RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (257 letters)



>gnl|CDD|30669 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism].
          Length = 221

 Score =  245 bits (628), Expect = 6e-66
 Identities = 90/232 (38%), Positives = 130/232 (56%), Gaps = 13/232 (5%)

Query: 14  FPMENISP-IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI 72
                  P I        VDY+E+  +ME      + G   + +WL+EHPP+YT+G +  
Sbjct: 1   QRSPRSKPKIILVRELGLVDYQEAWQLMETFTDARADGGTPDEIWLVEHPPVYTAGQAGK 60

Query: 73  SDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLK 132
           ++ LL P  +PV  T RGG  TYHGPGQ + Y +L+L + + D+R +V ALE+ +I TL 
Sbjct: 61  AEHLLMPDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLA 120

Query: 133 ILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLS 192
             GI  ERR DR G+WV              E KIAAIGIRIR+ ++FHGL+LN++ DLS
Sbjct: 121 EYGIEAERRPDRPGVWVEE------------ERKIAAIGIRIRRGVTFHGLALNVNMDLS 168

Query: 193 YYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHEYAN 244
            +  IVPCG +   VTSL +LG   ++  +   +  +F  + GP ++     
Sbjct: 169 PFNRIVPCGYAGMEVTSLSDLGPPVTVDEVAKALVAAFAKLLGPKLIVAELT 220


>gnl|CDD|35546 KOG0325, KOG0325, KOG0325, Lipoyltransferase [Energy production and
           conversion, Coenzyme transport and metabolism].
          Length = 226

 Score =  115 bits (289), Expect = 1e-26
 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 22/183 (12%)

Query: 35  ESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGT---SAISDDLLSPKSLP--VYTTGR 89
           +++++   +I + S  +    +   EH P+YT G         D      L    + T R
Sbjct: 24  QNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRTLDFTLYDESRLYKLGAEFHKTER 83

Query: 90  GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWV 149
           GG  T+HGPGQ + Y +++L       RC+V+ LE          GI G       G+WV
Sbjct: 84  GGLITFHGPGQLVAYPIIDLRHFGFSARCYVSTLEA----ACPDFGIKGTASTKDTGVWV 139

Query: 150 VRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTS 209
                         + KIAAIGIR+ + I++HGL+LN++ DL+Y+  IVPCGI   GVTS
Sbjct: 140 G-------------DAKIAAIGIRVSREITYHGLALNVNTDLTYFNHIVPCGIYGRGVTS 186

Query: 210 LKE 212
           + +
Sbjct: 187 ISK 189


>gnl|CDD|145963 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family.
            This family includes biotin protein ligase,
           lipoate-protein ligase A and B. Biotin is covalently
           attached at the active site of certain enzymes that
           transfer carbon dioxide from bicarbonate to organic
           acids to form cellular metabolites. Biotin protein
           ligase (BPL) is the enzyme responsible for attaching
           biotin to a specific lysine at the active site of biotin
           enzymes. Each organism probably has only one BPL. Biotin
           attachment is a two step reaction that results in the
           formation of an amide linkage between the carboxyl group
           of biotin and the epsilon-amino group of the modified
           lysine. Lipoate-protein ligase A (LPLA) catalyses the
           formation of an amide linkage between lipoic acid and a
           specific lysine residue in lipoate dependent enzymes.
           The unusual biosynthesis pathway of lipoic acid is
           mechanistically intertwined with attachment of the
           cofactor.
          Length = 124

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 14/113 (12%)

Query: 82  LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRR----KDLRCFVAALEEVIIRTLKILGIV 137
           + V     GG   +H PG  + Y +L L + +     DL  +V  L   ++  L      
Sbjct: 22  VVVARRQTGGRRVWHSPGGNLAYSLLLLPELKSFKPSDLPAYVLLLVLAVLEALGP---- 77

