Query         gi|254780174|ref|YP_003064587.1| putative oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs    103 out of 452
Neff          4.8 
Searched_HMMs 23785
Date          Mon May 23 09:34:02 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780174.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2jya_A AGR_C_3324P, uncharacte 100.0 2.3E-36 9.5E-41  244.1   5.0   78    1-78     27-104 (106)
  2 1kor_A Argininosuccinate synth  58.6     3.6 0.00015   22.1   1.7   22   31-52    146-167 (400)
  3 2nz2_A Argininosuccinate synth  54.1     4.8  0.0002   21.3   1.7   21   31-51    154-174 (413)
  4 1k92_A Argininosuccinate synth  49.6     6.3 0.00026   20.6   1.8   22   31-52    164-185 (455)
  5 2hpu_A NOSL protein; alpha bet  46.7      10 0.00044   19.2   2.5   24   24-47    108-132 (175)
  6 3lo3_A Uncharacterized conserv  42.9      17 0.00072   17.9   3.1   23   21-43     49-71  (94)
  7 1vl2_A Argininosuccinate synth  38.9     5.3 0.00022   21.1   0.0   22   31-52    163-184 (421)
  8 2fiu_A Conserved hypothetical   37.3      23 0.00098   17.1   3.1   20   24-43     53-72  (99)
  9 1uas_A Alpha-galactosidase; TI  35.1      18 0.00078   17.7   2.3   39   13-53      8-51  (362)
 10 1tif_A IF3-N, translation init  33.9      24   0.001   17.0   2.8   36   30-65     26-63  (78)
 11 1vkz_A Phosphoribosylamine--gl  33.1      26  0.0011   16.8   2.8   24   30-53    125-148 (412)
 12 1ktb_A Alpha-N-acetylgalactosa  32.7     8.6 0.00036   19.7   0.3   42   12-53      7-61  (405)
 13 2d73_A Alpha-glucosidase SUSB;  31.2      25   0.001   16.9   2.4   25   29-53    367-391 (738)
 14 2yrx_A Phosphoribosylglycinami  30.7      34  0.0014   16.1   3.3   22   31-52    143-164 (451)
 15 3bsu_A Ribonuclease H1, RNAse   30.1      19 0.00082   17.6   1.7   18   28-45     34-51  (53)
 16 3jtn_A YPBH, adapter protein M  29.3      35  0.0015   16.0   3.0   20   26-45      1-20  (91)
 17 1tks_A 3,4-dihydroxy-2-butanon  29.0      25   0.001   17.0   2.1   20   33-52    176-195 (204)
 18 2yw2_A Phosphoribosylamine--gl  28.7      37  0.0015   15.9   3.1   23   31-53    122-144 (424)
 19 2asy_A Protein YDHR precursor;  28.0      38  0.0016   15.8   3.3   45   18-64     63-108 (123)
 20 1g57_A DHBP synthase, 3,4-dihy  27.9      33  0.0014   16.2   2.6   23   32-54    182-204 (217)
 21 2vld_A NUCS, UPF0286 protein p  26.8      33  0.0014   16.2   2.4   39   24-62    202-240 (251)
 22 2hiq_A Hypothetical protein YD  26.8      38  0.0016   15.8   2.8   28   18-45     48-76  (113)
 23 1gqe_A Release factor 2, RF2;   26.8      28  0.0012   16.6   2.1   17   39-55    153-169 (365)
 24 1qhk_A RNAse HI, protein (ribo  25.8      27  0.0011   16.7   1.8   14   28-41     32-45  (47)
 25 1xod_A Spred1; sprouty, EVH1,   24.4      44  0.0018   15.4   3.1   19   26-44     89-107 (118)
 26 2jp2_A Spred-2, sprouty-relate  24.3      44  0.0018   15.4   3.4   19   26-44     98-116 (126)
 27 2hw0_A Replicase; alpha+beta,   23.6      30  0.0012   16.5   1.7   29   28-56     82-111 (115)
 28 3a24_A Alpha-galactosidase; gl  22.5      44  0.0019   15.4   2.4   23   32-54    308-330 (641)
 29 2ip4_A PURD, phosphoribosylami  22.4      48   0.002   15.2   3.5   20   35-54     50-69  (417)
 30 2qk4_A Trifunctional purine bi  22.4      48   0.002   15.2   3.6   28   28-55     70-97  (452)
 31 3oir_A Sulfate transporter sul  21.2      38  0.0016   15.8   1.9   15   31-45    114-128 (135)
 32 2g0w_A LMO2234 protein; putati  20.6      52  0.0022   15.0   2.7   35   18-52     13-55  (296)
 33 1i2h_A PSD-ZIP45(homer-1C/VESL  20.2      53  0.0022   14.9   2.5   17   29-45     92-108 (168)

