HHsearch results for GI: 254780177 and protein with PDBid: 1vqz_A

>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3
Probab=99.76  E-value=8.6e-17  Score=128.18  Aligned_cols=199  Identities=14%  Similarity=0.135  Sum_probs=152.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEE
Q ss_conf             9723899808885889999999999999973997878999806873774347885561-----05478249980566707
Q gi|254780177|r   19 ISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGY   93 (257)
Q Consensus        19 ~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~i   93 (257)
                      ...+++..+...=||. -+++-+.+.+...  ..+.+++|-+++|++++|++.+....     +...++|+++-..||+.
T Consensus        10 ~~~m~~i~~~s~dp~~-NlAlee~L~~~~~--~~~~~l~lw~n~p~VviG~~Q~~~~Evn~~~~~~~gi~vvRR~sGGGa   86 (341)
T 1vqz_A           10 HHHMKYIINHSNDTAF-NIALEEYAFKHLL--DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGA   86 (341)
T ss_dssp             --CEEEEECCCCCHHH-HHHHHHHHHHHCT--TCSEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCC
T ss_pred             CCEEEEEECCCCCHHH-HHHHHHHHHHHCC--CCCCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEECCCCCE
T ss_conf             5537999779999889-8999999996078--899889998169989989889837766889998769939998289974


Q ss_pred             EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE
Q ss_conf             86078924777651210012038999999999999998862885324588721674166766655565642101000000
Q gi|254780177|r   94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR  173 (257)
Q Consensus        94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~  173 (257)
                      +||+|||+...+|++....   .....+.+.++++++|+.+||++... ++-.+||++             +||+..+.+
T Consensus        87 VyhD~g~l~~s~i~~~~~~---~~~~y~~~~~~ii~aL~~lGi~a~~~-~rnDi~v~g-------------~KIsG~A~~  149 (341)
T 1vqz_A           87 VYHDLNNLNYTIISKEDEN---KAFDFKSFSTPVINTLAQLGVKAEFT-GRNDLEIDG-------------KKFCGNAQA  149 (341)
T ss_dssp             EEECTTEEEEEEEEECCTT---CCCSHHHHHHHHHHHHHHTTCCEEEE-TTTEEEETT-------------EEEEEEEEE
T ss_pred             EEECCCCEEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCEECC-------------EEEEEEEEE
T ss_conf             9989996799999737665---22119999999999999739763772-468824888-------------686435679


Q ss_pred             CCCCEEEEEEEEEECCCCHHHCCEE---ECCCCC-------CCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf             0488899889999549913517341---056797-------85212899-1898899999999999999874611
Q gi|254780177|r  174 IRKWISFHGLSLNISPDLSYYTGIV---PCGISQ-------HGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPT  237 (257)
Q Consensus       174 i~~~vT~HG~alNv~~dL~~F~~Iv---PCGl~~-------~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~  237 (257)
                      ..++..+|+.+|.++.|++.+....   ++++.+       ..||+|.+ ++.+++++++.+.|.+.|.+.|+..
T Consensus       150 ~~~~~~l~hgtll~~~d~~~l~~~L~~~~~k~~~k~~~Sv~~rvtnl~~~l~~~~~~e~~~~~l~~~f~~~~~~~  224 (341)
T 1vqz_A          150 YINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM  224 (341)
T ss_dssp             EETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             EECCEEEEECEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             858868994200037899999988389940202305642265523089775999999999999999999973888