Query         gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 257
No_of_seqs    124 out of 1284
Neff          4.9 
Searched_HMMs 13730
Date          Mon May 23 01:41:02 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780177.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1w66a1 d.104.1.3 (A:1-216) Li 100.0       0       0  474.7  23.8  207   17-237     7-214 (216)
  2 d2p0la1 d.104.1.3 (A:4-272) Li  99.9 1.8E-24 1.3E-28  176.4  17.7  200   27-239    17-248 (269)
  3 d2c8ma1 d.104.1.3 (A:1-256) Li  99.9 5.9E-24 4.3E-28  173.2  18.6  208   25-240     6-228 (256)
  4 d2p5ia1 d.104.1.3 (A:14-278) H  99.9 1.3E-22 9.2E-27  164.5  17.1  199   31-243    14-243 (265)
  5 d1x2ga2 d.104.1.3 (A:1-246) Tw  99.9   2E-22 1.5E-26  163.1  17.0  203   21-242     2-219 (246)
  6 d1vqza2 d.104.1.3 (A:1-241) Lp  99.9 1.3E-21 9.4E-26  157.9  18.2  195   22-236     1-211 (241)
  7 d2zgwa2 d.104.1.2 (A:1-188) Bi  97.9 0.00013 9.4E-09   47.6  11.4  121   89-236    48-170 (188)
  8 d1biaa3 d.104.1.2 (A:64-270) B  96.4   0.032 2.4E-06   32.0  10.8  128   89-235    55-188 (207)
  9 d2ddza1 d.104.1.4 (A:3-190) Un  85.5     1.1 8.3E-05   22.0   8.2   90  118-234    84-174 (188)
 10 d1b24a2 d.95.2.1 (A:100-179) D  57.6     3.7 0.00027   18.7   2.9   29  123-151    35-65  (80)
 11 d2piea1 b.26.1.2 (A:13-139) Ub  28.4      16  0.0012   14.6   2.4   57   51-111    13-69  (127)
 12 d2ok5a4 g.18.1.1 (A:9-76) Comp  22.6      19  0.0014   14.0   1.8   17   89-105    12-28  (68)
 13 d2voua2 d.16.1.2 (A:164-291) D  22.1      19  0.0014   14.1   1.7   14   94-107    32-46  (128)
 14 d1obra_ c.56.5.2 (A:) Carboxyp  20.9      19  0.0014   14.0   1.5   16   91-106   199-214 (323)
 15 d2ipqx1 a.4.5.74 (X:396-528) H  20.5      18  0.0013   14.2   1.4   20   87-106    84-112 (133)
 16 d1uwya2 c.56.5.1 (A:1-296) Car  20.0      16  0.0012   14.6   1.0   16   92-107   169-184 (296)

No 1  
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=0  Score=474.73  Aligned_cols=207  Identities=33%  Similarity=0.543  Sum_probs=190.6

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEE
Q ss_conf             78972389980888588999999999999997399787899980687377434788556105478249980566707860
Q gi|254780177|r   17 ENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYH   96 (257)
Q Consensus        17 ~~~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyH   96 (257)
                      ..+.+|+++ ..|++||+++|++|+++++++.++. +|+|||||||||||+|++++.++++. .++||++|+|||++|||
T Consensus         7 ~~~~~i~i~-~LG~v~Y~~a~~~q~~~~~~~~~~~-~d~llllEH~pVyT~G~~~~~~~~~~-~~i~v~~tdRGG~vTyH   83 (216)
T d1w66a1           7 SKLSAIDVR-QLGTVDYRTAWQLQRELADARVAGG-ADTLLLLEHPAVYTAGRRTETHERPI-DGTPVVDTDRGGKITWH   83 (216)
T ss_dssp             SCCSCCEEE-EEEECCHHHHHHHHHHHHHHHHTTC-CCEEEEEECCSEEEECTTCCGGGSCT-TCCCCEECSSSSSEEEE
T ss_pred             HCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCEEECCCCCCCCCCC-CCCCEEECCCCCEEEEE
T ss_conf             218943798-8896088999999999999984799-88599994588356056676654544-11002442788527774


