Query gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 257 No_of_seqs 124 out of 1284 Neff 4.9 Searched_HMMs 13730 Date Mon May 23 01:41:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780177.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1w66a1 d.104.1.3 (A:1-216) Li 100.0 0 0 474.7 23.8 207 17-237 7-214 (216) 2 d2p0la1 d.104.1.3 (A:4-272) Li 99.9 1.8E-24 1.3E-28 176.4 17.7 200 27-239 17-248 (269) 3 d2c8ma1 d.104.1.3 (A:1-256) Li 99.9 5.9E-24 4.3E-28 173.2 18.6 208 25-240 6-228 (256) 4 d2p5ia1 d.104.1.3 (A:14-278) H 99.9 1.3E-22 9.2E-27 164.5 17.1 199 31-243 14-243 (265) 5 d1x2ga2 d.104.1.3 (A:1-246) Tw 99.9 2E-22 1.5E-26 163.1 17.0 203 21-242 2-219 (246) 6 d1vqza2 d.104.1.3 (A:1-241) Lp 99.9 1.3E-21 9.4E-26 157.9 18.2 195 22-236 1-211 (241) 7 d2zgwa2 d.104.1.2 (A:1-188) Bi 97.9 0.00013 9.4E-09 47.6 11.4 121 89-236 48-170 (188) 8 d1biaa3 d.104.1.2 (A:64-270) B 96.4 0.032 2.4E-06 32.0 10.8 128 89-235 55-188 (207) 9 d2ddza1 d.104.1.4 (A:3-190) Un 85.5 1.1 8.3E-05 22.0 8.2 90 118-234 84-174 (188) 10 d1b24a2 d.95.2.1 (A:100-179) D 57.6 3.7 0.00027 18.7 2.9 29 123-151 35-65 (80) 11 d2piea1 b.26.1.2 (A:13-139) Ub 28.4 16 0.0012 14.6 2.4 57 51-111 13-69 (127) 12 d2ok5a4 g.18.1.1 (A:9-76) Comp 22.6 19 0.0014 14.0 1.8 17 89-105 12-28 (68) 13 d2voua2 d.16.1.2 (A:164-291) D 22.1 19 0.0014 14.1 1.7 14 94-107 32-46 (128) 14 d1obra_ c.56.5.2 (A:) Carboxyp 20.9 19 0.0014 14.0 1.5 16 91-106 199-214 (323) 15 d2ipqx1 a.4.5.74 (X:396-528) H 20.5 18 0.0013 14.2 1.4 20 87-106 84-112 (133) 16 d1uwya2 c.56.5.1 (A:1-296) Car 20.0 16 0.0012 14.6 1.0 16 92-107 169-184 (296) No 1 >d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Probab=100.00 E-value=0 Score=474.73 Aligned_cols=207 Identities=33% Similarity=0.543 Sum_probs=190.6 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEE Q ss_conf 78972389980888588999999999999997399787899980687377434788556105478249980566707860 Q gi|254780177|r 17 ENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYH 96 (257) Q Consensus 17 ~~~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyH 96 (257) ..+.+|+++ ..|++||+++|++|+++++++.++. +|+|||||||||||+|++++.++++. .++||++|+|||++||| T Consensus 7 ~~~~~i~i~-~LG~v~Y~~a~~~q~~~~~~~~~~~-~d~llllEH~pVyT~G~~~~~~~~~~-~~i~v~~tdRGG~vTyH 83 (216) T d1w66a1 7 SKLSAIDVR-QLGTVDYRTAWQLQRELADARVAGG-ADTLLLLEHPAVYTAGRRTETHERPI-DGTPVVDTDRGGKITWH 83 (216) T ss_dssp SCCSCCEEE-EEEECCHHHHHHHHHHHHHHHHTTC-CCEEEEEECCSEEEECTTCCGGGSCT-TCCCCEECSSSSSEEEE T ss_pred HCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCEEECCCCCCCCCCC-CCCCEEECCCCCEEEEE T ss_conf 218943798-8896088999999999999984799-88599994588356056676654544-11002442788527774 Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC Q ss_conf 78924777651210012038999999999999998862885324588721674166766655565642101000000048 Q gi|254780177|r 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257) Q Consensus 97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257) ||||||+|||+||++ ..++++|++.||+++|++|++|||++.+++++|||||++. .++||||||++++| T Consensus 84 GPGQlV~Ypil~l~~-~~~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~~----------~~~KIasiGv~v~~ 152 (216) T d1w66a1 84 GPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGR----------PARKVAAIGVRVSR 152 (216) T ss_dssp CTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSS----------SCEEEEEEEEEEET T ss_pred CCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC----------HHHHHHHHHHHHCC T ss_conf 377456677761211-2213566777889999998751442112246775012110----------15678899977503 Q ss_pred CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHH Q ss_conf 88998899995499135173410567978521289-91898899999999999999874611 Q gi|254780177|r 177 WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPT 237 (257) Q Consensus 177 ~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~ 237 (257) ||||||||||||+||++|+.