Query gi|254780174|ref|YP_003064587.1| putative oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs 103 out of 452
Neff 4.8
Searched_HMMs 13730
Date Mon May 23 08:48:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780174.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k92a1 c.26.2.1 (A:1-188) Arg 71.1 0.83 6.1E-05 24.5 1.7 25 30-54 163-187 (188)
2 d2hpua1 d.357.1.1 (A:35-160) N 51.2 4.2 0.0003 20.2 2.3 25 24-48 74-99 (126)
3 d2fiua1 d.58.4.16 (A:1-95) Hyp 41.3 11 0.00078 17.7 3.1 29 11-43 42-70 (95)
4 d1tifa_ d.15.8.1 (A:) Translat 37.6 11 0.00082 17.6 2.8 36 30-65 24-61 (76)
5 d1tksa_ d.115.1.2 (A:) 3,4-dih 29.1 14 0.001 17.0 2.1 21 33-53 174-194 (202)
6 d1gsoa3 d.142.1.2 (A:104-327) 29.0 13 0.00097 17.1 2.0 25 30-54 20-44 (224)
7 d1g57a_ d.115.1.2 (A:) 3,4-dih 27.9 19 0.0014 16.2 2.6 21 33-53 179-199 (209)
8 d1qhka_ d.100.1.2 (A:) N-termi 27.7 14 0.00098 17.1 1.8 14 28-41 32-45 (47)
9 d1gqea_ e.38.1.1 (A:) Polypept 24.8 19 0.0014 16.2 2.1 17 39-55 150-166 (362)
10 d2hiqa1 d.58.4.12 (A:9-104) Hy 24.7 25 0.0018 15.4 2.8 28 18-45 40-68 (96)
11 d1vl2a1 c.26.2.1 (A:2-169) Arg 23.9 11 0.00082 17.6 0.8 18 31-48 150-167 (168)
12 d1t0fa2 c.52.1.16 (A:7-168) Tn 23.5 26 0.0019 15.3 2.8 21 35-55 140-160 (162)
13 d1snna_ d.115.1.2 (A:) 3,4-dih 22.9 24 0.0017 15.6 2.4 20 33-52 193-212 (219)
14 d1gsoa2 c.30.1.1 (A:-2-103) Gl 22.6 27 0.002 15.2 3.5 29 28-56 48-76 (105)
15 d1i2ha_ b.55.1.4 (A:) Homer {R 22.5 27 0.0019 15.3 2.5 23 23-45 81-105 (145)
16 d3ceda1 d.58.18.13 (A:247-341) 22.2 28 0.002 15.1 2.8 30 24-53 59-93 (95)
17 d1xoda1 b.55.1.4 (A:10-123) Sp 21.9 28 0.0021 15.1 3.1 19 26-44 85-103 (114)
18 d1k4ia_ d.115.1.2 (A:) 3,4-dih 21.7 29 0.0021 15.1 2.6 23 31-53 181-203 (216)
19 d1j20a1 c.26.2.1 (A:1-165) Arg 21.4 21 0.0015 15.9 1.8 19 30-48 145-163 (165)
No 1
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=71.14 E-value=0.83 Score=24.52 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=20.4
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 9819989999999986984899567
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPS 54 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p 54 (78)
+.|.||++=++||++|||+|.....
T Consensus 163 ~~~~sk~ei~~ya~~~gi~~~~~~~ 187 (188)
T d1k92a1 163 DELGGRHEMSEFMIACGFDYKMSVE 187 (188)
T ss_dssp HHSSSHHHHHHHHHHTTCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 1369999999999984999999888
No 2
>d2hpua1 d.357.1.1 (A:35-160) NosL {Achromobacter cycloclastes [TaxId: 223]}
Probab=51.22 E-value=4.2 Score=20.22 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.1
Q ss_pred CCCE-EEEEECCHHHHHHHHHHCCCC
Q ss_conf 6520-499819989999999986984
Q gi|254780174|r 24 TLQQ-VKLFFPSLEAAEKYASDHGIQ 48 (78)
Q Consensus 24 t~~q-v~L~F~tkE~Ai~yA~~~g~~ 48 (78)
+|.. -.+-|.++++|.+|++++|=.
