Query gi|254780175|ref|YP_003064588.1| hypothetical protein CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 23 06:45:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780175.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2rm9_A Astressin2B; CRF ligand 35.5 4.8 0.0002 19.7 -0.7 23 2-25 11-33 (34) 2 3f4y_D Mutant peptide derived 13.1 68 0.0029 13.9 1.6 17 6-22 21-37 (40) 3 1kjn_A MTH0777; hypotethical p 9.9 82 0.0035 13.5 1.1 18 16-33 140-157 (157) 4 3gwo_A Envelope glycoprotein G 7.3 1.3E+02 0.0055 12.5 1.8 16 11-27 21-36 (54) 5 3bpq_A RELB; protein toxin-ant 5.2 1.4E+02 0.0057 12.4 0.4 14 23-37 26-39 (52) 6 1x4t_A Hypothetical protein LO 4.8 1.9E+02 0.008 11.7 1.2 27 4-34 44-70 (92) 7 1z0j_B FYVE-finger-containing 4.1 2.2E+02 0.009 11.4 1.5 12 12-23 15-26 (59) 8 1f45_B Interleukin-12 alpha ch 3.7 2.3E+02 0.0097 11.2 1.3 19 13-31 129-147 (197) 9 1r71_A Transcriptional repress 3.2 2.6E+02 0.011 11.0 0.7 13 7-19 25-37 (178) 10 1rh7_A Relmbeta, resistin-like 2.9 2.3E+02 0.0097 11.3 -0.1 15 24-38 2-16 (81) No 1 >2rm9_A Astressin2B; CRF ligand, sauvagine, urocortins, urotensins, CRF receptors, neuropeptide; HET: DPN 2ML NLE; NMR {Synthetic} Probab=35.51 E-value=4.8 Score=19.67 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=17.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 247888867666566789999999 Q gi|254780175|r 2 TDIAKAQIKENQQRDNHKALLASI 25 (38) Q Consensus 2 tdiakaqikenqqrdnhkallasi 25 (38) ..|. .|-||.||..|.+-||..| T Consensus 11 ieie-kqekekqqa~nn~llldti 33 (34) T 2rm9_A 11 IEIE-KQEKEKQQAENNKLLLDXI 33 (34) T ss_dssp TTHH-HHHSSSSSSTTTHHHHHHC T ss_pred HHHH-HHHHHHHHHHCCCHHHHHC T ss_conf 9999-9888898876244257514 No 2 >3f4y_D Mutant peptide derived from HIV GP41 CHR domain; helix bundle, AIDS, apoptosis, cell membrane, cleavage on PAIR of basic residues, coiled coil; 2.00A {Synthetic} PDB: 3g7a_B* 3f4z_A* 3f50_B* Probab=13.12 E-value=68 Score=13.90 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 88867666566789999 Q gi|254780175|r 6 KAQIKENQQRDNHKALL 22 (38) Q Consensus 6 kaqikenqqrdnhkall 22 (38) +-|-...||..|.+||+ T Consensus 21 ~i~~aq~qqe~ne~al~ 37 (40) T 3f4y_D 21 LIRAAQEQQEKNEAALR 37 (40) T ss_dssp HHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999988887799998 No 3 >1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1 Probab=9.93 E-value=82 Score=13.49 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 678999999999974454 Q gi|254780175|r 16 DNHKALLASIDKVMSEKT 33 (38) Q Consensus 16 dnhkallasidkvmsekt 33 (38) .|-..|.-.||+||+||. T Consensus 140 HNP~pl~~kidkvl~e~~ 157 (157) T 1kjn_A 140 HNPAPLRVRIDRFMEEKP 157 (157) T ss_dssp SCCHHHHHHHHHHHTTCC T ss_pred CCCHHHHHHHHHHHCCCC T ss_conf 586878999999851499 No 4 >3gwo_A Envelope glycoprotein GP160; viral membrane fusion, HIV-1, envelope protein, neutralizing antibodies, AIDS, apoptosis; HET: JEF; 1.65A {Human immunodeficiency virus type 1LW12} PDB: 3h01_A 3h00_A 1aik_C 2zzo_C 1fav_C* 3aha_B 2pv6_A Probab=7.27 E-value=1.3e+02 Score=12.47 Aligned_cols=16 Identities=50% Similarity=0.754 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 66656678999999999 Q gi|254780175|r 11 ENQQRDNHKALLASIDK 27 (38) Q Consensus 11 enqqrdnhkallasidk 27 (38) .