No 1  
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str}
Probab=100.00  E-value=2.3e-36  Score=244.13  Aligned_cols=78  Identities=49%  Similarity=0.831  Sum_probs=77.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf             900036689820777363027776520499819989999999986984899567767755655655204678888889
Q gi|254780174|r    1 MLEFEKITPPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSYQRNFSYDRLEPWTH   78 (78)
Q Consensus         1 vLEfe~~~~~~~dpLMGWtss~Dt~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~~~ksYadNF~~~R~~~WtH   78 (78)
                      +|||++..++++||||||+||+||++||+|+|+|+|+||+||+++||+|+|++|+.|++++|||||||++||++||||
T Consensus        27 ~Lef~~~~~~~~dpLMGWtsS~Dt~~qv~L~F~skE~Ai~yA~k~g~~y~V~ep~~r~~~~ksYadNF~~~R~~~wtH  104 (106)
T 2jya_A           27 VLEFDAEVPRKIDPIMGYTSSSDMKQQVKLTFETQEQAEAYAQRKGIEYRVILPKEATRKVVSYTDNFRFNRTQPWTH  104 (106)
T ss_dssp             EEEEEEECCSCCCTTTCSCSCCCSEEEEEEEESSHHHHHHHHHHHTCEEEECCCTTC---------------------
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             998716777434787442266774686388758999999999986983999756766676341799777788877889


No 2  
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=58.60  E-value=3.6  Score=22.07  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=19.2

Q ss_pred             EECCHHHHHHHHHHCCCCEEEE
Q ss_conf             8199899999999869848995
Q gi|254780174|r   31 FFPSLEAAEKYASDHGIQYCVI   52 (78)
Q Consensus        31 ~F~tkE~Ai~yA~~~g~~y~V~   52 (78)
                      .|.++++.|+||+++||+..+.
T Consensus       146 ~~~sR~~~i~ya~~~gIpv~~~  167 (400)
T 1kor_A          146 SFQGRKEMIAYAEAHGIPVPVT  167 (400)
T ss_dssp             CCCSHHHHHHHHHHTTCCCC--
T ss_pred             CCCCHHHHHHHHHHCCCCCCCC
T ss_conf             5366799999999849998656


No 3  
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, structural genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=54.11  E-value=4.8  Score=21.33  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=18.1

Q ss_pred             EECCHHHHHHHHHHCCCCEEE
Q ss_conf             819989999999986984899
Q gi|254780174|r   31 FFPSLEAAEKYASDHGIQYCV   51 (78)
Q Consensus        31 ~F~tkE~Ai~yA~~~g~~y~V   51 (78)
                      .|.|+++.|+||+++||....
T Consensus       154 ~~~sR~e~i~y~~~~gi~v~~  174 (413)
T 2nz2_A          154 RFKGRNDLMEYAKQHGIPIPV  174 (413)
T ss_dssp             TCC-CHHHHHHHHHTTCCCCS
T ss_pred             HHCCHHHHHHHHHHCCCCCCC
T ss_conf             307899999999985999876


No 4  
>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=49.62  E-value=6.3  Score=20.60  Aligned_cols=22  Identities=9%  Similarity=0.155  Sum_probs=18.4

Q ss_pred             EECCHHHHHHHHHHCCCCEEEE
Q ss_conf             8199899999999869848995
Q gi|254780174|r   31 FFPSLEAAEKYASDHGIQYCVI   52 (78)
Q Consensus        31 ~F~tkE~Ai~yA~~~g~~y~V~   52 (78)
                      .|.++++.++||+++||+..+.
T Consensus       164 ~~~sR~~~i~ya~~~gIpv~~~  185 (455)
T 1k92_A          164 ELGGRHEMSEFMIACGFDYKMS  185 (455)
T ss_dssp             HSSSHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCC
T ss_conf             7765999999899719998876