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC
Q ss_conf             78924777651210012038999999999999998862885324588721674166766655565642101000000048
Q gi|254780177|r   97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK  176 (257)
Q Consensus        97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~  176 (257)
                      ||||||+|||+||++ ..++++|++.||+++|++|++|||++.+++++|||||++.          .++||||||++++|
T Consensus        84 GPGQlV~Ypil~l~~-~~~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~~----------~~~KIasiGv~v~~  152 (216)
T d1w66a1          84 GPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGR----------PARKVAAIGVRVSR  152 (216)
T ss_dssp             CTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSS----------SCEEEEEEEEEEET
T ss_pred             CCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC----------HHHHHHHHHHHHCC
T ss_conf             377456677761211-2213566777889999998751442112246775012110----------15678899977503


Q ss_pred             CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf             88998899995499135173410567978521289-91898899999999999999874611
Q gi|254780177|r  177 WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPT  237 (257)
Q Consensus       177 ~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~  237 (257)
                      ||||||||||||+||++|+.|+|||+++..||||+ ++|.+++++|+++.++++|.+.|...
T Consensus       153 ~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~~~f~~~  214 (216)
T d1w66a1         153 ATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV  214 (216)
T ss_dssp             TEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CEEECCEEEECCCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             62521357852577554690785799999266417996899989999999999999986111


No 2  
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]}
Probab=99.93  E-value=1.8e-24  Score=176.41  Aligned_cols=200  Identities=14%  Similarity=0.067  Sum_probs=168.0

Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCH-------HHHCCCCCCEEEEECCCCEEEEECCC
Q ss_conf             08885889999999999999973997878999806873774347885-------56105478249980566707860789
Q gi|254780177|r   27 MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAIS-------DDLLSPKSLPVYTTGRGGGYTYHGPG   99 (257)
Q Consensus        27 ~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~-------~dll~~~~ipv~~t~RGG~iTyHGPG   99 (257)
                      ..+..|.+..++.++.+++.+..+..+.+|+|.+|+|++++|++.+.       .+.+...|+++++-.+||+.+||+||
T Consensus        17 ~~~~~d~~~~la~~e~ll~~v~~~~~~~~l~~w~~~ptvvlG~~q~~~~~~e~~~~~~~~~gi~vvRR~sGGgaV~hd~G   96 (269)
T d2p0la1          17 VTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEG   96 (269)
T ss_dssp             BCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEESTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCC
T ss_conf             36888978978999999997225789978999348998998987676821888899999859958996579866998899


Q ss_pred             CEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCEEEECCCCCCCCCCCCCCCCCCEEHH
Q ss_conf             24777651210-01203899999999999999886288532458-------87216741667666555656421010000
Q gi|254780177|r  100 QRIIYIMLNLA-KRRKDLRCFVAALEEVIIRTLKILGIVGERRE-------DRVGIWVVRLNKTRDNQLLLIEEKIAAIG  171 (257)
Q Consensus       100 QlV~Ypii~L~-~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~-------~~~GVWV~~~~~~~~~~~~~~~~KIasIG  171 (257)
                      ||..++|++.. ....++..+.+.+.++++++|+.+||++...+       +.-.+++             ..+||+..+
T Consensus        97 ~l~~s~i~p~~~~~~~~i~~~y~~~~~~i~~~L~~lGi~a~~~~~~~~~c~g~~Dl~v-------------~grKi~G~A  163 (269)
T d2p0la1          97 ILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSI-------------NGKKFAGLA  163 (269)
T ss_dssp             EEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEE-------------TTEEEEEEE
T ss_pred             CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEE-------------CCEEEEEEE
T ss_conf             6799999705533589999999999999999999759736871356777877535774-------------472799876


Q ss_pred             EECCCCEEEEEEEEEECCCCHH----HCCEEECCCCCC------------CCCCHHH-HCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             0004888998899995499135----173410567978------------5212899-1898899999999999999874
Q gi|254780177|r  172 IRIRKWISFHGLSLNISPDLSY----YTGIVPCGISQH------------GVTSLKE-LGYSYSMKYIDTLIRKSFESVF  234 (257)
Q Consensus       172 i~i~~~vT~HG~alNv~~dL~~----F~~IvPCGl~~~------------~vTSl~~-lg~~i~~~ev~~~l~~~f~~~F  234 (257)
                      -+.+|+..+|+.+|+++.|+..    ++....||+++.            .||||++ ++.+++++++.+.|+..|.+.|
T Consensus       164 qr~~r~~~l~hgtllv~~d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~L~~~~s~e~v~~~l~~~f~~~~  243 (269)
T d2p0la1         164 QRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLKQVG  243 (269)
T ss_dssp             EEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEEHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             78988889999999970788999999877776304644543335765501213599873999999999999999999972


