Query gi|254780174|ref|YP_003064587.1| putative oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 78 No_of_seqs 103 out of 452 Neff 4.8 Searched_HMMs 23785 Date Mon May 23 09:34:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780174.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2jya_A AGR_C_3324P, uncharacte 100.0 2.3E-36 9.5E-41 244.1 5.0 78 1-78 27-104 (106) 2 1kor_A Argininosuccinate synth 58.6 3.6 0.00015 22.1 1.7 22 31-52 146-167 (400) 3 2nz2_A Argininosuccinate synth 54.1 4.8 0.0002 21.3 1.7 21 31-51 154-174 (413) 4 1k92_A Argininosuccinate synth 49.6 6.3 0.00026 20.6 1.8 22 31-52 164-185 (455) 5 2hpu_A NOSL protein; alpha bet 46.7 10 0.00044 19.2 2.5 24 24-47 108-132 (175) 6 3lo3_A Uncharacterized conserv 42.9 17 0.00072 17.9 3.1 23 21-43 49-71 (94) 7 1vl2_A Argininosuccinate synth 38.9 5.3 0.00022 21.1 0.0 22 31-52 163-184 (421) 8 2fiu_A Conserved hypothetical 37.3 23 0.00098 17.1 3.1 20 24-43 53-72 (99) 9 1uas_A Alpha-galactosidase; TI 35.1 18 0.00078 17.7 2.3 39 13-53 8-51 (362) 10 1tif_A IF3-N, translation init 33.9 24 0.001 17.0 2.8 36 30-65 26-63 (78) 11 1vkz_A Phosphoribosylamine--gl 33.1 26 0.0011 16.8 2.8 24 30-53 125-148 (412) 12 1ktb_A Alpha-N-acetylgalactosa 32.7 8.6 0.00036 19.7 0.3 42 12-53 7-61 (405) 13 2d73_A Alpha-glucosidase SUSB; 31.2 25 0.001 16.9 2.4 25 29-53 367-391 (738) 14 2yrx_A Phosphoribosylglycinami 30.7 34 0.0014 16.1 3.3 22 31-52 143-164 (451) 15 3bsu_A Ribonuclease H1, RNAse 30.1 19 0.00082 17.6 1.7 18 28-45 34-51 (53) 16 3jtn_A YPBH, adapter protein M 29.3 35 0.0015 16.0 3.0 20 26-45 1-20 (91) 17 1tks_A 3,4-dihydroxy-2-butanon 29.0 25 0.001 17.0 2.1 20 33-52 176-195 (204) 18 2yw2_A Phosphoribosylamine--gl 28.7 37 0.0015 15.9 3.1 23 31-53 122-144 (424) 19 2asy_A Protein YDHR precursor; 28.0 38 0.0016 15.8 3.3 45 18-64 63-108 (123) 20 1g57_A DHBP synthase, 3,4-dihy 27.9 33 0.0014 16.2 2.6 23 32-54 182-204 (217) 21 2vld_A NUCS, UPF0286 protein p 26.8 33 0.0014 16.2 2.4 39 24-62 202-240 (251) 22 2hiq_A Hypothetical protein YD 26.8 38 0.0016 15.8 2.8 28 18-45 48-76 (113) 23 1gqe_A Release factor 2, RF2; 26.8 28 0.0012 16.6 2.1 17 39-55 153-169 (365) 24 1qhk_A RNAse HI, protein (ribo 25.8 27 0.0011 16.7 1.8 14 28-41 32-45 (47) 25 1xod_A Spred1; sprouty, EVH1, 24.4 44 0.0018 15.4 3.1 19 26-44 89-107 (118) 26 2jp2_A Spred-2, sprouty-relate 24.3 44 0.0018 15.4 3.4 19 26-44 98-116 (126) 27 2hw0_A Replicase; alpha+beta, 23.6 30 0.0012 16.5 1.7 29 28-56 82-111 (115) 28 3a24_A Alpha-galactosidase; gl 22.5 44 0.0019 15.4 2.4 23 32-54 308-330 (641) 29 2ip4_A PURD, phosphoribosylami 22.4 48 0.002 15.2 3.5 20 35-54 50-69 (417) 30 2qk4_A Trifunctional purine bi 22.4 48 0.002 15.2 3.6 28 28-55 70-97 (452) 31 3oir_A Sulfate transporter sul 21.2 38 0.0016 15.8 1.9 15 31-45 114-128 (135) 32 2g0w_A LMO2234 protein; putati 20.6 52 0.0022 15.0 2.7 35 18-52 13-55 (296) 33 1i2h_A PSD-ZIP45(homer-1C/VESL 20.2 53 0.0022 14.9 2.5 17 29-45 92-108 (168) No 1 >2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} Probab=100.00 E-value=2.3e-36 Score=244.13 Aligned_cols=78 Identities=49% Similarity=0.831 Sum_probs=77.