RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] (257 letters) >gnl|CDD|30669 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism]. Length = 221 Score = 245 bits (628), Expect = 6e-66 Identities = 90/232 (38%), Positives = 130/232 (56%), Gaps = 13/232 (5%) Query: 14 FPMENISP-IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI 72 P I VDY+E+ +ME + G + +WL+EHPP+YT+G + Sbjct: 1 QRSPRSKPKIILVRELGLVDYQEAWQLMETFTDARADGGTPDEIWLVEHPPVYTAGQAGK 60 Query: 73 SDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLK 132 ++ LL P +PV T RGG TYHGPGQ + Y +L+L + + D+R +V ALE+ +I TL Sbjct: 61 AEHLLMPDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLA 120 Query: 133 ILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLS 192 GI ERR DR G+WV E KIAAIGIRIR+ ++FHGL+LN++ DLS Sbjct: 121 EYGIEAERRPDRPGVWVEE------------ERKIAAIGIRIRRGVTFHGLALNVNMDLS 168 Query: 193 YYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHEYAN 244 + IVPCG + VTSL +LG ++ + + +F + GP ++ Sbjct: 169 PFNRIVPCGYAGMEVTSLSDLGPPVTVDEVAKALVAAFAKLLGPKLIVAELT 220 >gnl|CDD|35546 KOG0325, KOG0325, KOG0325, Lipoyltransferase [Energy production and conversion, Coenzyme transport and metabolism]. Length = 226 Score = 115 bits (289), Expect = 1e-26 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 22/183 (12%) Query: 35 ESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGT---SAISDDLLSPKSLP--VYTTGR 89 +++++ +I + S + + EH P+YT G D L + T R Sbjct: 24 QNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRTLDFTLYDESRLYKLGAEFHKTER 83 Query: 90 GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWV 149 GG T+HGPGQ + Y +++L RC+V+ LE GI G G+WV Sbjct: 84 GGLITFHGPGQLVAYPIIDLRHFGFSARCYVSTLEA----ACPDFGIKGTASTKDTGVWV 139 Query: 150 VRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTS 209 + KIAAIGIR+ + I++HGL+LN++ DL+Y+ IVPCGI GVTS Sbjct: 140 G-------------DAKIAAIGIRVSREITYHGLALNVNTDLTYFNHIVPCGIYGRGVTS 186 Query: 210 LKE 212 + + Sbjct: 187 ISK 189 >gnl|CDD|145963 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family. This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor. Length = 124 Score = 62.4 bits (152), Expect = 1e-10 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 14/113 (12%) Query: 82 LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRR----KDLRCFVAALEEVIIRTLKILGIV 137 + V GG +H PG + Y +L L + + DL +V L ++ L Sbjct: 22 VVVARRQTGGRRVWHSPGGNLAYSLLLLPELKSFKPSDLPAYVLLLVLAVLEALGP---- 77 Query: 138 GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD 190 + GIWV K N +L+ +KIA I IR+ + H +L I + Sbjct: 78 ---KAGIPGIWVR--IKWP-NDVLVNGKKIAGILQEIRRGGTLHHGTLGIGIN 124 >gnl|CDD|30444 COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism]. Length = 248 Score = 30.7 bits (69), Expect = 0.46 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 22/158 (13%) Query: 90 GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWV 149 GGG +H G ++ + L + +I L+ LG+ G R Sbjct: 74 GGGAVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRALGVEGAECPGR----- 128 Query: 150 VRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHG--LSLNISPDLSYYTGIVPCG-ISQHG 206 N L++ +KI+ R K H L L+I +L VP I G Sbjct: 129 --------NDLVVDGKKISGSAQRRTKGRILHHGTLLLDIDLELLARVLRVPKEKIKSKG 180 Query: 207 VTSLKE------LGYSYSMKYIDTLIRKSFESVFGPTI 238 + S++E S++ + ++F V G + Sbjct: 181 IKSVRERVANLEELLKISVEEFLEALLEAFFKVLGVEL 218 >gnl|CDD|147095 pfam04765, DUF616, Protein of unknown function (DUF616). Family of uncharacterized proteins. Length = 306 Score = 30.0 bits (68), Expect = 0.70 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 108 NLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIW 148 +++R K CFV ++E + TLK G V + RVG+W Sbjct: 84 GISERSKKNVCFVMFVDEETLSTLKSEGSVVD-GNGRVGLW 123 >gnl|CDD|36383 KOG1168, KOG1168, KOG1168, Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]. Length = 385 Score = 28.5 bits (63), Expect = 2.0 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 157 DNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYT-GIVPC 200 D LL E +AA+ I + HG PD +Y+T + PC Sbjct: 63 DESLLARAEALAAVDIPKSQGKQHHGDPPPFKPDATYHTMSVPPC 107 >gnl|CDD|30602 COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]. Length = 272 Score = 26.8 bits (59), Expect = 5.7 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 2/79 (2%) Query: 16 MENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD 75 E V V +++ + + N EEL LLE L+ G + Sbjct: 136 EEQYGLGEETVTFYAVSMGNPHLVIF--VDDVETANLEELGPLLESHELFPEGVNVGFVQ 193 Query: 76 LLSPKSLPVYTTGRGGGYT 94 +LS ++ + RG G T Sbjct: 194 VLSRDAIRLRVYERGAGET 212 >gnl|CDD|39522 KOG4321, KOG4321, KOG4321, Predicted phosphate acyltransferases [Lipid transport and metabolism]. Length = 279 Score = 26.9 bits (59), Expect = 6.2 Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 7 NALNTSMFPMENISPIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLY 65 N + ++P+ P+++ + P+ Y+E+ + +I +++LG+ + WL+ + Sbjct: 180 NKVRIPVYPIYGGFPVKFRTYLGKPIPYDENLTPQDLQI-KVTLGSYTSIAWLMRCSFNF 238 Query: 66 TSGTSAISDDLLSPKSLP 83 +AI D + + LP Sbjct: 239 VQVATAIEDLINQHQRLP 256 >gnl|CDD|36908 KOG1695, KOG1695, KOG1695, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]. Length = 206 Score = 26.8 bits (59), Expect = 6.7 Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 21 PIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI 72 PIR V +E+ +I ME + + + +LE + AI Sbjct: 17 PIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAI 68 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.138 0.409 Gapped Lambda K H 0.267 0.0807 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,237,656 Number of extensions: 176233 Number of successful extensions: 348 Number of sequences better than 10.0: 1 Number of HSP's gapped: 344 Number of HSP's successfully gapped: 13 Length of query: 257 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 165 Effective length of database: 4,275,709 Effective search space: 705491985 Effective search space used: 705491985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.2 bits)