Q ss_pred             CHHHH
Q ss_conf             61110
Q gi|254780177|r  235 GPTIL  239 (257)
Q Consensus       235 g~~~~  239 (257)
                      +....
T Consensus       244 ~~~~~  248 (269)
T d2p0la1         244 FNDRL  248 (269)
T ss_dssp             CCEEE
T ss_pred             CCCCC
T ss_conf             87751


No 3  
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}
Probab=99.92  E-value=5.9e-24  Score=173.15  Aligned_cols=208  Identities=14%  Similarity=0.217  Sum_probs=164.6

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEECCC
Q ss_conf             9808885889999999999999973997878999806873774347885561-----05478249980566707860789
Q gi|254780177|r   25 WVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHGPG   99 (257)
Q Consensus        25 ~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHGPG   99 (257)
                      .+..++-+....+++-+.+.+....+. ..++.+.+|.|.+++|++.+..+.     +...++||++-.+||+++||+||
T Consensus         6 ~~~~~~~~~~~nmA~de~Ll~~~~~~~-~p~lr~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~tGGgaV~hd~g   84 (256)
T d2c8ma1           6 LLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLG   84 (256)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHCCTTS-CCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTT
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCC
T ss_conf             996399998999999999997343799-9789997589969988889801441989998679958997069862897899


Q ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEE
Q ss_conf             24777651210012038999999999999998862885324588721674166766655565642101000000048889
Q gi|254780177|r  100 QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS  179 (257)
Q Consensus       100 QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT  179 (257)
                      |++.|+|++..  ..++..+.+.+.++++++|+.+||+++..+ ..++++..+.   ..+.....+||+..+.+.+++..
T Consensus        85 ~l~~s~i~~~~--~~~~~~~y~~~~~~i~~~l~~lGi~a~~~~-~~~~~~~~~~---~~di~~~~~Ki~G~a~~~~~~~~  158 (256)
T d2c8ma1          85 DLNFSVVRSSD--DMDITSMFRTMNEAVVNSLRILGLDARPGE-LNDVSIPVNK---KTDIMAGEKKIMGAAGAMRKGAK  158 (256)
T ss_dssp             EEEEEEEEECS--SCCHHHHHHHHHHHHHHHHHHTTCCCEECC-BCCTTSSSSB---TTSEEETTEEEEEEEEEEETTEE
T ss_pred             CEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEECC-CCCEEEEECC---CCCCCCCCCEECCCCCCCCCCEE
T ss_conf             84999997158--999999999999999998765280378868-5870898204---77654554334032222135179


Q ss_pred             EEEEEEEECCCCHHH---CCEEECCCCCCCCCCH-------HHHCCCCCHHHHHHHHHHHHHHHHCHHHHC
Q ss_conf             988999954991351---7341056797852128-------991898899999999999999874611102
Q gi|254780177|r  180 FHGLSLNISPDLSYY---TGIVPCGISQHGVTSL-------KELGYSYSMKYIDTLIRKSFESVFGPTILH  240 (257)
Q Consensus       180 ~HG~alNv~~dL~~F---~~IvPCGl~~~~vTSl-------~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~  240 (257)
                      +|+.+|++++|++.+   -.+.||++.+..++|+       .++ .+++++++.+.|++.|.+.|+..+..
T Consensus       159 l~hgtll~~~d~~~l~~~L~~~~~~~~~~~~~s~~~~vt~L~~~-~~~~~e~~~~~l~~~f~~~~~~~~~~  228 (256)
T d2c8ma1         159 LWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSETLHIDFRE  228 (256)
T ss_dssp             EEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99867403799999998758895010320355447533048762-89899999999999999985897612