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCC Q ss_conf 900036689820777363027776520499819989999999986984899567767755655655204678888889 Q gi|254780174|r 1 MLEFEKITPPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSYQRNFSYDRLEPWTH 78 (78) Q Consensus 1 vLEfe~~~~~~~dpLMGWtss~Dt~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~~~ksYadNF~~~R~~~WtH 78 (78) +|||++..++++||||||+||+||++||+|+|+|+|+||+||+++||+|+|++|+.|++++|||||||++||++|||| T Consensus 27 ~Lef~~~~~~~~dpLMGWtsS~Dt~~qv~L~F~skE~Ai~yA~k~g~~y~V~ep~~r~~~~ksYadNF~~~R~~~wtH 104 (106) T 2jya_A 27 VLEFDAEVPRKIDPIMGYTSSSDMKQQVKLTFETQEQAEAYAQRKGIEYRVILPKEATRKVVSYTDNFRFNRTQPWTH 104 (106) T ss_dssp EEEEEEECCSCCCTTTCSCSCCCSEEEEEEEESSHHHHHHHHHHHTCEEEECCCTTC--------------------- T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCC T ss_conf 998716777434787442266774686388758999999999986983999756766676341799777788877889 No 2 >1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Probab=58.60 E-value=3.6 Score=22.07 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.2 Q ss_pred EECCHHHHHHHHHHCCCCEEEE Q ss_conf 8199899999999869848995 Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQYCVI 52 (78) Q Consensus 31 ~F~tkE~Ai~yA~~~g~~y~V~ 52 (78) .|.++++.|+||+++||+..+. T Consensus 146 ~~~sR~~~i~ya~~~gIpv~~~ 167 (400) T 1kor_A 146 SFQGRKEMIAYAEAHGIPVPVT 167 (400) T ss_dssp CCCSHHHHHHHHHHTTCCCC-- T ss_pred CCCCHHHHHHHHHHCCCCCCCC T ss_conf 5366799999999849998656 No 3 >2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, structural genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Probab=54.11 E-value=4.8 Score=21.33 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.1 Q ss_pred EECCHHHHHHHHHHCCCCEEE Q ss_conf 819989999999986984899 Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQYCV 51 (78) Q Consensus 31 ~F~tkE~Ai~yA~~~g~~y~V 51 (78) .|.|+++.|+||+++||.... T Consensus 154 ~~~sR~e~i~y~~~~gi~v~~ 174 (413) T 2nz2_A 154 RFKGRNDLMEYAKQHGIPIPV 174 (413) T ss_dssp TCC-CHHHHHHHHHTTCCCCS T ss_pred HHCCHHHHHHHHHHCCCCCCC T ss_conf 307899999999985999876 No 4 >1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Probab=49.62 E-value=6.3 Score=20.60 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=18.4 Q ss_pred EECCHHHHHHHHHHCCCCEEEE Q ss_conf 8199899999999869848995 Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQYCVI 52 (78) Q Consensus 31 ~F~tkE~Ai~yA~~~g~~y~V~ 52 (78) .|.++++.++||+++||+..+. T Consensus 164 ~~~sR~~~i~ya~~~gIpv~~~ 185 (455) T 1k92_A 164 ELGGRHEMSEFMIACGFDYKMS 185 (455) T ss_dssp HSSSHHHHHHHHHHTTCCCCCC T ss_pred HHHHHHHHHHHHHHHCCCCCCC T ss_conf 7765999999899719998876 No 5 >2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A Probab=46.70 E-value=10 Score=19.24 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=19.6 Q ss_pred CCCE-EEEEECCHHHHHHHHHHCCC Q ss_conf 6520-49981998999999998698 Q gi|254780174|r 24 TLQQ-VKLFFPSLEAAEKYASDHGI 47 (78) Q Consensus 24 t~~q-v~L~F~tkE~Ai~yA~~~g~ 47 (78) ++.. -.