|+|||+++..||||+ ++|.+++++|+++.++++|.+.|... T Consensus 153 ~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~~~f~~~ 214 (216) T d1w66a1 153 ATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 214 (216) T ss_dssp TEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTC T ss_pred CEEECCEEEECCCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 62521357852577554690785799999266417996899989999999999999986111 No 2 >d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Probab=99.93 E-value=1.8e-24 Score=176.41 Aligned_cols=200 Identities=14% Similarity=0.067 Sum_probs=168.0 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCH-------HHHCCCCCCEEEEECCCCEEEEECCC Q ss_conf 08885889999999999999973997878999806873774347885-------56105478249980566707860789 Q gi|254780177|r 27 MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAIS-------DDLLSPKSLPVYTTGRGGGYTYHGPG 99 (257) Q Consensus 27 ~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~-------~dll~~~~ipv~~t~RGG~iTyHGPG 99 (257) ..+..|.+..++.++.+++.+..+..+.+|+|.+|+|++++|++.+. .+.+...|+++++-.+||+.+||+|| T Consensus 17 ~~~~~d~~~~la~~e~ll~~v~~~~~~~~l~~w~~~ptvvlG~~q~~~~~~e~~~~~~~~~gi~vvRR~sGGgaV~hd~G 96 (269) T d2p0la1 17 VTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEG 96 (269) T ss_dssp BCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEESTT T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEECCC T ss_conf 36888978978999999997225789978999348998998987676821888899999859958996579866998899 Q ss_pred CEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCEEEECCCCCCCCCCCCCCCCCCEEHH Q ss_conf 24777651210-01203899999999999999886288532458-------87216741667666555656421010000 Q gi|254780177|r 100 QRIIYIMLNLA-KRRKDLRCFVAALEEVIIRTLKILGIVGERRE-------DRVGIWVVRLNKTRDNQLLLIEEKIAAIG 171 (257) Q Consensus 100 QlV~Ypii~L~-~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~-------~~~GVWV~~~~~~~~~~~~~~~~KIasIG 171 (257) ||..++|++.. ....++..+.+.+.++++++|+.+||++...+ +.-.+++ ..+||+..+ T Consensus 97 ~l~~s~i~p~~~~~~~~i~~~y~~~~~~i~~~L~~lGi~a~~~~~~~~~c~g~~Dl~v-------------~grKi~G~A 163 (269) T d2p0la1 97 ILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSI-------------NGKKFAGLA 163 (269) T ss_dssp EEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEE-------------TTEEEEEEE T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEE-------------CCEEEEEEE T ss_conf 6799999705533589999999999999999999759736871356777877535774-------------472799876 Q ss_pred EECCCCEEEEEEEEEECCCCHH----HCCEEECCCCCC------------CCCCHHH-HCCCCCHHHHHHHHHHHHHHHH Q ss_conf 0004888998899995499135----173410567978------------5212899-1898899999999999999874 Q gi|254780177|r 172 IRIRKWISFHGLSLNISPDLSY----YTGIVPCGISQH------------GVTSLKE-LGYSYSMKYIDTLIRKSFESVF 234 (257) Q Consensus 172 i~i~~~vT~HG~alNv~~dL~~----F~~IvPCGl~~~------------~vTSl~~-lg~~i~~~ev~~~l~~~f~~~F 234 (257) -+.+|+..+|+.+|+++.|+.. ++....||+++. .||||++ ++.+++++++.+.|+..|.+.