No 4  
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]}
Probab=99.90  E-value=1.3e-22  Score=164.50  Aligned_cols=199  Identities=14%  Similarity=0.022  Sum_probs=165.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCH-----H--HHCCCCCCEEEEECCCCEEEEECCCCEEE
Q ss_conf             5889999999999999973997878999806873774347885-----5--61054782499805667078607892477
Q gi|254780177|r   31 VDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAIS-----D--DLLSPKSLPVYTTGRGGGYTYHGPGQRII  103 (257)
Q Consensus        31 v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~-----~--dll~~~~ipv~~t~RGG~iTyHGPGQlV~  103 (257)
                      .|....++.++.+.+.+.++..+.+|.|.+|+|++|+|++.+.     .  +.+...++||++-.+||+.+||+|||+..
T Consensus        14 ~~~~~~~A~de~Ll~~~~~~~~~p~lr~~~~~ptv~lG~~q~~~~~~~~~~~~~~~~gi~vvRR~tGGgaV~hd~g~l~~   93 (265)
T d2p5ia1          14 FQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNL   93 (265)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEESSCCCCEEECTTEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCEE
T ss_conf             89889779999999987468999889999519989989888888535667999997698199961899559976998189


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC
Q ss_conf             765121001203899999999999999886288532458-------8721674166766655565642101000000048
Q gi|254780177|r  104 YIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRE-------DRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK  176 (257)
Q Consensus       104 Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~-------~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~  176 (257)
                      ++|+.... ..++..+.+.+.++++++|+.+||++...+       +...||++             .+||+.++.+.++
T Consensus        94 s~i~~~~~-~~~~~~~y~~~~~~i~~~l~~lGi~a~~~~~~~~~c~g~~Dl~v~-------------g~Ki~G~Aq~~~~  159 (265)
T d2p5ia1          94 SLVLKEEK-GFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSID-------------GKKFAGISQRRIR  159 (265)
T ss_dssp             EEEEECCT-TCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEET-------------TEEEEEEEEEEET
T ss_pred             EEEECCCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEC-------------CEEEEEEEEEEEC
T ss_conf             99974344-531789999999999999997297427746667779887746888-------------8899987678988


Q ss_pred             CEEEEEEEEEECCCCHHHCCEE----------------ECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             8899889999549913517341----------------05679785212899-189889999999999999987461110
Q gi|254780177|r  177 WISFHGLSLNISPDLSYYTGIV----------------PCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTIL  239 (257)
Q Consensus       177 ~vT~HG~alNv~~dL~~F~~Iv----------------PCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~  239 (257)
                      +...|.-+|.++.|++....+.                .|......||||++ +|..++++++.+.+++.|.+.+++...
T Consensus       160 ~~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~l~~~~~~~~v~~~l~~~f~~~~~~l~~  239 (265)
T d2p5ia1         160 GGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQQHGASLLT  239 (265)
T ss_dssp             TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CEEEEEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             88999989996489899999971232222113564334566422202769998489999999999999999985686501


Q ss_pred             CHHH
Q ss_conf             2331
Q gi|254780177|r  240 HEYA  243 (257)
Q Consensus       240 ~~~~  243 (257)
                      .+++
T Consensus       240 ~~lt  243 (265)
T d2p5ia1         240 ESLS  243 (265)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             7889


No 5  
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.90  E-value=2e-22  Score=163.14  Aligned_cols=203  Identities=17%  Similarity=0.225  Sum_probs=157.5

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEE
Q ss_conf             23899808885889999999999999973997878999806873774347885561-----0547824998056670786
Q gi|254780177|r   21 PIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTY   95 (257)
Q Consensus        21 ~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTy   95 (257)
                      .+++..+...-+| .-+++.+.+.+....  ...++.+.+|+|++++|++.+....     +...++|+++-.+||+++|
T Consensus         2 ~~rii~~~~~d~~-~NlA~de~Ll~~~~~--~~~~l~~~~~~p~v~lG~~Q~~~~ev~~~~~~~~gi~vvRR~tGGgaV~   78 (246)
T d1x2ga2           2 TLRLLISDSYDPW-FNLAVEECIFRQMPA--TQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVF   78 (246)
T ss_dssp             CEEEEEECCCCHH-HHHHHHHHHHHTSCT--TSEEEEEECCSSEEEECTTCCHHHHBCHHHHHHHTCEEEECSSCCCCEE
T ss_pred             CEEEEECCCCCHH-HHHHHHHHHHHCCCC--CCCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCEEEEECCCCCEEE
T ss_conf             3999977999989-999999999964898--9959999827998998998986676589999877982999768872799


