HHsearch alignment of GI: 254780177 and MMDB domain: 2c8m_A_

>2c8m_A (A:) Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum}
Probab=100.00  E-value=2.2e-31  Score=223.91  Aligned_cols=209  Identities=15%  Similarity=0.193  Sum_probs=181.9

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEECCC
Q ss_conf             9808885889999999999999973997878999806873774347885561-----05478249980566707860789
Q gi|254780177|r   25 WVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHGPG   99 (257)
Q Consensus        25 ~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHGPG   99 (257)
                      .+..+..||...+++++.+..++.+++. ++|++.||+|++|+|++.+..++     +...++||++..+||+.|||+||
T Consensus         6 ~~~~~~~~~~~~la~ee~l~~~~~~~~~-~~l~~~~~~p~v~iG~~q~~~~ev~~~~~~~~~i~vvrR~tGGg~v~hd~G   84 (262)
T 2c8m_A            6 LLLETPGNTRMSLAYDEAIYRSFQYGDK-PILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLG   84 (262)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHCCTTSC-CEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTT
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCC
T ss_conf             9964999988989999999972547899-899998179979989789803554989998679838998369964998899


Q ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEE
Q ss_conf             24777651210012038999999999999998862885324588721674166766655565642101000000048889
Q gi|254780177|r  100 QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS  179 (257)
Q Consensus       100 QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT  179 (257)
                      ||+.|+|++.+  +.++.++.+.++++++++|+++|+++...+..+++|+...    ..+.....+||++.|.+++++++
T Consensus        85 ~l~~s~i~~~~--~~~~~~~y~~~~~~i~~~l~~~Gi~~~~~~~~~~~~~~~~----~~di~~~gkKi~G~a~~~~~~~~  158 (262)
T 2c8m_A           85 DLNFSVVRSSD--DMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNK----KTDIMAGEKKIMGAAGAMRKGAK  158 (262)
T ss_dssp             EEEEEEEEECS--SCCHHHHHHHHHHHHHHHHHHTTCCCEECCBCCTTSSSSB----TTSEEETTEEEEEEEEEEETTEE
T ss_pred             CEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCC----CCCCCCCCEEEEEEEEEEECCEE
T ss_conf             81899997058--9999999999999999999973951588585880784567----77655687068753025438889


Q ss_pred             EEEEEEEECCCCHH---HCCEEECCCCCCCCCCHHHH------CCCCCHHHHHHHHHHHHHHHHCHHHHC
Q ss_conf             98899995499135---17341056797852128991------898899999999999999874611102
Q gi|254780177|r  180 FHGLSLNISPDLSY---YTGIVPCGISQHGVTSLKEL------GYSYSMKYIDTLIRKSFESVFGPTILH  240 (257)
Q Consensus       180 ~HG~alNv~~dL~~---F~~IvPCGl~~~~vTSl~~l------g~~i~~~ev~~~l~~~f~~~Fg~~~~~  240 (257)
                      +|+.+||+++|++.   +-.+.||++.++.++|+.+.      ..+++++++.+.|++.|.+.||.....
T Consensus       159 l~~~tll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  228 (262)
T 2c8m_A          159 LWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFRE  228 (262)
T ss_dssp             EEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTSCCCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9986611479999999875889644422234434653336877189899999999999999985897601