HHsearch alignment for GI: 254780177 and conserved domain: TIGR00214
>TIGR00214 lipB lipoyltransferase; InterPro: IPR000544 Lipoate-protein ligase B (gene lipB) is the bacterial enzyme that creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoate-dependent enzymes. Such an enzyme has also been found in fungi , where it is located in the mitochondria. It also seems to exist in plants and is encoded in the chloroplast genome of the red alga Cyanidium caldarium .; GO: 0009107 lipoate biosynthetic process.
Probab=99.97 E-value=3.8e-31 Score=222.74 Aligned_cols=174 Identities=39% Similarity=0.756 Sum_probs=151.8
Q ss_pred CCCCEEEEEEC---------CCEEEECCC----------CCHHHHCCCC--CCE---EEEECCCCEEEEECCCCEEEEEE
Q ss_conf 97878999806---------873774347----------8855610547--824---99805667078607892477765
Q gi|254780177|r 51 NAEELVWLLEH---------PPLYTSGTS----------AISDDLLSPK--SLP---VYTTGRGGGYTYHGPGQRIIYIM 106 (257)
Q Consensus 51 ~~~d~l~llEH---------~pVyT~G~~----------~~~~dll~~~--~ip---v~~t~RGG~iTyHGPGQlV~Ypi 106 (257)
T Consensus 11 ~~~d~~~~~~~~p~~~~~~~~p~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~gg~~~~~~pg~~~~~~~ 90 (220)
T TIGR00214 11 ETLDGLWLLEHNPIILTFEFPPVYTGGKRIKKTLTPDQGGKPEHLLPDPQKDYPPPELVQSERGGQVTYHGPGQLVGYVL 90 (220)
T ss_pred HHHHCEEEECCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHEEECCCCEEEECCCCCEEEEEE
T ss_conf 22200002116844787523521013310000037421133100015651126630102201576245406752211000
Q ss_pred ECCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCC---CC------CCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC
Q ss_conf 1210012-03899999999999999886288532---45------88721674166766655565642101000000048
Q gi|254780177|r 107 LNLAKRR-KDLRCFVAALEEVIIRTLKILGIVGE---RR------EDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257)
Q Consensus 107 i~L~~~~-~~v~~yv~~lE~~ii~~l~~~gI~~~---~~------~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257)
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g-----------~~~~~~~~~~~~~ 159 (220)
T TIGR00214 91 LDLKRFKSLPLRWLVTCLEQTLVRTLAELGLEGDTDKPLNLDALTADAPGVWVENG-----------KKKVASLGLRVRR 159 (220)
T ss_pred EHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCC-----------CCCHHHHHHHHHC
T ss_conf 00011104556888988888998888750332334443221001456662021265-----------3000111101102
Q ss_pred CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHC--CCCCHHHHHHHHHHHHHHHHC
Q ss_conf 88998899995499135173410567978521289918--988999999999999998746
Q gi|254780177|r 177 WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELG--YSYSMKYIDTLIRKSFESVFG 235 (257)
Q Consensus 177 ~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg--~~i~~~ev~~~l~~~f~~~Fg 235 (257)
T Consensus 160 ~~~~~g~~~~~~~d~~~~~~~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T TIGR00214 160 GCTFHGLALNVNPDLSPFNHINPCGLGGLPVGSLNEFLPDPGLTVENVAPLLLKEFAELLG 220 (220)
T ss_pred CCEECCEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 3000322453033423000100035554202344443143321034556889999987519