Q ss_pred             ECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECC
Q ss_conf             07892477765121001203899999999999999886288532458872167416676665556564210100000004
Q gi|254780177|r   96 HGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIR  175 (257)
Q Consensus        96 HGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~  175 (257)
                      |+|||+.+|+|++.....      ...++++++++|..+|+++... +...++++-         ..+.+||+.++.+.+
T Consensus        79 hd~g~~~~s~i~~~~~~~------~~~~~~~i~~~l~~lgi~a~~~-~~~~~~~~~---------~~~gkKi~G~aq~~~  142 (246)
T d1x2ga2          79 HDLGNTCFTFMAGKPEYD------KTISTSIVLNALNALGVSAEAS-GRNDLVVKT---------VEGDRKVSGSAYRET  142 (246)
T ss_dssp             ECTTEEEEEEEEETTTCC------HHHHHHHHHHHHHHTTCCEEEE-TTTEEEECC---------TTCCEEEEEEEEEEC
T ss_pred             ECCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHCCCCEEEC-CCCCEEEEC---------CCCCEEEEEEEEEEE
T ss_conf             679998999975572461------9999999999888618833666-855436731---------468617976779998


Q ss_pred             CCEEEEEEEEEECCCCHHHC---CEEECCCCCC-------CCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHCHH
Q ss_conf             88899889999549913517---3410567978-------5212899189889999999999999987461110233
Q gi|254780177|r  176 KWISFHGLSLNISPDLSYYT---GIVPCGISQH-------GVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHEY  242 (257)
Q Consensus       176 ~~vT~HG~alNv~~dL~~F~---~IvPCGl~~~-------~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~  242 (257)
                      ++...|+.+|+++.|++.+.   .+.||++.+.       .||+|.+++.+++++++.+.|.+.|.+.|+..+....
T Consensus       143 ~~~~l~hgsi~~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~vt~l~e~~~~i~~e~~~~~l~~~f~~~~~~~~~~~~  219 (246)
T d1x2ga2         143 KDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEI  219 (246)
T ss_dssp             SSEEEEEEEEESSCCSSGGGGGBCCCHHHHHCCC------CBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             CCEEEEECEEEECCCHHHHHHHCCCCCCCHHHHCCCCHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999907886569978977650889411133103432664767999679999999999999999998488773651


No 6  
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.89  E-value=1.3e-21  Score=157.94  Aligned_cols=195  Identities=15%  Similarity=0.149  Sum_probs=152.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEE
Q ss_conf             3899808885889999999999999973997878999806873774347885561-----05478249980566707860
Q gi|254780177|r   22 IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYH   96 (257)
Q Consensus        22 ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyH   96 (257)
                      +++..+...=+| .-+++.+.+.+....+  +.++.|.+|+|++++|++.+..+.     +...++|+++..+||+++||
T Consensus         1 ~~~i~~~s~d~~-~nmA~de~Ll~~~~~~--~~~l~~~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~tGGgaV~h   77 (241)
T d1vqza2           1 MKYIINHSNDTA-FNIALEEYAFKHLLDE--DQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYH   77 (241)
T ss_dssp             EEEEECCCCCHH-HHHHHHHHHHHHCTTC--SEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEE
T ss_pred             CEEEECCCCCHH-HHHHHHHHHHHCCCCC--CCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCEEEEECCCCCEEEE
T ss_conf             989986899989-9999999999547889--9889997089989989889803666899998779849997389863897


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC
Q ss_conf             78924777651210012038999999999999998862885324588721674166766655565642101000000048
Q gi|254780177|r   97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK  176 (257)
Q Consensus        97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~  176 (257)
                      +|||+..++|++......   ...+.+.++++++|+.+|++++.. +..++||++             +||+.++.+.++
T Consensus        78 ~~g~~~~s~i~~~~~~~~---~~~~~~~~~i~~al~~~g~~a~~~-~~~d~~v~g-------------~Ki~G~aq~~~~  140 (241)
T d1vqza2          78 DLNNLNYTIISKEDENKA---FDFKSFSTPVINTLAQLGVKAEFT-GRNDLEIDG-------------KKFCGNAQAYIN  140 (241)
T ss_dssp             CTTEEEEEEEEECCTTCC---CSHHHHHHHHHHHHHHTTCCEEEE-TTTEEEETT-------------EEEEEEEEEEET
T ss_pred             CCCCEEEEEEECCCCCHH---HHHHHHHHHHHHHHHHHCCCEEEE-CCCCEEECC-------------EEEEEEEEEEEC
T ss_conf             799748999963765437---789999999999999844660882-258779878-------------787667899868