T Consensus 74 pMg~~~l~~F~~~~dA~~F~~~~GG~ 99 (126)
T d2hpua1 74 GMGAPEAVPFSSRDEAAAFVLAEGGQ 99 (126)
T ss_dssp SSSCCCEEEESCHHHHHHHHHHTEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCE
T ss_conf 79886423768999999999982999
No 3
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=41.27 E-value=11 Score=17.71 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 207773630277765204998199899999999
Q gi|254780174|r 11 YIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYAS 43 (78)
Q Consensus 11 ~~dpLMGWtss~Dt~~qv~L~F~tkE~Ai~yA~ 43 (78)
..+.|-|. +...-|-+.|+|+|+|.+|-.
T Consensus 42 ~~~~~EG~----~~~~~viieFps~e~A~~~~~ 70 (95)
T d2fiua1 42 SVTELEGT----ARARNVVIEFPSVQHAIDCYN 70 (95)
T ss_dssp CEEEEESC----CCSEEEEEEESSHHHHHHHHH
T ss_pred CEEEECCC----CCCEEEEEECCCHHHHHHHHC
T ss_conf 25886489----975189998499999998978
No 4
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=37.57 E-value=11 Score=17.56 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=25.4
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCCCCCC--CCCCHH
Q ss_conf 981998999999998698489956776775--565565
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSCKESQ--KELSYQ 65 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~--~~ksYa 65 (78)
|---+.++|+..|+..|++...+-|..... +.-.|+
T Consensus 24 lGv~~~~eAl~~A~~~glDLV~vs~~a~PPVcKi~dyg 61 (76)
T d1tifa_ 24 LGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYG 61 (76)
T ss_dssp EEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHH
T ss_pred ECEECHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCH
T ss_conf 67042999999999819987984577899889997625
No 5
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]}
Probab=29.10 E-value=14 Score=16.99 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEC
Q ss_conf 998999999998698489956
Q gi|254780174|r 33 PSLEAAEKYASDHGIQYCVIP 53 (78)
Q Consensus 33 ~tkE~Ai~yA~~~g~~y~V~~ 53 (78)
.++++|+.||++||+.+.-++
T Consensus 174 ~~~~~~~~fA~~~~l~~isi~ 194 (202)
T d1tksa_ 174 MRLDDCIQFGKKHGIKIININ 194 (202)
T ss_dssp CBHHHHHHHHHHHTCCEEEHH
T ss_pred CCHHHHHHHHHHCCCCEEEHH
T ss_conf 489999999998599799899
No 6
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Probab=29.01 E-value=13 Score=17.12 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 9819989999999986984899567
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPS 54 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p 54 (78)
..|.+.++|.+|+++.|.++.|...
T Consensus 20 ~~~~~~~ea~~~~~~~~~P~VvK~~ 44 (224)
T d1gsoa3 20 QNFTEVEPALAYLREKGAPIVIKAD 44 (224)
T ss_dssp EEESSSSHHHHHHHHHCSSEEEEC-
T ss_pred EEECCHHHHHHHHHHCCCCEEEEEC
T ss_conf 6868999999999974998899837
No 7
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]}
Probab=27.91 E-value=19 Score=16.19 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHCCCCEEEEC
Q ss_conf 998999999998698489956
Q gi|254780174|r 33 PSLEAAEKYASDHGIQYCVIP 53 (78)
Q Consensus 33 ~tkE~Ai~yA~~~g~~y~V~~ 53 (78)
...++|..||++||+.+.-++
T Consensus 179 ~~~~~~~~fA~~~~l~~isi~ 199 (209)
T d1g57a_ 179 ARAPECIEFANKHNMALVTIE 199 (209)
T ss_dssp CCHHHHHHHHHHTTCEEEEHH
T ss_pred CCHHHHHHHHHHCCCCEEEHH
T ss_conf 688999999998499799899
No 8
>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.71 E-value=14 Score=17.09 Aligned_cols=14 Identities=29% Similarity=0.384 Sum_probs=11.9
Q ss_pred EEEEECCHHHHHHH
Q ss_conf 49981998999999
Q gi|254780174|r 28 VKLFFPSLEAAEKY 41 (78)
Q Consensus 28 v~L~F~tkE~Ai~y 41 (78)
+--+|+|+++|.+|
T Consensus 32 ~~k~F~t~~eA~~~ 45 (47)
T d1qhka_ 32 IYKKFNSYEQAKSF 45 (47)
T ss_dssp CCEEESCHHHHHHH
T ss_pred EECCCCCHHHHHHH
T ss_conf 28886999999996
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=24.79 E-value=19 Score=16.24 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.2
Q ss_pred HHHHHHCCCCEEEECCC
Q ss_conf 99999869848995677
Q gi|254780174|r 39 EKYASDHGIQYCVIPSC 55 (78)
Q Consensus 39 i~yA~~~g~~y~V~~p~ 55 (78)
..||+++||.++|+.-.