+-|.++++|.+|++++|= T Consensus 108 pMG~~~~vaFa~~~dAe~F~~e~GG 132 (175) T 2hpu_A 108 GMGAPEAVPFSSRDEAAAFVLAEGG 132 (175) T ss_dssp SSSCCCEEEESCHHHHHHHHHHTEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 8998652475899999999998299 No 6 >3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.38A {Colwellia psychrerythraea} Probab=42.88 E-value=17 Score=17.92 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=17.5 Q ss_pred CCCCCCEEEEEECCHHHHHHHHH Q ss_conf 77765204998199899999999 Q gi|254780174|r 21 SKDTLQQVKLFFPSLEAAEKYAS 43 (78) Q Consensus 21 s~Dt~~qv~L~F~tkE~Ai~yA~ 43 (78) ..+...-|-+.|+|+|+|++|-. T Consensus 49 ~~~~~~~viieFps~~~a~~~~~ 71 (94) T 3lo3_A 49 KFEHKAQVILEFPSREDAYNWYH 71 (94) T ss_dssp CCCCSEEEEEEESSHHHHHHHHH T ss_pred CCCCCEEEEEECCCHHHHHHHHC T ss_conf 78887799998899999998878 No 7 >1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Probab=38.93 E-value=5.3 Score=21.06 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.3 Q ss_pred EECCHHHHHHHHHHCCCCEEEE Q ss_conf 8199899999999869848995 Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQYCVI 52 (78) Q Consensus 31 ~F~tkE~Ai~yA~~~g~~y~V~ 52 (78) .|.++++.|+||+++||...+. T Consensus 163 ~~~~R~~~i~ya~~~gI~v~~~ 184 (421) T 1vl2_A 163 KFKGRTDLINYAMEKGIPIKVS 184 (421) T ss_dssp HTC--CHHHHHHHHHTCCCCSS T ss_pred HHCCHHHHHHHHHHCCCCCCCC T ss_conf 2011999999999759997311 No 8 >2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, PSI, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16 Probab=37.33 E-value=23 Score=17.11 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.0 Q ss_pred CCCEEEEEECCHHHHHHHHH Q ss_conf 65204998199899999999 Q gi|254780174|r 24 TLQQVKLFFPSLEAAEKYAS 43 (78) Q Consensus 24 t~~qv~L~F~tkE~Ai~yA~ 43 (78) ...-|-+.|+|+|+|.+|-. T Consensus 53 ~~~~viieFps~e~a~~~~~ 72 (99) T 2fiu_A 53 RARNVVIEFPSVQHAIDCYN 72 (99) T ss_dssp CSEEEEEEESSHHHHHHHHH T ss_pred CCEEEEEECCCHHHHHHHHC T ss_conf 75489998499999998878 No 9 >1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 Probab=35.09 E-value=18 Score=17.72 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=23.0 Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHH-----HCCCCEEEEC Q ss_conf 7773630277765204998199899999999-----8698489956 Q gi|254780174|r 13 EPLLGYTSSKDTLQQVKLFFPSLEAAEKYAS-----DHGIQYCVIP 53 (78) Q Consensus 13 dpLMGWtss~Dt~~qv~L~F~tkE~Ai~yA~-----~~g~~y~V~~ 53 (78) -|-|||+|=......| ..++..+.+.++. +.|++|.