Q ss_pred             CEEEEEEEEEECCCCHH---HCCEEECCCCCCC-------CCCHHH-HCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf             88998899995499135---1734105679785-------212899-189889999999999999987461
Q gi|254780177|r  177 WISFHGLSLNISPDLSY---YTGIVPCGISQHG-------VTSLKE-LGYSYSMKYIDTLIRKSFESVFGP  236 (257)
Q Consensus       177 ~vT~HG~alNv~~dL~~---F~~IvPCGl~~~~-------vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~  236 (257)
                      +..+|+.+|++++|++.   +-.+.||++.+..       +|+|.+ ++.+++++++.+.|.+.|.+.|+.
T Consensus       141 ~~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~v~~l~~~l~~~~~~e~~~~~l~~~f~~~~~~  211 (241)
T d1vqza2         141 GRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPE  211 (241)
T ss_dssp             TEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTT
T ss_pred             CEEEEEEEEEECCCHHHHHHHHCCCCCCCHHHCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             83999989871599999999848896433121452203211165877189999999999999999997488


No 7  
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=97.89  E-value=0.00013  Score=47.61  Aligned_cols=121  Identities=21%  Similarity=0.200  Sum_probs=85.8

Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             66707860789247776512100120389999999999999988628853245-88721674166766655565642101
Q gi|254780177|r   89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERR-EDRVGIWVVRLNKTRDNQLLLIEEKI  167 (257)
Q Consensus        89 RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~KI  167 (257)
                      |.|..=..-+|.+.+-.++...........+.-..--++++++..|+++...+ |.  -|+++             ++||
T Consensus        48 R~gr~W~sp~g~l~~S~~~~~~~~~~~~~~l~~~~~~av~~~l~~~~~~~~iKWPN--DI~~~-------------~kKi  112 (188)
T d2zgwa2          48 ALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFSIDGRIKWPN--DVLVN-------------YKAI  112 (188)
T ss_dssp             GGGCBCCCCTTSEEEEEEECCCSCTTTGGGHHHHHHHHHHHHHHHTTCCCEEETTT--EEEET-------------TEEE
T ss_pred             CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC--HHEEC-------------CCCE
T ss_conf             79987869852213178862133124555566777777887643104102678742--21268-------------8723


Q ss_pred             EEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf             00000004888998899995499135173410567978521289-9189889999999999999987461
Q gi|254780177|r  168 AAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGP  236 (257)
Q Consensus       168 asIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~  236 (257)
                      |-|=+--+.....-|+.+|++.++.            ..+|||. +++.+++.+++-..+..+|.+.|..
T Consensus       113 ~GILiE~~~~~~iiGiGiNvn~~~~------------~~atsl~~~~~~~~~~~~l~~~l~~~l~~~~~~  170 (188)
T d2zgwa2         113 AGVLVEGKGDKIVLGIGLNVNNKVP------------NGATSMKLELGSEVPLLSVFRSLITNLDRLYLN  170 (188)
T ss_dssp             EEEEEEESSSCEEEEEEECSSSCCC------------TTCCCHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCEEEEEEEEECCCCCC------------CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             7998713466599988765488799------------875009998689999999999999999999999


No 8  
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]}
Probab=96.39  E-value=0.032  Score=32.05  Aligned_cols=128  Identities=14%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             CCCEEEEECCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             667078607892-4777651210012038999999999999998862885324588721674166766655565642101
Q gi|254780177|r   89 RGGGYTYHGPGQ-RIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKI  167 (257)
Q Consensus        89 RGG~iTyHGPGQ-lV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KI  167 (257)
                      |.|..=+--||. +.+-.++...........+--..--++.++|..+.......+=-=-|++             .++||
T Consensus        55 R~gr~W~S~~G~~l~~S~~~~~~~~~~~~~~l~~~~~lav~~~l~~~~~~~~~iKWPNDIl~-------------~~kKi  121 (207)
T d1biaa3          55 RRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYL-------------QDRKL  121 (207)
T ss_dssp             -------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEE-------------TTEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHC-------------CCCCC
T ss_conf             69982446656665412210024670443103457788888887631453033553315545-------------88751


