Query         gi|254780175|ref|YP_003064588.1| hypothetical protein CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 23 06:45:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780175.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2rm9_A Astressin2B; CRF ligand  35.5     4.8  0.0002   19.7  -0.7   23    2-25     11-33  (34)
  2 3f4y_D Mutant peptide derived   13.1      68  0.0029   13.9   1.6   17    6-22     21-37  (40)
  3 1kjn_A MTH0777; hypotethical p   9.9      82  0.0035   13.5   1.1   18   16-33    140-157 (157)
  4 3gwo_A Envelope glycoprotein G   7.3 1.3E+02  0.0055   12.5   1.8   16   11-27     21-36  (54)
  5 3bpq_A RELB; protein toxin-ant   5.2 1.4E+02  0.0057   12.4   0.4   14   23-37     26-39  (52)
  6 1x4t_A Hypothetical protein LO   4.8 1.9E+02   0.008   11.7   1.2   27    4-34     44-70  (92)
  7 1z0j_B FYVE-finger-containing    4.1 2.2E+02   0.009   11.4   1.5   12   12-23     15-26  (59)
  8 1f45_B Interleukin-12 alpha ch   3.7 2.3E+02  0.0097   11.2   1.3   19   13-31    129-147 (197)
  9 1r71_A Transcriptional repress   3.2 2.6E+02   0.011   11.0   0.7   13    7-19     25-37  (178)
 10 1rh7_A Relmbeta, resistin-like   2.9 2.3E+02  0.0097   11.3  -0.1   15   24-38      2-16  (81)

No 1  
>2rm9_A Astressin2B; CRF ligand, sauvagine, urocortins, urotensins, CRF receptors, neuropeptide; HET: DPN 2ML NLE; NMR {Synthetic}
Probab=35.51  E-value=4.8  Score=19.67  Aligned_cols=23  Identities=48%  Similarity=0.573  Sum_probs=17.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             247888867666566789999999
Q gi|254780175|r    2 TDIAKAQIKENQQRDNHKALLASI   25 (38)
Q Consensus         2 tdiakaqikenqqrdnhkallasi   25 (38)
                      ..|. .|-||.||..|.+-||..|
T Consensus        11 ieie-kqekekqqa~nn~llldti   33 (34)
T 2rm9_A           11 IEIE-KQEKEKQQAENNKLLLDXI   33 (34)
T ss_dssp             TTHH-HHHSSSSSSTTTHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHCCCHHHHHC
T ss_conf             9999-9888898876244257514


No 2  
>3f4y_D Mutant peptide derived from HIV GP41 CHR domain; helix bundle, AIDS, apoptosis, cell membrane, cleavage on PAIR of basic residues, coiled coil; 2.00A {Synthetic} PDB: 3g7a_B* 3f4z_A* 3f50_B*
Probab=13.12  E-value=68  Score=13.90  Aligned_cols=17  Identities=29%  Similarity=0.282  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             88867666566789999
Q gi|254780175|r    6 KAQIKENQQRDNHKALL   22 (38)
Q Consensus         6 kaqikenqqrdnhkall   22 (38)
                      +-|-...||..|.+||+
T Consensus        21 ~i~~aq~qqe~ne~al~   37 (40)
T 3f4y_D           21 LIRAAQEQQEKNEAALR   37 (40)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999988887799998


No 3  
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=9.93  E-value=82  Score=13.49  Aligned_cols=18  Identities=39%  Similarity=0.512  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             678999999999974454
Q gi|254780175|r   16 DNHKALLASIDKVMSEKT   33 (38)
Q Consensus        16 dnhkallasidkvmsekt   33 (38)
                      .|-..|.-.||+||+||.
T Consensus       140 HNP~pl~~kidkvl~e~~  157 (157)
T 1kjn_A          140 HNPAPLRVRIDRFMEEKP  157 (157)
T ss_dssp             SCCHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHCCCC
T ss_conf             586878999999851499


No 4  
>3gwo_A Envelope glycoprotein GP160; viral membrane fusion, HIV-1, envelope protein, neutralizing antibodies, AIDS, apoptosis; HET: JEF; 1.65A {Human immunodeficiency virus type 1LW12} PDB: 3h01_A 3h00_A 1aik_C 2zzo_C 1fav_C* 3aha_B 2pv6_A
Probab=7.27  E-value=1.3e+02  Score=12.47  Aligned_cols=16  Identities=50%  Similarity=0.754  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             66656678999999999
Q gi|254780175|r   11 ENQQRDNHKALLASIDK   27 (38)
Q Consensus        11 enqqrdnhkallasidk   27 (38)
                      .+||..|.+.||+ .|+
T Consensus        21 q~QQekNe~~Ll~-Ldk   36 (54)
T 3gwo_A           21 QNQQEKNEQELLE-LDK   36 (54)
T ss_dssp             HHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHH-HCC
T ss_conf             9779986999862-444