|+. T Consensus 8 ~Pp~GwnsW~~~~~~i--~e~~~~~~~d~~a~~gl~~~G~e~~viD 51 (362) T 1uas_A 8 TPQMGWNSWNHFYCGI--NEQIIRETADALVNTGLAKLGYQYVNID 51 (362) T ss_dssp SCCEEEESHHHHTTCC--CHHHHHHHHHHHHHTSHHHHTCCEEECC T ss_pred CCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHCCCHHHCCEEEEEC T ss_conf 9997356577508778--9999999999999768353197899983 No 10 >1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1 Probab=33.93 E-value=24 Score=16.99 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=25.1 Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCCCCCC--CCCCHH Q ss_conf 981998999999998698489956776775--565565 Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSCKESQ--KELSYQ 65 (78) Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~--~~ksYa 65 (78) |---+.++|+..|+..|++...+-|..... +.-.|+ T Consensus 26 lGv~~~~eAl~~A~~~~lDLV~vs~~~~PPVcKi~dyg 63 (78) T 1tif_A 26 LGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYG 63 (78) T ss_dssp EEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHH T ss_pred ECCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCH T ss_conf 67162999999999869978998899999889997515 No 11 >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=33.08 E-value=26 Score=16.78 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=21.2 Q ss_pred EEECCHHHHHHHHHHCCCCEEEEC Q ss_conf 981998999999998698489956 Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIP 53 (78) Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~ 53 (78) -.|.+.++|+.|+++++.++.|.. T Consensus 125 ~~f~~~~ea~~~~~~~~~PvVIKa 148 (412) T 1vkz_A 125 EVAETPEELREKIKKFSPPYVIKA 148 (412) T ss_dssp EEESSHHHHHHHHTTSCSSEEEEE T ss_pred CCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 102679999999871799789970 No 12 >1ktb_A Alpha-N-acetylgalactosaminidase; glycoprotein, (beta/alpha)8 barrel, hydrolase; HET: NAG; 1.90A {Gallus gallus} SCOP: b.71.1.1 c.1.8.1 PDB: 1ktc_A* 3h55_A* 3h54_A* 3h53_A* 3igu_A* Probab=32.68 E-value=8.6 Score=19.75 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=19.5 Q ss_pred CCCCCCCCCCCCCCCEE--------EEEECCHHHHHHHH-----HHCCCCEEEEC Q ss_conf 07773630277765204--------99819989999999-----98698489956 Q gi|254780174|r 12 IEPLLGYTSSKDTLQQV--------KLFFPSLEAAEKYA-----SDHGIQYCVIP 53 (78) Q Consensus 12 ~dpLMGWtss~Dt~~qv--------~L~F~tkE~Ai~yA-----~~~g~~y~V~~ 53 (78) .-|-|||+|=.-....+ .+....-.+.+.++ +..|++|+++. T Consensus 7 ~~PpmGWnSW~~~~~~~~~~~~~~~~~~e~~i~~~ad~~~~~gl~~~G~e~~~iD 61 (405) T 1ktb_A 7 RTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINID 61 (405) T ss_dssp SSCCEEEESHHHHTTCCCTTTCTTTSSSHHHHHHHHHHHHHSSHHHHTCCEEECC T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCEEEEEE T ss_conf 8999754286751613464323334544999999999999775264098699996 No 13 >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Probab=31.18 E-value=25 Score=16.93 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=19.4 Q ss_pred EEEECCHHHHHHHHHHCCCCEEEEC Q ss_conf 9981998999999998698489956 Q gi|254780174|r 29 KLFFPSLEAAEKYASDHGIQYCVIP 53 (78) Q Consensus 29 ~L~F~tkE~Ai~yA~~~g~~y~V~~ 53 (78) -+.-++--.=|.||.++||+|.