| T Consensus 164 qr~~r~~~l~hgtllv~~d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~L~~~~s~e~v~~~l~~~f~~~~ 243 (269) T d2p0la1 164 QRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLKQVG 243 (269) T ss_dssp EEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHHHHHHHT T ss_pred EEEECCEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEEHHHHCCCCCCHHHHHHHHHHHHHHHC T ss_conf 78988889999999970788999999877776304644543335765501213599873999999999999999999972 Q ss_pred CHHHH Q ss_conf 61110 Q gi|254780177|r 235 GPTIL 239 (257) Q Consensus 235 g~~~~ 239 (257) +.... T Consensus 244 ~~~~~ 248 (269) T d2p0la1 244 FNDRL 248 (269) T ss_dssp CCEEE T ss_pred CCCCC T ss_conf 87751 No 3 >d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Probab=99.92 E-value=5.9e-24 Score=173.15 Aligned_cols=208 Identities=14% Similarity=0.217 Sum_probs=164.6 Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEECCC Q ss_conf 9808885889999999999999973997878999806873774347885561-----05478249980566707860789 Q gi|254780177|r 25 WVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHGPG 99 (257) Q Consensus 25 ~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHGPG 99 (257) .+..++-+....+++-+.+.+....+. ..++.+.+|.|.+++|++.+..+. +...++||++-.+||+++||+|| T Consensus 6 ~~~~~~~~~~~nmA~de~Ll~~~~~~~-~p~lr~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~tGGgaV~hd~g 84 (256) T d2c8ma1 6 LLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLG 84 (256) T ss_dssp ECCCCTTCHHHHHHHHHHHHHHCCTTS-CCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTT T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCC T ss_conf 996399998999999999997343799-9789997589969988889801441989998679958997069862897899 Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEE Q ss_conf 24777651210012038999999999999998862885324588721674166766655565642101000000048889 Q gi|254780177|r 100 QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS 179 (257) Q Consensus 100 QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT 179 (257) |++.|+|++.. ..++..+.+.+.++++++|+.+||+++..+ ..++++..+. ..+.....+||+..+.+.+++.. T Consensus 85 ~l~~s~i~~~~--~~~~~~~y~~~~~~i~~~l~~lGi~a~~~~-~~~~~~~~~~---~~di~~~~~Ki~G~a~~~~~~~~ 158 (256) T d2c8ma1 85 DLNFSVVRSSD--DMDITSMFRTMNEAVVNSLRILGLDARPGE-LNDVSIPVNK---KTDIMAGEKKIMGAAGAMRKGAK 158 (256) T ss_dssp EEEEEEEEECS--SCCHHHHHHHHHHHHHHHHHHTTCCCEECC-BCCTTSSSSB---TTSEEETTEEEEEEEEEEETTEE T ss_pred CEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEECC-CCCEEEEECC---CCCCCCCCCEECCCCCCCCCCEE T ss_conf 84999997158--999999999999999998765280378868-5870898204---77654554334032222135179 Q ss_pred EEEEEEEECCCCHHH---CCEEECCCCCCCCCCH-------HHHCCCCCHHHHHHHHHHHHHHHHCHHHHC Q ss_conf 988999954991351---7341056797852128-------991898899999999999999874611102 Q gi|254780177|r 180 FHGLSLNISPDLSYY---TGIVPCGISQHGVTSL-------KELGYSYSMKYIDTLIRKSFESVFGPTILH 240 (257) Q Consensus 180 ~HG~alNv~~dL~~F---~~IvPCGl~~~~vTSl-------~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~ 240 (257) +|+.+|++++|++.+ -.+.||++.+..++|+ .++ .+++++++.+.|++.|.+.|+..+.. T Consensus 159 l~hgtll~~~d~~~l~~~L~~~~~~~~~~~~~s~~~~vt~L~~~-~~~~~e~~~~~l~~~f~~~~~~~~~~ 228 (256) T d2c8ma1 159 LWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSETLHIDFRE 228 (256) T ss_dssp EEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHHHHTCEEEE T ss_pred EEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99867403799999998758895010320355447533048762-89899999999999999985897612 No 4 >d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Probab=99.90 E-value=1.3e-22 Score=164.50 Aligned_cols=199 Identities=14% Similarity=0.022 Sum_probs=165.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCH-----H--HHCCCCCCEEEEECCCCEEEEECCCCEEE Q ss_conf 5889999999999999973997878999806873774347885-----5--61054782499805667078607892477 Q gi|254780177|r 31 VDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAIS-----D--DLLSPKSLPVYTTGRGGGYTYHGPGQRII 103 (257) Q Consensus 31 v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~-----~--dll~~~~ipv~~t~RGG~iTyHGPGQlV~ 103 (257) .|....++.++.+.+.+.++..+.+|.|.+|+|++|+|++.+. . +.+...++||++-.+||+.