HHsearch results for GI: 254780177 and protein with PDBid: 1vqz_A
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3
Probab=99.76 E-value=8.6e-17 Score=128.18 Aligned_cols=199 Identities=14% Similarity=0.135 Sum_probs=152.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEE
Q ss_conf 9723899808885889999999999999973997878999806873774347885561-----05478249980566707
Q gi|254780177|r 19 ISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGY 93 (257)
Q Consensus 19 ~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~i 93 (257)
...+++..+...=||. -+++-+.+.+... ..+.+++|-+++|++++|++.+.... +...++|+++-..||+.
T Consensus 10 ~~~m~~i~~~s~dp~~-NlAlee~L~~~~~--~~~~~l~lw~n~p~VviG~~Q~~~~Evn~~~~~~~gi~vvRR~sGGGa 86 (341)
T 1vqz_A 10 HHHMKYIINHSNDTAF-NIALEEYAFKHLL--DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGA 86 (341)
T ss_dssp --CEEEEECCCCCHHH-HHHHHHHHHHHCT--TCSEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCC
T ss_pred CCEEEEEECCCCCHHH-HHHHHHHHHHHCC--CCCCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEECCCCCE
T ss_conf 5537999779999889-8999999996078--899889998169989989889837766889998769939998289974
Q ss_pred EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE
Q ss_conf 86078924777651210012038999999999999998862885324588721674166766655565642101000000
Q gi|254780177|r 94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR 173 (257)
Q Consensus 94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~ 173 (257)
+||+|||+...+|++.... .....+.+.++++++|+.+||++... ++-.+||++ +||+..+.+
T Consensus 87 VyhD~g~l~~s~i~~~~~~---~~~~y~~~~~~ii~aL~~lGi~a~~~-~rnDi~v~g-------------~KIsG~A~~ 149 (341)
T 1vqz_A 87 VYHDLNNLNYTIISKEDEN---KAFDFKSFSTPVINTLAQLGVKAEFT-GRNDLEIDG-------------KKFCGNAQA 149 (341)
T ss_dssp EEECTTEEEEEEEEECCTT---CCCSHHHHHHHHHHHHHHTTCCEEEE-TTTEEEETT-------------EEEEEEEEE
T ss_pred EEECCCCEEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCEECC-------------EEEEEEEEE
T ss_conf 9989996799999737665---22119999999999999739763772-468824888-------------686435679
Q ss_pred CCCCEEEEEEEEEECCCCHHHCCEE---ECCCCC-------CCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf 0488899889999549913517341---056797-------85212899-1898899999999999999874611
Q gi|254780177|r 174 IRKWISFHGLSLNISPDLSYYTGIV---PCGISQ-------HGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPT 237 (257)
Q Consensus 174 i~~~vT~HG~alNv~~dL~~F~~Iv---PCGl~~-------~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~ 237 (257)
..++..+|+.+|.++.|++.+.... ++++.+ ..||+|.+ ++.+++++++.+.|.+.|.+.|+..
T Consensus 150 ~~~~~~l~hgtll~~~d~~~l~~~L~~~~~k~~~k~~~Sv~~rvtnl~~~l~~~~~~e~~~~~l~~~f~~~~~~~ 224 (341)
T 1vqz_A 150 YINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM 224 (341)
T ss_dssp EETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC
T ss_pred EECCEEEEECEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 858868994200037899999988389940202305642265523089775999999999999999999973888