+||..|.+.||+ .|+ T Consensus 21 q~QQekNe~~Ll~-Ldk 36 (54) T 3gwo_A 21 QNQQEKNEQELLE-LDK 36 (54) T ss_dssp HHHHHHHHHHHHH-HHH T ss_pred HHHHHHHHHHHHH-HCC T ss_conf 9779986999862-444 No 5 >3bpq_A RELB; protein toxin-antitoxin complex; 2.20A {Methanococcus jannaschii} Probab=5.19 E-value=1.4e+02 Score=12.40 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999999744543016 Q gi|254780175|r 23 ASIDKVMSEKTKDDE 37 (38) Q Consensus 23 asidkvmsektkdde 37 (38) ...-|.| |.||||| T Consensus 26 i~l~kam-eetkdde 39 (52) T 3bpq_A 26 IGLAKAM-EETKDDE 39 (52) T ss_dssp HHHHHHH-HTTTTCC T ss_pred HHHHHHH-HHCCCCH T ss_conf 9999998-8615503 No 6 >1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1 Probab=4.75 E-value=1.9e+02 Score=11.68 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7888867666566789999999999744543 Q gi|254780175|r 4 IAKAQIKENQQRDNHKALLASIDKVMSEKTK 34 (38) Q Consensus 4 iakaqikenqqrdnhkallasidkvmsektk 34 (38) |-.+.+-|.|-|| |-..|.|.|.||-. T Consensus 44 Iqn~~L~E~~IRd----LNDeINkL~rEK~~ 70 (92) T 1x4t_A 44 IQNAGLGEFRIRD----LNDEINKLLREKGH 70 (92) T ss_dssp HHHCCSCHHHHHH----HHHHHHHHHHHHHH T ss_pred HCCCCCCHHHHHH----HHHHHHHHHHHHHH T ss_conf 5089987899999----99999999999999 No 7 >1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1 Probab=4.08 E-value=2.2e+02 Score=11.40 Aligned_cols=12 Identities=50% Similarity=0.346 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 665667899999 Q gi|254780175|r 12 NQQRDNHKALLA 23 (38) Q Consensus 12 nqqrdnhkalla 23 (38) -||-||-||..- T Consensus 15 lqqidnikayif 26 (59) T 1z0j_B 15 LQQIDNIKAYIF 26 (59) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999887899962 No 8 >1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine complex; HET: NAG MAN; 2.80A {Homo sapiens} SCOP: a.26.1.1 PDB: 3hmx_B* Probab=3.74 E-value=2.3e+02 Score=11.25 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 6566789999999999744 Q gi|254780175|r 13 QQRDNHKALLASIDKVMSE 31 (38) Q Consensus 13 qqrdnhkallasidkvmse 31 (38) +|.--+..+|++||..|-. T Consensus 129 ~qi~Ld~~mL~aideLMQa 147 (197) T 1f45_B 129 RQIFLDQNMLAVIDELMQA 147 (197) T ss_dssp CCCSHHHHHHHHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHHHH T ss_conf 4233131699999999998 No 9 >1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1 Probab=3.23 E-value=2.6e+02 Score=10.98 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8867666566789 Q gi|254780175|r 7 AQIKENQQRDNHK 19 (38) Q Consensus 7 aqikenqqrdnhk 19 (38) +|+-||-||.+.. T Consensus 25 ~~l~EN~qR~~l~ 37 (178) T 1r71_A 25 DQVIENLQRNELT 37 (178) T ss_dssp HHHHHHHHTTCCC T ss_pred HHHHHHHCCCCCC T ss_conf 9999986506899 No 10 >1rh7_A Relmbeta, resistin-like beta; hormone, glucose uptake, resistin/FIZZ family, structural genomics, PSI, protein structure initiative; HET: P6G; 3.11A {Mus musculus} SCOP: g.77.1.1 Probab=2.91 E-value=2.3e+02 Score=11.26 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999997445430169 Q gi|254780175|r 24 SIDKVMSEKTKDDEN 38 (38) Q Consensus 24 sidkvmsektkdden 38 (38) ++|.++.+|.|+.-+ T Consensus 2 ~~d~~v~~KIke~l~ 16 (81) T 1rh7_A 2 SFESLVDQRIKEALS 16 (81) T ss_dssp CTTHHHHHHHTTTST T ss_pred CHHHHHHHHHHHHHH T ss_conf 778999999999985 Done!