T Consensus 150 ~r~ae~~gwk~eiid~~ 166 (362)
T d1gqea_ 150 LRWAESRGFKTEIIEES 166 (362)
T ss_dssp HHHHHHTTCEEEEEEEE
T ss_pred HHHHHHCCCEEEEECCC
T ss_conf 99999759858994145
No 10
>d2hiqa1 d.58.4.12 (A:9-104) Hypothetical protein YdhR {Escherichia coli [TaxId: 562]}
Probab=24.66 E-value=25 Score=15.45 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=21.6
Q ss_pred CCCCCCCCC-EEEEEECCHHHHHHHHHHC
Q ss_conf 302777652-0499819989999999986
Q gi|254780174|r 18 YTSSKDTLQ-QVKLFFPSLEAAEKYASDH 45 (78)
Q Consensus 18 Wtss~Dt~~-qv~L~F~tkE~Ai~yA~~~ 45 (78)
|+++.++.. .=...|+|+|+|.+|.+.+
T Consensus 40 ~~~~~~~~~~GGvY~f~s~e~ae~y~~~~ 68 (96)
T d2hiqa1 40 WTESEKNHEAGGIYLFTDEKSALAYLEKH 68 (96)
T ss_dssp EEEETTTTEEEEEEEESSHHHHHHHHHHH
T ss_pred EEECCCCCEEEEEEEECCHHHHHHHHHHH
T ss_conf 87608889885899978999999999999
No 11
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.86 E-value=11 Score=17.58 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.1
Q ss_pred EECCHHHHHHHHHHCCCC
Q ss_conf 819989999999986984
Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQ 48 (78)
Q Consensus 31 ~F~tkE~Ai~yA~~~g~~ 48 (78)
.|.||++-++||+++||+
T Consensus 150 ~~~sk~ei~~ya~~~~iP 167 (168)
T d1vl2a1 150 KFKGRTDLINYAMEKGIP 167 (168)
T ss_dssp HTC--CHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHCCCC
T ss_conf 479999999999984999
No 12
>d1t0fa2 c.52.1.16 (A:7-168) TnsA endonuclease, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.46 E-value=26 Score=15.31 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCCEEEECCC
Q ss_conf 899999999869848995677
Q gi|254780174|r 35 LEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 35 kE~Ai~yA~~~g~~y~V~~p~ 55 (78)
.|.+-.||+.+|++|.|+..+
T Consensus 140 leier~yw~~~Gi~~~ivTE~ 160 (162)
T d1t0fa2 140 LELERRYWQQKQIPWFIFTDK 160 (162)
T ss_dssp HHHHHHHHHHHTCCEEEECGG
T ss_pred HHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999849948997367
No 13
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=22.94 E-value=24 Score=15.56 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999999869848995
Q gi|254780174|r 33 PSLEAAEKYASDHGIQYCVI 52 (78)
Q Consensus 33 ~tkE~Ai~yA~~~g~~y~V~ 52 (78)
-+.+++.+||+++||.+.-+
T Consensus 193 ~~~~~~~~fA~~~~l~~isi 212 (219)
T d1snna_ 193 MSKNETKRYAEKHNLIYLSG 212 (219)
T ss_dssp CCHHHHHHHHHHHTCCEEEH
T ss_pred CCHHHHHHHHHHCCCCEEEH
T ss_conf 58899999999849979989
No 14
>d1gsoa2 c.30.1.1 (A:-2-103) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Escherichia coli [TaxId: 562]}
Probab=22.62 E-value=27 Score=15.21 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=23.6
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 49981998999999998698489956776
Q gi|254780174|r 28 VKLFFPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 28 v~L~F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
+.+...+.++-+.||+++++++.|+-|-.