No 5  
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=46.70  E-value=10  Score=19.24  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=19.6

Q ss_pred             CCCE-EEEEECCHHHHHHHHHHCCC
Q ss_conf             6520-49981998999999998698
Q gi|254780174|r   24 TLQQ-VKLFFPSLEAAEKYASDHGI   47 (78)
Q Consensus        24 t~~q-v~L~F~tkE~Ai~yA~~~g~   47 (78)
                      ++.. -.+-|.++++|.+|++++|=
T Consensus       108 pMG~~~~vaFa~~~dAe~F~~e~GG  132 (175)
T 2hpu_A          108 GMGAPEAVPFSSRDEAAAFVLAEGG  132 (175)
T ss_dssp             SSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             8998652475899999999998299


No 6  
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.38A {Colwellia psychrerythraea}
Probab=42.88  E-value=17  Score=17.92  Aligned_cols=23  Identities=35%  Similarity=0.307  Sum_probs=17.5

Q ss_pred             CCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             77765204998199899999999
Q gi|254780174|r   21 SKDTLQQVKLFFPSLEAAEKYAS   43 (78)
Q Consensus        21 s~Dt~~qv~L~F~tkE~Ai~yA~   43 (78)
                      ..+...-|-+.|+|+|+|++|-.
T Consensus        49 ~~~~~~~viieFps~~~a~~~~~   71 (94)
T 3lo3_A           49 KFEHKAQVILEFPSREDAYNWYH   71 (94)
T ss_dssp             CCCCSEEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCHHHHHHHHC
T ss_conf             78887799998899999998878


No 7  
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=38.93  E-value=5.3  Score=21.06  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=18.3

Q ss_pred             EECCHHHHHHHHHHCCCCEEEE
Q ss_conf             8199899999999869848995
Q gi|254780174|r   31 FFPSLEAAEKYASDHGIQYCVI   52 (78)
Q Consensus        31 ~F~tkE~Ai~yA~~~g~~y~V~   52 (78)
                      .|.++++.|+||+++||...+.
T Consensus       163 ~~~~R~~~i~ya~~~gI~v~~~  184 (421)
T 1vl2_A          163 KFKGRTDLINYAMEKGIPIKVS  184 (421)
T ss_dssp             HTC--CHHHHHHHHHTCCCCSS
T ss_pred             HHCCHHHHHHHHHHCCCCCCCC
T ss_conf             2011999999999759997311


No 8  
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, PSI, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=37.33  E-value=23  Score=17.11  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=16.0

Q ss_pred             CCCEEEEEECCHHHHHHHHH
Q ss_conf             65204998199899999999
Q gi|254780174|r   24 TLQQVKLFFPSLEAAEKYAS   43 (78)
Q Consensus        24 t~~qv~L~F~tkE~Ai~yA~   43 (78)
                      ...-|-+.|+|+|+|.+|-.
T Consensus        53 ~~~~viieFps~e~a~~~~~   72 (99)
T 2fiu_A           53 RARNVVIEFPSVQHAIDCYN   72 (99)
T ss_dssp             CSEEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHC
T ss_conf             75489998499999998878


No 9  
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=35.09  E-value=18  Score=17.72  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=23.0

Q ss_pred             CCCCCCCCCCCCCCEEEEEECCHHHHHHHHH-----HCCCCEEEEC
Q ss_conf             7773630277765204998199899999999-----8698489956
Q gi|254780174|r   13 EPLLGYTSSKDTLQQVKLFFPSLEAAEKYAS-----DHGIQYCVIP   53 (78)
Q Consensus        13 dpLMGWtss~Dt~~qv~L~F~tkE~Ai~yA~-----~~g~~y~V~~   53 (78)
                      -|-|||+|=......|  ..++..+.+.++.     +.|++|.|+.
T Consensus         8 ~Pp~GwnsW~~~~~~i--~e~~~~~~~d~~a~~gl~~~G~e~~viD   51 (362)
T 1uas_A            8 TPQMGWNSWNHFYCGI--NEQIIRETADALVNTGLAKLGYQYVNID   51 (362)
T ss_dssp             SCCEEEESHHHHTTCC--CHHHHHHHHHHHHHTSHHHHTCCEEECC
T ss_pred             CCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHCCCHHHCCEEEEEC
T ss_conf             9997356577508778--9999999999999768353197899983