No 5  
>3bpq_A RELB; protein toxin-antitoxin complex; 2.20A {Methanococcus jannaschii}
Probab=5.19  E-value=1.4e+02  Score=12.40  Aligned_cols=14  Identities=57%  Similarity=0.790  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999999744543016
Q gi|254780175|r   23 ASIDKVMSEKTKDDE   37 (38)
Q Consensus        23 asidkvmsektkdde   37 (38)
                      ...-|.| |.|||||
T Consensus        26 i~l~kam-eetkdde   39 (52)
T 3bpq_A           26 IGLAKAM-EETKDDE   39 (52)
T ss_dssp             HHHHHHH-HTTTTCC
T ss_pred             HHHHHHH-HHCCCCH
T ss_conf             9999998-8615503


No 6  
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=4.75  E-value=1.9e+02  Score=11.68  Aligned_cols=27  Identities=37%  Similarity=0.473  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7888867666566789999999999744543
Q gi|254780175|r    4 IAKAQIKENQQRDNHKALLASIDKVMSEKTK   34 (38)
Q Consensus         4 iakaqikenqqrdnhkallasidkvmsektk   34 (38)
                      |-.+.+-|.|-||    |-..|.|.|.||-.
T Consensus        44 Iqn~~L~E~~IRd----LNDeINkL~rEK~~   70 (92)
T 1x4t_A           44 IQNAGLGEFRIRD----LNDEINKLLREKGH   70 (92)
T ss_dssp             HHHCCSCHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HCCCCCCHHHHHH----HHHHHHHHHHHHHH
T ss_conf             5089987899999----99999999999999


No 7  
>1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=4.08  E-value=2.2e+02  Score=11.40  Aligned_cols=12  Identities=50%  Similarity=0.346  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             665667899999
Q gi|254780175|r   12 NQQRDNHKALLA   23 (38)
Q Consensus        12 nqqrdnhkalla   23 (38)
                      -||-||-||..-
T Consensus        15 lqqidnikayif   26 (59)
T 1z0j_B           15 LQQIDNIKAYIF   26 (59)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999887899962


No 8  
>1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine complex; HET: NAG MAN; 2.80A {Homo sapiens} SCOP: a.26.1.1 PDB: 3hmx_B*
Probab=3.74  E-value=2.3e+02  Score=11.25  Aligned_cols=19  Identities=32%  Similarity=0.357  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             6566789999999999744
Q gi|254780175|r   13 QQRDNHKALLASIDKVMSE   31 (38)
Q Consensus        13 qqrdnhkallasidkvmse   31 (38)
                      +|.--+..+|++||..|-.
T Consensus       129 ~qi~Ld~~mL~aideLMQa  147 (197)
T 1f45_B          129 RQIFLDQNMLAVIDELMQA  147 (197)
T ss_dssp             CCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHH
T ss_conf             4233131699999999998


No 9  
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=3.23  E-value=2.6e+02  Score=10.98  Aligned_cols=13  Identities=38%  Similarity=0.460  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8867666566789
Q gi|254780175|r    7 AQIKENQQRDNHK   19 (38)
Q Consensus         7 aqikenqqrdnhk   19 (38)
                      +|+-||-||.+..
T Consensus        25 ~~l~EN~qR~~l~   37 (178)
T 1r71_A           25 DQVIENLQRNELT   37 (178)
T ss_dssp             HHHHHHHHTTCCC
T ss_pred             HHHHHHHCCCCCC
T ss_conf             9999986506899


No 10 
>1rh7_A Relmbeta, resistin-like beta; hormone, glucose uptake, resistin/FIZZ family, structural genomics, PSI, protein structure initiative; HET: P6G; 3.11A {Mus musculus} SCOP: g.77.1.1
Probab=2.91  E-value=2.3e+02  Score=11.26  Aligned_cols=15  Identities=13%  Similarity=0.388  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             999997445430169
Q gi|254780175|r   24 SIDKVMSEKTKDDEN   38 (38)
Q Consensus        24 sidkvmsektkdden   38 (38)
                      ++|.++.+|.|+.-+
T Consensus         2 ~~d~~v~~KIke~l~   16 (81)
T 1rh7_A            2 SFESLVDQRIKEALS   16 (81)
T ss_dssp             CTTHHHHHHHTTTST
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             778999999999985


Done!