+++ T Consensus 367 g~nt~~~k~yIDfAA~~G~eYvLvD 391 (738) T 2d73_A 367 SANTANVKRYIDFAAAHGFDAVLVE 391 (738) T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEC T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 7787899999999998399889994 No 14 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=30.70 E-value=34 Score=16.11 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=10.2 Q ss_pred EECCHHHHHHHHHHCCCCEEEE Q ss_conf 8199899999999869848995 Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQYCVI 52 (78) Q Consensus 31 ~F~tkE~Ai~yA~~~g~~y~V~ 52 (78) .|.+.++|+.|+++.|.++.|. T Consensus 143 ~~~~~~ea~~~~~~~g~P~VIK 164 (451) T 2yrx_A 143 AFTSYEEAKAYIEQKGAPIVIK 164 (451) T ss_dssp EESCHHHHHHHHHHHCSSEEEE T ss_pred EEECHHHHHHHHHHCCCCEEEE T ss_conf 9978999999986049966996 No 15 >3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens} Probab=30.11 E-value=19 Score=17.59 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=15.2 Q ss_pred EEEEECCHHHHHHHHHHC Q ss_conf 499819989999999986 Q gi|254780174|r 28 VKLFFPSLEAAEKYASDH 45 (78) Q Consensus 28 v~L~F~tkE~Ai~yA~~~ 45 (78) +--.|+|+++|.+|.+.+ T Consensus 34 ~~k~F~t~~eA~~fl~~~ 51 (53) T 3bsu_A 34 RFKKFATEDEAWAFVRKS 51 (53) T ss_dssp EEEEESSHHHHHHHHHC- T ss_pred EECCCCCHHHHHHHHHHC T ss_conf 578859999999999706 No 16 >3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A Probab=29.34 E-value=35 Score=16.00 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=17.4 Q ss_pred CEEEEEECCHHHHHHHHHHC Q ss_conf 20499819989999999986 Q gi|254780174|r 26 QQVKLFFPSLEAAEKYASDH 45 (78) Q Consensus 26 ~qv~L~F~tkE~Ai~yA~~~ 45 (78) .+|-..|++.|+.|++|+.- T Consensus 1 ~~vi~~F~~fedvi~~a~~l 20 (91) T 3jtn_A 1 ADIIYQFHSFEDIIQLSESL 20 (91) T ss_dssp -CEEEEESSHHHHHHHHHHH T ss_pred CCEEEEECCHHHHHHHHHHC T ss_conf 92999919999999999863 No 17 >1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Probab=28.95 E-value=25 Score=16.97 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=14.4 Q ss_pred CCHHHHHHHHHHCCCCEEEE Q ss_conf 99899999999869848995 Q gi|254780174|r 33 PSLEAAEKYASDHGIQYCVI 52 (78) Q Consensus 33 ~tkE~Ai~yA~~~g~~y~V~ 52 (78) -++++|..||++||+.+.=+ T Consensus 176 ~~~~~~~~fA~~~~l~~i~i 195 (204) T 1tks_A 176 MRLDDCIQFGKKHGIKIINI 195 (204) T ss_dssp CBHHHHHHHHHHHTCCEEEH T ss_pred CCHHHHHHHHHHCCCCEEEH T ss_conf 58899999999849969989 No 18 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=28.67 E-value=37 Score=15.90 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=14.0 Q ss_pred EECCHHHHHHHHHHCCCCEEEEC Q ss_conf 81998999999998698489956 Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQYCVIP 53 (78) Q Consensus 31 ~F~tkE~Ai~yA~~~g~~y~V~~ 53 (78) .|.+.|+|.+|++..|+++.|.. T Consensus 122 ~~~~~~ea~~~~~~~g~P~VIKp 144 (424) T 2yw2_A 122 VFTDFEKAKEYVEKVGAPIVVKA 144 (424) T ss_dssp EESCHHHHHHHHHHHCSSEEEEE T ss_pred CCCCHHHHHHHHHHCCCCEEEEE T ss_conf 55619999999986499789985 No 19 >2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} SCOP: d.58.4.12 Probab=27.99 E-value=38 Score=15.82 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=26.7 Q ss_pred CCCCCCCCC-EEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCH Q ss_conf 302777652-04998199899999999869848995677677556556 Q gi|254780174|r 18 YTSSKDTLQ-QVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSY 64 (78) Q Consensus 18 Wtss~Dt~~-qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~~~ksY 64 (78) |+++.