No 10 
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=33.93  E-value=24  Score=16.99  Aligned_cols=36  Identities=14%  Similarity=0.223  Sum_probs=25.1

Q ss_pred             EEECCHHHHHHHHHHCCCCEEEECCCCCCC--CCCCHH
Q ss_conf             981998999999998698489956776775--565565
Q gi|254780174|r   30 LFFPSLEAAEKYASDHGIQYCVIPSCKESQ--KELSYQ   65 (78)
Q Consensus        30 L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~--~~ksYa   65 (78)
                      |---+.++|+..|+..|++...+-|.....  +.-.|+
T Consensus        26 lGv~~~~eAl~~A~~~~lDLV~vs~~~~PPVcKi~dyg   63 (78)
T 1tif_A           26 LGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYG   63 (78)
T ss_dssp             EEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHH
T ss_pred             ECCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCH
T ss_conf             67162999999999869978998899999889997515


No 11 
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=33.08  E-value=26  Score=16.78  Aligned_cols=24  Identities=8%  Similarity=0.030  Sum_probs=21.2

Q ss_pred             EEECCHHHHHHHHHHCCCCEEEEC
Q ss_conf             981998999999998698489956
Q gi|254780174|r   30 LFFPSLEAAEKYASDHGIQYCVIP   53 (78)
Q Consensus        30 L~F~tkE~Ai~yA~~~g~~y~V~~   53 (78)
                      -.|.+.++|+.|+++++.++.|..
T Consensus       125 ~~f~~~~ea~~~~~~~~~PvVIKa  148 (412)
T 1vkz_A          125 EVAETPEELREKIKKFSPPYVIKA  148 (412)
T ss_dssp             EEESSHHHHHHHHTTSCSSEEEEE
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             102679999999871799789970


No 12 
>1ktb_A Alpha-N-acetylgalactosaminidase; glycoprotein, (beta/alpha)8 barrel, hydrolase; HET: NAG; 1.90A {Gallus gallus} SCOP: b.71.1.1 c.1.8.1 PDB: 1ktc_A* 3h55_A* 3h54_A* 3h53_A* 3igu_A*
Probab=32.68  E-value=8.6  Score=19.75  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=19.5

Q ss_pred             CCCCCCCCCCCCCCCEE--------EEEECCHHHHHHHH-----HHCCCCEEEEC
Q ss_conf             07773630277765204--------99819989999999-----98698489956
Q gi|254780174|r   12 IEPLLGYTSSKDTLQQV--------KLFFPSLEAAEKYA-----SDHGIQYCVIP   53 (78)
Q Consensus        12 ~dpLMGWtss~Dt~~qv--------~L~F~tkE~Ai~yA-----~~~g~~y~V~~   53 (78)
                      .-|-|||+|=.-....+        .+....-.+.+.++     +..|++|+++.
T Consensus         7 ~~PpmGWnSW~~~~~~~~~~~~~~~~~~e~~i~~~ad~~~~~gl~~~G~e~~~iD   61 (405)
T 1ktb_A            7 RTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINID   61 (405)
T ss_dssp             SSCCEEEESHHHHTTCCCTTTCTTTSSSHHHHHHHHHHHHHSSHHHHTCCEEECC
T ss_pred             CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCEEEEEE
T ss_conf             8999754286751613464323334544999999999999775264098699996


No 13 
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=31.18  E-value=25  Score=16.93  Aligned_cols=25  Identities=12%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             EEEECCHHHHHHHHHHCCCCEEEEC
Q ss_conf             9981998999999998698489956
Q gi|254780174|r   29 KLFFPSLEAAEKYASDHGIQYCVIP   53 (78)
Q Consensus        29 ~L~F~tkE~Ai~yA~~~g~~y~V~~   53 (78)
                      -+.-++--.=|.||.++||+|.+++
T Consensus       367 g~nt~~~k~yIDfAA~~G~eYvLvD  391 (738)
T 2d73_A          367 SANTANVKRYIDFAAAHGFDAVLVE  391 (738)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             7787899999999998399889994


