Query gi|254780175|ref|YP_003064588.1| hypothetical protein CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Sun May 22 23:55:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780175.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kjna_ c.115.1.1 (A:) Hypothe 12.2 35 0.0026 14.1 1.1 18 16-33 135-152 (152)
2 d1f45b_ a.26.1.1 (B:) Heterodi 6.6 82 0.006 12.3 1.3 20 12-31 109-128 (178)
3 d1r71a_ a.4.14.1 (A:) Transcri 6.1 57 0.0042 13.1 0.1 13 7-19 3-15 (114)
4 d1nh2d1 a.32.1.1 (D:5-54) Smal 4.0 1.3E+02 0.0092 11.4 2.0 16 19-34 34-49 (50)
5 d1x4ta1 a.2.15.1 (A:7-86) Pre- 3.8 1.3E+02 0.0095 11.3 1.2 24 7-34 41-64 (80)
6 d1z0jb1 a.2.19.1 (B:734-784) F 3.7 1.4E+02 0.0099 11.2 1.5 12 12-23 7-18 (51)
7 d2foka4 c.52.1.12 (A:387-579) 3.5 1.1E+02 0.0083 11.6 0.1 11 8-18 102-112 (193)
8 d1rh7a_ g.77.1.1 (A:) Resistin 2.9 1.3E+02 0.0097 11.3 -0.1 12 25-36 3-14 (81)
9 d1mo6a2 d.48.1.1 (A:270-329) R 2.5 1.9E+02 0.014 10.5 1.4 20 12-31 31-50 (60)
10 d1xmeb2 f.17.2.1 (B:3-36) Bact 2.2 2E+02 0.015 10.3 1.0 6 18-23 6-11 (34)
No 1
>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.25 E-value=35 Score=14.12 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 678999999999974454
Q gi|254780175|r 16 DNHKALLASIDKVMSEKT 33 (38)
Q Consensus 16 dnhkallasidkvmsekt 33 (38)
.|-..|.--||+||+||.
T Consensus 135 HNP~pl~~kl~~v~~e~~ 152 (152)
T d1kjna_ 135 HNPAPLRVRIDRFMEEKP 152 (152)
T ss_dssp SCCHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHCCCC
T ss_conf 596779999999851599
No 2
>d1f45b_ a.26.1.1 (B:) Heterodimeric interleukin-12 alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.64 E-value=82 Score=12.30 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 66566789999999999744
Q gi|254780175|r 12 NQQRDNHKALLASIDKVMSE 31 (38)
Q Consensus 12 nqqrdnhkallasidkvmse 31 (38)
.+|.--+..+|++||..|-.
T Consensus 109 ~~qi~Ld~~mL~aIdeLMQa 128 (178)
T d1f45b_ 109 KRQIFLDQNMLAVIDELMQA 128 (178)
T ss_dssp TCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHH
T ss_conf 24344031799999999998
No 3
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=6.07 E-value=57 Score=13.08 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8867666566789
Q gi|254780175|r 7 AQIKENQQRDNHK 19 (38)
Q Consensus 7 aqikenqqrdnhk 19 (38)
.|+-||-||.+..
T Consensus 3 ~ql~EN~qR~~L~ 15 (114)
T d1r71a_ 3 DQVIENLQRNELT 15 (114)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHCCCCCC
T ss_conf 8999988406899
No 4
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.02 E-value=1.3e+02 Score=11.37 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999744543
Q gi|254780175|r 19 KALLASIDKVMSEKTK 34 (38)
Q Consensus 19 kallasidkvmsektk 34 (38)
...|...||+|++--+
T Consensus 34 ~kVL~qFDk~i~~aL~ 49 (50)
T d1nh2d1 34 MRVLETFDKVVAETLK 49 (50)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999998899999861
No 5
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.85 E-value=1.3e+02 Score=11.30 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8867666566789999999999744543
Q gi|254780175|r 7 AQIKENQQRDNHKALLASIDKVMSEKTK 34 (38)
Q Consensus 7 aqikenqqrdnhkallasidkvmsektk 34 (38)
+.+-|.|-|| |-..|.|.|.||-.
T Consensus 41 ~~L~e~~IRd----LNDeINkL~reK~~ 64 (80)
T d1x4ta1 41 AGLGEFRIRD----LNDEINKLLREKGH 64 (80)
T ss_dssp CCSCHHHHHH----HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH----HHHHHHHHHHHHHH
T ss_conf 9987799999----89999999999999
No 6
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.65 E-value=1.4e+02 Score=11.20 Aligned_cols=12 Identities=50% Similarity=0.346 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 665667899999
Q gi|254780175|r 12 NQQRDNHKALLA 23 (38)
Q Consensus 12 nqqrdnhkalla 23 (38)
-||-||-||..-
T Consensus 7 lqqidnikayif 18 (51)
T d1z0jb1 7 LQQIDNIKAYIF 18 (51)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999887899973
No 7
>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI, C-terminal (catalytic) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=3.48 E-value=1.1e+02 Score=11.59 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 86766656678
Q gi|254780175|r 8 QIKENQQRDNH 18 (38)
Q Consensus 8 qikenqqrdnh 18 (38)
-|++|++||.|
T Consensus 102 Yi~~n~~R~e~ 112 (193)
T d2foka4 102 YVEENQTRNKH 112 (193)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHCCCCCCC
T ss_conf 99860354544
No 8
>d1rh7a_ g.77.1.1 (A:) Resistin-like beta (FIZZ2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.91 E-value=1.3e+02 Score=11.26 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999974454301
Q gi|254780175|r 25 IDKVMSEKTKDD 36 (38)
Q Consensus 25 idkvmsektkdd 36 (38)
+|.++.+|.|+.
T Consensus 3 ~d~~v~~KIke~ 14 (81)
T d1rh7a_ 3 FESLVDQRIKEA 14 (81)
T ss_dssp TTHHHHHHHTTT
T ss_pred HHHHHHHHHHHH
T ss_conf 789999999999
No 9
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.49 E-value=1.9e+02 Score=10.53 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 66566789999999999744
Q gi|254780175|r 12 NQQRDNHKALLASIDKVMSE 31 (38)
Q Consensus 12 nqqrdnhkallasidkvmse 31 (38)
.|-|+|-+..|..-.+++.+
T Consensus 31 GQGre~a~~~L~enpel~~e 50 (60)
T d1mo6a2 31 GQGKENARNFLVENADVADE 50 (60)
T ss_dssp EESHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHH
T ss_conf 75799999999979999999
No 10
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=2.24 E-value=2e+02 Score=10.34 Aligned_cols=6 Identities=83% Similarity=1.154 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780175|r 18 HKALLA 23 (38)
Q Consensus 18 hkalla 23 (38)
|||.||
T Consensus 6 hkaila 11 (34)
T d1xmeb2 6 HKAILA 11 (34)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 899999
Done!