDP V +++ Sbjct: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193 Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252 EL E +T+V VTH M A +V+ R G +VE++ ++ F P +RTQ ++ Sbjct: 194 HEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 114 bits (286), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77 +++ L Y N D +N + ER++I GPSG+GKSTL+ + + G I +N Sbjct: 2 IKLDHLIYCYDNLKMQFDFQVN--KAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN 59 Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137 G + R+ +R + ++FQ NLFS+L+V +N LG ++ ++ L Sbjct: 60 G---QNHTRS-SPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVK-QML 114 Query: 138 NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE 197 KV + D +R S +SGG+ QR A+AR L Q I+L DEP + DP + E+L ++ + Sbjct: 115 EKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174 Query: 198 LAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248 + +E +T++ ++H + + Q+A R + + GQIV P+ N E T Sbjct: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPEST 226 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 106 bits (265), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%) Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82 L K GN L +N NV GE V + G SGSGKSTL+R I + +G+++ G Sbjct: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---- 78 Query: 83 DDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKI 142 + I + +D+ +VFQ F LF L+VLEN LG + + + K++ + A+ ++ + + Sbjct: 79 ---KKIKDPPKDISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAIDLIGL 134 Query: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEG 202 ++ +SGG QR AR+ + P ++L DEP SALD + + +I+L EG Sbjct: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 Query: 203 M----TMVCVTHEMGFARQVADRVVFMDQ--GQIVEQ 233 +M+ VTH + A + DRV+ G+I E+ Sbjct: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 105 bits (263), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 124/236 (52%), Gaps = 8/236 (3%) Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN---GI--PL 81 YG A+ NL V +GE +++ G SG+GKSTL+R IN + GE++++ G P Sbjct: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 Query: 82 NDDIRNIHEVR-RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV 140 D + ++R V MVFQ F L +V N LG ++ +P + + +L V Sbjct: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIV 157 Query: 141 KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAE 200 + + ++LSGG QR AR+ I+L DEP S+LDP + + D ++ L Sbjct: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 Query: 201 E-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQI 255 + T+V V+H++ A ++ +R+ M+ G+I++ +P+E +P + F+ ++ Sbjct: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKL 273 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 100 bits (250), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII-NGI--PLNDDIR 86 F L +++L++ +GE V + PSG+GKST++ +E G +II N + L+DD + Sbjct: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82 Query: 87 NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS 146 + + +G V+Q L + SV+EN P + + K A + AM L+ + ++ + Sbjct: 83 SFLRCSK-IGFVYQEHRLLMDFSVIENIIF-PQIIAGINHKTAYQRAMDLLSYMDMSQYA 140 Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMTM 205 +R SS +SGGE QR AI R++ +P I+L DEPT LD + ++V I+ L G+ Sbjct: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200 Query: 206 VCVTHEMGFARQVADRVVFMDQGQIVE 232 + TH A Q+ DR + + G I + Sbjct: 201 LIATHNHDLASQM-DRQITIRDGMIAD 226 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 91.7 bits (226), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82 L K Y + + ++ ++L V GE V + GP+G+GK+T + + +G I I+G Sbjct: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---- 86 Query: 83 DDIRNIHEVRRD-VGMVF--QHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNK 139 +DI + RR +G+ + Q ++F L+V EN L + V + KK E L + Sbjct: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKE 145 Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA 199 I H + LLSGG+ +R IARSL P +L DEP + +DP + ++ ++ +LA Sbjct: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 Query: 200 EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247 G+ ++ H + + DR + G ++ + +E +N R Sbjct: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 88.2 bits (217), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 113/210 (53%), Gaps = 9/210 (4%) Query: 39 NVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-DDIRNIHEVRRDVGM 97 ++LRGE + + G SG+GKS L+R I + +GE+ + G LN + +G+ Sbjct: 35 DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV 94 Query: 98 VFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSL----L 153 +FQH LFS+++V EN ++ PI D E +H K+ I +++L L Sbjct: 95 LFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVH--TKIAIVGLPPETANLMPFQL 151 Query: 154 SGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMVCVTHEM 212 SGG +R ++AR+L + P ++ DEPTS LDP +E ++I+L G+++ +TH++ Sbjct: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 Query: 213 GFARQVADRVVFMDQGQIVEQNSPEEFFNN 242 +RV + + I+++ + + ++ Sbjct: 212 NNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 76.6 bits (187), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 15/210 (7%) Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91 L INL G+ + GPSGSGKST+I + + +G I I+GI + D + Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI--TFSSL 425 Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLG-PIWVRKMPKKDAEELAMH-YLNKVKIADKSH-- 147 R + V Q LFSN +V N +G P+ + + A+ H ++ + ++ Sbjct: 426 RERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484 Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE---MVKEVLDIMIELAEEGMT 204 + S LSGG+ QR AIAR++ I++ DE TSALD +V++ L ++ +G T Sbjct: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM----QGRT 540 Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQN 234 + + H + + AD ++F++ G++ E Sbjct: 541 TIVIAHRISTIIE-ADHIIFIEDGKVSESG 569 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 70.5 bits (171), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 33/225 (14%) Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI--HE 90 + I+ + ++ + G SG GKST+ + + + + G I I+G DI+ I Sbjct: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG----QDIKKITKES 428 Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150 +R+ +G++ Q LF++ ++ N G P +EL V++A Sbjct: 429 LRQTIGIIPQDTILFND-TLRYNILYGN------PNASDQELCA----AVEVAQLKSFIM 477 Query: 151 SL--------------LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMI 196 L LSGGE QR +IAR++ P I++FDE TS+LD + + + Sbjct: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537 Query: 197 ELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241 L++ T+V + H + AD ++ DQG +VE S E + Sbjct: 538 TLSKNRTTLV-IAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 70.1 bits (170), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 33/225 (14%) Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG------EIIINGIPLND 83 + L+DIN + E V + GP+GSGKST+ + I I K G ++I+ +P Sbjct: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82 Query: 84 DIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA 143 I N LS++ TL MP + + + L++V + Sbjct: 83 TIENTLP-----------------LSLMRFMTL------SMP--SSRDDVLQILDRVNLI 117 Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-G 202 K +R+ LSGGE QRA +A++L +P +++ DEP +D + +++ + + G Sbjct: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177 Query: 203 MTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247 ++ ++H + D V+ ++ +I Q P+ +N ++ R Sbjct: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 69.3 bits (168), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 15/249 (6%) Query: 3 NTPINSKNPPKNNFAV----EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKST 58 ++PI+S+ P + F+ L+++N V GE + + G SG+GK++ Sbjct: 272 SSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTS 331 Query: 59 LIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP 118 + I +G + I GI L + ++ E+RR + V QH + + SV +N +G Sbjct: 332 IFSLILRFYDPCSGSVEIEGIDLR--LLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGC 388 Query: 119 IWVRKMPKKDAEELAMHYLNKVKIADKSHRS-----SSLLSGGESQRAAIARSLCMQPKI 173 + ++A LA + + + + + + LS G+ QR AIAR++ I Sbjct: 389 PHATRKEIQNAAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPI 447 Query: 174 MLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQ 233 +L DE SALD E +++ ++ E G T + +H + A Q AD V + IVE+ Sbjct: 448 LLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEK 505 Query: 234 NSPEEFFNN 242 EE Sbjct: 506 GVHEELLKK 514 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 61.2 bits (147), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/250 (22%), Positives = 109/250 (43%), Gaps = 36/250 (14%) Query: 17 AVEIKFLNKWYGN-FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74 +E+K ++ Y N + AL D+NL + + G +G+GKSTL + I + G I Sbjct: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70 Query: 75 -------------IINGIPLNDDIRNIHEVR-RDVGMV--FQHFNLFSNLSVLENCTLGP 