No 14 
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=30.70  E-value=34  Score=16.11  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=10.2

Q ss_pred             EECCHHHHHHHHHHCCCCEEEE
Q ss_conf             8199899999999869848995
Q gi|254780174|r   31 FFPSLEAAEKYASDHGIQYCVI   52 (78)
Q Consensus        31 ~F~tkE~Ai~yA~~~g~~y~V~   52 (78)
                      .|.+.++|+.|+++.|.++.|.
T Consensus       143 ~~~~~~ea~~~~~~~g~P~VIK  164 (451)
T 2yrx_A          143 AFTSYEEAKAYIEQKGAPIVIK  164 (451)
T ss_dssp             EESCHHHHHHHHHHHCSSEEEE
T ss_pred             EEECHHHHHHHHHHCCCCEEEE
T ss_conf             9978999999986049966996


No 15 
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=30.11  E-value=19  Score=17.59  Aligned_cols=18  Identities=11%  Similarity=0.021  Sum_probs=15.2

Q ss_pred             EEEEECCHHHHHHHHHHC
Q ss_conf             499819989999999986
Q gi|254780174|r   28 VKLFFPSLEAAEKYASDH   45 (78)
Q Consensus        28 v~L~F~tkE~Ai~yA~~~   45 (78)
                      +--.|+|+++|.+|.+.+
T Consensus        34 ~~k~F~t~~eA~~fl~~~   51 (53)
T 3bsu_A           34 RFKKFATEDEAWAFVRKS   51 (53)
T ss_dssp             EEEEESSHHHHHHHHHC-
T ss_pred             EECCCCCHHHHHHHHHHC
T ss_conf             578859999999999706


No 16 
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=29.34  E-value=35  Score=16.00  Aligned_cols=20  Identities=15%  Similarity=0.175  Sum_probs=17.4

Q ss_pred             CEEEEEECCHHHHHHHHHHC
Q ss_conf             20499819989999999986
Q gi|254780174|r   26 QQVKLFFPSLEAAEKYASDH   45 (78)
Q Consensus        26 ~qv~L~F~tkE~Ai~yA~~~   45 (78)
                      .+|-..|++.|+.|++|+.-
T Consensus         1 ~~vi~~F~~fedvi~~a~~l   20 (91)
T 3jtn_A            1 ADIIYQFHSFEDIIQLSESL   20 (91)
T ss_dssp             -CEEEEESSHHHHHHHHHHH
T ss_pred             CCEEEEECCHHHHHHHHHHC
T ss_conf             92999919999999999863


No 17 
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=28.95  E-value=25  Score=16.97  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=14.4

Q ss_pred             CCHHHHHHHHHHCCCCEEEE
Q ss_conf             99899999999869848995
Q gi|254780174|r   33 PSLEAAEKYASDHGIQYCVI   52 (78)
Q Consensus        33 ~tkE~Ai~yA~~~g~~y~V~   52 (78)
                      -++++|..||++||+.+.=+
T Consensus       176 ~~~~~~~~fA~~~~l~~i~i  195 (204)
T 1tks_A          176 MRLDDCIQFGKKHGIKIINI  195 (204)
T ss_dssp             CBHHHHHHHHHHHTCCEEEH
T ss_pred             CCHHHHHHHHHHCCCCEEEH
T ss_conf             58899999999849969989


No 18 
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=28.67  E-value=37  Score=15.90  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=14.0

Q ss_pred             EECCHHHHHHHHHHCCCCEEEEC
Q ss_conf             81998999999998698489956
Q gi|254780174|r   31 FFPSLEAAEKYASDHGIQYCVIP   53 (78)
Q Consensus        31 ~F~tkE~Ai~yA~~~g~~y~V~~   53 (78)
                      .|.+.|+|.+|++..|+++.|..
T Consensus       122 ~~~~~~ea~~~~~~~g~P~VIKp  144 (424)
T 2yw2_A          122 VFTDFEKAKEYVEKVGAPIVVKA  144 (424)
T ss_dssp             EESCHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             55619999999986499789985


No 19 
>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} SCOP: d.58.4.12
Probab=27.99  E-value=38  Score=15.82  Aligned_cols=45  Identities=16%  Similarity=0.131  Sum_probs=26.7