Q ss_pred             EEHHEECC-----CCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             00000004-----888998899995499135173410567978521289918988999999999999998746
Q gi|254780177|r  168 AAIGIRIR-----KWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFG  235 (257)
Q Consensus       168 asIGi~i~-----~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg  235 (257)
                      |-|=+...     ....-=|+.||++..-  +    |=.+.+...+++.+.|.+++.+++-..+.++|.+.|.
T Consensus       122 ~GIL~E~~~~~~~~~~vviGiGiNv~~~~--~----~~~~~~~~~s~l~~~~~~i~~~~l~~~ll~~l~~~l~  188 (207)
T d1biaa3         122 AGILVELTGKTGDAAQIVIGAGINMAMRR--V----EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALE  188 (207)
T ss_dssp             EEEEEEEEC----CEEEEEEEEEECCC-----------------CCCTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCEEEEECCCCCCCCC--C----CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             04147777516872113541033323688--8----6000101257899868999999999999999999999


No 9  
>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=85.45  E-value=1.1  Score=22.03  Aligned_cols=90  Identities=22%  Similarity=0.226  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEE-EEEEEECCCCHHHCC
Q ss_conf             9999999999999886288532458872167416676665556564210100000004888998-899995499135173
Q gi|254780177|r  118 CFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFH-GLSLNISPDLSYYTG  196 (257)
Q Consensus       118 ~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~H-G~alNv~~dL~~F~~  196 (257)
                      .+-|.|-..+-+.|.++|++..|.-+  -+||++              |=+|+-|..+.-+|.- -++|||...-.    
T Consensus        84 ~~QRLl~~~~~evL~~~g~~~~r~GD--DLyv~~--------------~KlSVSIA~~s~~s~~iH~GINV~~~g~----  143 (188)
T d2ddza1          84 SLQKLLIARLVELLWNYGIEASRRGD--DIYVNG--------------RKLSISIATVSPVSIKIHIGLNVKTVGV----  143 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEETT--EEEETT--------------EECEEEEEEECSSCEEEEEEEESCCSSC----
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEECCC--EEEECC--------------CEEEEEEEEECCCCEEEEEEEEEECCCC----
T ss_conf             99999999999999973985376278--379839--------------7789999960688248898788761674----


Q ss_pred             EEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             41056797852128991898899999999999999874
Q gi|254780177|r  197 IVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF  234 (257)
Q Consensus       197 IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~F  234 (257)
                        |   ++..+.||.++|.  +.+++.+.+...|.+.|
T Consensus       144 --p---~~v~a~~L~d~g~--d~~~fm~~v~~~y~~E~  174 (188)
T d2ddza1         144 --P---PGVDAIGLEELGI--DPTEFMERSAKALVEEI  174 (188)
T ss_dssp             --C---SSSCBCCHHHHTC--CHHHHHHHHHHHHHHHH
T ss_pred             --C---CCCCEECHHHCCC--CHHHHHHHHHHHHHHHH
T ss_conf             --7---8751201643288--99999999999999998


No 10 
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=57.61  E-value=3.7  Score=18.71  Aligned_cols=29  Identities=31%  Similarity=0.547  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHCCCCC--CCCCCCCEEEECC
Q ss_conf             9999999988628853--2458872167416
Q gi|254780177|r  123 LEEVIIRTLKILGIVG--ERREDRVGIWVVR  151 (257)
Q Consensus       123 lE~~ii~~l~~~gI~~--~~~~~~~GVWV~~  151 (257)
                      |-+.+-+.|.+|||++  +.++.+.||||-+
T Consensus        35 LLelV~~WL~e~GiestihLDDkRHGVYVLe   65 (80)
T d1b24a2          35 LLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN   65 (80)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEETTTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
T ss_conf             9999999999708601487426645279994


No 11 
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.40  E-value=16  Score=14.57  Aligned_cols=57  Identities=18%  Similarity=0.100  Sum_probs=28.1

Q ss_pred             CCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEECCCCEEEEEEECCCC
Q ss_conf             9787899980687377434788556105478249980566707860789247776512100
Q gi|254780177|r   51 NAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAK  111 (257)
Q Consensus        51 ~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypii~L~~  111 (257)
                      ...+. +++.-...+|+||+......+.....+..-+.+=-.+++..-||   |.|.|++.
T Consensus        13 ~~~~~-~~l~~~~~~tiGR~~~~~~~l~~~~~~~~VSR~Ha~i~~~~~g~---~~l~D~~S   69 (127)
T d2piea1          13 MSAGW-LLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQ---WTIMDNKS   69 (127)
T ss_dssp             CSSCB-EEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTSC---EEEEECSC
T ss_pred             CCCCE-EECCCCCEEEECCCCCCCEEECCCCCCCCCCHHHEEEEECCCCE---EEEEECCC
T ss_conf             99884-88578998875367876589789975661662361899979985---99998777