118 +I IP + I + DV M+ ++H N Sbjct: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMN--------------- 115 Query: 119 IWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDE 178 W R++ + + L V ++ R LS G+ +R +AR+L + ++++ DE Sbjct: 116 -W-RRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDE 173 Query: 179 PTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238 P +A+D + +E++ ++ L E + ++ TH + DR +F+ + ++ + Sbjct: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSD 232 Query: 239 FFNNPQHERT 248 FN ++T Sbjct: 233 IFNEDNIQKT 242 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 60.5 bits (145), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 20/208 (9%) Query: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75 +E + K Y + ++D +L + GE + I GP+G+GK+TL++ + K G I Sbjct: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342 Query: 76 INGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMH 135 + N I I + R D+ +L S L+ +L M + ++ +A + Sbjct: 343 LGT---NLKIATIDQKREDID---PDKSLASYLTGSSGDSL-------MVRGESRHVAGY 389 Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195 + + D++H LSGGE RA +AR L ++ DEPT+ LD E + + + Sbjct: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449 Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVV 223 +L +G T++ V+H+ F DR V Sbjct: 450 TQL--QG-TILIVSHDRDF----LDRTV 470 Score = 53.9 bits (128), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 27/203 (13%) Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87 G L+D+ L++ ER+ + G +GSGKSTL++ I + Q+G + + Sbjct: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL----------- 64 Query: 88 IHEVRRDVGMVFQHFNL--FSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145 H R +G + Q+ +L FS +S + T+ +A L K + ++ Sbjct: 65 -HSSSR-LGYLEQNPDLSHFSTISQYIDDTIKDTI-------EAPYSPYSLLKKFNLREQ 115 Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205 + LS G+++ A+ + L +P I++ DEPT+ LD + + + EL + + Sbjct: 116 DRIEN--LSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWMEQELLKINSAL 170 Query: 206 VCVTHEMGFARQVADRVVFMDQG 228 + V+H+ F ++ V++D+G Sbjct: 171 IFVSHDRRFLETLSTTTVWLDRG 193 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 50.8 bits (120), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 48/244 (19%) Query: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74 F + L+K +G+ L DINL+ ++ I GP+G+GKST++R + I+K GE Sbjct: 5 FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64 Query: 75 IINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134 + G VG + Q L + +V EN G + + + EL M Sbjct: 65 LATGFT--------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR-YNELMM 109 Query: 135 HYLNK-----------------------VKIADKSHRSS------SLLSGGESQRAAIAR 165 +Y K V++A +S + LSGGE +R A+ + Sbjct: 110 NYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169 Query: 166 SLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFM 225 L P ++L DEPT+ LD E + + + E + ++ VTH+ F V + ++ + Sbjct: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHDRYFLDNVTNWILEV 226 Query: 226 DQGQ 229 D+G+ Sbjct: 227 DRGK 230 Score = 49.3 bits (116), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 29/240 (12%) Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77 +E K ++K Y + + +++ + G V + GP+G+GK+TL R + E +G I + Sbjct: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 Query: 78 G---IPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134 + D R+ E + +V E+ + G V K+ + A Sbjct: 378 ETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIV-KLNGHEINSRAY 421 Query: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194 K D+ R SL SGG+ R +A+ L ++L DEPT+ LD E + + D Sbjct: 422 CSAFNFKGGDQQQRIGSL-SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480 Query: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQ 254 + A V ++H+ F ++A ++ E N E+F E + LS+ Sbjct: 481 LENFA---GCAVIISHDRMFLDRLATHILAF------EGNGHVEWFEGNFEEYEKDKLSR 531 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 49.3 bits (116), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 5/180 (2%) Query: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR 93 ++++ + G IIAGPSG GKS + C+ + + G I ++ D I + Sbjct: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF--IEKFSA 406 Query: 94 DVGMVFQHFNLFSNLSVLENCTLGPIW-VRKMPKKDAEELAMHY-LNKVKIADKSHRSSS 151 +G + QH +LF +S+ EN L + +K A+ + H + +K ++ S Sbjct: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465 Query: 152 LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE 211 + Q+ ++R + P I+L DEP LD E ++ + E T+V ++H+ Sbjct: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 46.2 bits (108), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%) Query: 148 RSSSLLSGGESQRAAIARSLCMQPK---IMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204 +S++ LSGGESQR +A+ L Q + + DEPT+ L + ++L+I+ L + G + Sbjct: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900 Query: 205 MVCVTHEM 212 ++ + H + Sbjct: 901 IIVIEHNL 908 Score = 41.2 bits (95), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 148 RSSSLLSGGESQRAAIARSL--CMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205 R+S++LS GESQR +A + + + + DEP+ L ++++ + L + G T+ Sbjct: 499 RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTV 558 Query: 206 VCVTHE---MGFARQVAD--RVVFMDQGQIVEQNSPEEFFNNP 243 + V H+ M A + D ++ G+IV + SP + +P Sbjct: 559 IVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601 Score = 28.9 bits (63), Expect = 0.089, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 22/29 (75%) Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTL 59 H L++I++ + R + +++ G SGSGKS+L Sbjct: 15 HNLQNISIELPRNKLIVMTGVSGSGKSSL 43 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 45.4 bits (106), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 14/212 (6%) Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ--AGEIIINGIPLNDDIRNIHE 90 +R +NL V E V I GP+GSGKSTL ++ + ++ AG+I+ G + D + Sbjct: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESIL-DWSIVER 77 Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV-KIA------ 143 + + + FQ+ + +++ + RK + + E L + KV KI Sbjct: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK-ARNEKELLIPDFTRKVRKITAELGIN 136 Query: 144 -DKSHRSSSL-LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE 201 D R +L SGGE + A I + ++P + + DE S LD + +K + L + Sbjct: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196 Query: 202 GMTMVCVTHEMGFARQVA-DRVVFMDQGQIVE 232 + + +TH + D + + G+I++ Sbjct: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 29.6 bits (65), Expect = 0.054, Method: Compositional matrix adjust. Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 9/94 (9%) Query: 3 NTPINSKNPPKNNFAVEIKFLNKWYGNFHALRD-------INLNVLRGERVII--AGPSG 53 P + K+ K N I+ L++ + +++ + + V++ + +I+ GP G Sbjct: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPG 376 Query: 54 SGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87 GK++L + I Q + + G+ DIR Sbjct: 377 VGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 29.6 bits (65), Expect = 0.057, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%) Query: 46 VIIAGPSGSGKSTLIRCIN-HIEKHQ 70 V+I+G +GSGK+TL+ C+ +I+K + Sbjct: 253 VLISGGTGSGKTTLLNCLTRYIDKDE 278 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 28.9 bits (63), Expect = 0.096, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 18/26 (69%) Query: 38 LNVLRGERVIIAGPSGSGKSTLIRCI 63 ++V+ G+ +II GP G+GKS I I Sbjct: 414 IDVINGKNLIIEGPPGTGKSQTITNI 439 >gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 28.1 bits (61), Expect = 0.15, Method: Compositional matrix adjust. Identities = 12/20 (60%), Positives = 15/20 (75%) Query: 42 RGERVIIAGPSGSGKSTLIR 61 RG +II+ PSG GKST+ R Sbjct: 14 RGMMLIISSPSGVGKSTIAR 33 >gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 520 Score = 27.3 bits (59), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE-VLDIMIELAEEGMTMV 206 R S + E +A I R + ++L + + E E V + + +GMT Sbjct: 420 RESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTAD 479 Query: 207 CVTHEMGFARQVADRVV 223 H+M F QVA R+V Sbjct: 480 FYHHDMNFLSQVAIRIV 496 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 27.3 bits (59), Expect = 0.26, Method: Compositional matrix adjust. Identities = 11/14 (78%), Positives = 12/14 (85%) Query: 46 VIIAGPSGSGKSTL 59 VI+ GPSGSGKS L Sbjct: 67 VILVGPSGSGKSCL 80 >537021.9.peg.887_1 Length = 133 Score = 26.6 bits (57), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 46 VIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLF 105 + I+GP+ SGKS + +N K I + + + D +R + D M L+ Sbjct: 13 IFISGPTASGKS--LCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLY 70 Query: 106 SNLSVLENCTLGPIWVRKMPKKDAE 130 + ++ + G W+R KK AE Sbjct: 71 GYVPAQKSYSTGK-WLRYAIKKIAE 94 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 42 RGERVIIAGPSGSGKSTLIRCINH 65 +G+R +I P +GK+ L++ I H Sbjct: 173 KGQRSLIVAPPRTGKTILLQNIAH 196 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 