HHSEARCH alignment of GI: 254780177 and SCOP domain: d1biaa3

Alignment

Probab=96.39  E-value=0.032  Score=32.05  Aligned_cols=128  Identities=14%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             CCCEEEEECCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             667078607892-4777651210012038999999999999998862885324588721674166766655565642101
Q gi|254780177|r   89 RGGGYTYHGPGQ-RIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKI  167 (257)
Q Consensus        89 RGG~iTyHGPGQ-lV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KI  167 (257)
                      |.|..=+--||. +.+-.++...........+--..--++.++|..+.......+=-=-|++             .++||
T Consensus        55 R~gr~W~S~~G~~l~~S~~~~~~~~~~~~~~l~~~~~lav~~~l~~~~~~~~~iKWPNDIl~-------------~~kKi  121 (207)
T d1biaa3          55 RRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYL-------------QDRKL  121 (207)
T ss_dssp             -------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEE-------------TTEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHC-------------CCCCC
T ss_conf             69982446656665412210024670443103457788888887631453033553315545-------------88751


Q ss_pred             EEHHEECC-----CCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             00000004-----888998899995499135173410567978521289918988999999999999998746
Q gi|254780177|r  168 AAIGIRIR-----KWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFG  235 (257)
Q Consensus       168 asIGi~i~-----~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg  235 (257)
                      |-|=+...     ....-=|+.||++..-  +    |=.+.+...+++.+.|.+++.+++-..+.++|.+.|.
T Consensus       122 ~GIL~E~~~~~~~~~~vviGiGiNv~~~~--~----~~~~~~~~~s~l~~~~~~i~~~~l~~~ll~~l~~~l~  188 (207)
T d1biaa3         122 AGILVELTGKTGDAAQIVIGAGINMAMRR--V----EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALE  188 (207)
T ss_dssp             EEEEEEEEC----CEEEEEEEEEECCC-----------------CCCTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCEEEEECCCCCCCCC--C----CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             04147777516872113541033323688--8----6000101257899868999999999999999999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain
species: Escherichia coli [TaxId: 562]