HHsearch alignment of GI: 254780177 and MMDB domain: 2c8m_A_
>2c8m_A (A:) Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum}
Probab=100.00 E-value=2.2e-31 Score=223.91 Aligned_cols=209 Identities=15% Similarity=0.193 Sum_probs=181.9
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEECCC
Q ss_conf 9808885889999999999999973997878999806873774347885561-----05478249980566707860789
Q gi|254780177|r 25 WVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHGPG 99 (257)
Q Consensus 25 ~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHGPG 99 (257)
.+..+..||...+++++.+..++.+++. ++|++.||+|++|+|++.+..++ +...++||++..+||+.|||+||
T Consensus 6 ~~~~~~~~~~~~la~ee~l~~~~~~~~~-~~l~~~~~~p~v~iG~~q~~~~ev~~~~~~~~~i~vvrR~tGGg~v~hd~G 84 (262)
T 2c8m_A 6 LLLETPGNTRMSLAYDEAIYRSFQYGDK-PILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLG 84 (262)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHCCTTSC-CEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCC
T ss_conf 9964999988989999999972547899-899998179979989789803554989998679838998369964998899
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEE
Q ss_conf 24777651210012038999999999999998862885324588721674166766655565642101000000048889
Q gi|254780177|r 100 QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS 179 (257)
Q Consensus 100 QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT 179 (257)
||+.|+|++.+ +.++.++.+.++++++++|+++|+++...+..+++|+... ..+.....+||++.|.+++++++
T Consensus 85 ~l~~s~i~~~~--~~~~~~~y~~~~~~i~~~l~~~Gi~~~~~~~~~~~~~~~~----~~di~~~gkKi~G~a~~~~~~~~ 158 (262)
T 2c8m_A 85 DLNFSVVRSSD--DMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNK----KTDIMAGEKKIMGAAGAMRKGAK 158 (262)
T ss_dssp EEEEEEEEECS--SCCHHHHHHHHHHHHHHHHHHTTCCCEECCBCCTTSSSSB----TTSEEETTEEEEEEEEEEETTEE
T ss_pred CEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCC----CCCCCCCCEEEEEEEEEEECCEE
T ss_conf 81899997058--9999999999999999999973951588585880784567----77655687068753025438889
Q ss_pred EEEEEEEECCCCHH---HCCEEECCCCCCCCCCHHHH------CCCCCHHHHHHHHHHHHHHHHCHHHHC
Q ss_conf 98899995499135---17341056797852128991------898899999999999999874611102
Q gi|254780177|r 180 FHGLSLNISPDLSY---YTGIVPCGISQHGVTSLKEL------GYSYSMKYIDTLIRKSFESVFGPTILH 240 (257)
Q Consensus 180 ~HG~alNv~~dL~~---F~~IvPCGl~~~~vTSl~~l------g~~i~~~ev~~~l~~~f~~~Fg~~~~~ 240 (257)
+|+.+||+++|++. +-.+.||++.++.++|+.+. ..+++++++.+.|++.|.+.||.....
T Consensus 159 l~~~tll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 228 (262)
T 2c8m_A 159 LWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFRE 228 (262)
T ss_dssp EEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTSCCCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9986611479999999875889644422234434653336877189899999999999999985897601