Q ss_pred             CCCCCCCCC-EEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCH
Q ss_conf             302777652-04998199899999999869848995677677556556
Q gi|254780174|r   18 YTSSKDTLQ-QVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSY   64 (78)
Q Consensus        18 Wtss~Dt~~-qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~~~ksY   64 (78)
                      |+++.++.. .=...|+|+|+|.+|++.+  .-++..+.-..++.|.|
T Consensus        63 w~~n~~~~~~GGvYlF~s~e~Ae~Y~e~h--~arl~~~gv~~v~~kiF  108 (123)
T 2asy_A           63 WTESEKNHEAGGIYLFTDEKSALAYLEKH--TARLKNLGVEEVVAKVF  108 (123)
T ss_dssp             CBCBTTTTEEEEEEEESCHHHHHHHHHHH--HHHHHHHSSSCCBCCBC
T ss_pred             EEECCCCCEEEEEEEECCHHHHHHHHHHH--HHHHHCCCCCCEEEEEE
T ss_conf             86448988842799978999999999999--99985589873377997


No 20 
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3h07_A
Probab=27.90  E-value=33  Score=16.19  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=17.9

Q ss_pred             ECCHHHHHHHHHHCCCCEEEECC
Q ss_conf             19989999999986984899567
Q gi|254780174|r   32 FPSLEAAEKYASDHGIQYCVIPS   54 (78)
Q Consensus        32 F~tkE~Ai~yA~~~g~~y~V~~p   54 (78)
                      -..+++|..||++||+.+.-++.
T Consensus       182 ~~~~~~~~~fA~~~~l~~isi~d  204 (217)
T 1g57_A          182 MARAPECIEFANKHNMALVTIED  204 (217)
T ss_dssp             BCCHHHHHHHHHHTTCEEEEHHH
T ss_pred             CCCHHHHHHHHHHCCCCEEEHHH
T ss_conf             26889999999983997998999


No 21 
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=26.83  E-value=33  Score=16.20  Aligned_cols=39  Identities=13%  Similarity=0.215  Sum_probs=28.0

Q ss_pred             CCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf             652049981998999999998698489956776775565
Q gi|254780174|r   24 TLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKEL   62 (78)
Q Consensus        24 t~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~~~k   62 (78)
                      +-..|-+.=.-.+.|..+|+..||+|....|.++..+.+
T Consensus       202 ~VrGIlvA~~it~~a~~ll~~~Gie~~~~~p~k~l~~~~  240 (251)
T 2vld_A          202 NVRGILVAPSLTEGAKKLLEKEGLEFRKLEPPKKGNEKR  240 (251)
T ss_dssp             CEEEEEEESCBCHHHHHHHHHHTCEEEECCCC-------
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf             826999868699899999997897799968326654212


No 22 
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=26.81  E-value=38  Score=15.77  Aligned_cols=28  Identities=21%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             CCCCCCCCC-EEEEEECCHHHHHHHHHHC
Q ss_conf             302777652-0499819989999999986
Q gi|254780174|r   18 YTSSKDTLQ-QVKLFFPSLEAAEKYASDH   45 (78)
Q Consensus        18 Wtss~Dt~~-qv~L~F~tkE~Ai~yA~~~   45 (78)
                      |+++.++.. .=...|+|+|+|.+|.+.+
T Consensus        48 w~~~~~~~~~GGvY~f~s~~~ae~y~~~h   76 (113)
T 2hiq_A           48 WTESEKNHEAGGIYLFTDEKSALAYLEKH   76 (113)
T ss_dssp             EEEETTTTEEEEEEEESSHHHHHHHHHHH
T ss_pred             EEECCCCCEEEEEEEECCHHHHHHHHHHH
T ss_conf             87628889872899978999999999999


No 23 
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=26.78  E-value=28  Score=16.60  Aligned_cols=17  Identities=18%  Similarity=0.370  Sum_probs=14.2