+||+|||+.. T Consensus 14 ~~~~~~~A~de~Ll~~~~~~~~~p~lr~~~~~ptv~lG~~q~~~~~~~~~~~~~~~~gi~vvRR~tGGgaV~hd~g~l~~ 93 (265) T d2p5ia1 14 FQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNL 93 (265) T ss_dssp SCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEESSCCCCEEECTTEEEE T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCEE T ss_conf 89889779999999987468999889999519989989888888535667999997698199961899559976998189 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC Q ss_conf 765121001203899999999999999886288532458-------8721674166766655565642101000000048 Q gi|254780177|r 104 YIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRE-------DRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257) Q Consensus 104 Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~-------~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257) ++|+.... ..++..+.+.+.++++++|+.+||++...+ +...||++ .+||+.++.+.++ T Consensus 94 s~i~~~~~-~~~~~~~y~~~~~~i~~~l~~lGi~a~~~~~~~~~c~g~~Dl~v~-------------g~Ki~G~Aq~~~~ 159 (265) T d2p5ia1 94 SLVLKEEK-GFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSID-------------GKKFAGISQRRIR 159 (265) T ss_dssp EEEEECCT-TCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEET-------------TEEEEEEEEEEET T ss_pred EEEECCCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEC-------------CEEEEEEEEEEEC T ss_conf 99974344-531789999999999999997297427746667779887746888-------------8899987678988 Q ss_pred CEEEEEEEEEECCCCHHHCCEE----------------ECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHH Q ss_conf 8899889999549913517341----------------05679785212899-189889999999999999987461110 Q gi|254780177|r 177 WISFHGLSLNISPDLSYYTGIV----------------PCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTIL 239 (257) Q Consensus 177 ~vT~HG~alNv~~dL~~F~~Iv----------------PCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~ 239 (257) +...|.-+|.++.|++....+. .|......||||++ +|..++++++.+.+++.|.+.+++... T Consensus 160 ~~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~l~~~~~~~~v~~~l~~~f~~~~~~l~~ 239 (265) T d2p5ia1 160 GGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQQHGASLLT 239 (265) T ss_dssp TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHHHHHHHTTCCCEE T ss_pred CEEEEEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 88999989996489899999971232222113564334566422202769998489999999999999999985686501 Q ss_pred CHHH Q ss_conf 2331 Q gi|254780177|r 240 HEYA 243 (257) Q Consensus 240 ~~~~ 243 (257) .+++ T Consensus 240 ~~lt 243 (265) T d2p5ia1 240 ESLS 243 (265) T ss_dssp CCCC T ss_pred CCCC T ss_conf 7889 No 5 >d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=99.90 E-value=2e-22 Score=163.14 Aligned_cols=203 Identities=17% Similarity=0.225 Sum_probs=157.5 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEE Q ss_conf 23899808885889999999999999973997878999806873774347885561-----0547824998056670786 Q gi|254780177|r 21 PIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTY 95 (257) Q Consensus 21 ~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTy 95 (257) .+++..+...-+| .-+++.+.+.+.... ...++.+.+|+|++++|++.+.... +...++|+++-.+||+++| T Consensus 2 ~~rii~~~~~d~~-~NlA~de~Ll~~~~~--~~~~l~~~~~~p~v~lG~~Q~~~~ev~~~~~~~~gi~vvRR~tGGgaV~ 78 (246) T d1x2ga2 2 TLRLLISDSYDPW-FNLAVEECIFRQMPA--TQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVF 78 (246) T ss_dssp CEEEEEECCCCHH-HHHHHHHHHHHTSCT--TSEEEEEECCSSEEEECTTCCHHHHBCHHHHHHHTCEEEECSSCCCCEE T ss_pred CEEEEECCCCCHH-HHHHHHHHHHHCCCC--CCCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCEEEEECCCCCEEE T ss_conf 3999977999989-999999999964898--9959999827998998998986676589999877982999768872799 Q ss_pred ECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECC Q ss_conf 07892477765121001203899999999999999886288532458872167416676665556564210100000004 Q gi|254780177|r 96 HGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIR 175 (257) Q Consensus 96 HGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~ 175 (257) |+|||+.