RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780175|ref|YP_003064588.1| hypothetical protein
CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62]
         (38 letters)



>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 24.5 bits (53), Expect = 5.3
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 3  DIAKAQIKENQQRDNHKALLASIDKVMSEKTKD 35
             +AQIK+  + +  +AL    +++ SE   +
Sbjct: 34 VTREAQIKDWVENE-LEALKLEAEEIPSEDQNE 65


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.303    0.118    0.295 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 209,063
Number of extensions: 4121
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 2
Length of query: 38
Length of database: 4,956,049
Length adjustment: 11
Effective length of query: 27
Effective length of database: 4,584,194
Effective search space: 123773238
Effective search space used: 123773238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.5 bits)