Q ss_pred             HHHHHHCCCCEEEECCC
Q ss_conf             99999869848995677
Q gi|254780174|r   39 EKYASDHGIQYCVIPSC   55 (78)
Q Consensus        39 i~yA~~~g~~y~V~~p~   55 (78)
                      ..||+++||.++|+.-.
T Consensus       153 ~ryAE~kgwk~evid~~  169 (365)
T 1gqe_A          153 LRWAESRGFKTEIIEES  169 (365)
T ss_dssp             HHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHCCCEEEEEECC
T ss_conf             99999859925898616


No 24 
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=25.76  E-value=27  Score=16.74  Aligned_cols=14  Identities=29%  Similarity=0.384  Sum_probs=11.8

Q ss_pred             EEEEECCHHHHHHH
Q ss_conf             49981998999999
Q gi|254780174|r   28 VKLFFPSLEAAEKY   41 (78)
Q Consensus        28 v~L~F~tkE~Ai~y   41 (78)
                      +--+|+|+++|.+|
T Consensus        32 ~~k~F~t~~eA~~~   45 (47)
T 1qhk_A           32 IYKKFNSYEQAKSF   45 (47)
T ss_dssp             CCEEESCHHHHHHH
T ss_pred             EECCCCCHHHHHHH
T ss_conf             48886999999996


No 25 
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=24.43  E-value=44  Score=15.42  Aligned_cols=19  Identities=21%  Similarity=0.305  Sum_probs=15.6

Q ss_pred             CEEEEEECCHHHHHHHHHH
Q ss_conf             2049981998999999998
Q gi|254780174|r   26 QQVKLFFPSLEAAEKYASD   44 (78)
Q Consensus        26 ~qv~L~F~tkE~Ai~yA~~   44 (78)
                      ...-|.|.|.++|-.|+++
T Consensus        89 ~~~GLnF~se~eA~~F~~~  107 (118)
T 1xod_A           89 KKFGLTFQSPADARAFDRG  107 (118)
T ss_dssp             EEEEEEESSHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHH
T ss_conf             7999731998999999999


No 26 
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=24.33  E-value=44  Score=15.41  Aligned_cols=19  Identities=21%  Similarity=0.305  Sum_probs=16.1

Q ss_pred             CEEEEEECCHHHHHHHHHH
Q ss_conf             2049981998999999998
Q gi|254780174|r   26 QQVKLFFPSLEAAEKYASD   44 (78)
Q Consensus        26 ~qv~L~F~tkE~Ai~yA~~   44 (78)
                      .+.-|.|.+.++|-.|++.
T Consensus        98 ~~~GLnFase~eA~~F~~~  116 (126)
T 2jp2_A           98 RKFGLTFQSPADARAFDRG  116 (126)
T ss_dssp             SEEEEEESSHHHHHHHHHH
T ss_pred             EEEEEEECCHHHHHHHHHH
T ss_conf             8999730998999999999


No 27 
>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2}
Probab=23.57  E-value=30  Score=16.46  Aligned_cols=29  Identities=10%  Similarity=0.009  Sum_probs=18.3

Q ss_pred             EEEEECCHHHHHHHHHHCCCC-EEEECCCC
Q ss_conf             499819989999999986984-89956776
Q gi|254780174|r   28 VKLFFPSLEAAEKYASDHGIQ-YCVIPSCK   56 (78)
Q Consensus        28 v~L~F~tkE~Ai~yA~~~g~~-y~V~~p~~   56 (78)
                      +...=.|.++|++||.|.|=- .+.-+|..
T Consensus        82 ~E~~rGt~~q~~~YC~Keg~~~~e~G~p~~  111 (115)
T 2hw0_A           82 IEKAKGTDQQNKEYCSKEGNLLMECGAPRS  111 (115)
T ss_dssp             EECCCSCHHHHHHHHHTTSCEEEEEECCCC
T ss_pred             EEECCCCHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             998379989999871288961887044278


No 28 
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}
Probab=22.54  E-value=44  Score=15.38  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=17.8

Q ss_pred             ECCHHHHHHHHHHCCCCEEEECC
Q ss_conf             19989999999986984899567
Q gi|254780174|r   32 FPSLEAAEKYASDHGIQYCVIPS   54 (78)
Q Consensus        32 F~tkE~Ai~yA~~~g~~y~V~~p   54 (78)
                      ..+-..-|.||.++||+|.+++.
T Consensus       308 ~~~~k~yiDfaa~~G~eYvliD~  330 (641)
T 3a24_A          308 NPTYKAYIDFASANGIEYVILDE  330 (641)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECT
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             78899999999986997899994