Query: 138 GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD 190
              +    GIWV    K   N +L+  +KIA I   IR+  + H  +L I  +
Sbjct: 78  ---KAGIPGIWVR--IKWP-NDVLVNGKKIAGILQEIRRGGTLHHGTLGIGIN 124


>gnl|CDD|30444 COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].
          Length = 248

 Score = 30.7 bits (69), Expect = 0.46
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 90  GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWV 149
           GGG  +H  G     ++       +        L + +I  L+ LG+ G     R     
Sbjct: 74  GGGAVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRALGVEGAECPGR----- 128

Query: 150 VRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHG--LSLNISPDLSYYTGIVPCG-ISQHG 206
                   N L++  +KI+    R  K    H   L L+I  +L      VP   I   G
Sbjct: 129 --------NDLVVDGKKISGSAQRRTKGRILHHGTLLLDIDLELLARVLRVPKEKIKSKG 180

Query: 207 VTSLKE------LGYSYSMKYIDTLIRKSFESVFGPTI 238
           + S++E           S++     + ++F  V G  +
Sbjct: 181 IKSVRERVANLEELLKISVEEFLEALLEAFFKVLGVEL 218


>gnl|CDD|147095 pfam04765, DUF616, Protein of unknown function (DUF616).  Family of
           uncharacterized proteins.
          Length = 306

 Score = 30.0 bits (68), Expect = 0.70
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 108 NLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIW 148
            +++R K   CFV  ++E  + TLK  G V +    RVG+W
Sbjct: 84  GISERSKKNVCFVMFVDEETLSTLKSEGSVVD-GNGRVGLW 123


>gnl|CDD|36383 KOG1168, KOG1168, KOG1168, Transcription factor ACJ6/BRN-3,
           contains POU and HOX domains [Transcription].
          Length = 385

 Score = 28.5 bits (63), Expect = 2.0
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 157 DNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYT-GIVPC 200
           D  LL   E +AA+ I   +    HG      PD +Y+T  + PC
Sbjct: 63  DESLLARAEALAAVDIPKSQGKQHHGDPPPFKPDATYHTMSVPPC 107


>gnl|CDD|30602 COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and
           metabolism].
          Length = 272

 Score = 26.8 bits (59), Expect = 5.7
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 16  MENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD 75
            E        V    V      +++   +  +   N EEL  LLE   L+  G +     
Sbjct: 136 EEQYGLGEETVTFYAVSMGNPHLVIF--VDDVETANLEELGPLLESHELFPEGVNVGFVQ 193

Query: 76  LLSPKSLPVYTTGRGGGYT 94
           +LS  ++ +    RG G T
Sbjct: 194 VLSRDAIRLRVYERGAGET 212


>gnl|CDD|39522 KOG4321, KOG4321, KOG4321, Predicted phosphate acyltransferases
           [Lipid transport and metabolism].
          Length = 279

 Score = 26.9 bits (59), Expect = 6.2
 Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 7   NALNTSMFPMENISPIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLY 65
           N +   ++P+    P+++   +  P+ Y+E+    + +I +++LG+   + WL+     +
Sbjct: 180 NKVRIPVYPIYGGFPVKFRTYLGKPIPYDENLTPQDLQI-KVTLGSYTSIAWLMRCSFNF 238

Query: 66  TSGTSAISDDLLSPKSLP 83
               +AI D +   + LP
Sbjct: 239 VQVATAIEDLINQHQRLP 256


>gnl|CDD|36908 KOG1695, KOG1695, KOG1695, Glutathione S-transferase
          [Posttranslational modification, protein turnover,
          chaperones].
          Length = 206

 Score = 26.8 bits (59), Expect = 6.7
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 21 PIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI 72
          PIR       V +E+ +I ME   + +        + +LE        + AI
Sbjct: 17 PIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAI 68


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0807    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,237,656
Number of extensions: 176233
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 13
Length of query: 257
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,275,709
Effective search space: 705491985
Effective search space used: 705491985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)