++.. .=...|+|+|+|.+|++.+ .-++..+.-..++.|.| T Consensus 63 w~~n~~~~~~GGvYlF~s~e~Ae~Y~e~h--~arl~~~gv~~v~~kiF 108 (123) T 2asy_A 63 WTESEKNHEAGGIYLFTDEKSALAYLEKH--TARLKNLGVEEVVAKVF 108 (123) T ss_dssp CBCBTTTTEEEEEEEESCHHHHHHHHHHH--HHHHHHHSSSCCBCCBC T ss_pred EEECCCCCEEEEEEEECCHHHHHHHHHHH--HHHHHCCCCCCEEEEEE T ss_conf 86448988842799978999999999999--99985589873377997 No 20 >1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3h07_A Probab=27.90 E-value=33 Score=16.19 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=17.9 Q ss_pred ECCHHHHHHHHHHCCCCEEEECC Q ss_conf 19989999999986984899567 Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIPS 54 (78) Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~p 54 (78) -..+++|..||++||+.+.-++. T Consensus 182 ~~~~~~~~~fA~~~~l~~isi~d 204 (217) T 1g57_A 182 MARAPECIEFANKHNMALVTIED 204 (217) T ss_dssp BCCHHHHHHHHHHTTCEEEEHHH T ss_pred CCCHHHHHHHHHHCCCCEEEHHH T ss_conf 26889999999983997998999 No 21 >2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} Probab=26.83 E-value=33 Score=16.20 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=28.0 Q ss_pred CCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 652049981998999999998698489956776775565 Q gi|254780174|r 24 TLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKEL 62 (78) Q Consensus 24 t~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~~~k 62 (78) +-..|-+.=.-.+.|..+|+..||+|....|.++..+.+ T Consensus 202 ~VrGIlvA~~it~~a~~ll~~~Gie~~~~~p~k~l~~~~ 240 (251) T 2vld_A 202 NVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKKGNEKR 240 (251) T ss_dssp CEEEEEEESCBCHHHHHHHHHHTCEEEECCCC------- T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHH T ss_conf 826999868699899999997897799968326654212 No 22 >2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A Probab=26.81 E-value=38 Score=15.77 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=21.1 Q ss_pred CCCCCCCCC-EEEEEECCHHHHHHHHHHC Q ss_conf 302777652-0499819989999999986 Q gi|254780174|r 18 YTSSKDTLQ-QVKLFFPSLEAAEKYASDH 45 (78) Q Consensus 18 Wtss~Dt~~-qv~L~F~tkE~Ai~yA~~~ 45 (78) |+++.++.. .=...|+|+|+|.+|.+.+ T Consensus 48 w~~~~~~~~~GGvY~f~s~~~ae~y~~~h 76 (113) T 2hiq_A 48 WTESEKNHEAGGIYLFTDEKSALAYLEKH 76 (113) T ss_dssp EEEETTTTEEEEEEEESSHHHHHHHHHHH T ss_pred EEECCCCCEEEEEEEECCHHHHHHHHHHH T ss_conf 87628889872899978999999999999 No 23 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Probab=26.78 E-value=28 Score=16.60 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.2 Q ss_pred HHHHHHCCCCEEEECCC Q ss_conf 99999869848995677 Q gi|254780174|r 39 EKYASDHGIQYCVIPSC 55 (78) Q Consensus 39 i~yA~~~g~~y~V~~p~ 55 (78) ..||+++||.