24.3 bits (51), Expect = 2.4, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 46 VIIAGPSGSGKSTLIRCI 63 V++ GP G+GK+ L R + Sbjct: 184 VLLVGPPGTGKTLLARAV 201 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Query: 6 INSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60 I SK PP A+ + + K + + DI + G+R+ + SG GKSTL+ Sbjct: 128 IMSKVPP----AMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178 >gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 201 Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust. Identities = 9/14 (64%), Positives = 10/14 (71%) Query: 45 RVIIAGPSGSGKST 58 R+I GP GSGK T Sbjct: 2 RIIFLGPPGSGKGT 15 >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 41 LRGERVIIAGPSGSGKSTLI 60 +RG +++ G G GKSTL+ Sbjct: 88 VRGSVILVGGDPGIGKSTLL 107 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 23.5 bits (49), Expect = 3.3, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Query: 42 RGERVI-IAGPSGSGKSTLIRCINH 65 + +R I I G GSGKSTL+ I + Sbjct: 499 KAQRFIHIRGVGGSGKSTLMNLIKY 523 >gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62] Length = 110 Score = 23.1 bits (48), Expect = 4.9, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 130 EELAMHYLNKVKIADKSHRSSSLLSG 155 E L + +N++ I + SSSLLSG Sbjct: 81 ESLRAYEMNRIPIPARRFTSSSLLSG 106 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 23.1 bits (48), Expect = 5.1, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 39 NVLRGERVIIAGPSGSGKSTLI 60 ++ R ++IAG +GSGKS I Sbjct: 450 DLARMPHLLIAGTTGSGKSVAI 471 >gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 23.1 bits (48), Expect = 5.1, Method: Compositional matrix adjust. Identities = 8/35 (22%), Positives = 20/35 (57%) Query: 44 ERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78 +RV+++ P K T++ +NH ++ +++ N Sbjct: 115 QRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNA 149 >gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus str. psy62] Length = 339 Score = 23.1 bits (48), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Query: 103 NLFSNLSVLENCTLGPIWVRKM--PKKDAEELAMHYL--NKVKIADK----SHRSSSLLS 154 LF+ L + C G + M P K A +++ + N +KI + + + + LS Sbjct: 200 TLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNTIKIFKRVVPCAVQGIAFLS 259 Query: 155 GGESQRAAIAR 165 GG+S++ A AR Sbjct: 260 GGQSEQDATAR 270 >gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 744 Score = 23.1 bits (48), Expect = 5.4, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 46 VIIAGPSGSGKSTLIRCI 63 +++AG +GSGKS I + Sbjct: 415 ILVAGTTGSGKSVAINTM 432 >gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 448 Score = 22.7 bits (47), Expect = 7.1, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 9/33 (27%) Query: 77 NGIPLNDDI---------RNIHEVRRDVGMVFQ 100 NGI +N D R +HEVR D+G+ Sbjct: 211 NGININLDCGSTNVLSLQRKVHEVRADIGIALD 243 >537021.9.peg.409_1 Length = 242 Score = 22.7 bits (47), Expect = 7.2, Method: Compositional matrix adjust. Identities = 7/20 (35%), Positives = 14/20 (70%) Query: 204 TMVCVTHEMGFARQVADRVV 223 T++C+TH A +++ RV+ Sbjct: 64 TLLCLTHTKAAAAEMSHRVL 83 >gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 22.3 bits (46), Expect = 8.0, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 21/43 (48%) Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75 + D +++ R + I+A + GK L R ++ Q E+I Sbjct: 78 VSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVI 120 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 22.3 bits (46), Expect = 8.4, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 44 ERVIIAGPSGSGKSTLIRCI 63 + V+ GP G GK+TL + + Sbjct: 55 DHVLFVGPPGLGKTTLAQVV 74 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 22.3 bits (46), Expect = 9.0, Method: Compositional matrix adjust. Identities = 7/21 (33%), Positives = 14/21 (66%) Query: 46 VIIAGPSGSGKSTLIRCINHI 66 +++ GP+G GK+ L + + I Sbjct: 116 ILLVGPTGCGKTYLAQTLARI 136 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 165,180 Number of Sequences: 1233 Number of extensions: 6561 Number of successful extensions: 102 Number of sequences better than 100.0: 45 Number of HSP's better than 100.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 56 length of query: 257 length of database: 328,796 effective HSP length: 72 effective length of query: 185 effective length of database: 240,020 effective search space: 44403700 effective search space used: 44403700 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)