RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780175|ref|YP_003064588.1| hypothetical protein
CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62]
         (38 letters)



>gnl|CDD|181415 PRK08412, flgL, flagellar hook-associated protein FlgL; Validated.
          Length = 827

 Score = 24.4 bits (53), Expect = 6.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 2   TDIAKAQIKENQQRDNHKALLASIDKV 28
           TD+A+   K +    N+ A+LAS +K+
Sbjct: 792 TDMAETYNKFSNLTTNYNAVLASTNKI 818


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.303    0.118    0.295 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 519,931
Number of extensions: 15015
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 6
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.2 bits)