++|+.-. T Consensus 153 ~ryAE~kgwk~evid~~ 169 (365) T 1gqe_A 153 LRWAESRGFKTEIIEES 169 (365) T ss_dssp HHHHHHTTCEEEEEEEE T ss_pred HHHHHHCCCEEEEEECC T ss_conf 99999859925898616 No 24 >1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2 Probab=25.76 E-value=27 Score=16.74 Aligned_cols=14 Identities=29% Similarity=0.384 Sum_probs=11.8 Q ss_pred EEEEECCHHHHHHH Q ss_conf 49981998999999 Q gi|254780174|r 28 VKLFFPSLEAAEKY 41 (78) Q Consensus 28 v~L~F~tkE~Ai~y 41 (78) +--+|+|+++|.+| T Consensus 32 ~~k~F~t~~eA~~~ 45 (47) T 1qhk_A 32 IYKKFNSYEQAKSF 45 (47) T ss_dssp CCEEESCHHHHHHH T ss_pred EECCCCCHHHHHHH T ss_conf 48886999999996 No 25 >1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Probab=24.43 E-value=44 Score=15.42 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.6 Q ss_pred CEEEEEECCHHHHHHHHHH Q ss_conf 2049981998999999998 Q gi|254780174|r 26 QQVKLFFPSLEAAEKYASD 44 (78) Q Consensus 26 ~qv~L~F~tkE~Ai~yA~~ 44 (78) ...-|.|.|.++|-.|+++ T Consensus 89 ~~~GLnF~se~eA~~F~~~ 107 (118) T 1xod_A 89 KKFGLTFQSPADARAFDRG 107 (118) T ss_dssp EEEEEEESSHHHHHHHHHH T ss_pred EEEEEECCCHHHHHHHHHH T ss_conf 7999731998999999999 No 26 >2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Probab=24.33 E-value=44 Score=15.41 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.1 Q ss_pred CEEEEEECCHHHHHHHHHH Q ss_conf 2049981998999999998 Q gi|254780174|r 26 QQVKLFFPSLEAAEKYASD 44 (78) Q Consensus 26 ~qv~L~F~tkE~Ai~yA~~ 44 (78) .+.-|.|.+.++|-.|++. T Consensus 98 ~~~GLnFase~eA~~F~~~ 116 (126) T 2jp2_A 98 RKFGLTFQSPADARAFDRG 116 (126) T ss_dssp SEEEEEESSHHHHHHHHHH T ss_pred EEEEEEECCHHHHHHHHHH T ss_conf 8999730998999999999 No 27 >2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2} Probab=23.57 E-value=30 Score=16.46 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=18.3 Q ss_pred EEEEECCHHHHHHHHHHCCCC-EEEECCCC Q ss_conf 499819989999999986984-89956776 Q gi|254780174|r 28 VKLFFPSLEAAEKYASDHGIQ-YCVIPSCK 56 (78) Q Consensus 28 v~L~F~tkE~Ai~yA~~~g~~-y~V~~p~~ 56 (78) +...=.|.++|++||.|.|=- .+.-+|.. T Consensus 82 ~E~~rGt~~q~~~YC~Keg~~~~e~G~p~~ 111 (115) T 2hw0_A 82 IEKAKGTDQQNKEYCSKEGNLLMECGAPRS 111 (115) T ss_dssp EECCCSCHHHHHHHHHTTSCEEEEEECCCC T ss_pred EEECCCCHHHHHHHHCCCCCEEEECCCCCC T ss_conf 998379989999871288961887044278 No 28 >3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} Probab=22.54 E-value=44 Score=15.38 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=17.8 Q ss_pred ECCHHHHHHHHHHCCCCEEEECC Q ss_conf 19989999999986984899567 Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIPS 54 (78) Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~p 54 (78) ..+-..-|.||.++||+|.+++. T Consensus 308 ~~~~k~yiDfaa~~G~eYvliD~ 330 (641) T 3a24_A 308 NPTYKAYIDFASANGIEYVILDE 330 (641) T ss_dssp HHHHHHHHHHHHHTTCCEEEECT T ss_pred HHHHHHHHHHHHHCCCCEEEEEE T ss_conf 78899999999986997899994 No 29 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=22.41 E-value=48 Score=15.18 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=9.5 Q ss_pred HHHHHHHHHHCCCCEEEECC Q ss_conf 89999999986984899567 Q gi|254780174|r 35 LEAAEKYASDHGIQYCVIPS 54 (78) Q Consensus 35 kE~Ai~yA~~~g~~y~V~~p 54 (78) .