+|+|++..... ...++++++++|..+|+++... +...++++- ..+.+||+.++.+.+ T Consensus 79 hd~g~~~~s~i~~~~~~~------~~~~~~~i~~~l~~lgi~a~~~-~~~~~~~~~---------~~~gkKi~G~aq~~~ 142 (246) T d1x2ga2 79 HDLGNTCFTFMAGKPEYD------KTISTSIVLNALNALGVSAEAS-GRNDLVVKT---------VEGDRKVSGSAYRET 142 (246) T ss_dssp ECTTEEEEEEEEETTTCC------HHHHHHHHHHHHHHTTCCEEEE-TTTEEEECC---------TTCCEEEEEEEEEEC T ss_pred ECCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHCCCCEEEC-CCCCEEEEC---------CCCCEEEEEEEEEEE T ss_conf 679998999975572461------9999999999888618833666-855436731---------468617976779998 Q ss_pred CCEEEEEEEEEECCCCHHHC---CEEECCCCCC-------CCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHCHH Q ss_conf 88899889999549913517---3410567978-------5212899189889999999999999987461110233 Q gi|254780177|r 176 KWISFHGLSLNISPDLSYYT---GIVPCGISQH-------GVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHEY 242 (257) Q Consensus 176 ~~vT~HG~alNv~~dL~~F~---~IvPCGl~~~-------~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~ 242 (257) ++...|+.+|+++.|++.+. .+.||++.+. .||+|.+++.+++++++.+.|.+.|.+.|+..+.... T Consensus 143 ~~~~l~hgsi~~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~vt~l~e~~~~i~~e~~~~~l~~~f~~~~~~~~~~~~ 219 (246) T d1x2ga2 143 KDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEI 219 (246) T ss_dssp SSEEEEEEEEESSCCSSGGGGGBCCCHHHHHCCC------CBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCCCEEE T ss_pred CCEEEEECEEEECCCHHHHHHHCCCCCCCHHHHCCCCHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999907886569978977650889411133103432664767999679999999999999999998488773651 No 6 >d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Probab=99.89 E-value=1.3e-21 Score=157.94 Aligned_cols=195 Identities=15% Similarity=0.149 Sum_probs=152.2 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEE Q ss_conf 3899808885889999999999999973997878999806873774347885561-----05478249980566707860 Q gi|254780177|r 22 IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYH 96 (257) Q Consensus 22 ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyH 96 (257) +++..+...=+| .-+++.+.+.+....+ +.++.|.+|+|++++|++.+..+. +...++|+++..+||+++|| T Consensus 1 ~~~i~~~s~d~~-~nmA~de~Ll~~~~~~--~~~l~~~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~tGGgaV~h 77 (241) T d1vqza2 1 MKYIINHSNDTA-FNIALEEYAFKHLLDE--DQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYH 77 (241) T ss_dssp EEEEECCCCCHH-HHHHHHHHHHHHCTTC--SEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEE T ss_pred CEEEECCCCCHH-HHHHHHHHHHHCCCCC--CCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCEEEEECCCCCEEEE T ss_conf 989986899989-9999999999547889--9889997089989989889803666899998779849997389863897 Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC Q ss_conf 78924777651210012038999999999999998862885324588721674166766655565642101000000048 Q gi|254780177|r 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257) Q Consensus 97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257) +|||+..++|++...... ...+.+.++++++|+.+|++++.. +..++||++ +||+.++.+.