No 29 
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8}
Probab=22.41  E-value=48  Score=15.18  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHCCCCEEEECC
Q ss_conf             89999999986984899567
Q gi|254780174|r   35 LEAAEKYASDHGIQYCVIPS   54 (78)
Q Consensus        35 kE~Ai~yA~~~g~~y~V~~p   54 (78)
                      .++-+.||+++++++.|..|
T Consensus        50 ~~~i~~~~~~~~idlvivGp   69 (417)
T 2ip4_A           50 VEALADWALAEGIDLTLVGP   69 (417)
T ss_dssp             HHHHHHHHHHHTCCEEEECS
T ss_pred             HHHHHHHHHHHCCCEEEECC
T ss_conf             99999999985999999897


No 30 
>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens}
Probab=22.36  E-value=48  Score=15.17  Aligned_cols=28  Identities=11%  Similarity=0.278  Sum_probs=15.7

Q ss_pred             EEEEECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf             4998199899999999869848995677
Q gi|254780174|r   28 VKLFFPSLEAAEKYASDHGIQYCVIPSC   55 (78)
Q Consensus        28 v~L~F~tkE~Ai~yA~~~g~~y~V~~p~   55 (78)
                      +.+.-.+.++-++||+++.+++.|+.|-
T Consensus        70 ~~i~~~d~~~i~~~~~~~~iDlvivGpE   97 (452)
T 2qk4_A           70 TAISISDHTALAQFCKEKKIEFVVVGPE   97 (452)
T ss_dssp             CCCCSSCHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf             4658679999999999859999998973


No 31 
>3oir_A Sulfate transporter sulfate transporter family PR; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; HET: MSE; 1.85A {Wolinella succinogenes}
Probab=21.19  E-value=38  Score=15.77  Aligned_cols=15  Identities=27%  Similarity=0.332  Sum_probs=11.4

Q ss_pred             EECCHHHHHHHHHHC
Q ss_conf             819989999999986
Q gi|254780174|r   31 FFPSLEAAEKYASDH   45 (78)
Q Consensus        31 ~F~tkE~Ai~yA~~~   45 (78)
                      .|+|.++|+.+|+..
T Consensus       114 if~t~~~Al~~a~~~  128 (135)
T 3oir_A          114 VFDHIDKALAYAKLL  128 (135)
T ss_dssp             BCSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             449999999999998


No 32 
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=20.63  E-value=52  Score=14.95  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=23.2

Q ss_pred             CCCCCCCCCEEEEEEC--------CHHHHHHHHHHCCCCEEEE
Q ss_conf             3027776520499819--------9899999999869848995
Q gi|254780174|r   18 YTSSKDTLQQVKLFFP--------SLEAAEKYASDHGIQYCVI   52 (78)
Q Consensus        18 Wtss~Dt~~qv~L~F~--------tkE~Ai~yA~~~g~~y~V~   52 (78)
                      ||..++.+++++|.+.        +.|+++.-|.+.|++.+=+
T Consensus        13 ~t~~~~~~~~~~i~~~~~tl~~~~~lee~l~~aae~GfdgVEl   55 (296)
T 2g0w_A           13 MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGL   55 (296)
T ss_dssp             ---------CCCEEECGGGGTTTSCHHHHHHHHHHTTCSEEEE
T ss_pred             HHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             3246687477884788888789999999999999969799997


No 33 
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=20.22  E-value=53  Score=14.90  Aligned_cols=17  Identities=29%  Similarity=0.284  Sum_probs=14.5

Q ss_pred             EEEECCHHHHHHHHHHC
Q ss_conf             99819989999999986
Q gi|254780174|r   29 KLFFPSLEAAEKYASDH   45 (78)
Q Consensus        29 ~L~F~tkE~Ai~yA~~~   45 (78)
                      -|-|.+.++|..|++.-
T Consensus        92 GLnFase~eA~~F~~~v  108 (168)
T 1i2h_A           92 GLGFSSEHHLSKFAEKF  108 (168)
T ss_dssp             EEEESSHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHH
T ss_conf             63249989999999999


Done!