++-+.||+++++++.|..| T Consensus 50 ~~~i~~~~~~~~idlvivGp 69 (417) T 2ip4_A 50 VEALADWALAEGIDLTLVGP 69 (417) T ss_dssp HHHHHHHHHHHTCCEEEECS T ss_pred HHHHHHHHHHHCCCEEEECC T ss_conf 99999999985999999897 No 30 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=22.36 E-value=48 Score=15.17 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=15.7 Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEECCC Q ss_conf 4998199899999999869848995677 Q gi|254780174|r 28 VKLFFPSLEAAEKYASDHGIQYCVIPSC 55 (78) Q Consensus 28 v~L~F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78) +.+.-.+.++-++||+++.+++.|+.|- T Consensus 70 ~~i~~~d~~~i~~~~~~~~iDlvivGpE 97 (452) T 2qk4_A 70 TAISISDHTALAQFCKEKKIEFVVVGPE 97 (452) T ss_dssp CCCCSSCHHHHHHHHHHHTCCEEEECSS T ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCC T ss_conf 4658679999999999859999998973 No 31 >3oir_A Sulfate transporter sulfate transporter family PR; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; HET: MSE; 1.85A {Wolinella succinogenes} Probab=21.19 E-value=38 Score=15.77 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=11.4 Q ss_pred EECCHHHHHHHHHHC Q ss_conf 819989999999986 Q gi|254780174|r 31 FFPSLEAAEKYASDH 45 (78) Q Consensus 31 ~F~tkE~Ai~yA~~~ 45 (78) .|+|.++|+.+|+.. T Consensus 114 if~t~~~Al~~a~~~ 128 (135) T 3oir_A 114 VFDHIDKALAYAKLL 128 (135) T ss_dssp BCSSHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH T ss_conf 449999999999998 No 32 >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 Probab=20.63 E-value=52 Score=14.95 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=23.2 Q ss_pred CCCCCCCCCEEEEEEC--------CHHHHHHHHHHCCCCEEEE Q ss_conf 3027776520499819--------9899999999869848995 Q gi|254780174|r 18 YTSSKDTLQQVKLFFP--------SLEAAEKYASDHGIQYCVI 52 (78) Q Consensus 18 Wtss~Dt~~qv~L~F~--------tkE~Ai~yA~~~g~~y~V~ 52 (78) ||..++.+++++|.+. +.|+++.-|.+.|++.+=+ T Consensus 13 ~t~~~~~~~~~~i~~~~~tl~~~~~lee~l~~aae~GfdgVEl 55 (296) T 2g0w_A 13 MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGL 55 (296) T ss_dssp ---------CCCEEECGGGGTTTSCHHHHHHHHHHTTCSEEEE T ss_pred HHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE T ss_conf 3246687477884788888789999999999999969799997 No 33 >1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Probab=20.22 E-value=53 Score=14.90 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.5 Q ss_pred EEEECCHHHHHHHHHHC Q ss_conf 99819989999999986 Q gi|254780174|r 29 KLFFPSLEAAEKYASDH 45 (78) Q Consensus 29 ~L~F~tkE~Ai~yA~~~ 45 (78) -|-|.+.++|..|++.- T Consensus 92 GLnFase~eA~~F~~~v 108 (168) T 1i2h_A 92 GLGFSSEHHLSKFAEKF 108 (168) T ss_dssp EEEESSHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHH T ss_conf 63249989999999999 Done!