++ T Consensus 78 ~~g~~~~s~i~~~~~~~~---~~~~~~~~~i~~al~~~g~~a~~~-~~~d~~v~g-------------~Ki~G~aq~~~~ 140 (241) T d1vqza2 78 DLNNLNYTIISKEDENKA---FDFKSFSTPVINTLAQLGVKAEFT-GRNDLEIDG-------------KKFCGNAQAYIN 140 (241) T ss_dssp CTTEEEEEEEEECCTTCC---CSHHHHHHHHHHHHHHTTCCEEEE-TTTEEEETT-------------EEEEEEEEEEET T ss_pred CCCCEEEEEEECCCCCHH---HHHHHHHHHHHHHHHHHCCCEEEE-CCCCEEECC-------------EEEEEEEEEEEC T ss_conf 799748999963765437---789999999999999844660882-258779878-------------787667899868 Q ss_pred CEEEEEEEEEECCCCHH---HCCEEECCCCCCC-------CCCHHH-HCCCCCHHHHHHHHHHHHHHHHCH Q ss_conf 88998899995499135---1734105679785-------212899-189889999999999999987461 Q gi|254780177|r 177 WISFHGLSLNISPDLSY---YTGIVPCGISQHG-------VTSLKE-LGYSYSMKYIDTLIRKSFESVFGP 236 (257) Q Consensus 177 ~vT~HG~alNv~~dL~~---F~~IvPCGl~~~~-------vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~ 236 (257) +..+|+.+|++++|++. +-.+.||++.+.. +|+|.+ ++.+++++++.+.|.+.|.+.|+. T Consensus 141 ~~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~v~~l~~~l~~~~~~e~~~~~l~~~f~~~~~~ 211 (241) T d1vqza2 141 GRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPE 211 (241) T ss_dssp TEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTT T ss_pred CEEEEEEEEEECCCHHHHHHHHCCCCCCCHHHCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 83999989871599999999848896433121452203211165877189999999999999999997488 No 7 >d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=97.89 E-value=0.00013 Score=47.61 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=85.8 Q ss_pred CCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCC Q ss_conf 66707860789247776512100120389999999999999988628853245-88721674166766655565642101 Q gi|254780177|r 89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERR-EDRVGIWVVRLNKTRDNQLLLIEEKI 167 (257) Q Consensus 89 RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~KI 167 (257) |.|..=..-+|.+.+-.++...........+.-..--++++++..|+++...+ |. -|+++ ++|| T Consensus 48 R~gr~W~sp~g~l~~S~~~~~~~~~~~~~~l~~~~~~av~~~l~~~~~~~~iKWPN--DI~~~-------------~kKi 112 (188) T d2zgwa2 48 ALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFSIDGRIKWPN--DVLVN-------------YKAI 112 (188) T ss_dssp GGGCBCCCCTTSEEEEEEECCCSCTTTGGGHHHHHHHHHHHHHHHTTCCCEEETTT--EEEET-------------TEEE T ss_pred CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC--HHEEC-------------CCCE T ss_conf 79987869852213178862133124555566777777887643104102678742--21268-------------8723 Q ss_pred EEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCH Q ss_conf 00000004888998899995499135173410567978521289-9189889999999999999987461 Q gi|254780177|r 168 AAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGP 236 (257) Q Consensus 168 asIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~ 236 (257) |-|=+--+.....-|+.+|++.++. ..+|||. +++.+++.+++-..+..+|.+.|.. T Consensus 113 ~GILiE~~~~~~iiGiGiNvn~~~~------------~~atsl~~~~~~~~~~~~l~~~l~~~l~~~~~~ 170 (188) T d2zgwa2 113 AGVLVEGKGDKIVLGIGLNVNNKVP------------NGATSMKLELGSEVPLLSVFRSLITNLDRLYLN 170 (188) T ss_dssp EEEEEEESSSCEEEEEEECSSSCCC------------TTCCCHHHHHSSCCCHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCEEEEEEEEECCCCCC------------CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 7998713466599988765488799------------875009998689999999999999999999999 No 8 >d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Probab=96.39 E-value=0.032 Score=32.05 Aligned_cols=128 Identities=14% Similarity=0.196 Sum_probs=73.1 Q ss_pred CCCEEEEECCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC Q ss_conf 667078607892-4777651210012038999999999999998862885324588721674166766655565642101 Q gi|254780177|r 89 RGGGYTYHGPGQ-RIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKI 167 (257) Q Consensus 89 RGG~iTyHGPGQ-lV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KI 167 (257) |.|..=+--||. +.+-.++...........+--..--++.++|..+.......+=-=-|++ .