No 12 
>d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.55  E-value=19  Score=14.01  Aligned_cols=17  Identities=29%  Similarity=0.735  Sum_probs=14.4

Q ss_pred             CCCEEEEECCCCEEEEE
Q ss_conf             66707860789247776
Q gi|254780177|r   89 RGGGYTYHGPGQRIIYI  105 (257)
Q Consensus        89 RGG~iTyHGPGQlV~Yp  105 (257)
                      .||.+|+-.+|+++.|-
T Consensus        12 ~GG~~tl~~~GSvL~Y~   28 (68)
T d2ok5a4          12 KGGSFRLLQEGQALEYV   28 (68)
T ss_dssp             BTCEEEEEGGGTEEEEE
T ss_pred             ECCEEEECCCCEEEEEE
T ss_conf             47879871798699988


No 13 
>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Probab=22.12  E-value=19  Score=14.15  Aligned_cols=14  Identities=14%  Similarity=-0.121  Sum_probs=9.7

Q ss_pred             EEECCC-CEEEEEEE
Q ss_conf             860789-24777651
Q gi|254780177|r   94 TYHGPG-QRIIYIML  107 (257)
Q Consensus        94 TyHGPG-QlV~Ypii  107 (257)
                      -|.||| ++|.|||=
T Consensus        32 ~~~g~~~h~v~YpI~   46 (128)
T d2voua2          32 YGLLDDGHLIAYPIP   46 (128)
T ss_dssp             EEEETTEEEEEEEEC
T ss_pred             EEECCCCEEEEEEEC
T ss_conf             997699569999835


No 14 
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces vulgaris [TaxId: 2026]}
Probab=20.92  E-value=19  Score=14.03  Aligned_cols=16  Identities=25%  Similarity=0.312  Sum_probs=9.4

Q ss_pred             CEEEEECCCCEEEEEE
Q ss_conf             7078607892477765
Q gi|254780177|r   91 GGYTYHGPGQRIIYIM  106 (257)
Q Consensus        91 G~iTyHGPGQlV~Ypi  106 (257)
                      .-+++|+.||++.||-
T Consensus       199 ~~i~~Hs~~~~i~~P~  214 (323)
T d1obra_         199 TLITFHTYSELILYPY  214 (323)
T ss_dssp             EEEEEEESSSEEEESC
T ss_pred             EEEEECCCCCEEEECC
T ss_conf             6889616875586067


No 15 
>d2ipqx1 a.4.5.74 (X:396-528) Hypothetical protein STY4665 {Salmonella typhi [TaxId: 90370]}
Probab=20.54  E-value=18  Score=14.16  Aligned_cols=20  Identities=15%  Similarity=0.270  Sum_probs=11.6

Q ss_pred             ECCCCEEEEE------CCC---CEEEEEE
Q ss_conf             0566707860------789---2477765
Q gi|254780177|r   87 TGRGGGYTYH------GPG---QRIIYIM  106 (257)
Q Consensus        87 t~RGG~iTyH------GPG---QlV~Ypi  106 (257)
                      .|.+.-+|+|      |||   +|-+|.|
T Consensus        84 ~~~~niw~c~v~~~~~gprk~~~L~GYLi  112 (133)
T d2ipqx1          84 SDSRRFWQCCLYEEPGGRGRYKKLTGYLI  112 (133)
T ss_dssp             BTTBCCEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEECCCCCCCCCCEEEEEEE
T ss_conf             79977799997304678886354789993


No 16 
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02  E-value=16  Score=14.56  Aligned_cols=16  Identities=19%  Similarity=0.144  Sum_probs=11.8

Q ss_pred             EEEEECCCCEEEEEEE
Q ss_conf             0786078924777651
Q gi|254780177|r   92 GYTYHGPGQRIIYIML  107 (257)
Q Consensus        92 ~iTyHGPGQlV~Ypii  107 (257)
                      -+++|+-||++.||-=
T Consensus       169 ~i~~Hs~~~~i~yP~~  184 (296)
T d1uwya2         169 SANLHGGALVASYPFD  184 (296)
T ss_dssp             CCEEECSEEEEEESCS
T ss_pred             EEEECCCCEEEECCCC
T ss_conf             9996488706765788


Done!