T Consensus 48 ~~~~~~d~~~i~~~a~~~~idlvviGPE~ 76 (105)
T d1gsoa2 48 VAIGVTDIPALLDFAQNEKIDLTIVGPEA 76 (105)
T ss_dssp CCCCTTCHHHHHHHHHHTTCSEEEECSHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCHH
T ss_conf 55435768999989998296889977088
No 15
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.45 E-value=27 Score=15.29 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=16.2
Q ss_pred CCCC-EE-EEEECCHHHHHHHHHHC
Q ss_conf 7652-04-99819989999999986
Q gi|254780174|r 23 DTLQ-QV-KLFFPSLEAAEKYASDH 45 (78)
Q Consensus 23 Dt~~-qv-~L~F~tkE~Ai~yA~~~ 45 (78)
|... +| -|.|.|.++|-.|++.-
T Consensus 81 d~r~~~V~GL~F~s~~da~~F~~~~ 105 (145)
T d1i2ha_ 81 DSRANTVYGLGFSSEHHLSKFAEKF 105 (145)
T ss_dssp ETTTTEEEEEEESSHHHHHHHHHHH
T ss_pred ECCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 0555515611559989999999999
No 16
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Probab=22.16 E-value=28 Score=15.15 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=23.1
Q ss_pred CCCEEEEEEC--C---HHHHHHHHHHCCCCEEEEC
Q ss_conf 6520499819--9---8999999998698489956
Q gi|254780174|r 24 TLQQVKLFFP--S---LEAAEKYASDHGIQYCVIP 53 (78)
Q Consensus 24 t~~qv~L~F~--t---kE~Ai~yA~~~g~~y~V~~ 53 (78)
+...+-+.+. . .++|++|.+.+|+..+|+.
T Consensus 59 ~~G~Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~ 93 (95)
T d3ceda1 59 TVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR 93 (95)
T ss_dssp EEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 38999999866998999999999998698899936
No 17
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}
Probab=21.89 E-value=28 Score=15.12 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.0
Q ss_pred CEEEEEECCHHHHHHHHHH
Q ss_conf 2049981998999999998
Q gi|254780174|r 26 QQVKLFFPSLEAAEKYASD 44 (78)
Q Consensus 26 ~qv~L~F~tkE~Ai~yA~~ 44 (78)
.+.-|.|.+.++|-.|+++
T Consensus 85 ~~~GL~F~se~eA~~F~~~ 103 (114)
T d1xoda1 85 KKFGLTFQSPADARAFDRG 103 (114)
T ss_dssp EEEEEEESSHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHH
T ss_conf 7999851988999999999
No 18
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]}
Probab=21.74 E-value=29 Score=15.10 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=18.4
Q ss_pred EECCHHHHHHHHHHCCCCEEEEC
Q ss_conf 81998999999998698489956
Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQYCVIP 53 (78)
Q Consensus 31 ~F~tkE~Ai~yA~~~g~~y~V~~ 53 (78)
.-..++++..||++|++.+.-++
T Consensus 181 ~ma~~~~l~~fA~~h~l~~i~i~ 203 (216)
T d1k4ia_ 181 GMLRGDECVAFARRWGLKVCTIE 203 (216)
T ss_dssp EECCHHHHHHHHHHTTCEEEEHH
T ss_pred CCCCHHHHHHHHHHCCCCEEEHH
T ss_conf 11351999999998299698899
No 19
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.39 E-value=21 Score=15.89 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=15.7
Q ss_pred EEECCHHHHHHHHHHCCCC
Q ss_conf 9819989999999986984
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQ 48 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~ 48 (78)
|.+-||++-++||+++||+
T Consensus 145 l~~~~k~ei~~ya~~~~iP 163 (165)
T d1j20a1 145 WSFQGRKEMIAYAEAHGIP 163 (165)
T ss_dssp CCCCSHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHCCC
T ss_conf 6799899999999992889
Done!