++|| T Consensus 55 R~gr~W~S~~G~~l~~S~~~~~~~~~~~~~~l~~~~~lav~~~l~~~~~~~~~iKWPNDIl~-------------~~kKi 121 (207) T d1biaa3 55 RRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYL-------------QDRKL 121 (207) T ss_dssp -------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEE-------------TTEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHC-------------CCCCC T ss_conf 69982446656665412210024670443103457788888887631453033553315545-------------88751 Q ss_pred EEHHEECC-----CCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 00000004-----888998899995499135173410567978521289918988999999999999998746 Q gi|254780177|r 168 AAIGIRIR-----KWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFG 235 (257) Q Consensus 168 asIGi~i~-----~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg 235 (257) |-|=+... ....-=|+.||++..- + |=.+.+...+++.+.|.+++.+++-..+.++|.+.|. T Consensus 122 ~GIL~E~~~~~~~~~~vviGiGiNv~~~~--~----~~~~~~~~~s~l~~~~~~i~~~~l~~~ll~~l~~~l~ 188 (207) T d1biaa3 122 AGILVELTGKTGDAAQIVIGAGINMAMRR--V----EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALE 188 (207) T ss_dssp EEEEEEEEC----CEEEEEEEEEECCC-----------------CCCTTTTTCCCCHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCEEEEECCCCCCCCC--C----CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 04147777516872113541033323688--8----6000101257899868999999999999999999999 No 9 >d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]} Probab=85.45 E-value=1.1 Score=22.03 Aligned_cols=90 Identities=22% Similarity=0.226 Sum_probs=56.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEE-EEEEEECCCCHHHCC Q ss_conf 9999999999999886288532458872167416676665556564210100000004888998-899995499135173 Q gi|254780177|r 118 CFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFH-GLSLNISPDLSYYTG 196 (257) Q Consensus 118 ~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~H-G~alNv~~dL~~F~~ 196 (257) .+-|.|-..+-+.|.++|++..|.-+ -+||++ |=+|+-|..+.-+|.- -++|||...-. T Consensus 84 ~~QRLl~~~~~evL~~~g~~~~r~GD--DLyv~~--------------~KlSVSIA~~s~~s~~iH~GINV~~~g~---- 143 (188) T d2ddza1 84 SLQKLLIARLVELLWNYGIEASRRGD--DIYVNG--------------RKLSISIATVSPVSIKIHIGLNVKTVGV---- 143 (188) T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEETT--EEEETT--------------EECEEEEEEECSSCEEEEEEEESCCSSC---- T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCC--EEEECC--------------CEEEEEEEEECCCCEEEEEEEEEECCCC---- T ss_conf 99999999999999973985376278--379839--------------7789999960688248898788761674---- Q ss_pred EEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 41056797852128991898899999999999999874 Q gi|254780177|r 197 IVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234 (257) Q Consensus 197 IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~F 234 (257) | ++..+.||.++|. +.+++.+.+...|.+.| T Consensus 144 --p---~~v~a~~L~d~g~--d~~~fm~~v~~~y~~E~ 174 (188) T d2ddza1 144 --P---PGVDAIGLEELGI--DPTEFMERSAKALVEEI 174 (188) T ss_dssp --C---SSSCBCCHHHHTC--CHHHHHHHHHHHHHHHH T ss_pred --C---CCCCEECHHHCCC--CHHHHHHHHHHHHHHHH T ss_conf --7---8751201643288--99999999999999998 No 10 >d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]} Probab=57.61 E-value=3.7 Score=18.71 Aligned_cols=29 Identities=31% Similarity=0.547 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHCCCCC--CCCCCCCEEEECC Q ss_conf 9999999988628853--2458872167416 Q gi|254780177|r 123 LEEVIIRTLKILGIVG--ERREDRVGIWVVR 151 (257) Q Consensus 123 lE~~ii~~l~~~gI~~--~~~~~~~GVWV~~ 151 (257) |-+.+-+.|.+|||++ +.++.+.||||-+ T Consensus 35 LLelV~~WL~e~GiestihLDDkRHGVYVLe 65 (80) T d1b24a2 35 LLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN 65 (80) T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTTTEEEEE T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCEEEEE T ss_conf 9999999999708601487426645279994 No 11 >d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Probab=28.40 E-value=16 Score=14.57 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=28.1 Q ss_pred CCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEECCCCEEEEEEECCCC Q ss_conf 9787899980687377434788556105478249980566707860789247776512100 Q gi|254780177|r 51 NAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAK 111 (257) Q Consensus 51 ~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypii~L~~ 111 (257) ...+. +++.-...+|+||+......+.....+..-+.+=-.+++..-|| |.|.|++. T Consensus 13 ~~~~~-~~l~~~~~~tiGR~~~~~~~l~~~~~~~~VSR~Ha~i~~~~~g~---~~l~D~~S 69 (127) T d2piea1 13 MSAGW-LLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQ---WTIMDNKS 69 (127) T ss_dssp CSSCB-EEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTSC---EEEEECSC T ss_pred CCCCE-EECCCCCEEEECCCCCCCEEECCCCCCCCCCHHHEEEEECCCCE---EEEEECCC T ss_conf 99884-88578998875367876589789975661662361899979985---99998777 No 12 >d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo sapiens) [TaxId: 9606]} Probab=22.55 E-value=19 Score=14.01 Aligned_cols=17 Identities=29% Similarity=0.735 Sum_probs=14.4 Q ss_pred CCCEEEEECCCCEEEEE Q ss_conf 66707860789247776 Q gi|254780177|r 89 RGGGYTYHGPGQRIIYI 105 (257) Q Consensus 89 RGG~iTyHGPGQlV~Yp 105 (257) .||.+|+-.+|+++.|- T Consensus 12 ~GG~~tl~~~GSvL~Y~ 28 (68) T d2ok5a4 12 KGGSFRLLQEGQALEYV 28 (68) T ss_dssp BTCEEEEEGGGTEEEEE T ss_pred ECCEEEECCCCEEEEEE T ss_conf 47879871798699988 No 13 >d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Probab=22.12 E-value=19 Score=14.15 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=9.7 Q ss_pred EEECCC-CEEEEEEE Q ss_conf 860789-24777651 Q gi|254780177|r 94 TYHGPG-QRIIYIML 107 (257) Q Consensus 94 TyHGPG-QlV~Ypii 107 (257) -|.||| ++|.|||= T Consensus 32 ~~~g~~~h~v~YpI~ 46 (128) T d2voua2 32 YGLLDDGHLIAYPIP 46 (128) T ss_dssp EEEETTEEEEEEEEC T ss_pred EEECCCCEEEEEEEC T ss_conf 997699569999835 No 14 >d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces vulgaris [TaxId: 2026]} Probab=20.92 E-value=19 Score=14.03 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=9.4 Q ss_pred CEEEEECCCCEEEEEE Q ss_conf 7078607892477765 Q gi|254780177|r 91 GGYTYHGPGQRIIYIM 106 (257) Q Consensus 91 G~iTyHGPGQlV~Ypi 106 (257) .-+++|+.||++.||- T Consensus 199 ~~i~~Hs~~~~i~~P~ 214 (323) T d1obra_ 199 TLITFHTYSELILYPY 214 (323) T ss_dssp EEEEEEESSSEEEESC T ss_pred EEEEECCCCCEEEECC T ss_conf 6889616875586067 No 15 >d2ipqx1 a.4.5.74 (X:396-528) Hypothetical protein STY4665 {Salmonella typhi [TaxId: 90370]} Probab=20.54 E-value=18 Score=14.16 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=11.6 Q ss_pred ECCCCEEEEE------CCC---CEEEEEE Q ss_conf 0566707860------789---2477765 Q gi|254780177|r 87 TGRGGGYTYH------GPG---QRIIYIM 106 (257) Q Consensus 87 t~RGG~iTyH------GPG---QlV~Ypi 106 (257) .|.+.-+|+| ||| +|-+|.| T Consensus 84 ~~~~niw~c~v~~~~~gprk~~~L~GYLi 112 (133) T d2ipqx1 84 SDSRRFWQCCLYEEPGGRGRYKKLTGYLI 112 (133) T ss_dssp BTTBCCEEEEEEEETTTEEEEEEEEEEEE T ss_pred CCCCCEEEEEEECCCCCCCCCCEEEEEEE T ss_conf 79977799997304678886354789993 No 16 >d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Probab=20.02 E-value=16 Score=14.56 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=11.8 Q ss_pred EEEEECCCCEEEEEEE Q ss_conf 0786078924777651 Q gi|254780177|r 92 GYTYHGPGQRIIYIML 107 (257) Q Consensus 92 ~iTyHGPGQlV~Ypii 107 (257) -+++|+-||++.||-= T Consensus 169 ~i~~Hs~~~~i~yP~~ 184 (296) T d1uwya2 169 SANLHGGALVASYPFD 184 (296) T ss_dssp CCEEECSEEEEEESCS T ss_pred EEEECCCCEEEECCCC T ss_conf 9996488706765788 Done!